Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001893.1 Hibiscus syriacus cultivar Beakdansim tig00003839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52762

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
991--1021
14
2.3
14
94
5
55
35
0
22
41
1.54
1128--1229
19
5.6
19
84
13
151
44
17
23
14
1.86
1258--1531
19
15.4
19
81
15
354
14
20
17
47
1.83
1236--1503
52
5.0
52
92
4
437
14
21
16
46
1.83
1258--1498
109
2.3
102
85
9
176
14
21
17
46
1.83
3810--3834
12
2.1
12
100
0
50
0
28
0
72
0.86
4009--4055
24
2.0
24
87
8
69
38
21
14
25
1.92
4738--5106
20
18.5
20
85
5
442
20
18
25
34
1.96
13902--14028
56
2.2
57
82
13
156
32
14
18
34
1.91
34924--34954
2
15.5
2
100
0
62
48
0
51
0
1.00
35264--35296
2
16.5
2
100
0
66
48
0
0
51
1.00
36077--36133
28
2.1
27
86
3
78
45
10
3
40
1.56
36374--36436
28
2.2
28
91
0
99
42
25
1
30
1.64
37127--37160
17
1.9
17
88
5
50
35
8
26
29
1.87
37725--37819
37
2.6
37
94
0
172
37
40
10
11
1.76
40881--40936
29
2.0
29
92
3
96
39
21
3
35
1.71
46062--46122
16
3.8
16
91
0
95
59
22
9
8
1.56
46855--46922
24
2.8
25
76
10
70
51
19
13
16
1.76
47818--47852
15
2.4
15
90
4
54
51
2
0
45
1.16
51194--51359
74
2.2
75
81
5
194
29
9
13
47
1.74

Tables:   1

The End!