genome.fa.s1884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001884.1 Hibiscus syriacus cultivar Beakdansim tig00003825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109377

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944--986	2	22.0	2	95	4	79	51	0	0	48	1.00
3084--3126	20	2.1	21	82	4	52	37	2	2	58	1.24
3084--3127	21	2.1	21	83	8	54	36	2	2	59	1.23
13772--13809	14	2.7	14	95	0	67	42	21	7	28	1.81
20223--20380	21	7.8	20	70	7	77	37	25	17	18	1.93
20348--20540	20	9.6	20	84	5	246	35	27	19	17	1.94
20909--20979	33	2.2	33	94	5	126	9	22	18	49	1.77
21059--21135	21	3.7	21	82	6	111	46	18	23	11	1.81
21120--21176	14	3.7	14	75	20	60	43	22	24	8	1.81
21112--21192	33	2.5	33	95	0	144	46	22	22	8	1.78
21210--21266	14	3.7	14	75	20	60	8	24	22	43	1.81
21193--21315	33	3.5	33	88	10	165	10	23	18	47	1.80
21251--21315	21	3.1	21	86	4	105	10	24	15	49	1.76
23275--23369	33	2.9	33	90	0	154	46	28	16	8	1.76
23327--23353	14	1.9	14	100	0	54	48	29	14	7	1.71
23241--23375	52	2.6	52	75	11	141	44	28	17	10	1.81
23241--23369	19	7.3	19	75	17	125	45	28	16	9	1.78
23365--23521	19	8.8	19	76	13	154	9	21	22	46	1.80
23387--23443	14	3.7	14	75	20	51	10	22	22	43	1.84
23370--23462	33	2.8	33	95	0	168	10	21	21	46	1.81
23365--23521	33	4.4	38	82	8	163	9	21	22	46	1.80
25460--25495	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25602--25700	19	5.4	19	83	14	136	45	17	23	14	1.84
25602--25719	53	2.2	53	96	3	220	44	17	24	13	1.85
25753--25788	14	2.6	14	100	0	72	8	25	22	44	1.80
25733--25946	53	4.2	52	83	13	250	13	22	18	46	1.83
25715--25932	72	3.1	72	92	4	340	13	22	17	46	1.83
28230--28254	12	2.1	12	100	0	50	0	28	0	72	0.86
29168--29396	20	11.4	20	84	5	239	18	17	26	37	1.93
34535--34596	24	2.7	23	80	7	63	38	6	3	51	1.44
35792--35880	2	48.0	2	68	14	57	50	0	0	49	1.00
39936--39976	21	2.0	21	85	0	55	36	2	12	48	1.54
63537--63618	41	2.0	41	100	0	164	26	7	21	43	1.79
66728--66826	21	4.8	20	75	6	81	37	23	18	21	1.94
66793--67062	20	13.5	20	83	6	242	36	24	17	21	1.94
67964--67988	12	2.1	12	100	0	50	72	0	28	0	0.86
70291--70361	33	2.2	33	81	0	79	21	22	19	36	1.95
70304--70382	33	2.4	33	95	0	149	13	24	17	44	1.85
70323--70400	19	4.4	19	78	15	103	15	21	16	46	1.84
70507--70542	13	2.6	14	86	4	56	47	22	0	30	1.52
72523--72579	14	3.7	14	77	20	60	45	22	21	10	1.82
72504--72596	33	2.8	33	95	0	168	47	21	20	10	1.80
72467--72601	19	7.6	19	76	16	128	45	23	19	11	1.82
72597--72725	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72597--72688	33	2.8	33	93	3	150	7	18	28	45	1.76
72769--73335	93	6.1	93	98	0	1098	45	19	12	22	1.84
75042--75131	14	5.7	14	74	23	81	42	23	25	8	1.83
75034--75148	33	3.5	33	95	0	212	45	20	24	9	1.81
75041--75153	19	6.8	18	72	23	88	43	22	24	9	1.83
75165--75221	14	3.7	14	75	20	60	8	24	22	43	1.81
75149--75229	33	2.5	33	95	0	144	8	22	22	46	1.78
75206--75281	21	3.7	21	83	3	109	11	25	17	46	1.82
75205--75282	41	1.9	41	97	0	147	12	25	16	44	1.83
75361--75431	33	2.2	33	89	0	106	47	16	23	11	1.79
75613--75667	22	2.5	22	81	0	74	20	16	40	23	1.91
75813--76006	20	9.6	20	82	5	221	19	19	25	35	1.95
75813--76006	60	3.2	60	83	0	253	19	19	25	35	1.95
92619--92659	18	2.3	18	91	4	66	63	2	4	29	1.28
98511--98566	24	2.4	23	84	3	67	51	19	10	17	1.74
98492--98587	47	2.0	48	81	2	113	52	16	11	19	1.74
106023--106119	51	1.9	51	91	0	158	46	5	20	27	1.72
106371--106424	24	2.2	24	80	6	65	42	5	42	9	1.60
106386--106431	24	1.9	24	86	0	65	43	4	41	10	1.59
106865--106896	12	2.7	12	100	0	64	18	50	15	15	1.79

Tables:   1

The End!