genome.fa.s1892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001892.1 Hibiscus syriacus cultivar Beakdansim tig00003838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101142

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106--717	249	2.4	249	81	8	688	36	13	12	37	1.83
3694--3733	2	20.5	2	94	5	73	50	0	0	50	1.00
8247--8271	12	2.1	12	100	0	50	24	16	0	60	1.36
9551--9729	95	1.9	94	84	10	240	37	14	22	24	1.92
10148--10228	20	3.7	20	72	20	72	41	9	25	22	1.84
10134--10559	47	9.0	47	90	2	615	45	13	20	20	1.85
10480--10579	20	4.7	20	78	17	112	42	12	27	19	1.86
10546--10680	47	2.9	47	77	0	153	44	14	20	21	1.86
16007--16059	21	2.5	21	96	0	97	43	13	9	33	1.76
20472--20515	21	2.1	21	91	0	70	34	15	18	31	1.92
20519--20741	95	2.3	95	86	1	295	31	16	26	26	1.96
21072--21469	59	6.8	59	90	1	593	35	12	19	32	1.89
25995--26442	228	2.0	226	95	0	797	44	8	7	39	1.62
26509--26554	20	2.3	19	89	10	74	54	10	17	17	1.70
26676--26722	20	2.4	19	82	10	67	53	10	17	19	1.72
26685--26727	20	2.3	19	88	11	63	51	11	16	20	1.75
28957--29021	21	3.1	21	79	0	67	40	15	29	15	1.88
29055--29120	33	2.0	33	90	0	105	28	0	48	22	1.51
30911--30959	19	2.6	19	93	0	80	30	2	10	57	1.43
31078--32133	199	5.3	199	97	0	1947	37	15	16	30	1.90
32816--32913	6	16.3	6	78	0	61	36	8	34	20	1.82
32837--32916	9	8.6	9	81	8	70	35	7	35	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32867--32917	3	17.0	3	87	0	75	37	1	33	27	1.68
32819--32913	12	7.9	12	83	0	91	35	8	34	21	1.83
34418--35089	183	3.7	183	95	1	1183	33	15	17	33	1.91
34418--35089	365	1.8	363	93	1	1177	33	15	17	33	1.91
37558--37622	25	2.6	25	80	0	85	35	9	13	41	1.77
37965--38113	23	6.5	23	88	0	217	34	5	19	40	1.74
37965--38113	46	3.2	46	96	0	271	34	5	19	40	1.74
38532--38568	18	2.1	18	89	0	56	32	5	10	51	1.60
38524--38570	24	2.0	24	86	0	67	34	4	14	46	1.64
38824--38910	39	2.2	39	91	0	147	48	19	13	18	1.81
39329--39401	23	3.2	23	84	0	92	34	4	20	41	1.72
41806--42029	95	2.4	95	78	3	236	30	15	26	27	1.96
42351--42683	117	2.8	117	88	0	522	36	12	21	29	1.91
42359--42695	176	1.9	177	89	1	525	36	11	21	29	1.89
42359--42683	59	5.5	59	89	0	508	36	12	21	29	1.90
44134--44582	54	8.3	54	88	2	607	25	15	21	37	1.93
50460--50600	54	2.6	54	86	2	176	25	16	21	36	1.94
52758--52787	15	1.9	16	93	6	53	26	50	6	16	1.70
62827--63531	54	13.1	54	86	1	930	27	16	19	36	1.93
62949--63088	27	5.2	27	62	13	72	25	17	19	37	1.94
63880--63913	18	1.9	18	88	5	52	20	20	11	47	1.81
65683--65728	19	2.3	20	82	14	60	50	8	4	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86558--86590	16	2.1	16	94	0	57	54	0	0	45	0.99
86610--86652	22	1.9	23	85	4	61	55	4	4	34	1.41
87329--87360	16	2.0	17	88	11	50	34	0	0	65	0.93
87373--87422	24	2.1	24	88	3	75	42	0	4	54	1.19
88048--88132	43	2.0	43	88	0	125	24	10	11	52	1.69
88145--88183	3	12.3	3	89	10	60	30	0	0	69	0.89
88145--88183	13	3.1	13	96	3	71	30	0	0	69	0.89
88182--88213	3	11.3	3	87	12	50	0	0	34	65	0.93
88182--88214	8	4.0	8	96	4	57	0	0	36	63	0.95
89261--89302	22	1.9	22	85	0	57	61	2	11	23	1.42

Tables:   1

The End!