genome.fa.s1887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001887.1 Hibiscus syriacus cultivar Beakdansim tig00003830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101052

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8331--8417	35	2.5	34	78	12	88	56	10	6	26	1.58
9001--9035	18	1.9	18	88	0	52	25	11	28	34	1.91
10701--10741	18	2.3	18	87	4	57	60	2	7	29	1.36
10894--11013	50	2.3	52	87	5	165	24	25	29	20	1.99
11502--11569	28	2.4	29	80	14	79	38	4	0	57	1.19
16081--16113	12	2.8	12	86	13	50	21	0	33	45	1.52
20954--20982	6	4.8	6	100	0	58	17	17	48	17	1.82
27585--27645	29	2.1	29	81	6	70	47	1	1	49	1.21
31897--31921	2	12.5	2	100	0	50	48	0	0	52	1.00
33080--33262	41	4.5	41	95	0	330	19	19	23	37	1.94
33081--33259	20	8.8	20	71	4	133	19	18	23	37	1.94
33231--33294	22	3.0	21	69	13	51	15	20	21	42	1.89
33080--33309	82	2.8	79	87	7	284	21	17	22	38	1.93
33381--33411	6	5.2	6	100	0	62	35	48	16	0	1.46
33421--33492	22	3.4	22	71	11	78	37	26	19	16	1.93
33408--33471	19	3.2	19	70	12	65	40	20	20	18	1.91
33415--33746	41	8.1	40	79	11	264	37	21	20	19	1.95
33481--33746	89	3.2	81	84	9	319	36	21	20	20	1.95
33685--33750	21	3.2	21	67	4	62	39	24	18	18	1.92
34138--34167	2	15.0	2	100	0	60	50	0	0	50	1.00
36479--36524	23	2.0	23	95	4	85	56	4	34	4	1.39
43185--43240	28	2.0	28	100	0	112	39	3	17	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46713--46837	39	3.2	38	82	7	128	21	20	26	31	1.98
59475--59524	24	2.1	24	88	7	75	26	2	14	58	1.47
62753--62782	13	2.2	14	94	5	53	13	6	0	80	0.91
63929--63973	20	2.2	20	88	7	65	80	0	11	8	0.92
68522--68661	36	3.9	36	85	5	194	36	20	24	18	1.95
76160--76192	15	2.2	15	100	0	66	45	6	6	42	1.53
76567--76616	20	2.5	20	93	0	91	32	34	12	22	1.90
76796--76841	22	2.1	22	87	0	65	26	45	6	21	1.76
77212--77251	20	2.0	20	95	0	71	10	17	20	52	1.72
79218--79263	4	11.5	4	80	0	56	26	2	4	67	1.21
79400--79505	21	5.0	21	76	13	92	23	33	19	23	1.97
79403--79505	42	2.5	42	77	6	118	23	33	19	24	1.97
80844--81019	66	2.6	65	89	8	257	27	2	17	52	1.56
81113--81183	20	3.5	20	90	0	106	40	21	18	19	1.91
81520--81555	6	6.0	6	86	0	54	16	2	19	61	1.47
83018--83177	65	2.5	65	91	1	259	31	21	16	30	1.95
88998--89077	24	3.5	23	69	19	69	23	23	22	30	1.99
91783--91942	65	2.5	65	92	1	277	31	23	16	28	1.96
92712--92800	40	2.2	40	97	0	169	26	16	10	46	1.79
92711--92773	21	3.1	21	65	17	60	30	15	9	44	1.79
92722--92786	21	3.2	21	66	16	64	26	18	12	43	1.85
94263--94316	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94263--94330	24	2.8	24	84	0	64	38	20	17	23	1.93
95231--95320	20	4.5	21	76	8	89	25	11	24	38	1.88
95328--95381	20	2.7	19	75	8	63	24	14	33	27	1.94

Tables:   1

The End!