Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001891.1 Hibiscus syriacus cultivar Beakdansim tig00003836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 178718
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:4161 original size:31 final size:31
Alignment explanation
Indices: 4112--4185 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
4102 GGTCATCAAA
*
4112 AACCTTGG-AAACTATCCATAGGTCCCGAAG
1 AACCTAGGTAAACTATCCATAGGTCCCGAAG
* * * **
4142 AACCTAGGTAAACTGTCCATATGTTCCTTAG
1 AACCTAGGTAAACTATCCATAGGTCCCGAAG
*
4173 AACATAGGTAAAC
1 AACCTAGGTAAAC
4186 CCTCGACTCT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 7 0.19
31 29 0.81
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (31 bp):
AACCTAGGTAAACTATCCATAGGTCCCGAAG
Found at i:4488 original size:2 final size:2
Alignment explanation
Indices: 4476--4510 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
4466 TACACAACTC
4476 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4511 TGTAACATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9833 original size:64 final size:63
Alignment explanation
Indices: 9678--9837 Score: 164
Period size: 64 Copynumber: 2.5 Consensus size: 63
9668 CATCCCTTGT
* * **
9678 CGGGTGCATCGATGCACTGT-CTACGCATCGATGCATAAATCTCATTCGATGTTTGTATTTTAAG
1 CGGGTGCATCGATG-ACT-TCCTATGCATCGATGCATAAATCGCATTCGATGTTTCCATTTTAAG
** *
9742 CGGGTGCATCGATGAAATCCTTATGCATCGATGCACT-AATGGCATTCGATGTTTCCATTTTTAA
1 CGGGTGCATCGATGACTTCC-TATGCATCGATGCA-TAAATCGCATTCGATGTTTCCA-TTTTAA
9806 -
63 G
* *
9806 TGGGTGCATCGATGTACTTCCTGTGCATCGAT
1 CGGGTGCATCGATG-ACTTCCTATGCATCGAT
9838 ACACACTGAA
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 2 0.03
64 66 0.82
65 11 0.14
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (63 bp):
CGGGTGCATCGATGACTTCCTATGCATCGATGCATAAATCGCATTCGATGTTTCCATTTTAAG
Found at i:12941 original size:22 final size:22
Alignment explanation
Indices: 12916--12967 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
12906 GGAATTGATA
*
12916 CCCCCTTGCAGGGGAACCGATC
1 CCCCCTTGAAGGGGAACCGATC
* *
12938 CCCCCTTTGAATGGGAACCGATT
1 CCCCC-TTGAAGGGGAACCGATC
12961 CCCCCTT
1 CCCCCTT
12968 TAGGGAATCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.21
Consensus pattern (22 bp):
CCCCCTTGAAGGGGAACCGATC
Found at i:23004 original size:16 final size:16
Alignment explanation
Indices: 22983--23015 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22973 ACGTTTTAGT
22983 TAAAAAA-AATATTAAA
1 TAAAAAATAA-ATTAAA
22999 TAAAAAATAAATTAAA
1 TAAAAAATAAATTAAA
23015 T
1 T
23016 TGGGTTGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAAAAATAAATTAAA
Found at i:28363 original size:16 final size:16
Alignment explanation
Indices: 28342--28423 Score: 87
Period size: 16 Copynumber: 5.1 Consensus size: 16
28332 ATTCATATAG
28342 AGCATTTGAATCATTC
1 AGCATTTGAATCATTC
28358 AGCATTTGAATCATTC
1 AGCATTTGAATCATTC
** *
28374 AG-AGCT-AATTCATATAG
1 AGCATTTGAA-TCAT-T-C
*
28391 AGCCTTTGAATCATTC
1 AGCATTTGAATCATTC
28407 AGCATTTGAATCATTC
1 AGCATTTGAATCATTC
28423 A
1 A
28424 AAGCTTAATC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
14 2 0.04
15 6 0.11
16 35 0.66
17 3 0.06
18 5 0.09
19 2 0.04
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (16 bp):
AGCATTTGAATCATTC
Found at i:28374 original size:49 final size:49
Alignment explanation
Indices: 28321--28428 Score: 198
Period size: 49 Copynumber: 2.2 Consensus size: 49
28311 AGCATGTCAT
28321 ATTCAGAGCTAATTCATATAGAGCATTTGAATCATTCAGCATTTGAATC
1 ATTCAGAGCTAATTCATATAGAGCATTTGAATCATTCAGCATTTGAATC
*
28370 ATTCAGAGCTAATTCATATAGAGCCTTTGAATCATTCAGCATTTGAATC
1 ATTCAGAGCTAATTCATATAGAGCATTTGAATCATTCAGCATTTGAATC
*
28419 ATTCAAAGCT
1 ATTCAGAGCT
28429 TAATCATTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (49 bp):
ATTCAGAGCTAATTCATATAGAGCATTTGAATCATTCAGCATTTGAATC
Found at i:32304 original size:182 final size:182
Alignment explanation
Indices: 31984--32438 Score: 730
Period size: 182 Copynumber: 2.5 Consensus size: 182
31974 ACTTTTTTAC
* * *
31984 TACCGGTTTTGTCATTTCGAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATTTTTTTACATGTTATATTGTTATGGATCGA
* * * *
32049 TACATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAG
66 TACATTTTTATAAAGTATCAACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
32114 TATCGATACTTATAATAAAGTATCGACACTATCAACATATTCAGTAGCTCTT
131 TATCGATACTTATAATAAAGTATCGACACTATCAACATATTCAGTAGCTCTT
*
32166 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATTTTTTTACCTGTTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATTTTTTTACATGTTATATTGTTATGGATCGA
*
32231 TACATTTTTATAAAGTATTAACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
66 TACATTTTTATAAAGTATCAACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
* *
32296 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATTTAGTAGCTCTT
131 TATCGATACTTATAATAAAGTATCGACACTATCAACATATTCAGTAGCTCTT
* ** * * *
32348 TACCTGTTTTGTCATTTATAAACCGGTTTTATCATTTTTTTTACATGTTTTATTGTTATGGATCG
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCA-TTTTTTTACATGTTATATTGTTATGGATCG
* *
32413 ATACATTTTTATAAAATATCGACACT
65 ATACATTTTTATAAAGTATCAACACT
32439 ATCAACATAT
Statistics
Matches: 251, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
182 200 0.80
183 51 0.20
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (182 bp):
TACCGGTTTTGTCATTTCGAGACCGATTTTATCATTTTTTTACATGTTATATTGTTATGGATCGA
TACATTTTTATAAAGTATCAACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
TATCGATACTTATAATAAAGTATCGACACTATCAACATATTCAGTAGCTCTT
Found at i:32561 original size:111 final size:112
Alignment explanation
Indices: 32310--32995 Score: 952
Period size: 111 Copynumber: 6.1 Consensus size: 112
32300 GATACTTATA
* * *** * *
32310 ATAAAGTATCGACACTATCAACATATTTAGTAGCTCTTTACCTGTTTTGTCATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * * *
32375 TTTATCATTTTTTTTACATGTTTTATTGTTATGGATCGATACATTTTT
66 TTTGTCA-TTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
* * * *
32423 ATAAAATATCGACACTATCAACATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
32488 TTTGTCA-TTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
32534 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
32599 TTTGTCA-TTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
*
32645 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACAGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
32710 TTTGTCA-TTTTTTACCTGTTATATTATTATGGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
* * * *
32756 ATAAAGTATCGACATTTTCAATATATCTGGTAGCACTTTACCTGTTTTATCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * *
32821 TTTGTCATTTTTTTTTACTTATTATATTGTTAT-GAATAGATACATTTTT
66 TTTGTCA--TTTTTTTACCTGTTATATTGTTATAG-ATCGATACATTTTT
* * * * *
32870 ATAAAGTATCGACACTTTTAATATATTCGGTAGCGCTTTACCTGTTTTGTTATTTATAGACTGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
** * ** *
32935 TTTACCATTTTTTTACTTGTTAT-TTGTTA-AGGATTAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATA-GATCGATACATTTTT
*
32981 ATAAATTATCGACAC
1 ATAAAGTATCGACAC
32996 AAACTGACAA
Statistics
Matches: 524, Mismatches: 43, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
111 349 0.67
112 16 0.03
113 65 0.12
114 94 0.18
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
Found at i:32927 original size:336 final size:334
Alignment explanation
Indices: 32310--32995 Score: 966
Period size: 336 Copynumber: 2.0 Consensus size: 334
32300 GATACTTATA
** * *
32310 ATAAAGTATCGACACTATCAACATATTTAGTAGCTCTTTACCTGTTTTGTCATTTATAAACCGGT
1 ATAAAGTATCGACACTATCAACATATCCAGTAGCGCTTTACCTGTTTTGTCATTTATAAACAGGT
* *
32375 TTTATCATTTTTTTTACATGTTTTATTGTTATGGATCGATACATTTTTATAAAATATCGACACTA
66 TTTATCA-TTTTTTTACATGTTATATTATTATGGATCGATACATTTTTATAAAATATCGACACTA
* * *
32440 TCAACATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTACCT
130 TCAACATATCCGGTAGCACTTTACCTGTTTTATCATTTATAGACCGGTTTTGTCATTTTTTACCT
* *
32505 GTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGACACTTTCAATATATCCGGTAGCGC
195 ATTATATTGTTATAGATAGATACATTTTTATAAAGTATCGACACTTTCAATATATCCGGTAGCGC
* **
32570 TTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCA-TTTTTTACCTGTTATATTGTTATA-GAT
260 TTTACCTGTTTTGTCATTTATAGACCGATTTTACCATTTTTTTACCTGTTAT-TTGTTA-AGGAT
*
32633 CGATACATTTTT
323 CAATACATTTTT
* * * *
32645 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACAGGT
1 ATAAAGTATCGACACTATCAACATATCCAGTAGCGCTTTACCTGTTTTGTCATTTATAAACAGGT
* * * * *
32710 TTTGTCA-TTTTTTACCTGTTATATTATTATGGATCGATACATTTTTATAAAGTATCGACATTTT
66 TTTATCATTTTTTTACATGTTATATTATTATGGATCGATACATTTTTATAAAATATCGACACTAT
* *
32774 CAATATATCTGGTAGCACTTTACCTGTTTTATCATTTATAGACCGGTTTTGTCATTTTTTTTTAC
131 CAACATATCCGGTAGCACTTTACCTGTTTTATCATTTATAGACCGGTTTTGTCA---TTTTTTAC
* * *
32839 TTATTATATTGTTAT-GAATAGATACATTTTTATAAAGTATCGACACTTTTAATATATTCGGTAG
193 CTATTATATTGTTATAG-ATAGATACATTTTTATAAAGTATCGACACTTTCAATATATCCGGTAG
* * *
32903 CGCTTTACCTGTTTTGTTATTTATAGACTGATTTTACCATTTTTTTACTTGTTATTTGTTAAGGA
257 CGCTTTACCTGTTTTGTCATTTATAGACCGATTTTACCATTTTTTTACCTGTTATTTGTTAAGGA
* *
32968 TTAATATATTTTT
322 TCAATACATTTTT
*
32981 ATAAATTATCGACAC
1 ATAAAGTATCGACAC
32996 AAACTGACAA
Statistics
Matches: 310, Mismatches: 35, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
333 100 0.32
335 65 0.21
336 131 0.42
337 14 0.05
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (334 bp):
ATAAAGTATCGACACTATCAACATATCCAGTAGCGCTTTACCTGTTTTGTCATTTATAAACAGGT
TTTATCATTTTTTTACATGTTATATTATTATGGATCGATACATTTTTATAAAATATCGACACTAT
CAACATATCCGGTAGCACTTTACCTGTTTTATCATTTATAGACCGGTTTTGTCATTTTTTACCTA
TTATATTGTTATAGATAGATACATTTTTATAAAGTATCGACACTTTCAATATATCCGGTAGCGCT
TTACCTGTTTTGTCATTTATAGACCGATTTTACCATTTTTTTACCTGTTATTTGTTAAGGATCAA
TACATTTTT
Found at i:38695 original size:43 final size:43
Alignment explanation
Indices: 38634--38718 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
38624 CAAATTGTCA
* *
38634 AATTTAATAAGTTGGCAAAGTTGACAAGTTGATTGGTGGCTAC
1 AATTTAATAAGTTGGCAAAGTTGACAAGTTGATAGGTAGCTAC
38677 AATTTAATAAGTTGGCAAAGTTGACAAGTTGATAGGTAGCTA
1 AATTTAATAAGTTGGCAAAGTTGACAAGTTGATAGGTAGCTA
38719 ACTTATACAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (43 bp):
AATTTAATAAGTTGGCAAAGTTGACAAGTTGATAGGTAGCTAC
Found at i:45932 original size:33 final size:32
Alignment explanation
Indices: 45890--45965 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 32
45880 TTTAAACAGT
*
45890 TATTA-TATTTTATATTAATATAATTATATAAA
1 TATTATTATTTTATATTAAAATAA-TATATAAA
* * *
45922 TATTATTATTTTTTATTAAAATAATATTTATA
1 TATTATTATTTTATATTAAAATAATATATAAA
45954 TAATTATTATTT
1 T-ATTATTATTT
45966 ATTTAGAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 12 0.32
33 26 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (32 bp):
TATTATTATTTTATATTAAAATAATATATAAA
Found at i:45962 original size:36 final size:33
Alignment explanation
Indices: 45889--45969 Score: 92
Period size: 36 Copynumber: 2.4 Consensus size: 33
45879 TTTTAAACAG
45889 TTATTA-TATTTTATATTAATATAATTATATAA
1 TTATTATTATTTTATATTAATATAATTATATAA
* * *
45921 ATATTATTATTTTTTATTAAAATAATATTTATATAA
1 TTATTATTATTTTATATT--AAT-ATAATTATATAA
45957 TTATTATTTATTT
1 TTATTA-TTATTT
45970 AGAATTATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 5 0.12
33 10 0.25
35 3 0.08
36 16 0.40
37 6 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (33 bp):
TTATTATTATTTTATATTAATATAATTATATAA
Found at i:46136 original size:17 final size:16
Alignment explanation
Indices: 46114--46167 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
46104 TAATGTTAAT
46114 ATTTAAATTTATTTTTA
1 ATTTAAA-TTATTTTTA
* *
46131 ATTTAAAGTTATTATGA
1 ATTTAAA-TTATTTTTA
* *
46148 ATTTATATTAATTTTA
1 ATTTAAATTATTTTTA
46164 ATTT
1 ATTT
46168 TTTATAATGC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 10 0.33
17 20 0.67
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (16 bp):
ATTTAAATTATTTTTA
Found at i:47723 original size:21 final size:21
Alignment explanation
Indices: 47693--47740 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
47683 GCAGGGGTAC
* *
47693 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
*
47714 ATGCCAAGCCCACCAGTTCAT
1 ATGCCAAGCCCACCACTTCAT
47735 ATGCCA
1 ATGCCA
47741 TCTCCGCAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.42, G:0.12, T:0.21
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:47770 original size:21 final size:21
Alignment explanation
Indices: 47744--47858 Score: 153
Period size: 21 Copynumber: 5.5 Consensus size: 21
47734 TATGCCATCT
*
47744 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCTAGC
*
47765 CCGCAGGGTTATATTCCTAGC
1 CCGCAGGGTTACATTCCTAGC
* *
47786 CCGCCA-GGTTACATTCCAATC
1 CCG-CAGGGTTACATTCCTAGC
47807 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATTCCTAGC
*
47828 CCGCTA-GGTTACATGCCTAGC
1 CCGC-AGGGTTACATTCCTAGC
47849 CCGCAGGGTT
1 CCGCAGGGTT
47859 TTATACCGTA
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.04
21 76 0.93
22 3 0.04
ACGTcount: A:0.19, C:0.33, G:0.24, T:0.23
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCTAGC
Found at i:47787 original size:63 final size:63
Alignment explanation
Indices: 47714--47850 Score: 165
Period size: 63 Copynumber: 2.2 Consensus size: 63
47704 TCCACTTCAT
*
47714 ATGCCAAGCCCACCA-GTT-CATATGCC-ATCTCCGCAGGGTTACATTCCGAGCCCGC-AGGGTT
1 ATGCCTAGCCCACCAGGTTACAT-T-CCAATC-CCGCAGGGTTACATTCCGAGCCCGCTA-GGTT
*
47775 AT
62 AC
* * *
47777 ATTCCTAGCCCGCCAGGTTACATTCCAATCCCGCAGGGTTACATTCCTAGCCCGCTAGGTTAC
1 ATGCCTAGCCCACCAGGTTACATTCCAATCCCGCAGGGTTACATTCCGAGCCCGCTAGGTTAC
47840 ATGCCTAGCCC
1 ATGCCTAGCCC
47851 GCAGGGTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
63 53 0.83
64 8 0.12
65 3 0.05
ACGTcount: A:0.21, C:0.35, G:0.20, T:0.23
Consensus pattern (63 bp):
ATGCCTAGCCCACCAGGTTACATTCCAATCCCGCAGGGTTACATTCCGAGCCCGCTAGGTTAC
Found at i:48428 original size:35 final size:35
Alignment explanation
Indices: 48374--48472 Score: 137
Period size: 35 Copynumber: 2.9 Consensus size: 35
48364 GATAAATGTT
* *
48374 TTTAAAATACAAATTATATTATTCAAAATTCAAAA
1 TTTAAAATAAAAATTATATTATTCGAAATTCAAAA
* *
48409 TTTAAAATAAAAATAATATTATTCGAAATTTAAAA
1 TTTAAAATAAAAATTATATTATTCGAAATTCAAAA
* *
48444 -TTAAAATATAAATTATAATATTCGAAATT
1 TTTAAAATAAAAATTATATTATTCGAAATT
48473 TAACATTAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 26 0.46
35 31 0.54
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (35 bp):
TTTAAAATAAAAATTATATTATTCGAAATTCAAAA
Found at i:48432 original size:28 final size:29
Alignment explanation
Indices: 48401--48459 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
48391 ATTATTCAAA
48401 ATTCAAAATTTAAAA-TAAAA-ATAATATT
1 ATTCAAAATTTAAAATTAAAATATAA-ATT
*
48429 ATTCGAAATTTAAAATTAAAATATAAATT
1 ATTCAAAATTTAAAATTAAAATATAAATT
48458 AT
1 AT
48460 AATATTCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 14 0.50
29 10 0.36
30 4 0.14
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (29 bp):
ATTCAAAATTTAAAATTAAAATATAAATT
Found at i:48466 original size:34 final size:34
Alignment explanation
Indices: 48375--48482 Score: 144
Period size: 34 Copynumber: 3.1 Consensus size: 34
48365 ATAAATGTTT
* * *
48375 TTAAAATACAAATTATATTATTCAAAATTCAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
*
48409 TTTAAAATAAAAATAATATTATTCGAAATTTAAAA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAAAA
* * *
48444 TTAAAATATAAATTATAATATTCGAAATTTAACA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
48478 TTAAA
1 TTAAA
48483 TTTCAACTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
34 35 0.54
35 30 0.46
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (34 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAAA
Found at i:48735 original size:23 final size:23
Alignment explanation
Indices: 48716--48768 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
48706 ACATTTATTC
48716 AATTTATCCATAACATTTTATCT
1 AATTTATCCATAACATTTTATCT
48739 AATTTATCCATAACATTTTATCT
1 AATTTATCCATAACATTTTATCT
48762 AATTTAT
1 AATTTAT
48769 TCAAACTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (23 bp):
AATTTATCCATAACATTTTATCT
Found at i:48737 original size:14 final size:14
Alignment explanation
Indices: 48718--48760 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
48708 ATTTATTCAA
48718 TTTATCCATAACAT
1 TTTATCCATAACAT
48732 TTTAT-C-T-A-A-
1 TTTATCCATAACAT
48741 TTTATCCATAACAT
1 TTTATCCATAACAT
48755 TTTATC
1 TTTATC
48761 TAATTTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
9 5 0.21
10 2 0.08
11 2 0.08
12 2 0.08
13 2 0.08
14 11 0.46
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTATCCATAACAT
Found at i:49136 original size:128 final size:128
Alignment explanation
Indices: 48902--49229 Score: 584
Period size: 128 Copynumber: 2.6 Consensus size: 128
48892 ACAATCCATC
48902 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * * *
48967 GGAAGGCGCGCCCCCAGGAACGCGCCTTCAAGTTCCTTGAGAAATAATATGTACTGATATGAA
66 GGAAGGCGCGCCCCCAGGAACGAGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
*
49030 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGATAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
**
49095 GGAAGGCGCGCCCCTGGGAACGAGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCAGGAACGAGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
49158 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
49223 AGAAGGC
66 GGAAGGC
49230 TTGAGTCGAT
Statistics
Matches: 191, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
128 191 1.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (128 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
GGAAGGCGCGCCCCCAGGAACGAGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
Found at i:54163 original size:130 final size:130
Alignment explanation
Indices: 54022--54269 Score: 424
Period size: 130 Copynumber: 1.9 Consensus size: 130
54012 TATTTATATA
* *
54022 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGGCATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* *
54087 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTTACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
54152 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * * *
54217 TTAACACATGATCATGATATGTGTTATTGGTGACACATGTCACCTCCTAATTA
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTA
54270 GAAGAAAATT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 110 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:54300 original size:130 final size:129
Alignment explanation
Indices: 54036--54300 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
54026 ATTTGGTCCT
* * *
54036 AAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGGCATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* *** * * **** *
54101 TGACACGTGTCATTGGTGACACATGTTACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
54166 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * * * *
54231 TGATATGTGTTATTGGTGACACATGTCACCTCCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
54295 -A
128 CA
54296 AAATT
1 AAATT
54301 TGGGTCTTGG
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 100 0.88
132 8 0.07
133 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:54759 original size:16 final size:18
Alignment explanation
Indices: 54738--54771 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
54728 ATTTCTTAAT
54738 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
54754 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
54772 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:58009 original size:21 final size:21
Alignment explanation
Indices: 57983--58022 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57973 CAGAACCCCA
*
57983 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
58004 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
58023 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:61895 original size:22 final size:21
Alignment explanation
Indices: 61853--61892 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
61843 GAGTTTGTTT
*
61853 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
61874 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
61893 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:63589 original size:11 final size:10
Alignment explanation
Indices: 63557--63591 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
63547 GTTTGATGCT
63557 TTCTCTTTGA
1 TTCTCTTTGA
63567 TTCTCTTTGA
1 TTCTCTTTGA
63577 TTCTCTCTTGA
1 TTCTCT-TTGA
63588 TTCT
1 TTCT
63592 AGTTGCTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.09, C:0.23, G:0.09, T:0.60
Consensus pattern (10 bp):
TTCTCTTTGA
Found at i:64206 original size:18 final size:18
Alignment explanation
Indices: 64167--64205 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
64157 ATGTTTCAAC
64167 ATATACATCTAAATATAA
1 ATATACATCTAAATATAA
*
64185 ATATACAT-T-TATATAA
1 ATATACATCTAAATATAA
64201 ATATA
1 ATATA
64206 TTTTTATTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 1 0.05
18 8 0.40
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (18 bp):
ATATACATCTAAATATAA
Found at i:64285 original size:21 final size:21
Alignment explanation
Indices: 64261--64300 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
64251 TATTACCTTA
64261 AATTGAAGTATTTTAGAATCT
1 AATTGAAGTATTTTAGAATCT
64282 AATTGAAGTATTTTAGAAT
1 AATTGAAGTATTTTAGAAT
64301 TTAGGGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (21 bp):
AATTGAAGTATTTTAGAATCT
Found at i:64321 original size:35 final size:35
Alignment explanation
Indices: 64272--64357 Score: 109
Period size: 35 Copynumber: 2.5 Consensus size: 35
64262 ATTGAAGTAT
** * *
64272 TTTAGAATCTAATTGAAGTATTTTAGAATTTAGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
* *
64307 TTTAGAATAAAATTGAATTACTTTAGAAATTGGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
*
64342 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
64358 TGACTGTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.40
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
Found at i:65612 original size:130 final size:129
Alignment explanation
Indices: 65471--65717 Score: 413
Period size: 130 Copynumber: 1.9 Consensus size: 129
65461 TATTTATATA
* *
65471 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGGCATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* *
65536 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTTACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACGTGTCATTGGTGACA-ATGTCACCACCTAATTATTTATATATGCT
65601 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * * *
65666 TTAACACATGATCATGATATGTGTTATTGGTGACAATGTCACCTCCTAATTA
66 TTAACACATGATCATGACACGTGTCATTGGTGACAATGTCACCACCTAATTA
65718 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
129 15 0.14
130 94 0.86
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (129 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
TTAACACATGATCATGACACGTGTCATTGGTGACAATGTCACCACCTAATTATTTATATATGCT
Found at i:66199 original size:16 final size:18
Alignment explanation
Indices: 66180--66213 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
66170 ATTTCTTAAT
66180 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
66196 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
66214 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:66270 original size:30 final size:30
Alignment explanation
Indices: 66213--66270 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
66203 TAAATGATTC
* **
66213 ATACATTAATATATGAATATATTTTTATTT
1 ATACATTAATATATAAATATACATTTATTT
66243 ATACATCTAA-ATATAAATATACATTTAT
1 ATACAT-TAATATATAAATATACATTTAT
66271 ATAAATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.47
Consensus pattern (30 bp):
ATACATTAATATATAAATATACATTTATTT
Found at i:66359 original size:21 final size:21
Alignment explanation
Indices: 66335--66377 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
66325 TATTACCTTA
66335 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
66356 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
66377 A
1 A
66378 GGGTTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.47
Consensus pattern (21 bp):
AATTGAAGTATTTTAGAATTT
Found at i:66395 original size:35 final size:35
Alignment explanation
Indices: 66346--66429 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
66336 ATTGAAGTAT
** * *
66346 TTTAGAATTTAATTGAAGTATTTTAGAATTTAGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
* * *
66381 TTTAGAATAAAATTGAATTACTTTGGAAATTGGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
*
66416 TTTAGAATGAAATT
1 TTTAGAATAAAATT
66430 AATGACTGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.37, C:0.01, G:0.20, T:0.42
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
Found at i:76952 original size:21 final size:21
Alignment explanation
Indices: 76836--76978 Score: 136
Period size: 21 Copynumber: 6.8 Consensus size: 21
76826 TTGTACCAAG
*
76836 GACGAGAAGAGCATTCATCAA
1 GACGAGAAGACCATTCATCAA
*
76857 GACGAGAATG-TCATTCATCAA
1 GACGAGAA-GACCATTCATCAA
76878 GACGAGAATG-CCATTCATCAA
1 GACGAGAA-GACCATTCATCAA
*
76899 GACGAGAAGGCCATTCATCAA
1 GACGAGAAGACCATTCATCAA
* * *
76920 GATGAGAGGACCTTTCAT-AA
1 GACGAGAAGACCATTCATCAA
76940 CGACGAGAAGACC-TTCAT-AA
1 -GACGAGAAGACCATTCATCAA
76960 CGAC-ATGAAGACCACTTCA
1 -GACGA-GAAGACCA-TTCA
76979 CATTGGAGGT
Statistics
Matches: 108, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
19 1 0.01
20 21 0.19
21 81 0.75
22 5 0.05
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (21 bp):
GACGAGAAGACCATTCATCAA
Found at i:81067 original size:125 final size:125
Alignment explanation
Indices: 80845--81070 Score: 346
Period size: 125 Copynumber: 1.8 Consensus size: 125
80835 ATGGCACGAT
* **
80845 TGAACCCCCATCATTTTGAAATGACAAGATTCAGACAAAGAAGGCATCAAGAATGAGCCTTACAA
1 TGAACCCACATCATGATGAAATGACAAGATTCAGACAAAGAAGGCATCAAGAATGAGCCTTACAA
* *
80910 TTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTCGGGGCGCGAC
66 TTTGAGATGATGAGGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTCGGGGCGCGAC
* * ** *
80970 TGAACCCACATCATGATGAAATTACAAGATTCAGACCAAGAAGGCATTGAGAATGAGCCTTATAA
1 TGAACCCACATCATGATGAAATGACAAGATTCAGACAAAGAAGGCATCAAGAATGAGCCTTACAA
81035 TTTGAGAT-ATTGAGGCATTTTGAAGGCCCGTACCAG
66 TTTGAGATGA-TGAGGCATTTTGAAGGCCCGTACCAG
81071 AATAAAATAA
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
124 1 0.01
125 89 0.99
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (125 bp):
TGAACCCACATCATGATGAAATGACAAGATTCAGACAAAGAAGGCATCAAGAATGAGCCTTACAA
TTTGAGATGATGAGGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTCGGGGCGCGAC
Found at i:82323 original size:36 final size:36
Alignment explanation
Indices: 82283--82517 Score: 201
Period size: 36 Copynumber: 6.5 Consensus size: 36
82273 AAGTCAATCT
82283 TAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCC
1 TAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCC
* *
82319 TAAGCCTTCACCGGAGAGTAGTGAAGCAAACCAT-C
1 TAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCC
* * *
82354 TGAAGCCTTCACCGGAGA-ATAGTGAAGCAATCAAT-C
1 T-AAGCCTTCACCGAAGAGA-AGTGAAGCAAACCATCC
* * *
82390 TGAAGCCTTCACCGGAGA-ATAGTGAAGCAAACAATCA
1 T-AAGCCTTCACCGAAGAGA-AGTGAAGCAAACCATCC
* * *
82427 TAAGTCTTCACC-AGAGAGTAGTGAAGCAAACCATCT
1 TAAGCCTTCACCGA-AGAGAAGTGAAGCAAACCATCC
* * * * * **
82463 TAAGTCTTCACCAAAAAGTAGTGAAGCAGATCCATTT
1 TAAGCCTTCACCGAAGAGAAGTGAAGCA-AACCATCC
* *
82500 TAAGCCTTCTCAGAAGAG
1 TAAGCCTTCACCGAAGAG
82518 TGTTGGAACA
Statistics
Matches: 172, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
35 2 0.01
36 149 0.87
37 21 0.12
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (36 bp):
TAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCC
Found at i:82361 original size:72 final size:72
Alignment explanation
Indices: 82279--82517 Score: 259
Period size: 72 Copynumber: 3.3 Consensus size: 72
82269 GAGCAAGTCA
82279 ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCCTAAGCCTTCACCGGAGAGTAGTGAA
1 ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCCTAAGCCTTCACCGGAGAGTAGTGAA
82344 GCAAACC
66 GCAAACC
* * * * *
82351 ATCTGAAGCCTTCACCGGAGA-ATAGTGAAGCAATCAAT-CTGAAGCCTTCACCGGAGAATAGTG
1 ATCTTAAGCCTTCACCGAAGAGA-AGTGAAGCAAACCATCCT-AAGCCTTCACCGGAGAGTAGTG
*
82414 AAGCAAACA
64 AAGCAAACC
* * * * * ** *
82423 ATCATAAGTCTTCACC-AGAGAGTAGTGAAGCAAACCATCTTAAGTCTTCACCAAAAAGTAGTGA
1 ATCTTAAGCCTTCACCGA-AGAGAAGTGAAGCAAACCATCCTAAGCCTTCACCGGAGAGTAGTGA
*
82487 AGCAGATCC
65 AGCA-AACC
* * *
82496 ATTTTAAGCCTTCTCAGAAGAG
1 ATCTTAAGCCTTCACCGAAGAG
82518 TGTTGGAACA
Statistics
Matches: 134, Mismatches: 26, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
71 3 0.02
72 112 0.84
73 18 0.13
74 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (72 bp):
ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCCTAAGCCTTCACCGGAGAGTAGTGAA
GCAAACC
Found at i:82485 original size:108 final size:108
Alignment explanation
Indices: 82270--82517 Score: 320
Period size: 108 Copynumber: 2.3 Consensus size: 108
82260 ATGAGATTGG
* * *
82270 AGCAAGTCAATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCCTAAGCCTTCACCGGAG
1 AGCAA-TCAATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACAATCATAAGCCTTCACCAGAG
* *
82335 AGTAGTGAAGCAAACCATCTGAAGCCTTCACCGGAGAATAGTGA
65 AGTAGTGAAGCAAACCATCTGAAGCCTTCACCGAAAAATAGTGA
* * *
82379 AGCAATCAATCTGAAGCCTTCACCGGAGA-ATAGTGAAGCAAACAATCATAAGTCTTCACCAGAG
1 AGCAATCAATCTTAAGCCTTCACCGAAGAGA-AGTGAAGCAAACAATCATAAGCCTTCACCAGAG
* *
82443 AGTAGTGAAGCAAACCATCTTAAGTCTTCACC-AAAAAGTAGTGA
65 AGTAGTGAAGCAAACCATCTGAAGCCTTCACCGAAAAA-TAGTGA
* * * *
82487 AGCAGATCCATTTTAAGCCTTCTCAGAAGAG
1 AGCA-ATCAATCTTAAGCCTTCACCGAAGAG
82518 TGTTGGAACA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
107 4 0.03
108 91 0.76
109 24 0.20
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (108 bp):
AGCAATCAATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACAATCATAAGCCTTCACCAGAGA
GTAGTGAAGCAAACCATCTGAAGCCTTCACCGAAAAATAGTGA
Found at i:83614 original size:55 final size:55
Alignment explanation
Indices: 82879--83633 Score: 925
Period size: 54 Copynumber: 13.9 Consensus size: 55
82869 TGAAGCAAAT
* * **
82879 GAAGATTACTT-GAGTTCCATACTTCCTGAAGAAAGAGCGAAGCGAACCCGTAAGAA
1 GAAGATTA-TTCGAGTTCTATACTTCCTGAAGAAAGAG-GGAGCGAACCCGTTTGAA
* *
82935 GAAGATTCTT-GAGTTCTATACTTCCTGAAGAAAGAGGAAGCGAACCCGTTTGAA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
**
82989 GAAGATTA-TCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTTCA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
* *
83043 GAAGATTATTCGAGTTCTATAC-TCCTTAATGAAAGAAGGAGCGAACCCGTTTGAA
1 GAAGATTATTCGAGTTCTATACTTCCTGAA-GAAAGAGGGAGCGAACCCGTTTGAA
* * *
83098 GAA-ATT-TCCAAGTTCTATACTTCCTGAAGAAAGAGGAAGCGAACCCGTTTGAA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
**
83151 GAAGATTA-TCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTTCA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
* *
83205 GAAGATTATTCGAGTTCTATAC-TCCTTAATGAAAGAAGGAGCGAACCCGTTTGAA
1 GAAGATTATTCGAGTTCTATACTTCCTGAA-GAAAGAGGGAGCGAACCCGTTTGAA
* * *
83260 GAA-ATT-TCCAAGTTCTATACTTCCTGAAGAAAGAGGAAGCGAACCCGTTTGAA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
**
83313 GAAGATTA-TCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTTCA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
* * *
83367 GAAGAATTGTTCGAGTTCTATACTCCCTGAAGAAAGAGCGAAGCGAACCCGTTTGAA
1 GAAG-ATTATTCGAGTTCTATACTTCCTGAAGAAAGAG-GGAGCGAACCCGTTTGAA
* *
83424 GAAGATGT-TT-GAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGAA
1 GAAGAT-TATTCGAGTTCTATACTTCCTGA-AGAAAGAGGGAGCGAACCCGTTTGAA
* * * * * * *
83478 GAAAATT-TCCAAGATCTATACTCCCT-AGAGAAA-AGGGAGAGAACTCGTTTGAA
1 GAAGATTATTCGAGTTCTATACTTCCTGA-AGAAAGAGGGAGCGAACCCGTTTGAA
* * * * * *
83531 GAATA-TGTCCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCTGTTTGCA
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
* *
83585 GAAGATTATTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGGACCCG
1 GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCG
83634 ATTATTGAAG
Statistics
Matches: 616, Mismatches: 62, Indels: 43
0.85 0.09 0.06
Matches are distributed among these distances:
52 1 0.00
53 123 0.20
54 266 0.43
55 168 0.27
56 38 0.06
57 20 0.03
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (55 bp):
GAAGATTATTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
Found at i:89246 original size:33 final size:34
Alignment explanation
Indices: 89204--89274 Score: 135
Period size: 33 Copynumber: 2.1 Consensus size: 34
89194 GAGTTAAAAG
89204 AATACAACTATGCGTAGTAAAATGC-TAATAGAT
1 AATACAACTATGCGTAGTAAAATGCATAATAGAT
89237 AATACAACTATGCGTAGTAAAATGCATAATAGAT
1 AATACAACTATGCGTAGTAAAATGCATAATAGAT
89271 AATA
1 AATA
89275 GGTATGATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 25 0.68
34 12 0.32
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (34 bp):
AATACAACTATGCGTAGTAAAATGCATAATAGAT
Found at i:89406 original size:189 final size:191
Alignment explanation
Indices: 89081--89431 Score: 679
Period size: 189 Copynumber: 1.8 Consensus size: 191
89071 CAATGTTCAT
*
89081 TAATTGGTATGATTTTTGGTTTCAAGTATGCTAGTGAGATTTTGTATGTTTAGGAATATTAAAGT
1 TAATAGGTATGATTTTTGGTTTCAAGTATGCTAGTGAGATTTTGTATGTTTAGGAATATTAAAGT
89146 GAGATAAGTTGATTTGGGTGAGTATAGTTAAGTTTAAAGTATTGAAAGGAGTTAAAAGAATACAA
66 GAGATAAGTTGATTTGGGTGAGTATAGTTAAGTTTAAAGTATTGAAAGGAGTTAAAAGAATACAA
89211 CTATGCGTAGTAAAATGC-T-AATAGATAATACAACTATGCGTAGTAAAATGCATAATAGA
131 CTATGCGTAGTAAAATGCATAAATAGATAATACAACTATGCGTAGTAAAATGCATAATAGA
89270 TAATAGGTATGATTTTTGGTTTCAAGTATGCTAGTGAGATTTTGTATGTTTAGGAATATTAAAGT
1 TAATAGGTATGATTTTTGGTTTCAAGTATGCTAGTGAGATTTTGTATGTTTAGGAATATTAAAGT
89335 GAGATAAGTTGATTTGGGTGAGTATAGTTAAGTTTAAAGTATTGAAAGGAGTTAAAAGAATACAA
66 GAGATAAGTTGATTTGGGTGAGTATAGTTAAGTTTAAAGTATTGAAAGGAGTTAAAAGAATACAA
89400 CTATGCGTAGTAAAATGCATAAATAGATAATA
131 CTATGCGTAGTAAAATGCATAAATAGATAATA
89432 GGCTAATAGC
Statistics
Matches: 159, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
189 147 0.92
190 1 0.01
191 11 0.07
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.35
Consensus pattern (191 bp):
TAATAGGTATGATTTTTGGTTTCAAGTATGCTAGTGAGATTTTGTATGTTTAGGAATATTAAAGT
GAGATAAGTTGATTTGGGTGAGTATAGTTAAGTTTAAAGTATTGAAAGGAGTTAAAAGAATACAA
CTATGCGTAGTAAAATGCATAAATAGATAATACAACTATGCGTAGTAAAATGCATAATAGA
Found at i:91100 original size:64 final size:62
Alignment explanation
Indices: 91023--91149 Score: 175
Period size: 65 Copynumber: 2.0 Consensus size: 62
91013 TTTAAATTGA
* * *
91023 TTGTAT-AAGTTTTTAGTATTGCATTTATTCTCGTATGTTTGTTTTTTCAAAAAGGTGTTTGTGT
1 TTGTATAAATTTTTTAGTATTGCATTTATTCTCGTATGTTT-ATTTTT-AAAAA-GTGTTCGTGT
**
91087 TTGTATAAATTTTTTAGTATTGTGTTTATTCTCGTATGTTTATTTTTAAAAAGTGTTCGTGT
1 TTGTATAAATTTTTTAGTATTGCATTTATTCTCGTATGTTTATTTTTAAAAAGTGTTCGTGT
91149 T
1 T
91150 CGATTCATTT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 10 0.18
63 5 0.09
64 11 0.19
65 31 0.54
ACGTcount: A:0.21, C:0.06, G:0.17, T:0.56
Consensus pattern (62 bp):
TTGTATAAATTTTTTAGTATTGCATTTATTCTCGTATGTTTATTTTTAAAAAGTGTTCGTGT
Found at i:92979 original size:18 final size:19
Alignment explanation
Indices: 92942--92983 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
92932 TTAAAAAAAA
92942 TAATT-TTTTTATATAATT
1 TAATTATTTTTATATAATT
*
92960 TAATTATTTTTATAT-TTT
1 TAATTATTTTTATATAATT
92978 TAATTA
1 TAATTA
92984 ATAATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TAATTATTTTTATATAATT
Found at i:95644 original size:15 final size:15
Alignment explanation
Indices: 95620--95649 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
95610 GGTGCTGTTG
*
95620 GTACATTAATATCTT
1 GTACAATAATATCTT
95635 GTACAATAATATCTT
1 GTACAATAATATCTT
95650 TAGGTAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (15 bp):
GTACAATAATATCTT
Found at i:113482 original size:23 final size:23
Alignment explanation
Indices: 113456--113503 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
113446 ATAAAGTACA
*
113456 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
*
113479 ATAATATAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
113502 AT
1 AT
113504 TTACCTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:114014 original size:23 final size:23
Alignment explanation
Indices: 113979--114051 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
113969 ATACTTTACA
*
113979 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
114002 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
114025 ATATAAGTGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
114048 ATAT
1 ATAT
114052 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:114447 original size:23 final size:23
Alignment explanation
Indices: 114421--114483 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
114411 ATATAACCAC
*
114421 TACCTATTACATTATATAAATGA
1 TACCTATTACATTATATAAACGA
* *
114444 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
114467 TACCTATTACATCATAT
1 TACCTATTACATTATAT
114484 TTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:114878 original size:23 final size:23
Alignment explanation
Indices: 114852--114914 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
114842 ATATAACCAC
114852 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
114875 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
114898 TACCTATTACATCATAT
1 TACCTATTACATTATAT
114915 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:115216 original size:430 final size:431
Alignment explanation
Indices: 113813--115977 Score: 4014
Period size: 430 Copynumber: 5.0 Consensus size: 431
113803 ATATTTATTG
113813 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
113878 AAATTAATATCTTAAAACTCACTAAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
113943 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
* *
114008 ACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
* *
114073 TGTCCATACTTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATATAATTTATGTTTCAATT
261 TGTCCATAC-TTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATT
*
114138 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAA
325 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
*
114203 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAAAA
390 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
*
114245 TTTTTAATTTAATAATAATATATATCGTAACATAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
114310 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
*
114375 TATAGACACTTTTATAAAAAGGATAGGTACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
*
114440 ATGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
*
114505 TGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
114570 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
114635 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
391 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
114676 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
114741 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
114806 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
114871 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
*
114936 TGTTCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
115000 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
*
115065 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAA
391 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
*
115106 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
115171 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
*
115236 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTAAATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
* *
115301 ATGATACCTATTACATTATATAAGCGTTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
115366 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
115430 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAAAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
* *
115495 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAAAA
391 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
* *
115536 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTAGAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
115601 AAATTAATATCTTAAAACTCACTCTAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
115666 TATAGACACTTTTATAAAAATGATAGATACTTTACAATATAACCACTACATATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
115731 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
115796 TGTCCATACTTTTTATAAAAAGGATCGATACTT-TGTTTAAAGTTATGTAATTTATGTTTCAATT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCT-TTTAAAGTTATGTAATTTATGTTTCAATT
115860 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
325 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
115925 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
390 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
*
115967 -TTTAAATTTAA
1 TTTTTAATTTAA
115978 CAACATTAAC
Statistics
Matches: 1694, Mismatches: 37, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
429 1 0.00
430 852 0.50
431 581 0.34
432 260 0.15
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (431 bp):
TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
Found at i:115299 original size:23 final size:22
Alignment explanation
Indices: 115272--115323 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
115262 ATACTTTACA
115272 ATATAACCACTACCTATTAAATT
1 ATATAACCA-TACCTATTAAATT
** *
115295 ATATAAATGATACCTATTACATT
1 ATAT-AACCATACCTATTAAATT
115318 ATATAA
1 ATATAA
115324 GCGTTACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 20 0.80
24 3 0.12
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATAACCATACCTATTAAATT
Found at i:115331 original size:23 final size:23
Alignment explanation
Indices: 115282--115344 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
115272 ATATAACCAC
* *
115282 TACCTATTAAATTATATAAATGA
1 TACCTATTACATTATATAAACGA
* *
115305 TACCTATTACATTATATAAGCGT
1 TACCTATTACATTATATAAACGA
*
115328 TACCTATTACATCATAT
1 TACCTATTACATTATAT
115345 TTTTACCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.40
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:115401 original size:861 final size:861
Alignment explanation
Indices: 113813--115977 Score: 4030
Period size: 861 Copynumber: 2.5 Consensus size: 861
113803 ATATTTATTG
113813 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
113878 AAATTAATATCTTAAAACTCACTAAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
113943 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
* *
114008 ACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
* *
114073 TGTCCATACTTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATATAATTTATGTTTCAATT
261 TGTCCATAC-TTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATT
*
114138 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAA
325 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
*
114203 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAAAATTTTTAATTTAATAATAATATAT
390 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATAT
*
114268 ATCGTAACATAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
455 ATCGTAACATAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
114333 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGA
520 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGA
* *
114398 TAGGTACTTTACAATATAACCACTACCTATTACATTATATAAATGATACCTATTACATTATATAA
585 TAGATACTTTACAATATAACCACTACCTATTAAATTATATAAATGATACCTATTACATTATATAA
*
114463 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATG
650 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
114528 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTT
715 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTT
* * *
114593 CCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTT
779 CCACCTACAATATTAATTTAATAATTTCATTTACAAAAAAAATTATTTGATTGTTTTGATATTTG
*
114658 ATAAAATAATATTTAGAA
844 ATAAAATAATATTTAAAA
114676 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
114741 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
114806 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
114871 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
*
114936 TGTTCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
115000 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
*
115065 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATA
391 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATA
*
115130 TCGTAACGTAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
456 TCGTAACATAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
*
115195 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGAT
521 AAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGAT
115260 AGATACTTTACAATATAACCACTACCTATTAAATTATATAAATGATACCTATTACATTATATAAG
586 AGATACTTTACAATATAACCACTACCTATTAAATTATATAAATGATACCTATTACATTATATAAG
*
115325 CGTTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
651 CGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
115390 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCC
716 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCC
115455 ACCTACAATATTAATTTAATAATTTCATTTACAAAAAAAATTATTTGATTGTTTTGATATTTGAT
781 ACCTACAATATTAATTTAATAATTTCATTTACAAAAAAAATTATTTGATTGTTTTGATATTTGAT
115520 AAAATAATATTTAAAA
846 AAAATAATATTTAAAA
* *
115536 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAAGAAATCATTAGACGCCTAGAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
115601 AAATTAATATCTTAAAACTCACTCTAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
115666 TATAGACACTTTTATAAAAATGATAGATACTTTACAATATAACCACTACATATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
115731 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
115796 TGTCCATACTTTTTATAAAAAGGATCGATACTT-TGTTTAAAGTTATGTAATTTATGTTTCAATT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCT-TTTAAAGTTATGTAATTTATGTTTCAATT
115860 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
325 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
*
115925 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA-TTTAAATTTAA
390 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAA
115978 CAACATTAAC
Statistics
Matches: 1270, Mismatches: 30, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
859 1 0.00
860 428 0.34
861 527 0.41
862 51 0.04
863 263 0.21
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (861 bp):
TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATA
TCGTAACATAAAAAAGAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGAT
AGATACTTTACAATATAACCACTACCTATTAAATTATATAAATGATACCTATTACATTATATAAG
CGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCC
ACCTACAATATTAATTTAATAATTTCATTTACAAAAAAAATTATTTGATTGTTTTGATATTTGAT
AAAATAATATTTAAAA
Found at i:115742 original size:23 final size:23
Alignment explanation
Indices: 115716--115774 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
115706 AACCACTACA
115716 TATTACATTATATAAACGATACC
1 TATTACATTATATAAACGATACC
* *
115739 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACC
*
115762 TATTACATCATAT
1 TATTACATTATAT
115775 TTTTACCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACC
Found at i:116149 original size:25 final size:25
Alignment explanation
Indices: 116121--116185 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
116111 ACTCAAAAGA
*
116121 TGTATATACCTAAATATGTAGTTAT
1 TGTACATACCTAAATATGTAGTTAT
116146 TGTACATACCTAAATATGTAGTTAT
1 TGTACATACCTAAATATGTAGTTAT
116171 TGTACATACCTAAAT
1 TGTACATACCTAAAT
116186 TTAATGATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (25 bp):
TGTACATACCTAAATATGTAGTTAT
Found at i:118953 original size:183 final size:183
Alignment explanation
Indices: 118645--119320 Score: 1230
Period size: 183 Copynumber: 3.7 Consensus size: 183
118635 TTAAAATTAC
118645 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
*
118709 TATTAGAAAATGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGT
65 TATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGT
* *
118774 TATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
130 TATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
118828 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
118892 TATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGT
65 TATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGT
*
118957 TATATTACAAAATTATCTATTACATTATAATTATGGGTTCAGATGTGTAAATGT
130 TATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
119011 CGACACTTTTTAACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
119076 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
119141 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
* *
119194 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATTTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* * *
119259 ATTAAAAAGTGTTGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTTATACCG
66 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCG
119321 ATAGCATTGC
Statistics
Matches: 481, Mismatches: 11, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
183 478 0.99
184 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (183 bp):
CGACACTTTTTTACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:119737 original size:23 final size:23
Alignment explanation
Indices: 119701--119773 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
119691 ATACTTTACA
*
119701 ATATAACCACTACCTATTACATT
1 ATATAAACACTACCTATTACATT
119724 ATATAAACGA-TACCTATTACATT
1 ATATAAAC-ACTACCTATTACATT
* *
119747 ATATAAGCACTACCTATTACATC
1 ATATAAACACTACCTATTACATT
119770 ATAT
1 ATAT
119774 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
22 1 0.02
23 43 0.96
24 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATAAACACTACCTATTACATT
Found at i:120159 original size:16 final size:16
Alignment explanation
Indices: 120134--120167 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
120124 ATCTATTACA
* *
120134 TTTTTCAATCGGCACT
1 TTTTTAAATCGACACT
120150 TTTTTAAATCGACACT
1 TTTTTAAATCGACACT
120166 TT
1 TT
120168 GTTGTGGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.09, T:0.47
Consensus pattern (16 bp):
TTTTTAAATCGACACT
Found at i:121366 original size:3 final size:3
Alignment explanation
Indices: 121358--121444 Score: 93
Period size: 3 Copynumber: 29.0 Consensus size: 3
121348 ACTTGTTTGG
* * *
121358 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC ATC ATC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * * *
121406 ATC GTC AGC TTC ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
121445 GTCAGCTTCA
Statistics
Matches: 66, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:121375 original size:12 final size:12
Alignment explanation
Indices: 121358--121461 Score: 109
Period size: 12 Copynumber: 8.7 Consensus size: 12
121348 ACTTGTTTGG
121358 ATCATCATCTTC
1 ATCATCATCTTC
*
121370 ATCATCATCATC
1 ATCATCATCTTC
* *
121382 ATCATCGTCATC
1 ATCATCATCTTC
121394 ATCATCATCTTC
1 ATCATCATCTTC
* *
121406 ATCGTCAGCTTC
1 ATCATCATCTTC
* *
121418 ATCGTCATCATC
1 ATCATCATCTTC
*
121430 ATCGTCATCTTC
1 ATCATCATCTTC
* *
121442 ATCGTCAGCTTC
1 ATCATCATCTTC
*
121454 ATCTTCAT
1 ATCATCAT
121462 TGACCGCTTG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 80 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.38
Consensus pattern (12 bp):
ATCATCATCTTC
Found at i:121445 original size:36 final size:36
Alignment explanation
Indices: 121358--121461 Score: 145
Period size: 36 Copynumber: 2.9 Consensus size: 36
121348 ACTTGTTTGG
* * * *
121358 ATCATCATCTTCATCATCATCATCATCATCGTCATC
1 ATCATCATCTTCATCGTCAGCTTCATCATCATCATC
*
121394 ATCATCATCTTCATCGTCAGCTTCATCGTCATCATC
1 ATCATCATCTTCATCGTCAGCTTCATCATCATCATC
* *
121430 ATCGTCATCTTCATCGTCAGCTTCATCTTCAT
1 ATCATCATCTTCATCGTCAGCTTCATCATCAT
121462 TGACCGCTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.38
Consensus pattern (36 bp):
ATCATCATCTTCATCGTCAGCTTCATCATCATCATC
Found at i:121470 original size:18 final size:18
Alignment explanation
Indices: 121398--121461 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
121388 GTCATCATCA
*
121398 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGACAGCT
* * *
121416 TCATCGTCATC-ATCATCG
1 TCATCTTCATCGA-CAGCT
*
121434 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGACAGCT
121452 TCATCTTCAT
1 TCATCTTCAT
121462 TGACCGCTTG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.39
Consensus pattern (18 bp):
TCATCTTCATCGACAGCT
Found at i:123538 original size:200 final size:200
Alignment explanation
Indices: 122923--123895 Score: 1803
Period size: 199 Copynumber: 4.9 Consensus size: 200
122913 TTTAAATTAG
122923 TATCGACACAAACT-AAAAAGTGTCGACACATTATTTAGACATATAT-TCTCATAAAACCGGTAT
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATAT-TCTCTCATAAAACCGGTAT
122986 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGG-TTCGATGTTTTTGGG
65 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGG
*
123050 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
130 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA
123115 CAAAAA
195 CAAAAA
*
123121 TATTGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
123186 CTTGTACCGGTTAGATTGAAAAATTACATATTACGTTATACTTTTGGG-TTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
* *
123250 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
123315 AAAAA
196 AAAAA
*
123320 TATCGACACAATCTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
123385 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
123450 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
123515 AAAAA
196 AAAAA
*
123520 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTTATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
123585 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
123650 TCGACA-TTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
123714 AAAAA
196 AAAAA
123719 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
123784 CTTGTATCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
* * *
123849 TCGACACTTTTTATATATGGTTTGACACTTTATGGTTGCACCATGTT
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
123896 GGCCATATTG
Statistics
Matches: 756, Mismatches: 15, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
198 14 0.02
199 487 0.64
200 255 0.34
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (200 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
AAAAA
Found at i:123674 original size:399 final size:399
Alignment explanation
Indices: 122923--123895 Score: 1801
Period size: 399 Copynumber: 2.4 Consensus size: 399
122913 TTTAAATTAG
122923 TATCGACACAAACT-AAAAAGTGTCGACACATTATTTAGACATATAT-TCTCATAAAACCGGTAT
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATAT-TCTCTCATAAAACCGGTAT
122986 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGG-TTCGATGTTTTTGGG
65 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGG
*
123050 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
130 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA
*
123115 CAAAAATATTGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
195 CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
*
123180 GGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACGTTATACTTTTGGGTTCGATGTTTT
260 GGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTT
123245 TGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCT
325 TGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCT
*
123310 GGACCAAAAA
390 GGAACAAAAA
*
123320 TATCGACACAATCTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
123385 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
123450 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
*
123515 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTTATAAAACCG
196 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
123580 GTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTT
261 GTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGG-TTCGATGTTTT
*
123645 TGGGATCGACA-TTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCT
325 TGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCT
123709 GGAACAAAAA
390 GGAACAAAAA
123719 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
123784 CTTGTATCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
* * *
123849 TCGACACTTTTTATATATGGTTTGACACTTTATGGTTGCACCATGTT
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
123896 GGCCATATTG
Statistics
Matches: 560, Mismatches: 12, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
397 14 0.03
398 96 0.17
399 428 0.76
400 22 0.04
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (399 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
GTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTT
GGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCTG
GAACAAAAA
Found at i:124060 original size:19 final size:19
Alignment explanation
Indices: 124014--124062 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
124004 TTATATTCAC
*
124014 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
124033 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
124052 ATACAAAATTA
1 ATACAAAATTA
124063 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:125898 original size:33 final size:33
Alignment explanation
Indices: 125861--125926 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
125851 CATCTTAATA
*
125861 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
125894 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
125927 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:125985 original size:21 final size:21
Alignment explanation
Indices: 125960--126003 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
125950 CCCCTTATGC
125960 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
125981 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
126002 CT
1 CT
126004 TGATTCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:128239 original size:17 final size:18
Alignment explanation
Indices: 128217--128259 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
128207 ATATATCCGG
128217 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
128234 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
128254 TATCAT
1 TATCAT
128260 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:128277 original size:20 final size:19
Alignment explanation
Indices: 128222--128268 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
128212 TCCGGTATCA
128222 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
128241 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
128262 TTTTACC
1 TTTTACC
128269 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:128447 original size:18 final size:19
Alignment explanation
Indices: 128403--128444 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
128393 TCCGGTAACG
128403 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
128422 TTGTTACCGGTTTTCAT-ATT
1 TT-TTACCGGTTTT-ATCATT
128442 TTT
1 TTT
128445 ACCTGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 3 0.14
20 16 0.76
21 2 0.10
ACGTcount: A:0.14, C:0.14, G:0.12, T:0.60
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:128589 original size:179 final size:180
Alignment explanation
Indices: 128189--128658 Score: 703
Period size: 181 Copynumber: 2.6 Consensus size: 180
128179 CGTACTTACG
* *
128189 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
128254 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTT-TGGATCGATACATTTTTTAAAAGTATCGACACATTAT
*
128319 AGGCGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
130 AGGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
*
128370 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGG-TT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
128434 T-TCATATTTTTACCTGGTATATCGTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTATA
66 TATCATATTTTTACCTGTTATATCGTTTGGATCGATACATTTTTTAAAAGTATCGACACATTATA
** * *
128498 GGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 GGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
* * * * *
128549 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCATTTCT-ATACCGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTT-TGATACCGGTT
* * *
128613 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
65 TTATCATATTTTTACCTGTTATATCG-TTTGGATCGATACATTTTT
128659 AATTTGGATC
Statistics
Matches: 263, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
178 79 0.30
179 79 0.30
180 7 0.03
181 80 0.30
182 18 0.07
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.42
Consensus pattern (180 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTGGATCGATACATTTTTTAAAAGTATCGACACATTATA
GGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:129189 original size:228 final size:229
Alignment explanation
Indices: 128725--129219 Score: 895
Period size: 229 Copynumber: 2.2 Consensus size: 229
128715 ACCTACTTTT
* *
128725 ATAAGTATGAACACTTTTATAAAAATAATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
1 ATAAGTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
128790 ATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
66 ATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
128855 AAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
131 AAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
* *
128920 CAAATATAATAATAAATATGTTTTCCACAGTGAA
196 CAAAGATAATAATAAATATATTTTCCACAGTGAA
128954 ATAAGTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
1 ATAAGTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
*
129019 A-TTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
66 ATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
*
129083 AAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAA
131 AAAATTATTTGATT-ATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAA
129148 CCAAAGATAATAATAAATATATTTT-CACAGTGAA
195 CCAAAGATAATAATAAATATATTTTCCACAGTGAA
* *
129182 ATAAGTATGGATACTTTTATAAAAAGGATATATACTTT
1 ATAAGTATGGACACTTTTATAAAAATGATATATACTTT
129220 ACAATATAAC
Statistics
Matches: 257, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
228 121 0.47
229 136 0.53
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (229 bp):
ATAAGTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
ATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
AAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
CAAAGATAATAATAAATATATTTTCCACAGTGAA
Found at i:129482 original size:11 final size:11
Alignment explanation
Indices: 129466--129490 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
129456 ATCCGGTAAT
129466 ACCGTATATTA
1 ACCGTATATTA
129477 ACCGTATATTA
1 ACCGTATATTA
129488 ACC
1 ACC
129491 CGCATTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (11 bp):
ACCGTATATTA
Found at i:130210 original size:2 final size:2
Alignment explanation
Indices: 130203--130256 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
130193 TAACTATTTC
130203 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130245 AT AT AT AT AT AT
1 AT AT AT AT AT AT
130257 TTAAAATTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:146063 original size:297 final size:295
Alignment explanation
Indices: 145526--146122 Score: 845
Period size: 297 Copynumber: 2.0 Consensus size: 295
145516 GAAAATAACA
* * * * * ** * *
145526 AAAACGAAGGTTTGGTACGATCGCATGCATCTGAAAAGAGAAGTTCAAAGTTACCTAAGGTCAAA
1 AAAATGAAGGTTTGGCACAATCACATGCATCTGAAAAGAAAAGCCCAAAGTTACCAAAGGCCAAA
* *
145591 TCTGACACTGCAAAGTCTGGCCAAGAATTTCTTGAAGACAAGAAAAACCATTGATACTTCTGAGG
66 TCTGACACTGCAAAATCTGGCCAAGAATTTCTTGAAGAAAAGAAAAACCATTGATACTTCTGAGG
* *
145656 TTCAGAAGAGAAAGCGAAGGAAGAAGAACAAGAGTATATCAGAAAGCAGCAAAGTATCTGGAAAT
131 TTCAGAAGAGAAAGCGAAGGAAGAAGAACAAGAGTATATCAGAAAGAAGCAAAGTATCTGAAAAT
* * * *
145721 GATGCTGAGAAGCAAAATTCAAGAGAAGACAACCCACGAAAGGATGCTACCACCAGTATGGTGCA
196 GATGCTAAGAAGCAAAATCCAAGAGAAGACAACCCACAAAAGGATGCTACCACCAGAATGGTGCA
** * * *
145786 TTTAGAGAAAAGGCAGCATATCCAGA-AGATAGAAG
261 TGAACAGAAAAGCCAGCAGATCCA-ACAGATAGAAG
*
145821 AAAATGAAGGTTTGGCACAATCACATGCATCTGAAAAGAAAAGCCCAAAGTTATCAAAGGCCAAA
1 AAAATGAAGGTTTGGCACAATCACATGCATCTGAAAAGAAAAGCCCAAAGTTACCAAAGGCCAAA
* * * *
145886 TTTGACATTGCAAAATCAGTTGCCAAGAATTTCTTGAAGAAAAGAAAAGCCATTGATACTTCTGA
66 TCTGACACTGCAAAATC--TGGCCAAGAATTTCTTGAAGAAAAGAAAAACCATTGATACTTCTGA
* * *
145951 GGTTCAGAAGAGGAAGCTAAGGAAGAAGAACAAGAGTATATCAGAGAGAAGCAAAGTATCTGAAA
129 GGTTCAGAAGAGAAAGCGAAGGAAGAAGAACAAGAGTATATCAGAAAGAAGCAAAGTATCTGAAA
* * * *
146016 ATGATGCTAAGGAGCAAAATCCAAGAGAAGACAATCCACAAAAGGATGCTACTACCAGAATGTTG
194 ATGATGCTAAGAAGCAAAATCCAAGAGAAGACAACCCACAAAAGGATGCTACCACCAGAATGGTG
146081 CATGAACAGAAAAGCCAGCAGATCCAACAGATAGAAG
259 CATGAACAGAAAAGCCAGCAGATCCAACAGATAGAAG
*
146118 GAAAT
1 AAAAT
146123 ACATATCGGT
Statistics
Matches: 264, Mismatches: 35, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
295 69 0.26
296 1 0.00
297 194 0.73
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (295 bp):
AAAATGAAGGTTTGGCACAATCACATGCATCTGAAAAGAAAAGCCCAAAGTTACCAAAGGCCAAA
TCTGACACTGCAAAATCTGGCCAAGAATTTCTTGAAGAAAAGAAAAACCATTGATACTTCTGAGG
TTCAGAAGAGAAAGCGAAGGAAGAAGAACAAGAGTATATCAGAAAGAAGCAAAGTATCTGAAAAT
GATGCTAAGAAGCAAAATCCAAGAGAAGACAACCCACAAAAGGATGCTACCACCAGAATGGTGCA
TGAACAGAAAAGCCAGCAGATCCAACAGATAGAAG
Found at i:150438 original size:23 final size:23
Alignment explanation
Indices: 150367--150431 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
150357 AATAACATAT
150367 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATGTAA
* *
150390 TAGGCAGCGCTTATACAATGTAA
1 TAGGTAGCGCTTATATAATGTAA
150413 TAGGTAGCGCTTATATAAT
1 TAGGTAGCGCTTATATAAT
150432 AAAATAGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATGTAA
Found at i:150941 original size:199 final size:198
Alignment explanation
Indices: 150509--151232 Score: 815
Period size: 199 Copynumber: 3.6 Consensus size: 198
150499 TAGATAGCGC
* * * * *
150509 TTATATTGACCTATTTTATAAGT-AAATCGGTATATTTATACC-GGTAACATTGCAAATTTATCT
1 TTATGTTGACTTATTTTCTAA-TAAAATCGGTATATTTATACCGGGT-ACATTGTAAATTTACCT
* * * * * *
150572 ATTACATTATAATTATTGGTTTCGATATTTTTTGGATCGATACAATTT--GAAATATATCGACAC
64 ATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACAC
* * * * * * * *
150635 TTTATGCATGCACCTCG-TTGGACATTTATTCTGGAAAAAAGTATTGAGACAAACTTAAAAAGTG
128 TTTATGCGTGCACC-CGTTTGG-CATTCATTATGGACAAAAGTATCGACACAAATTTAACAAGTG
* *
150699 TTGATACA
191 TCGATACT
* * * *
150707 TTAT-TTAGACTTATTTTATAATAAAACCGGTATATTTCTATCGGGTACATTGTAAATTTACCTA
1 TTATGTT-GACTTATTTTCTAATAAAATCGGTATATTTATACCGGGTACATTGTAAATTTACCTA
* *
150771 TCACATTGTAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTT
65 TTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTT
150836 TATGCGTGCACCCGTTTGGCATTCATTATGGACAAAATGTATCGACACAAATTTAACAAGTGTCG
130 TATGCGTGCACCCGTTTGGCATTCATTATGGACAAAA-GTATCGACACAAATTTAACAAGTGTCG
150901 ATACT
194 ATACT
* * * * *
150906 TTATGCTGACTTATTTTCTCATAAAATCGGTATATTTATACCGGTTACATTGTAAATTTTCATAT
1 TTATGTTGACTTATTTTCTAATAAAATCGGTATATTTATACCGGGTACATTGTAAATTTACCTAT
* *
150971 TACATTATAATTATCGGTTTTGAT-TTTATTGGGATCGATACTTTTAATAAATGTATCAACACTT
66 TACATTATAATTATCGGTTTCGATGTTT-TTGGGATCGATACTTTTAATAAATGTATCGACACTT
* **
151035 TATGCGTGCATCTCGTTTGAGCATTCATTATGGACAATAAGTATCGACACAAATTCCACAAGTGT
130 TATGCGTGCA-CCCGTTTG-GCATTCATTATGGACAA-AAGTATCGACACAAATTTAACAAGTGT
*
151100 CTATA-T
192 CGATACT
* * * * * *
151106 ATTATGTTGACCTGTTTTCAAAT-TAA-CAGGTATATTTATACCGGTTACATTGTTAATTTACCT
1 -TTATGTTGACTTATTTTCTAATAAAATC-GGTATATTTATACCGGGTACATTGTAAATTTACCT
* *
151169 ATTACATTATAATTATTGGTTTCAATGTTTTTTGGG-TCGATACTTTTAGA-AAATGTATCGACA
64 ATTACATTATAATTATCGGTTTCGATG-TTTTTGGGATCGATACTTTTA-ATAAATGTATCGACA
151232 C
127 C
151233 ATATTTAGGT
Statistics
Matches: 455, Mismatches: 54, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
197 6 0.01
198 106 0.23
199 180 0.40
200 91 0.20
201 67 0.15
202 5 0.01
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (198 bp):
TTATGTTGACTTATTTTCTAATAAAATCGGTATATTTATACCGGGTACATTGTAAATTTACCTAT
TACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTT
ATGCGTGCACCCGTTTGGCATTCATTATGGACAAAAGTATCGACACAAATTTAACAAGTGTCGAT
ACT
Found at i:153740 original size:19 final size:19
Alignment explanation
Indices: 153699--153743 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
153689 ATTCACATAA
**
153699 AAAATTATAAATCGTATGT
1 AAAATTATAAATCGTATAC
*
153718 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
153737 AAAATTA
1 AAAATTA
153744 ACCCTACATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:155791 original size:200 final size:197
Alignment explanation
Indices: 155320--156084 Score: 897
Period size: 200 Copynumber: 3.9 Consensus size: 197
155310 CACATTATTT
* * * * * * *
155320 AAAAAGTATCGATACAAATTTAAAAGTGTTGATGCATTATGTTGACATATTCTATCATTAAATCG
1 AAAAAGTATCGACACAAATTTAAAAGTGTCGATACATTATGCTGACATATTCTCTCATAAAACCG
* * * *
155385 GTATATTTATACCGATTACATTGTAAATTTACCTATTACGTTATAATTATCGGTTTTGATGTTTT
66 GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTT
** * * * * * * *
155450 TGGGATCGATACAATTT-CAAATGTATCGACACTTTGTGCCTGCACCCCGTTTGGCATTTATCCT
131 T-GGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATG-AACCCTTTTGGCATTCATTCT
155514 GGAC
194 GGAC
** * * * * * * *
155518 AAAATTTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTTATAAATCC
1 AAAAAGTATCGACACAAATTTAAAA-GTGTCGATACATTATGCTGACATATTCTCTCATAAAACC
*
155583 GGTATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
65 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
* *
155648 TTAGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATGTAACCCTTTTGGCATTCGTTT
130 TT-GGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATG-AACCCTTTTGGCATTCATTC
*
155713 TGGAA
193 TGGAC
* * *
155718 AAAAAGTATCGACACAAATTTAACAATTGTCGATACTTTATGCTGACATATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAA-AAGTGTCGATACATTATGCTGACATATTCTCTCATAAAACC
* * *
155783 GGTATATTTATACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTT
65 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
* * * ** * *
155848 GT-GATCGACACTTTTTAAAAATGTATCGACACTTAATGGGTGCACCCTTTTGGCATTCCTTCTG
130 TTGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATGAACCCTTTTGGCATTCATTCTG
155912 GAC
195 GAC
* * * * * *
155915 AAAAAGTATCGACACAAATTCTAGAAGTGTCGATTCATT-TTCTAGACCTATTCTCACATAAAAT
1 AAAAAGTATCGACACAAATT-TAAAAGTGTCGATACATTATGCT-GACATATTCTCTCATAAAAC
* * * * *
155979 CGGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATCATGAGTTTTGATGTT
64 CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTT
* *
156044 TCTGTGATCGATACTTTTTATAAATGTATCGACACTTTATG
129 TTTG-GATCGATACTTTTTAAAAATGTATCGACACTTTATG
156085 GGAAACTTTA
Statistics
Matches: 484, Mismatches: 76, Indels: 13
0.84 0.13 0.02
Matches are distributed among these distances:
196 3 0.01
197 129 0.27
198 59 0.12
199 137 0.28
200 154 0.32
201 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (197 bp):
AAAAAGTATCGACACAAATTTAAAAGTGTCGATACATTATGCTGACATATTCTCTCATAAAACCG
GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTT
TGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATGAACCCTTTTGGCATTCATTCTGG
AC
Found at i:156055 original size:397 final size:397
Alignment explanation
Indices: 155320--156084 Score: 1018
Period size: 397 Copynumber: 1.9 Consensus size: 397
155310 CACATTATTT
* * * * * *
155320 AAAAAGTATCGATACAAATTTAAAAGTGTTGATGCATTATGTTGACATATTCTATCATTAAATCG
1 AAAAAGTATCGACACAAATTTAAAAGTGTCGATACATTATGCTGACATATTCTATCATAAAACCG
* * **
155385 GTATATTTATACCGATTACATTGTAAATTTACCTATTACGTTATAATTATCGGTTTTGATGTTTT
66 GTATATTTATACCGATTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAATG-TTT
* * ** *
155450 TGGGATCGATACAATTTCAAATGTATCGACACTTTGTGCCTGCACCCCGTTTGGCATTTATCCTG
130 TGGGATCGACACAATTTAAAATGTATCGACACTTAATGCCTGCACCCCGTTTGGCATTCATCCTG
** * * * **
155515 GACAAAATTTATCGACACAAATCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTTATAAA
195 GACAAAAAGTATCGACACAAATCTAAAACGTGTCGATACATTATCTACACCTATTCTCACATAAA
* * * *
155580 TCCGGTATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATG
260 TCCGGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATCATCAGTTTCGATG
*
155645 TTTTTAGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATGTAACCCTTTTGGCATTCG
325 TTTCTAGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATGTAACCCTTTTGGCATTCG
155710 TTTTGGAA
390 TTTTGGAA
* * * *
155718 AAAAAGTATCGACACAAATTTAACAATTGTCGATACTTTATGCTGACATATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAA-AAGTGTCGATACATTATGCTGACATATTCTATCATAAAACC
*
155783 GGTATATTTATACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAATG-TT
65 GGTATATTTATACCGATTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTT
* ** ** * * *
155847 TGTGATCGACACTTTTTAAAAATGTATCGACACTTAATGGGTGCA-CCCTTTTGGCATTCCTTCT
130 TGGGATCGACACAATTT-AAAATGTATCGACACTTAATGCCTGCACCCCGTTTGGCATTCATCCT
* * * *
155911 GGACAAAAAGTATCGACACAAATTCTAGAA-GTGTCGATTCATTTTCTAGACCTATTCTCACATA
194 GGACAAAAAGTATCGACACAAA-TCTAAAACGTGTCGATACATTATCTACACCTATTCTCACAT-
* *
155975 AAAT-CGGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATCATGAGTTTTG
257 AAATCCGGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATCATCAGTTTCG
*
156039 ATGTTTCT-GTGATCGATACTTTTTATAAATGTATCGACACTTTATG
322 ATGTTTCTAG-GATCGATACTTTTTAAAAATGTATCGACACTTTATG
156085 GGAAACTTTA
Statistics
Matches: 315, Mismatches: 47, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
396 1 0.00
397 171 0.54
398 54 0.17
399 89 0.28
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (397 bp):
AAAAAGTATCGACACAAATTTAAAAGTGTCGATACATTATGCTGACATATTCTATCATAAAACCG
GTATATTTATACCGATTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTTT
GGGATCGACACAATTTAAAATGTATCGACACTTAATGCCTGCACCCCGTTTGGCATTCATCCTGG
ACAAAAAGTATCGACACAAATCTAAAACGTGTCGATACATTATCTACACCTATTCTCACATAAAT
CCGGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATCATCAGTTTCGATGT
TTCTAGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCATGTAACCCTTTTGGCATTCGT
TTTGGAA
Found at i:161278 original size:200 final size:200
Alignment explanation
Indices: 160305--161455 Score: 1282
Period size: 200 Copynumber: 5.8 Consensus size: 200
160295 TGTTAAAATG
* * * * * * *
160305 GTATCGACCCAAATT-TAACAATTGTCGATACTTTATG-ATGACCTATTTTCTCATAAAACAGGT
1 GTATCGACACAAATTCCAA-AAGTGTCGATACATTATGTA-GACCTATTCTCACATAAAACCGGT
* ** * * * * *
160368 ATATTTATACCGGTTACATTGGAAATTTACGTATTACATTATAATTATTGGTTTCAATATTT-TC
64 ATATTTATAACGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCT-
* * *
160432 GGGATCGACACTTTTTA-AAATTGTATCGACACTTAATG-G-G------TTT-GGCATTCCTTCT
128 GGGATCGATACTTTTTATAAA-TGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCT
160487 GGACAAAAA
192 GGACAAAAA
* * * * *
160496 GTATCGACACAAATTCCAGAAGTGTCGATATATTTTCTAGACCTATTCTCGCATAAAACCGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTAT
* * * * * *
160561 ATTTATACCGGTTACATTGA-AAAATTACCTATTACATAATAATAATGGTTTTTGATGTTTCTGA
66 ATTTATAACGGTTACATT-ACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGG
*
160625 GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCATCATTTTTTTGGGCATTCATTCT
130 GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCA---TTTTGGGCATTCATTCT
*
160690 GGACAAAAT
192 GGACAAAAA
* * * *
160699 GTATCGACACATAATT-AAAAACTGTCGATACATTATGTAGACCTATTCTCACATAAAGCTGGTA
1 GTATCGACACA-AATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTA
** * *
160763 TATTTAT-ACTGGTTGTATTACAAAATTACCTATTCCATTATAACTATGGG-TTCGATGTTTCTG
65 TATTTATAAC-GGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTG
* * * * *
160826 GGATCGACACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTATAG
129 GGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGG
160891 ACAAAAA
194 ACAAAAA
* * * * * *
160898 GTATCGACACCAATTTCAAAAGTGTTGATAAATTATGTAGACTTATTCTCACATAAAACCAGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTAT
* * * *
160963 ATTTATATCGGTTACATTA-TAAATTACCTATTATATTATAATTATGGGTTTCGATGTCTT-TGA
66 ATTTATAACGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGT-TTCTGG
* * * * * * *
161026 GATCGAAACTTTTAAAAAATATATCGACACTTTATGGGTGCACCCTTTTGGGCATTCCTTCTGGA
130 GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGA
161091 CAAACAA
195 CAAA-AA
** * * * **
161098 -TATCGACACAAATTCCTGAAGTGTCGATACATTATGTAAACTTATTCTCTCATAAAATTGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTAT
* ** ** * * *
161162 AATTATTTCGGTTACATTGTAAATTTACCTATTATATTATAATTATGGGTTTCGATGTTTCTAGG
66 ATTTATAACGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
*
161227 ATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCTGGAC
131 ATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGAC
161292 AAAAA
196 AAAAA
* * * *
161297 GTATCGATACCAATTTCAAAAGTGTCGATACATTATGTAGACCTATTATCACATAAAACCGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTAT
* * *
161362 ATTTAT-ACTGGTTATATTACAAAATTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGG
66 ATTTATAAC-GGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGG
161426 GATCGATACTTTTTATAAATGTATCGACAC
130 GATCGATACTTTTTATAAATGTATCGACAC
161456 ATCTACTTAC
Statistics
Matches: 806, Mismatches: 125, Indels: 49
0.82 0.13 0.05
Matches are distributed among these distances:
191 130 0.16
192 7 0.01
193 1 0.00
198 29 0.04
199 232 0.29
200 238 0.30
202 58 0.07
203 107 0.13
204 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (200 bp):
GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTAT
ATTTATAACGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
ATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGAC
AAAAA
Found at i:161847 original size:19 final size:19
Alignment explanation
Indices: 161823--161867 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
161813 ATTCACATAA
161823 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
161842 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
161861 AAAATTA
1 AAAATTA
161868 ACCCTACATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:163438 original size:18 final size:18
Alignment explanation
Indices: 163415--163453 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
163405 TCCTCTTCAT
*
163415 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTATTC
163433 TTCCTCCATCTTTTATTC
1 TTCCTCCATCTTTTATTC
163451 TTC
1 TTC
163454 ATATTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCATCTTTTATTC
Found at i:163678 original size:33 final size:33
Alignment explanation
Indices: 163636--163735 Score: 182
Period size: 33 Copynumber: 3.0 Consensus size: 33
163626 CCATCTTAAG
*
163636 TTCAACCCTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
*
163669 TTCACCCCTCAACACCTCAACTTCTTTCATCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
163702 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
163735 T
1 T
163736 CCGTCTATTT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.25, C:0.46, G:0.00, T:0.29
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTTCTTTCACCAC
Found at i:163792 original size:21 final size:21
Alignment explanation
Indices: 163767--163811 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
163757 CTCCCTTATG
*
163767 TCTCTCAAGTGTATCTTCGAC
1 TCTCTCAAGTCTATCTTCGAC
* *
163788 TCTCTCAATTCTCTCTTCGAC
1 TCTCTCAAGTCTATCTTCGAC
163809 TCT
1 TCT
163812 TGATTGTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.33, G:0.09, T:0.42
Consensus pattern (21 bp):
TCTCTCAAGTCTATCTTCGAC
Found at i:164077 original size:6 final size:6
Alignment explanation
Indices: 164066--164090 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
164056 TCGGTCTATC
164066 CAACTT CAACTT CAACTT CAACTT C
1 CAACTT CAACTT CAACTT CAACTT C
164091 GCCATCACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (6 bp):
CAACTT
Found at i:166464 original size:20 final size:20
Alignment explanation
Indices: 166439--166490 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
166429 GTCGCTCTAT
166439 ACCGGTTTTGTCCTTTAGAG
1 ACCGGTTTTGTCCTTTAGAG
166459 ACCGGTTTTGTCCTTTAGAG
1 ACCGGTTTTGTCCTTTAGAG
*
166479 ACCAGTTTTGTC
1 ACCGGTTTTGTC
166491 ATATTTTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.40
Consensus pattern (20 bp):
ACCGGTTTTGTCCTTTAGAG
Found at i:166627 original size:202 final size:201
Alignment explanation
Indices: 166259--166856 Score: 805
Period size: 182 Copynumber: 3.1 Consensus size: 201
166249 GTAGCGCTTT
* *
166259 ACCGGTTTTTTCATTTCA-AGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTATGGATCGA
1 ACCGGTTTTGTCATTT-AGAGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTGTGGATCGA
* *
166323 TACATTTTTATAAAGTATCGACAC-TT-TAGGCGCTAAAACTGCTTCTCTTTTAAATTTACAAAG
65 TACATTGTTATAAAGTATCGACACTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAG
*
166386 TGTTGATACTTATATTAAAGTATCGACACTTTCAATATATTCGGTCGCTCTATACCGGTTTTGTC
130 TGTCGATACTTATATTAAAGTATCGACACTTTCAATATATTCGGTCGCTCTATACCGGTTTTGTC
166451 CTTTAGAG
195 CTTT-GAG
* * * *
166459 ACCGGTTTTGTCCTTTAGAGACCAGTTTTGTCATATTTTTACCTGTTATATCATTGTGGATCGAT
1 ACCGGTTTTGTCATTTAGAGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTGTGGATCGAT
* *
166524 ACATTGTTATAAAGTATCGACACTTTATAGGCGCTAAAATTGTTTCTCTTTTAAATTCACAAAGT
66 ACATTGTTATAAAGTATCGACACTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGT
*
166589 GTCGATACTTATATTAAAGTATCGACACTTTCAATATATACGGTCGCTCTATA----------CC
131 GTCGATACTTATATTAAAGTATCGACACTTTCAATATATTCGGTCGCTCTATACCGGTTTTGTCC
166644 ------
196 TTTGAG
*
166644 A---GTTTTGTCTTTTAGAGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTGTGGATCGAT
1 ACCGGTTTTGTCATTTAGAGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTGTGGATCGAT
* *
166706 ACATTGTTATAAAGTATCGACACTTTATAGACGCTAAAACTGCTTCTTTTTTAAATTCACAAAGT
66 ACATTGTTATAAAGTATCGACACTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGT
*
166771 GTCGATTCTTATATTAAAGTATCGACACTTTCAATATA-TCTGGTACCGCT-T-TACCGGTTTTG
131 GTCGATACTTATATTAAAGTATCGACACTTTCAATATATTC-GGT--CGCTCTATACCGGTTTTG
*
166833 TCTTTTCGAG
193 TCCTTT-GAG
*
166843 ACCAGTTTTGTCAT
1 ACCGGTTTTGTCAT
166857 ATTTTACCTG
Statistics
Matches: 348, Mismatches: 24, Indels: 50
0.82 0.06 0.12
Matches are distributed among these distances:
181 1 0.00
182 160 0.46
183 1 0.00
184 4 0.01
185 1 0.00
192 3 0.01
199 2 0.01
200 79 0.23
201 2 0.01
202 95 0.27
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (201 bp):
ACCGGTTTTGTCATTTAGAGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTGTGGATCGAT
ACATTGTTATAAAGTATCGACACTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGT
GTCGATACTTATATTAAAGTATCGACACTTTCAATATATTCGGTCGCTCTATACCGGTTTTGTCC
TTTGAG
Found at i:166770 original size:182 final size:181
Alignment explanation
Indices: 166463--166908 Score: 702
Period size: 182 Copynumber: 2.5 Consensus size: 181
166453 TTAGAGACCG
* *
166463 GTTTTGTCCTTTAGAGACCAGTTTTGTCATATTTTTACCTGTTATATCATTGTGGATCGATACAT
1 GTTTTGTCTTTTAGAGACCAGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACAT
* * *
166528 TGTTATAAAGTATCGACACTTTATAGGCGCTAAAATTGTTTCTCTTTTAAATTCACAAAGTGTCG
66 TGTTATAAAGTATCGACACTTTATAGACGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCG
166593 ATACTTATATTAAAGTATCGACACTTTCAATATATAC-GGT-CGCTCTATACCA
131 ATACTTATATTAAAGTATCGACACTTTCAATATAT-CTGGTACGCT-T-TACCA
* *
166645 GTTTTGTCTTTTAGAGACCGGTTTTGTCATATTTTTACTTGTTATATCGTTGTGGATCGATACAT
1 GTTTTGTCTTTTAGAGACCAGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACAT
*
166710 TGTTATAAAGTATCGACACTTTATAGACGCTAAAACTGCTTCTTTTTTAAATTCACAAAGTGTCG
66 TGTTATAAAGTATCGACACTTTATAGACGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCG
* *
166775 ATTCTTATATTAAAGTATCGACACTTTCAATATATCTGGTACCGCTTTACCG
131 ATACTTATATTAAAGTATCGACACTTTCAATATATCTGGTA-CGCTTTACCA
* * *
166827 GTTTTGTCTTTTCGAGACCAGTTTTGTCATA-TTTTACCTGTTATATTGATGTGGATCGATACAG
1 GTTTTGTCTTTTAGAGACCAGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACA-
166891 TT-TTATAAAGTATCGACA
65 TTGTTATAAAGTATCGACA
166909 TAAACCGACA
Statistics
Matches: 245, Mismatches: 15, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
181 46 0.19
182 194 0.79
183 1 0.00
184 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (181 bp):
GTTTTGTCTTTTAGAGACCAGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACAT
TGTTATAAAGTATCGACACTTTATAGACGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCG
ATACTTATATTAAAGTATCGACACTTTCAATATATCTGGTACGCTTTACCA
Found at i:170162 original size:15 final size:15
Alignment explanation
Indices: 170142--170174 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
170132 ACTAATGAGC
170142 TTAAAA-AATATATTT
1 TTAAAACAATAT-TTT
170157 TTAAAACAATATTTT
1 TTAAAACAATATTTT
170172 TTA
1 TTA
170175 GTTTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAAAACAATATTTT
Found at i:176468 original size:31 final size:31
Alignment explanation
Indices: 176408--176468 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
176398 CGTCAAATAG
* * *
176408 GTGTCTAATGTTTTCTCTGTTATATTTTTAC
1 GTGTCTAATGTTTTCTCTATTACACTTTTAC
*
176439 GTGTCTAGTGTTTTCTCTATTACACTTTTA
1 GTGTCTAATGTTTTCTCTATTACACTTTTA
176469 GGTGCTTACA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.16, C:0.15, G:0.13, T:0.56
Consensus pattern (31 bp):
GTGTCTAATGTTTTCTCTATTACACTTTTAC
Found at i:177123 original size:24 final size:24
Alignment explanation
Indices: 177095--177143 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
177085 TATAGTTTTG
177095 TTATTATAATATTGAAATGTAATT
1 TTATTATAATATTGAAATGTAATT
177119 TTATTATAATATTGAAATGTAATT
1 TTATTATAATATTGAAATGTAATT
177143 T
1 T
177144 GGACATTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (24 bp):
TTATTATAATATTGAAATGTAATT
Done.