genome.fa.s189.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000189.1 Hibiscus syriacus cultivar Beakdansim tig00000338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118500

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4810--4850	2	21.0	2	95	5	75	51	0	0	48	1.00
5734--5760	14	1.9	14	100	0	54	81	0	0	18	0.69
10307--10381	23	3.2	23	75	1	78	38	22	17	21	1.93
11417--11470	26	2.1	26	96	0	99	27	25	9	37	1.87
14535--14583	20	2.5	20	100	0	98	30	18	24	26	1.98
21876--21920	22	2.0	23	82	4	56	53	2	11	33	1.49
23833--23857	2	12.5	2	100	0	50	48	0	0	52	1.00
24631--24798	92	1.8	92	97	0	318	36	11	8	43	1.71
25096--25141	13	3.6	13	82	5	58	43	2	0	54	1.12
25102--25149	25	1.9	25	86	0	69	47	2	0	50	1.12
28821--28877	2	28.5	2	100	0	114	50	0	0	49	1.00
29592--29705	44	2.6	44	84	4	142	33	19	19	28	1.96
40885--41250	30	12.2	30	84	3	330	35	5	34	24	1.79
40902--40953	15	3.4	16	70	20	56	34	3	36	25	1.74
40905--41039	15	9.0	15	66	11	53	36	5	32	25	1.78
40892--41249	90	4.0	90	80	5	373	35	5	34	24	1.79
40892--41159	120	2.2	120	87	1	385	35	5	34	24	1.79
41081--41132	15	3.5	15	71	10	52	38	5	34	21	1.77
41095--41204	15	7.4	14	68	21	55	36	7	35	20	1.81
41111--41258	15	9.9	15	71	5	102	37	7	34	20	1.81
44392--44422	15	2.1	15	100	0	62	48	25	0	25	1.52
46002--46042	18	2.3	18	83	8	57	36	4	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48682--48841	30	5.3	30	76	4	124	19	16	5	59	1.55
48760--48883	30	4.1	30	81	3	115	16	13	8	61	1.56
49159--49197	16	2.4	16	86	4	51	17	2	2	76	1.01
54677--54780	28	3.6	28	75	18	106	30	15	11	42	1.82
54880--55239	134	2.7	132	85	4	479	27	29	17	25	1.98
55428--55473	3	15.7	3	79	20	53	34	0	0	65	0.93
55428--55473	18	2.5	19	86	10	69	34	0	0	65	0.93
55428--55473	15	3.1	14	87	9	65	34	0	0	65	0.93
55440--55479	18	2.2	18	86	0	53	32	0	2	65	1.06
57104--57348	30	8.3	30	73	6	153	20	13	8	57	1.62
57633--57671	16	2.4	16	86	4	51	15	5	2	76	1.06
58170--58220	25	2.0	25	96	0	93	43	11	21	23	1.85
63890--63973	34	2.5	34	100	0	168	50	25	5	19	1.70
75135--75162	2	14.0	2	100	0	56	50	0	0	50	1.00
75764--75798	18	1.9	18	94	0	61	45	2	0	51	1.16
75806--75883	27	2.8	26	83	12	86	35	21	5	37	1.76
78444--78493	3	17.0	3	88	12	77	34	0	0	66	0.92
79841--79879	3	13.0	3	88	0	60	33	2	2	61	1.23
79975--80181	103	2.0	101	80	5	231	39	8	8	43	1.65
80143--80187	23	2.0	22	86	4	63	48	2	0	48	1.13
80149--80195	23	2.1	23	84	4	60	55	0	0	44	0.99
82308--82373	14	4.9	14	74	10	57	24	9	9	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86440--86884	114	3.9	114	90	1	685	33	15	19	31	1.92
90198--90380	77	2.4	76	91	0	285	25	20	20	33	1.97
90530--90574	24	1.9	23	82	13	56	48	6	26	17	1.72
90644--90688	24	1.9	23	86	13	65	51	4	26	17	1.65
90390--91011	113	5.5	113	93	0	987	37	14	19	27	1.91
91004--91180	84	2.1	83	86	3	239	38	16	17	27	1.91
91429--91487	3	19.3	3	83	16	77	32	0	0	67	0.91
91429--91487	28	2.1	27	90	9	93	32	0	0	67	0.91
92896--92950	20	2.9	19	73	23	53	25	5	1	67	1.22
95166--95196	2	16.0	2	93	6	55	48	0	0	51	1.00
95725--95770	13	3.5	13	81	3	56	65	2	2	30	1.16
95801--95859	21	3.1	19	80	9	59	67	0	5	27	1.11
96353--96398	23	2.0	23	95	0	83	67	0	6	26	1.15
96475--96513	15	2.6	15	84	12	53	56	0	0	43	0.99
97757--97807	3	17.0	3	82	8	59	64	0	0	35	0.94
97758--97817	30	2.0	30	86	0	84	68	0	1	30	0.99
97956--98254	45	6.6	45	96	0	553	32	19	24	24	1.98
98914--99017	22	4.7	22	96	0	181	38	12	16	32	1.86
108110--108136	2	13.5	2	100	0	54	48	0	0	51	1.00
108514--108559	13	3.5	13	81	3	56	65	2	2	30	1.16
114053--114098	23	2.0	23	95	0	83	67	0	6	26	1.15
115087--115131	23	2.0	23	90	0	72	53	4	2	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116570--116606	19	2.0	19	94	5	67	32	21	5	40	1.76
116933--117151	115	1.9	112	82	8	273	28	10	5	54	1.59

Tables:   1

The End!