Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001889.1 Hibiscus syriacus cultivar Beakdansim tig00003833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88606

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4433--4489
28
2.0
28
89
0
87
35
22
12
29
1.91
5199--5337
68
2.1
68
94
1
244
33
8
8
48
1.64
5923--5970
25
1.9
25
84
16
64
41
2
4
52
1.32
10427--10468
17
2.6
17
88
7
61
35
16
19
28
1.93
10678--10730
23
2.3
23
96
0
97
20
15
15
49
1.80
13660--13808
39
3.8
39
91
1
228
32
12
23
31
1.91
16723--16760
17
2.3
17
86
13
53
18
13
5
63
1.48
22109--22148
20
2.0
21
85
5
55
60
2
2
35
1.24
22179--22309
59
2.2
59
86
5
176
32
16
17
33
1.92
23635--23695
23
2.6
24
84
7
81
29
26
24
19
1.99
25297--25340
21
2.1
21
82
0
52
13
27
29
29
1.94
25610--26317
351
2.0
351
97
0
1353
35
20
10
33
1.87
29249--29317
23
3.0
23
89
0
102
26
26
27
20
1.99
33447--33484
18
2.1
18
85
9
51
47
0
0
52
1.00
36523--36548
3
8.7
3
100
0
52
69
0
30
0
0.89
40227--40308
3
27.3
3
100
0
164
32
0
0
67
0.91
41177--41236
23
2.6
23
70
19
54
36
5
3
55
1.38
42223--42256
9
3.9
9
84
7
52
32
0
2
64
1.08
42223--42260
17
2.3
17
90
4
60
31
0
2
65
1.06
43915--43949
18
1.9
18
94
0
61
25
22
22
28
1.99
44488--44534
25
1.9
25
86
4
69
21
6
12
59
1.55
44534--44573
20
2.0
21
85
5
55
37
10
2
50
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44970--45062
44
2.1
44
97
0
177
37
12
15
34
1.85
49958--50044
43
2.0
43
97
0
165
40
3
29
26
1.72
51696--51866
82
2.1
82
80
4
193
43
10
9
36
1.72
51949--52057
31
3.5
32
81
6
125
34
36
14
13
1.86
55757--55797
16
2.7
16
88
7
59
60
12
9
17
1.57
55867--55927
16
3.8
16
80
4
70
52
22
14
9
1.71
57026--57057
14
2.3
14
100
0
64
50
28
15
6
1.68
61534--61563
15
2.0
15
93
0
51
53
16
0
30
1.44
71160--71188
2
14.5
2
100
0
58
51
0
0
48
1.00
74301--74353
26
2.0
26
85
3
70
56
1
3
37
1.28
77138--77205
35
2.0
35
97
2
129
26
20
41
11
1.87
84692--84740
22
2.2
23
92
7
84
18
20
18
42
1.89
85393--85448
2
28.5
2
96
3
105
48
0
0
51
1.00

Tables:   1

The End!