genome.fa.s1894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001894.1 Hibiscus syriacus cultivar Beakdansim tig00003840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76155

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920--1050	40	3.3	39	87	6	174	38	23	16	20	1.92
921--987	20	3.3	20	68	15	57	38	23	16	20	1.92
945--1061	20	5.8	20	74	15	107	41	22	16	19	1.90
876--1061	40	4.6	39	76	15	148	38	24	15	22	1.92
1089--1128	20	2.0	20	95	0	71	45	15	22	17	1.85
1478--1528	20	2.5	21	90	3	77	15	15	19	49	1.80
1499--1609	40	2.8	40	83	1	132	23	18	11	46	1.81
1519--1598	20	4.0	20	88	1	106	26	17	8	47	1.76
1498--1599	20	5.1	20	78	8	84	23	17	12	46	1.83
1522--1609	41	2.2	40	83	2	113	26	18	9	46	1.78
1619--1664	19	2.3	20	81	7	58	23	17	30	28	1.97
2290--2433	63	2.4	60	87	9	197	31	13	15	38	1.87
2728--2763	2	18.0	2	100	0	72	50	0	0	50	1.00
7736--7766	3	10.3	3	100	0	62	35	0	0	64	0.94
9041--9158	53	2.2	53	93	1	202	39	21	11	27	1.87
15777--15825	22	2.3	22	89	3	73	14	22	40	22	1.90
18585--18645	20	3.1	20	85	2	79	16	27	37	18	1.92
30008--30041	3	11.3	3	93	0	59	67	2	0	29	1.05
34371--34407	19	1.9	19	94	0	65	32	13	27	27	1.94
36043--36128	23	3.7	23	82	0	109	18	29	23	29	1.98
37254--37357	51	2.0	51	92	0	172	32	23	12	31	1.92
40361--40387	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40515--40549	17	2.1	17	88	0	52	37	20	11	31	1.88
41560--41614	22	2.5	22	96	0	101	41	14	10	32	1.81
41996--42105	29	3.8	29	91	2	177	18	20	15	46	1.84
42470--42626	64	2.5	64	75	10	151	26	18	19	35	1.95
50360--50395	18	2.1	17	89	5	54	61	0	0	38	0.96
50782--50832	3	17.0	3	100	0	102	33	0	0	66	0.92
52344--52411	31	2.2	31	100	0	136	20	32	16	30	1.94
57640--57736	40	2.4	41	83	11	137	39	13	12	35	1.82
57698--57741	23	1.9	23	90	9	72	29	18	18	34	1.94
57721--57776	27	2.1	27	82	0	67	41	14	14	30	1.85
58059--58127	10	6.5	10	76	15	59	20	26	28	24	1.99
58067--58137	22	3.3	22	69	11	58	22	28	26	22	1.99
60519--60649	24	5.5	24	83	5	131	21	12	16	48	1.80
60565--60649	12	7.1	12	69	5	64	18	12	17	50	1.77
65243--65302	12	5.0	12	74	8	59	18	15	18	48	1.81
65243--65314	24	3.0	24	85	0	99	19	12	18	50	1.78
65210--65314	48	2.2	49	83	6	126	20	14	16	48	1.80
72287--72402	42	2.8	41	89	2	178	19	15	18	46	1.84
72591--72651	22	2.8	23	82	7	65	47	0	0	52	1.00
72607--72763	28	5.7	27	66	25	80	48	0	1	49	1.13

Tables:   1

The End!