genome.fa.s1888.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001888.1 Hibiscus syriacus cultivar Beakdansim tig00003831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86993

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2869--3203	22	15.3	22	82	2	397	42	0	9	47	1.36
3349--3425	21	3.7	21	75	3	84	22	18	24	35	1.96
3345--3422	41	1.9	41	94	0	138	21	19	23	35	1.96
3453--3505	22	2.4	22	83	0	70	16	15	30	37	1.90
4230--4325	41	2.3	41	85	5	131	40	22	19	16	1.91
4258--4330	20	3.6	20	74	3	74	39	23	20	16	1.92
4255--4334	41	2.0	41	94	0	142	37	22	18	21	1.94
4460--4536	22	3.5	22	96	0	136	38	0	9	51	1.34
4562--4620	31	1.9	31	92	0	100	44	8	5	42	1.57
16035--16083	20	2.5	20	93	0	80	20	10	24	44	1.82
16220--16244	12	2.1	12	100	0	50	40	24	16	20	1.91
22017--22082	32	2.0	33	97	2	125	30	4	15	50	1.64
29321--29363	20	2.2	20	100	0	86	16	4	25	53	1.62
29506--29547	21	2.0	20	86	4	57	40	7	14	38	1.73
35066--35104	20	2.0	20	100	0	78	33	10	15	41	1.81
35106--35147	21	2.0	20	86	4	57	40	7	14	38	1.73
37988--38014	13	2.1	13	100	0	54	29	33	7	29	1.85
38326--38368	18	2.5	17	85	7	61	25	4	2	67	1.22
38800--38879	40	2.0	40	83	9	103	30	5	10	55	1.54
38915--38981	31	2.2	30	82	17	84	16	11	0	71	1.14
42002--42063	23	2.7	22	80	9	72	79	6	14	0	0.93
42002--42071	20	3.3	20	82	9	68	78	5	14	1	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43539--43660	36	3.4	36	75	8	106	24	20	16	38	1.92
43676--43800	36	3.4	36	87	5	171	26	20	13	40	1.89
43589--43863	138	2.0	138	85	2	374	28	20	12	38	1.89
43758--43915	67	2.4	67	85	5	196	32	21	8	37	1.83
43749--43915	65	2.5	65	83	4	192	31	21	8	38	1.83
44536--45381	105	8.3	103	85	8	1099	33	26	18	21	1.96
44536--45381	205	4.2	205	88	6	1211	33	26	18	21	1.96
44904--45283	191	2.0	191	94	0	670	33	26	17	21	1.96
46381--46423	18	2.5	17	85	7	61	25	4	2	67	1.22
46847--46927	40	2.1	40	84	9	105	30	4	9	54	1.55
46916--46940	2	12.5	2	100	0	50	48	0	0	52	1.00
46982--47033	27	2.0	27	88	3	79	11	13	1	73	1.19
46990--47050	27	2.3	27	82	5	70	13	14	3	68	1.32
48761--48802	18	2.3	18	88	8	59	54	14	4	26	1.59
53323--53365	2	21.5	2	100	0	86	48	0	0	51	1.00
62789--62838	26	2.0	26	84	11	68	40	0	4	56	1.18
62790--62845	25	2.2	24	78	12	60	35	0	3	60	1.14
65040--65174	67	2.0	67	95	0	243	20	18	25	34	1.96
71155--71180	13	2.0	13	100	0	52	15	7	0	76	0.99
71253--71314	30	2.1	30	90	0	97	22	17	12	46	1.82
83626--83708	43	1.9	43	92	0	139	36	21	13	28	1.91
84997--85089	46	2.0	46	87	4	134	31	13	30	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86367--86398	15	2.1	15	100	0	64	25	15	6	53	1.65

Tables:   1

The End!