genome.fa.s1886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001886.1 Hibiscus syriacus cultivar Beakdansim tig00003829_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76638

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171--239	3	22.7	3	82	8	77	65	0	2	31	1.08
400--744	134	2.6	133	86	1	447	25	16	31	25	1.97
658--770	40	2.8	40	77	11	113	22	16	35	25	1.95
850--973	63	1.9	65	82	6	155	42	13	17	25	1.86
977--1074	38	2.8	34	78	13	110	37	12	17	32	1.87
1145--1223	39	2.0	39	80	4	88	34	15	8	41	1.78
1280--1417	36	3.8	36	78	11	140	37	11	16	34	1.85
1516--1839	154	2.1	155	82	7	383	40	11	14	33	1.81
2122--2231	8	13.8	8	82	0	130	27	16	23	32	1.96
2122--2231	24	4.6	24	88	0	148	27	16	23	32	1.96
2245--2301	2	28.5	2	100	0	114	0	0	49	50	1.00
3811--3856	16	2.9	16	75	15	51	0	15	8	76	1.02
3815--3869	19	2.9	18	76	12	58	0	14	9	76	1.02
3845--3874	13	2.4	13	94	5	53	0	10	6	83	0.81
8639--8671	11	3.1	11	86	8	50	69	3	0	27	1.03
10276--10974	4	180.8	4	88	6	1034	28	0	22	49	1.51
10913--10962	2	25.5	2	79	4	57	42	2	6	50	1.38
12122--12146	5	5.0	5	100	0	50	40	0	0	60	0.97
13996--14119	52	2.4	52	89	2	178	28	20	17	33	1.95
13931--14210	143	2.0	143	92	0	470	26	20	17	36	1.94
14048--14254	91	2.3	91	89	1	308	23	22	14	38	1.92
14569--14739	30	5.5	30	77	8	119	38	13	19	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14664--14739	31	2.6	29	80	14	91	38	13	17	31	1.88
14569--14775	96	2.1	97	84	4	267	37	13	20	28	1.90
14725--14974	65	3.7	65	77	11	229	36	13	22	28	1.92
14856--15196	39	9.0	38	89	3	415	37	16	19	26	1.92
15170--15355	76	2.5	76	80	9	222	40	13	14	31	1.85
27657--27699	2	21.0	2	85	4	59	46	2	2	48	1.27
30728--30797	3	23.0	3	84	8	88	38	1	0	60	1.06
30728--30798	37	1.9	37	91	5	117	39	1	0	59	1.06
32355--32407	26	2.0	26	88	0	79	49	0	0	50	1.00
32344--32395	22	2.4	21	78	12	61	50	0	0	50	1.00
39808--39866	9	6.3	9	77	14	66	83	0	16	0	0.66
39816--39865	17	2.9	16	82	11	64	82	0	18	0	0.68
41240--41624	93	4.1	93	91	3	578	28	17	20	34	1.95
42411--43196	228	3.5	229	87	3	1066	38	14	17	29	1.89
42411--43196	113	7.0	113	83	4	912	38	14	17	29	1.89
43412--43492	3	27.0	3	85	5	110	38	1	0	60	1.05
45057--45109	27	2.0	27	92	0	88	50	0	0	49	1.00
46818--46860	22	2.0	21	86	8	61	25	0	0	74	0.82
47963--47999	17	2.1	18	95	5	67	43	10	18	27	1.83
48712--48791	41	2.0	41	89	0	124	28	12	13	45	1.80
51895--52075	90	2.0	90	98	0	353	36	17	16	29	1.92
52670--52703	15	2.2	15	89	5	50	52	0	17	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57864--57999	65	2.1	65	86	2	184	33	16	20	28	1.95
58691--58721	16	1.9	16	93	0	53	58	25	0	16	1.38
72607--72704	42	2.3	40	80	13	108	27	20	24	27	1.99

Tables:   1

The End!