Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001895.1 Hibiscus syriacus cultivar Beakdansim tig00003841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129488
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:3365 original size:48 final size:48
Alignment explanation
Indices: 3298--3446 Score: 201
Period size: 48 Copynumber: 3.1 Consensus size: 48
3288 ACATACTTTG
*
3298 TGTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTGCATTTT
1 TGTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTTCATTTT
* * *
3346 TGTACGATGATTATCGATCGAATTTGTTTAATGCATAA-TCTTCATTTT
1 TGTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGT-TTCATTTT
* * * *
3394 CGTATGATGGTTATTGATTGATTTTGTTTAATGCATATGTTTCATTTT
1 TGTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTTCATTTT
*
3442 CGTAT
1 TGTAT
3447 CATTACTATG
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.01
48 86 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.09, G:0.18, T:0.49
Consensus pattern (48 bp):
TGTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTTCATTTT
Found at i:5482 original size:3 final size:3
Alignment explanation
Indices: 5474--5505 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
5464 AATTTTTACC
5474 TAA TAA TAA TAA TAA TAA TAA TAA TAA CTAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA T
5506 CGATCGCCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14927 original size:24 final size:24
Alignment explanation
Indices: 14826--14934 Score: 87
Period size: 24 Copynumber: 4.5 Consensus size: 24
14816 GAATATTTTA
* * *
14826 TCTGATTTATGATTTGAATTCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
14850 TTTGACATCTGATCTGAAATCTGT
1 TCTGATATCTGATCTGAATTCTGT
* *
14874 TCTGAT-TCCT-AACATGGATTCTGT
1 TCTGATAT-CTGATC-TGAATTCTGT
*
14898 TCTGATATCTGATCTGAATTATGT
1 TCTGATATCTGATCTGAATTCTGT
* *
14922 TTTGATTTCTGAT
1 TCTGATATCTGAT
14935 ATCTCCGTTT
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
23 3 0.05
24 59 0.91
25 3 0.05
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.48
Consensus pattern (24 bp):
TCTGATATCTGATCTGAATTCTGT
Found at i:24196 original size:12 final size:12
Alignment explanation
Indices: 24181--24216 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
24171 TTGTTTTGAC
24181 ATCTGATCTGAA
1 ATCTGATCTGAA
* *
24193 ATCTGTTCTGAT
1 ATCTGATCTGAA
24205 ATCTGATCTGAA
1 ATCTGATCTGAA
24217 TTATGTTTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (12 bp):
ATCTGATCTGAA
Found at i:24228 original size:24 final size:24
Alignment explanation
Indices: 24160--24228 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 24
24150 ATCTAATTTA
* * *
24160 TGATTTGAATTTTGTTTTGACATC
1 TGATCTGAATTATGTTTTGATATC
* * *
24184 TGATCTGAAATCTGTTCTGATATC
1 TGATCTGAATTATGTTTTGATATC
24208 TGATCTGAATTATGTTTTGAT
1 TGATCTGAATTATGTTTTGAT
24229 TTCCGATATC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.49
Consensus pattern (24 bp):
TGATCTGAATTATGTTTTGATATC
Found at i:31960 original size:2 final size:2
Alignment explanation
Indices: 31948--31977 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
31938 TGAATAAATA
*
31948 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31978 GATTAAGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:32016 original size:16 final size:16
Alignment explanation
Indices: 31995--32036 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
31985 TAATAATAAA
31995 AAAATGATAAATAACT
1 AAAATGATAAATAACT
32011 AAAATGATAAATAACT
1 AAAATGATAAATAACT
32027 AAAAT-ATAAA
1 AAAATGATAAA
32037 AGAAATTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (16 bp):
AAAATGATAAATAACT
Found at i:33395 original size:3 final size:3
Alignment explanation
Indices: 33387--33425 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
33377 ATTAATTATT
*
33387 TAA TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
33426 TAAGCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 3 0.09
3 29 0.91
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:33421 original size:25 final size:25
Alignment explanation
Indices: 33387--33436 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
33377 ATTAATTATT
33387 TAATAATAATAATATAA-CATAATAA
1 TAATAATAATAATATAAGCA-AATAA
33412 TAATAATAATAATATAAGCAAATAA
1 TAATAATAATAATATAAGCAAATAA
33437 GAAAAAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (25 bp):
TAATAATAATAATATAAGCAAATAA
Found at i:34012 original size:120 final size:122
Alignment explanation
Indices: 33801--34080 Score: 449
Period size: 120 Copynumber: 2.3 Consensus size: 122
33791 GTTGAACAAG
* * *
33801 TTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTGGAAATGTTGATGCTGATCTAT
1 TTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAAC-TCTTCTGAAAATGTTGATGATGATCTAT
* *
33866 CTCCTTCTGTGATAGAATCATACAAAAAGTTGAATAAGTTCTTCTCATTATGAACTTC
65 CTCCTTCTGTGATAGAATCATACAAAAAGTTGAACAAATTCTTCTCATTATGAACTTC
33924 TTCTTCCTCTTCA-ATAAGTTCTTCTCATTATGAAC-CTTCTGAAAATGTTGATGATGATCTATC
1 TTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTTCTGAAAATGTTGATGATGATCTATC
* *
33987 TCCTTCTGTGATAGAATCGA-GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
66 TCCTTCTGTGATAGAATC-ATACAAAAAGTTGAACAAATTCTTCTCATTATGAACTTC
*
34044 TTCTTCCTTTTCAGATAAGTTCTTCTCATTATGAACT
1 TTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACT
34081 TTATGGAAAA
Statistics
Matches: 146, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
120 89 0.61
121 23 0.16
122 21 0.14
123 13 0.09
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (122 bp):
TTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTTCTGAAAATGTTGATGATGATCTATC
TCCTTCTGTGATAGAATCATACAAAAAGTTGAACAAATTCTTCTCATTATGAACTTC
Found at i:34350 original size:113 final size:113
Alignment explanation
Indices: 34223--34500 Score: 398
Period size: 113 Copynumber: 2.5 Consensus size: 113
34213 CAAACTCTTC
*
34223 TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGTAATGTTGATCCATCAAATGATGAATT
1 TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAATGATGAATT
* *
34288 CAAACAAAAAGTTGAATAAATTCTTCTCATTATGAA-TTCCTTCTTCCT
66 CAAACAAAAAGTTGAACAAACTCTTCTCATTATGAACTT-CTTCTTCCT
* * * *
34336 TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTATGGAAAAGTTGATCCATCAAGTGATGGATT
1 TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAATGATGAATT
** * * *
34401 TGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCT
66 CAAACAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCT
* *
34449 TTTTCAAATGAGTTCTTCTCATTATGAACTCTT-TCTGGAAATGTTGATCCAT
1 TCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCTGGAAATGTTGATCCAT
34501 TGTGATGGAT
Statistics
Matches: 147, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
113 143 0.97
114 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (113 bp):
TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAATGATGAATT
CAAACAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCT
Found at i:35675 original size:20 final size:20
Alignment explanation
Indices: 35641--35728 Score: 97
Period size: 20 Copynumber: 4.2 Consensus size: 20
35631 ATGTTAATCC
*
35641 ATTTACAAAAGAATAAATTGA
1 ATTT-CAAAAAAATAAATTGA
*
35662 ATTTCAAAAAAATAAATTAA
1 ATTTCAAAAAAATAAATTGA
35682 ATTTCAAAAATAATAAATTGA
1 ATTTCAAAAA-AATAAATTGA
*
35703 ATTT-AGAGAAAATAAACTTAGA
1 ATTTCA-AAAAAATAAA-TT-GA
35725 ATTT
1 ATTT
35729 ATTAATAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
20 31 0.53
21 22 0.37
22 6 0.10
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
ATTTCAAAAAAATAAATTGA
Found at i:35701 original size:41 final size:43
Alignment explanation
Indices: 35647--35728 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 43
35637 ATCCATTTAC
35647 AAAAGAATAAATTGAATTTCA-AAAAAATAAA-TTA-AATTTCA
1 AAAAGAATAAATTGAATTT-AGAAAAAATAAACTTAGAATTTCA
* *
35688 AAAATAATAAATTGAATTTAGAGAAAATAAACTTAGAATTT
1 AAAAGAATAAATTGAATTTAGAAAAAATAAACTTAGAATTT
35729 ATTAATAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 1 0.03
41 27 0.75
42 3 0.08
43 5 0.14
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (43 bp):
AAAAGAATAAATTGAATTTAGAAAAAATAAACTTAGAATTTCA
Found at i:47180 original size:278 final size:278
Alignment explanation
Indices: 46683--47240 Score: 1116
Period size: 278 Copynumber: 2.0 Consensus size: 278
46673 TGCTTTATGC
46683 TCTATCTCTGCAGGAAGATGAAAGCTTTTTCCATACACAAGGCGATAAAGAGATATACCCAAAAG
1 TCTATCTCTGCAGGAAGATGAAAGCTTTTTCCATACACAAGGCGATAAAGAGATATACCCAAAAG
46748 GATTTTATATGTCGTCATATATGCCCATAATGCATTATCAAGGCACAAGGAACAATCTTTTCTAG
66 GATTTTATATGTCGTCATATATGCCCATAATGCATTATCAAGGCACAAGGAACAATCTTTTCTAG
46813 AACGGTTTACCACATTCTCTAATATTTATTTTATTACACAATTTGAAACCTCAGCTTGAAACATT
131 AACGGTTTACCACATTCTCTAATATTTATTTTATTACACAATTTGAAACCTCAGCTTGAAACATT
46878 TATTTGAGGATGATATGTTGTGGCAATACAGGTTTAACGCAATAAGTTGTAAAGCATTAGCAACC
196 TATTTGAGGATGATATGTTGTGGCAATACAGGTTTAACGCAATAAGTTGTAAAGCATTAGCAACC
46943 TGCTTGCATGTAAATTGG
261 TGCTTGCATGTAAATTGG
46961 TCTATCTCTGCAGGAAGATGAAAGCTTTTTCCATACACAAGGCGATAAAGAGATATACCCAAAAG
1 TCTATCTCTGCAGGAAGATGAAAGCTTTTTCCATACACAAGGCGATAAAGAGATATACCCAAAAG
47026 GATTTTATATGTCGTCATATATGCCCATAATGCATTATCAAGGCACAAGGAACAATCTTTTCTAG
66 GATTTTATATGTCGTCATATATGCCCATAATGCATTATCAAGGCACAAGGAACAATCTTTTCTAG
47091 AACGGTTTACCACATTCTCTAATATTTATTTTATTACACAATTTGAAACCTCAGCTTGAAACATT
131 AACGGTTTACCACATTCTCTAATATTTATTTTATTACACAATTTGAAACCTCAGCTTGAAACATT
47156 TATTTGAGGATGATATGTTGTGGCAATACAGGTTTAACGCAATAAGTTGTAAAGCATTAGCAACC
196 TATTTGAGGATGATATGTTGTGGCAATACAGGTTTAACGCAATAAGTTGTAAAGCATTAGCAACC
47221 TGCTTGCATGTAAATTGG
261 TGCTTGCATGTAAATTGG
47239 TC
1 TC
47241 AAAACATCAA
Statistics
Matches: 280, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
278 280 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (278 bp):
TCTATCTCTGCAGGAAGATGAAAGCTTTTTCCATACACAAGGCGATAAAGAGATATACCCAAAAG
GATTTTATATGTCGTCATATATGCCCATAATGCATTATCAAGGCACAAGGAACAATCTTTTCTAG
AACGGTTTACCACATTCTCTAATATTTATTTTATTACACAATTTGAAACCTCAGCTTGAAACATT
TATTTGAGGATGATATGTTGTGGCAATACAGGTTTAACGCAATAAGTTGTAAAGCATTAGCAACC
TGCTTGCATGTAAATTGG
Found at i:47388 original size:31 final size:32
Alignment explanation
Indices: 47350--47413 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
47340 AATCACTGGC
47350 TCCTCGAACAGTGAT-GGCAATAATAACCACA
1 TCCTCGAACAGTGATGGGCAATAATAACCACA
47381 TCCTCGAACAGTGATGGGCAATAATAACCACA
1 TCCTCGAACAGTGATGGGCAATAATAACCACA
47413 T
1 T
47414 TGAAGAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (32 bp):
TCCTCGAACAGTGATGGGCAATAATAACCACA
Found at i:51788 original size:19 final size:19
Alignment explanation
Indices: 51750--51789 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
51740 GAAAAGGACC
* *
51750 ATTTTGAATAAATTGGAAA
1 ATTTAGAATAAATTAGAAA
*
51769 ATTTAGAATAAATTATAAA
1 ATTTAGAATAAATTAGAAA
51788 AT
1 AT
51790 AATTCATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
ATTTAGAATAAATTAGAAA
Found at i:54339 original size:3 final size:3
Alignment explanation
Indices: 54326--54414 Score: 144
Period size: 3 Copynumber: 29.7 Consensus size: 3
54316 GGGATATAAA
54326 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
54373 GAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA TAT GTAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
54415 CAACTATTTG
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.03
3 75 0.94
4 3 0.04
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:58354 original size:55 final size:54
Alignment explanation
Indices: 58270--58411 Score: 176
Period size: 55 Copynumber: 2.6 Consensus size: 54
58260 ACATTCAAGT
* ** *
58270 GATTCATGAAGAATGACGTCCGATGAATGAAGAAATTTGAACCTAATTGAAGAAC
1 GATTCATGAAG-ATGACATCCGATGAATGAAGAAACCTGAAACTAATTGAAGAAC
* *
58325 GATTCATGAAGATGGACATCCGATGAATGAAGAAACCTGAAACTGATTGAAGATC
1 GATTCATGAAGAT-GACATCCGATGAATGAAGAAACCTGAAACTAATTGAAGAAC
* * *
58380 GATCCATGAAGAAAGACATCTGATGAATGAAG
1 GATTCATGAAG-ATGACATCCGATGAATGAAG
58412 TTTGAAATTG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
54 2 0.03
55 73 0.96
56 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (54 bp):
GATTCATGAAGATGACATCCGATGAATGAAGAAACCTGAAACTAATTGAAGAAC
Found at i:58775 original size:6 final size:6
Alignment explanation
Indices: 58764--58813 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
58754 ATTAACACCT
* *
58764 TTTGCA TTTGCA TTTAGCA TTTACA TCTAGCA TTTGCA TTTGCA -TTGCA
1 TTTGCA TTTGCA TTT-GCA TTTGCA T-TTGCA TTTGCA TTTGCA TTTGCA
58813 T
1 T
58814 GTATTTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
5 5 0.14
6 22 0.59
7 10 0.27
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (6 bp):
TTTGCA
Found at i:58785 original size:13 final size:13
Alignment explanation
Indices: 58767--58813 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
58757 AACACCTTTT
58767 GCATTTGCATTTA
1 GCATTTGCATTTA
* *
58780 GCATTTACATCTA
1 GCATTTGCATTTA
58793 GCATTTGCATTT-
1 GCATTTGCATTTA
58805 GCA-TTGCAT
1 GCATTTGCAT
58814 GTATTTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 6 0.20
12 3 0.10
13 21 0.70
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.43
Consensus pattern (13 bp):
GCATTTGCATTTA
Found at i:68357 original size:12 final size:12
Alignment explanation
Indices: 68340--68370 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
68330 GAGAAATGTT
68340 AAAAAAGAGAAA
1 AAAAAAGAGAAA
68352 AAAAAAGAGAAA
1 AAAAAAGAGAAA
68364 AGAAAAA
1 A-AAAAA
68371 TTGGAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAAGAGAAA
Found at i:71239 original size:36 final size:37
Alignment explanation
Indices: 71142--71310 Score: 250
Period size: 37 Copynumber: 4.6 Consensus size: 37
71132 GGAGATTGGG
* *
71142 GCAAAGTCAATCTTAAGCCTTCACCGAAGAGTAGTGAA
1 GCAAA-TCCATCTTAAGCCTTCACCAAAGAGTAGTGAA
71180 GCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAA
1 GCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAA
* * *
71217 GC-GATCTATCCTAAGCCTTCACCAAAGAGTAGTGAA
1 GCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAA
**
71253 GCAAATCCATCTTAAGCCTTCACTGAAGAGTAGTGAA
1 GCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAA
*
71290 GCAAATCCATTTTAAGCCTTC
1 GCAAATCCATCTTAAGCCTTC
71311 TCGAAATAGT
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
36 33 0.28
37 81 0.68
38 5 0.04
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (37 bp):
GCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAA
Found at i:71247 original size:73 final size:73
Alignment explanation
Indices: 71155--71291 Score: 247
Period size: 73 Copynumber: 1.9 Consensus size: 73
71145 AAGTCAATCT
*
71155 TAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAAGCG
1 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAAGCG
71220 ATCTATCC
66 ATCTATCC
**
71228 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACTGAAGAGTAGTGAAGC
1 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAAGC
71292 AAATCCATTT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 61 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (73 bp):
TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAAGCG
ATCTATCC
Found at i:71336 original size:73 final size:73
Alignment explanation
Indices: 71155--71310 Score: 222
Period size: 73 Copynumber: 2.1 Consensus size: 73
71145 AAGTCAATCT
* * *
71155 TAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACCAAAGAGTAGTGAAGCG
1 TAAGCCTTCACCAAAGAGTAGTGAAGCAAAACCATCTTAAGCCTTCACCAAAGAGTAGTGAAGCA
*
71220 ATCTATCC
66 ATCCATCC
* **
71228 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACTGAAGAGTAGTGAAGCA
1 TAAGCCTTCACCAAAGAGTAGTGAAGCAAAACCATCTTAAGCCTTCACCAAAGAGTAGTGAAGC-
**
71293 AATCCATTT
65 AATCCATCC
71302 TAAGCCTTC
1 TAAGCCTTC
71311 TCGAAATAGT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 61 0.81
74 14 0.19
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (73 bp):
TAAGCCTTCACCAAAGAGTAGTGAAGCAAAACCATCTTAAGCCTTCACCAAAGAGTAGTGAAGCA
ATCCATCC
Found at i:71778 original size:55 final size:55
Alignment explanation
Indices: 71714--71892 Score: 261
Period size: 55 Copynumber: 3.3 Consensus size: 55
71704 CCCGTTTACA
* *
71714 GAAGATTGTTCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACATGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * *
71769 GAAGGTTGTTCGAGTCTTATACTCTCTGAAGGAATAGGAAGCGGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * * * *
71824 GAAGATTGTTCGAGTCTTATACTCCCTAAAGGAATAGGGACCATACACGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
71879 GAAG-TTGTTCGAGT
1 GAAGATTGTTCGAGT
71893 TCCATACTCC
Statistics
Matches: 111, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 10 0.09
55 101 0.91
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
Found at i:71917 original size:54 final size:55
Alignment explanation
Indices: 71714--71917 Score: 180
Period size: 55 Copynumber: 3.7 Consensus size: 55
71704 CCCGTTTACA
* * * * * * * * *
71714 GAAGATTGTTCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACATGATTGTT
1 GAAGATTGTTCGAGTCTCATACTCCCTAAAGGAAGAGGGACCATACACGATTATT
* * * * * * * ** *
71769 GAAGGTTGTTCGAGTCTTATACTCTCTGAAGGAATAGGAAGCGGACACGATTGTT
1 GAAGATTGTTCGAGTCTCATACTCCCTAAAGGAAGAGGGACCATACACGATTATT
* *
71824 GAAGATTGTTCGAGTCTTATACTCCCTAAAGGAATAGGGACCATACACGATTATT
1 GAAGATTGTTCGAGTCTCATACTCCCTAAAGGAAGAGGGACCATACACGATTATT
71879 GAAG-TTGTTCGAGT-TCCATACTCCCTAAA-GAAGGAGGGA
1 GAAGATTGTTCGAGTCT-CATACTCCCTAAAGGAA-GAGGGA
71918 GCGAATCCGT
Statistics
Matches: 132, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
53 4 0.03
54 27 0.20
55 101 0.77
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTCATACTCCCTAAAGGAAGAGGGACCATACACGATTATT
Found at i:71948 original size:54 final size:53
Alignment explanation
Indices: 71890--72087 Score: 243
Period size: 54 Copynumber: 3.7 Consensus size: 53
71880 AAGTTGTTCG
* * *
71890 AGTTCCATACTCCCTAAAGAAGGAGGGAGCGAATCCGTTTGCAGAAGATTTTCT
1 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGTTTGCAGAAGATTTTCT
*
71944 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACTCGTTTGCAGAAAATTTTCT
1 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAAC-CGTTTGCAGAAGATTTTCT
* * * * *
71998 AGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCATTTTCAAAAGATTTCTCG
1 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAA-CCGTTTGCAGAAGATTT-TCT
* * * *
72053 ATTTCTATACTCCCTGAAGCAATAGGGAACGAACC
1 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACC
72088 CGCTGGTCAA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 94 0.75
55 31 0.25
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (53 bp):
AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCGTTTGCAGAAGATTTTCT
Found at i:72008 original size:108 final size:109
Alignment explanation
Indices: 71890--72086 Score: 270
Period size: 108 Copynumber: 1.8 Consensus size: 109
71880 AAGTTGTTCG
* * * * *
71890 AGTTCCATACTCCCTAAAGAAGGAGGGAGCGAATCCGTTTGCAGAAGATTT-TCTAGTTCTATAC
1 AGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGCAAAAGATTTCTCGAGTTCTATAC
*
71954 TCCCTGAAGAAAGAGGGAGCGAACTCGTTTGCAGAAAATTTTCT
66 TCCCTGAAGAAAGAGGGAACGAACTCGTTTGCAGAAAATTTTCT
* * * * *
71998 AGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCATTTTCAAAAGATTTCTCGATTTCTATAC
1 AGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGCAAAAGATTTCTCGAGTTCTATAC
* *
72063 TCCCTGAAGCAATAGGGAACGAAC
66 TCCCTGAAGAAAGAGGGAACGAAC
72087 CCGCTGGTCA
Statistics
Matches: 75, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
108 43 0.57
109 32 0.43
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (109 bp):
AGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGCAAAAGATTTCTCGAGTTCTATAC
TCCCTGAAGAAAGAGGGAACGAACTCGTTTGCAGAAAATTTTCT
Found at i:72286 original size:3 final size:3
Alignment explanation
Indices: 72262--72358 Score: 117
Period size: 3 Copynumber: 32.7 Consensus size: 3
72252 GAGATATAAA
* * * * *
72262 TAT TA- TAT TAT AAT AAT AAT TAT TAT TAT TAT TA- TAT GAT GAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
72308 TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
72354 TAT TA
1 TAT TA
72359 GAACTATTTG
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
2 4 0.05
3 78 0.92
4 3 0.04
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:86008 original size:23 final size:22
Alignment explanation
Indices: 85960--86013 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
85950 AAGATTTTGA
*
85960 TTTTTGTTTTAGATTTCAAACG
1 TTTTTGCTTTAGATTTCAAACG
85982 TTTTTGCTTTAGATTTCAAACG
1 TTTTTGCTTTAGATTTCAAACG
86004 TTTTTGCTTT
1 TTTTTGCTTT
86014 TTACTTTGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.11, G:0.13, T:0.57
Consensus pattern (22 bp):
TTTTTGCTTTAGATTTCAAACG
Found at i:86529 original size:2 final size:2
Alignment explanation
Indices: 86524--86806 Score: 112
Period size: 2 Copynumber: 151.5 Consensus size: 2
86514 TAAGAACATA
* *
86524 AT AT AT GAT AT A- AT A- AT ACT AT AT -T AT A- AT A- AT AA AT AC
1 AT AT AT -AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
86563 AT AT AT -T AT A- AT AT AT A- AT AT AT AT A- AT AT A- AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
86599 AT ACT AT A- AT AT TT A- AT AGT AT AT A- AT AT A- AT AT AT AT -T
1 AT A-T AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
86638 AT AT -T AT AT ACT AT AT ACT AT ACT AT A- AT -T AT A- AT AT AT
1 AT AT AT AT AT A-T AT AT A-T AT A-T AT AT AT AT AT AT AT AT AT
* *
86677 ACT AT AT A- AT AT A- AC AC A- AT AT AT A- AT ACT AT AT ACT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT
* * * *
86716 AT AA AT CT -T AT AT A- AT AT AT AT GCT AT AT A- AT AT ACC AT ACT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT A-T AT A-T
*
86758 AT AT A- AT AT AT A- AT AT AT A- AA AT A- AT AT AT A- AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
86796 AT A- AT -T AT AT A
1 AT AT AT AT AT AT A
86807 AAAAGAAACC
Statistics
Matches: 219, Mismatches: 14, Indels: 96
0.67 0.04 0.29
Matches are distributed among these distances:
1 34 0.16
2 159 0.73
3 26 0.12
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (2 bp):
AT
Found at i:86577 original size:5 final size:5
Alignment explanation
Indices: 86521--86800 Score: 88
Period size: 5 Copynumber: 55.0 Consensus size: 5
86511 ATATAAGAAC
* * *
86521 ATAAT ATATGAT ATAAT AATACT ATATT ATAAT AATAA- ATACAT ATATT
1 ATAAT ATA--AT ATAAT -ATAAT ATAAT ATAAT -ATAAT ATA-AT ATAAT
*
86570 ATAAT AT-AT AATATAT ATAAT ATAAT ATAAT ACT-AT A-ATAT TTAAT
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT ATAAT A-TAAT ATA-AT ATAAT
* * * *
86616 AGT-AT ATAAT ATAAT AT-AT ATTAT ATTAT ATACTAT ATACT ATACT
1 A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA--AT ATAAT ATAAT
* * *
86662 ATAATT ATAAT AT-AT ACT-AT ATAAT ATAAC ACAAT AT-AT AATACT
1 ATAA-T ATAAT ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
* * * **
86707 AT-AT ACT-AT ATAAAT CTTAT ATAAT AT-AT ATGCTAT ATAAT ATACC
1 ATAAT A-TAAT AT-AAT ATAAT ATAAT ATAAT AT--AAT ATAAT ATAAT
* * *
86753 ATACT AT-AT A-ATAT ATAAT AT-AT AAAAT A-ATAT ATAAT ATAGT ATAAT
1 ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT
86801 TATATAAAAA
Statistics
Matches: 212, Mismatches: 28, Indels: 70
0.68 0.09 0.23
Matches are distributed among these distances:
4 29 0.14
5 139 0.66
6 28 0.13
7 16 0.08
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:86579 original size:7 final size:7
Alignment explanation
Indices: 86499--86793 Score: 149
Period size: 7 Copynumber: 41.4 Consensus size: 7
86489 CAAATCTTAA
86499 ATATAA-
1 ATATAAT
86505 AT-TAAT
1 ATATAAT
*
86511 ATATAAGA
1 ATATAA-T
*
86519 ACATAAT
1 ATATAAT
*
86526 ATATGAT
1 ATATAAT
86533 ATAATAAT
1 AT-ATAAT
86541 ACTAT-AT
1 A-TATAAT
86548 -TATAAT
1 ATATAAT
86554 A-ATAA-
1 ATATAAT
*
86559 ATACATAT
1 ATATA-AT
86567 ATTATAAT
1 A-TATAAT
86575 ATATAAT
1 ATATAAT
86582 ATAT-AT
1 ATATAAT
86588 A-AT-AT
1 ATATAAT
86593 AATATAAT
1 -ATATAAT
86601 ACTATAAT
1 A-TATAAT
*
86609 ATTTAAT
1 ATATAAT
86616 AGTAT-AT
1 A-TATAAT
86623 AATATAAT
1 -ATATAAT
86631 ATAT-AT
1 ATATAAT
*
86637 -TATATT
1 ATATAAT
*
86643 ATATACT
1 ATATAAT
86650 ATATACTAT
1 ATATA--AT
86659 ACTATAAT
1 A-TATAAT
86667 -TATAAT
1 ATATAAT
*
86673 ATATACT
1 ATATAAT
86680 ATATAAT
1 ATATAAT
*
86687 ATAACACAAT
1 AT---ATAAT
86697 ATATAAT
1 ATATAAT
86704 ACTATATACT
1 A-TATA-A-T
86714 ATATAA-
1 ATATAAT
*
86720 ATCT--T
1 ATATAAT
86725 ATATAAT
1 ATATAAT
*
86732 ATATATGCT
1 ATATA--AT
86741 ATATAAT
1 ATATAAT
*
86748 ATACCATACT
1 AT---ATAAT
86758 ATATAAT
1 ATATAAT
86765 ATATAAT
1 ATATAAT
86772 ATATAA-
1 ATATAAT
86778 A-ATAAT
1 ATATAAT
86784 ATATAAT
1 ATATAAT
86791 ATA
1 ATA
86794 GTATAATTAT
Statistics
Matches: 226, Mismatches: 23, Indels: 79
0.69 0.07 0.24
Matches are distributed among these distances:
5 21 0.09
6 30 0.13
7 103 0.46
8 37 0.16
9 17 0.08
10 18 0.08
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (7 bp):
ATATAAT
Found at i:86584 original size:49 final size:47
Alignment explanation
Indices: 86521--86807 Score: 169
Period size: 44 Copynumber: 6.2 Consensus size: 47
86511 ATATAAGAAC
* *
86521 ATAATATATGATATAATAATACTATATTATAATAATAAATACATATATT
1 ATAATATATAATATAATAATA-TATATTATAATACT-AATACATATATT
86570 ATAATATATAATATATATAATATA-A-TATAATACT-ATA-ATAT-TT
1 ATAATATATAATATA-ATAATATATATTATAATACTAATACATATATT
* *
86613 AATAGTATATAATATAATATATATTATATTAT-ATACTATATAC-TATACT
1 -ATAATATATAATATAATA-ATA-TATATTATAATACTA-ATACATATATT
* * * * *
86662 ATAAT-TATAATAT-ATACTATATAATATAACAC-AATATATAATACT
1 ATAATATATAATATAATAATATATATTATAATACTAATACAT-ATATT
** * * **
86707 AT-ATACTAT-ATA-AATCTTATATAATATATATGCTATATA-ATATACC
1 ATAATA-TATAATATAATAATATATATTATA-ATACTA-ATACATATATT
* ** *
86753 ATACTATATAATAT-ATAATATATAAAATAATA-T-ATA-ATATAGT
1 ATAATATATAATATAATAATATATATTATAATACTAATACATATATT
86796 ATAATTATATAA
1 ATAA-TATATAA
86808 AAAGAAACCT
Statistics
Matches: 193, Mismatches: 22, Indels: 51
0.73 0.08 0.19
Matches are distributed among these distances:
43 19 0.10
44 39 0.20
45 34 0.18
46 25 0.13
47 39 0.20
48 14 0.07
49 17 0.09
50 6 0.03
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (47 bp):
ATAATATATAATATAATAATATATATTATAATACTAATACATATATT
Found at i:86635 original size:12 final size:12
Alignment explanation
Indices: 86521--86798 Score: 140
Period size: 12 Copynumber: 23.7 Consensus size: 12
86511 ATATAAGAAC
*
86521 ATAATATATGAT
1 ATAATATATAAT
*
86533 ATAATA-ATACT
1 ATAATATATAAT
*
86544 ATATTATAATAAT
1 ATAATAT-ATAAT
*
86557 A-AATACATATATT
1 ATAAT--ATATAAT
86570 ATAATATAT-A-
1 ATAATATATAAT
86580 AT-ATATATAAT
1 ATAATATATAAT
*
86591 ATAATATAATACT
1 ATAATAT-ATAAT
*
86604 ATAATAT-TTA-
1 ATAATATATAAT
*
86614 ATAGTATATAAT
1 ATAATATATAAT
*
86626 ATAATATATATT
1 ATAATATATAAT
* *
86638 ATATTATATACT
1 ATAATATATAAT
*
86650 AT-ATACTATACT
1 ATAATA-TATAAT
86662 ATAAT-TATAAT
1 ATAATATATAAT
86673 ATATACTATATAAT
1 ATA-A-TATATAAT
* *
86687 ATAACACA-ATAT
1 ATAATATATA-AT
*
86699 ATAATA-CT-AT
1 ATAATATATAAT
*
86709 ATACTATATAA-
1 ATAATATATAAT
**
86720 ATCTTATATAAT
1 ATAATATATAAT
*
86732 AT-ATATGCT-AT
1 ATAATAT-ATAAT
**
86743 ATAATATACCAT
1 ATAATATATAAT
86755 ACT-ATATA-ATAT
1 A-TAATATATA-AT
*
86767 ATAATATATAAA
1 ATAATATATAAT
86779 ATAATATATAAT
1 ATAATATATAAT
*
86791 ATAGTATA
1 ATAATATA
86799 ATTATATAAA
Statistics
Matches: 204, Mismatches: 34, Indels: 56
0.69 0.12 0.19
Matches are distributed among these distances:
9 6 0.03
10 16 0.08
11 42 0.21
12 99 0.49
13 27 0.13
14 14 0.07
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (12 bp):
ATAATATATAAT
Found at i:86683 original size:61 final size:59
Alignment explanation
Indices: 86518--86776 Score: 197
Period size: 61 Copynumber: 4.4 Consensus size: 59
86508 AATATATAAG
* * *
86518 AACATA-ATATATGATATAATA-ATACTATA-T-T-ATAATAATAAATAC-ATATATTAT
1 AACATATATATAT-ATATAATATATACTATACTATAATTATAATATATACTATATAATAT
* * *
86572 AATATATA-ATATATATAATATAATA-TAATACTATAA-TAT-TTA-ATAGTATATAATAT
1 AACATATATATATATATAATAT-ATACT-ATACTATAATTATAATATATACTATATAATAT
* *
86628 AATATATATTATATTATATACTATATACTATACTATAATTATAATATATACTATATAATAT
1 AACATATA-TATA-TATATAATATATACTATACTATAATTATAATATATACTATATAATAT
* *
86689 AACACA-ATATATA-ATACTATATACTATA-TA-AATCTTATATAATATATATGCTATATAATAT
1 AACATATATATATATATAATATATACTATACTATAA---T-TATAATATATA--CTATATAATAT
*
86750 ACCATACTATATAATATATAATATATA
1 AACATA-TATAT-ATATATAATATATA
86777 AAATAATATA
Statistics
Matches: 167, Mismatches: 13, Indels: 39
0.76 0.06 0.18
Matches are distributed among these distances:
53 8 0.05
54 10 0.06
55 12 0.07
56 21 0.13
57 18 0.11
58 19 0.11
59 28 0.17
60 3 0.02
61 32 0.19
63 4 0.02
64 3 0.02
65 9 0.05
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.41
Consensus pattern (59 bp):
AACATATATATATATATAATATATACTATACTATAATTATAATATATACTATATAATAT
Found at i:88452 original size:22 final size:22
Alignment explanation
Indices: 88427--88469 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
88417 TTGATAAATA
*
88427 TATAGAGGTATAAAATATATTG
1 TATAAAGGTATAAAATATATTG
*
88449 TATAAAGTTATAAAATATATT
1 TATAAAGGTATAAAATATATT
88470 AGACTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.40
Consensus pattern (22 bp):
TATAAAGGTATAAAATATATTG
Found at i:89081 original size:50 final size:51
Alignment explanation
Indices: 89021--89117 Score: 133
Period size: 52 Copynumber: 1.9 Consensus size: 51
89011 TTGTAAAAAA
* * * *
89021 AAAACTTGTAAATGCTAGAA-TACTTTTTTATAAATGAACTTTAGGATTAG
1 AAAACATGTAAATGCTAGAAGGACCTTTTTATAAATCAACTTTAGGATTAG
*
89071 AAAACATGTAAATTCTAGAAGGGACCTTTTTATAAATCAACTTTAGG
1 AAAACATGTAAATGCTAGAA-GGACCTTTTTATAAATCAACTTTAGG
89118 GTTCAAATCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 18 0.45
52 22 0.55
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.35
Consensus pattern (51 bp):
AAAACATGTAAATGCTAGAAGGACCTTTTTATAAATCAACTTTAGGATTAG
Found at i:93354 original size:34 final size:33
Alignment explanation
Indices: 93316--93399 Score: 91
Period size: 34 Copynumber: 2.5 Consensus size: 33
93306 GTAATAAACA
*
93316 AAATTAACCAAAATACATTAACAA-AAAGTCCAA-C
1 AAATTAA-CAAAATAAATTAA-AATAAA-TCCAACC
93350 AAATTTAACAAAATAAATTAAAATAAATCCAACC
1 AAA-TTAACAAAATAAATTAAAATAAATCCAACC
**
93384 AAATTAATGAAATAAA
1 AAATTAACAAAATAAA
93400 GTATTAAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
33 18 0.41
34 22 0.50
35 4 0.09
ACGTcount: A:0.62, C:0.14, G:0.02, T:0.21
Consensus pattern (33 bp):
AAATTAACAAAATAAATTAAAATAAATCCAACC
Found at i:93399 original size:33 final size:34
Alignment explanation
Indices: 93312--93388 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 34
93302 AATGGTAATA
* *
93312 AACAAAATTAACCAAAATACATTAACAAAAAGTCC
1 AACAAATTTAA-CAAAATAAATTAACAAAAAGTCC
93347 AACAAATTTAACAAAATAAATTAA-AATAAA-TCC
1 AACAAATTTAACAAAATAAATTAACAA-AAAGTCC
93380 AACCAAATT
1 AA-CAAATT
93389 AATGAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 7 0.18
34 21 0.55
35 10 0.26
ACGTcount: A:0.61, C:0.17, G:0.01, T:0.21
Consensus pattern (34 bp):
AACAAATTTAACAAAATAAATTAACAAAAAGTCC
Found at i:93462 original size:23 final size:23
Alignment explanation
Indices: 93436--93479 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
93426 TACAATAAAA
* * *
93436 AAATCTAATAAACAACTAAATAC
1 AAATATAATAAAAAACAAAATAC
93459 AAATATAATAAAAAACAAAAT
1 AAATATAATAAAAAACAAAAT
93480 CTATCGATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATATAATAAAAAACAAAATAC
Found at i:93906 original size:33 final size:33
Alignment explanation
Indices: 93864--93926 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
93854 TCCTCCAGGA
* *
93864 GGGGTCATAAAACTC-TGTGACGGTGACGGCAGC
1 GGGGTCATAAAAC-CAGGTGACGATGACGGCAGC
93897 GGGGTCATAAAACCAGGTGACGATGACGGC
1 GGGGTCATAAAACCAGGTGACGATGACGGC
93927 GAAGATATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.27, C:0.21, G:0.37, T:0.16
Consensus pattern (33 bp):
GGGGTCATAAAACCAGGTGACGATGACGGCAGC
Found at i:95578 original size:24 final size:24
Alignment explanation
Indices: 95539--95601 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
95529 ACTAAATAAA
*
95539 TAAA-TAAATTATAACTAATAATT
1 TAAATTAAATTAAAACTAATAATT
*
95562 TAAATTAAATTAAAACTTATAATT
1 TAAATTAAATTAAAACTAATAATT
95586 TAAATTAAATTAAAAC
1 TAAATTAAATTAAAAC
95602 GTTAAAACGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
23 4 0.11
24 33 0.89
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (24 bp):
TAAATTAAATTAAAACTAATAATT
Found at i:95758 original size:20 final size:21
Alignment explanation
Indices: 95719--95759 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
95709 TAAAAAATTT
95719 AAATACTTAAATAAATTAAAA
1 AAATACTTAAATAAATTAAAA
95740 AAATA-TTAAATATAA-TAAAA
1 AAATACTTAAATA-AATTAAAA
95760 TATACATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATACTTAAATAAATTAAAA
Found at i:96400 original size:17 final size:17
Alignment explanation
Indices: 96378--96412 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96368 TTACGTATTA
*
96378 ATTATTAAATATTTAAT
1 ATTATTAAATATTCAAT
*
96395 ATTATTAATTATTCAAT
1 ATTATTAAATATTCAAT
96412 A
1 A
96413 CACTACGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTATTAAATATTCAAT
Found at i:96562 original size:14 final size:14
Alignment explanation
Indices: 96543--96569 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96533 GTATTTTATT
96543 TTTTTATTAATTAG
1 TTTTTATTAATTAG
96557 TTTTTATTAATTA
1 TTTTTATTAATTA
96570 TTAATATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
TTTTTATTAATTAG
Found at i:98121 original size:18 final size:19
Alignment explanation
Indices: 98086--98125 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
98076 ATTTAAAAAT
*
98086 TAAATTAATATGAATGAAA
1 TAAAATAATATGAATGAAA
98105 TAAAATAATAT-AATGAAA
1 TAAAATAATATGAATGAAA
98123 TAA
1 TAA
98126 GCAATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
TAAAATAATATGAATGAAA
Found at i:98297 original size:16 final size:16
Alignment explanation
Indices: 98278--98312 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
98268 TTTAAAAAAC
* *
98278 AAAAGGACTAAATTAT
1 AAAAGGACAAAATGAT
98294 AAAAGGACAAAATGAT
1 AAAAGGACAAAATGAT
98310 AAA
1 AAA
98313 GCATAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.14, T:0.17
Consensus pattern (16 bp):
AAAAGGACAAAATGAT
Found at i:100005 original size:91 final size:93
Alignment explanation
Indices: 99848--100016 Score: 279
Period size: 91 Copynumber: 1.8 Consensus size: 93
99838 TGTTGAAGAC
*
99848 GACACTGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACATGGTTCCA
1 GACACTGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACACGGTTCCA
*
99913 CTCTGCTGGGGACATCTGGCCGAGGGAT
66 CTCTGCTGCGGACATCTGGCCGAGGGAT
* * *
99941 GACACTGCTCATCCGCGATGAAGAG-TTC-TGGCCATCTTTAGGAATGATGCTAACACGGTTCCA
1 GACACTGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACACGGTTCCA
100004 CTCTGCTGCGGAC
66 CTCTGCTGCGGAC
100017 GGTTGGTTAT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 44 0.62
92 2 0.03
93 25 0.35
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (93 bp):
GACACTGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACACGGTTCCA
CTCTGCTGCGGACATCTGGCCGAGGGAT
Found at i:100168 original size:130 final size:128
Alignment explanation
Indices: 99926--100410 Score: 648
Period size: 130 Copynumber: 3.7 Consensus size: 128
99916 TGCTGGGGAC
* * * * * *
99926 ATCTGGCCGAGGGATGACACTGCTCATCCGCGATGAAGAGTTCTGGCCATCTTTAGGAATGATGC
1 ATCTGGTCG-GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATC--TA--AA-GGTGA
* * * * *
99991 TAACACGGTTCC-ACTCTGCTGCGGACGGTTGGTTATCTGAGGTTGACACGGCTCATACGTGATG
60 TAACACGGTTCCTAC-GTGATGAGGACGGCTGGTTATCTAAGGTTGACACGGCTCATACGTGATG
100055 AAGAG
124 AAGAG
* * *** *
100060 TTCTGGGCAGGGGATGACATTACTCATACATGATGAAGAGTTCTTGGCCATCTAAAGGTGATAAC
1 ATCTGGTC-GGGGATGACACGGCTCATACGTGATGAAGAGTTC-TGGCCATCTAAAGGTGATAAC
* *
100125 ACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAAGAG
64 ACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGTTGACACGGCTCATACGTGATGAAGAG
* *
100190 GTCTGGTCGAGGAATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACA
1 ATCTGGTCG-GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACA
*
100255 CGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACGTGATGAAGAG
65 CGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGTTGACACGGCTCATACGTGATGAAGAG
*
100319 ATCTGGTCTGGGGAATGACACGGCTCATACGTGATGAAGAGTTATGGCCATCTAAAGGTGATAAC
1 ATCTGGTC-GGGG-ATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAAC
100384 ACGGTTCCTACGTGATGAGGACGGCTG
64 ACGGTTCCTACGTGATGAGGACGGCTG
100411 ACCATCTTTA
Statistics
Matches: 316, Mismatches: 29, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
129 93 0.29
130 174 0.55
131 4 0.01
133 2 0.01
134 34 0.11
135 9 0.03
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (128 bp):
ATCTGGTCGGGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACAC
GGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGTTGACACGGCTCATACGTGATGAAGAG
Found at i:100177 original size:43 final size:43
Alignment explanation
Indices: 100123--100359 Score: 168
Period size: 43 Copynumber: 5.6 Consensus size: 43
100113 AAAGGTGATA
* *
100123 ACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGG-GTG
1 ACACGGCTCCTACGTGATGAAGA-GGCTGGTTATCTAAGGAGTG
* *
100166 ACACGGCTCCTACGTGATGAAGAGGTCTGG---TC-GAGGAATG
1 ACACGGCTCCTACGTGATGAAGAGG-CTGGTTATCTAAGGAGTG
* * ** * *
100206 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAAGAG-GCTGGTTATCT-AAGGAG-TG
* * * *
100252 ACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGG-TTG
1 ACACGGCTCCTACGTGATGAAGA-GGCTGGTTATCTAAGGAGTG
* * ** *
100295 ACACGGCTCATACGTGATGAAGAGATCTGG---TCTGGGGAATG
1 ACACGGCTCCTACGTGATGAAGAG-GCTGGTTATCTAAGGAGTG
*
100336 ACACGGCTCATACGTGATGAAGAG
1 ACACGGCTCCTACGTGATGAAGAG
100360 TTATGGCCAT
Statistics
Matches: 156, Mismatches: 26, Indels: 26
0.75 0.12 0.12
Matches are distributed among these distances:
39 3 0.02
40 36 0.23
41 26 0.17
42 3 0.02
43 52 0.33
45 6 0.04
46 29 0.19
47 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (43 bp):
ACACGGCTCCTACGTGATGAAGAGGCTGGTTATCTAAGGAGTG
Found at i:100220 original size:40 final size:42
Alignment explanation
Indices: 100025--100359 Score: 188
Period size: 40 Copynumber: 7.9 Consensus size: 42
100015 ACGGTTGGTT
* *
100025 ATCTGAGG-TTGACACGGCTCATACGTGATGAAGAGTTCTGG
1 ATCTGAGGAATGACACGGCTCATACGTGATGAAGAGGTCTGG
* * * *** * *
100066 -GCAG-GGGATGACATTACTCATACATGATGAAGAGTTCTTGG
1 ATCTGAGGAATGACACGGCTCATACGTGATGAAGAGGTC-TGG
* * * * * *
100107 CCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG-CTGG
1 --ATCT-GAGG-AATGACACGGCTCATACGTGATGAAGA-GGTCTGG
* * *
100153 TTATCTAAGG-GTGACACGGCTCCTACGTGATGAAGAGGTCTGG
1 --ATCTGAGGAATGACACGGCTCATACGTGATGAAGAGGTCTGG
*
100196 -TC-GAGGAATGACACGGCTCATACGTGATGAAGAGTTCTGG
1 ATCTGAGGAATGACACGGCTCATACGTGATGAAGAGGTCTGG
* * * * * *
100236 CCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG-CTGG
1 --ATCT-GAGG-AATGACACGGCTCATACGTGATGAAGA-GGTCTGG
* *
100282 TTATCT-ATGG-TTGACACGGCTCATACGTGATGAAGAGATCTGG
1 --ATCTGA-GGAATGACACGGCTCATACGTGATGAAGAGGTCTGG
*
100325 -TCTGGGGAATGACACGGCTCATACGTGATGAAGAG
1 ATCTGAGGAATGACACGGCTCATACGTGATGAAGAG
100360 TTATGGCCAT
Statistics
Matches: 226, Mismatches: 46, Indels: 44
0.72 0.15 0.14
Matches are distributed among these distances:
39 5 0.02
40 64 0.28
41 29 0.13
42 3 0.01
43 53 0.23
44 2 0.01
45 9 0.04
46 39 0.17
47 21 0.09
48 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (42 bp):
ATCTGAGGAATGACACGGCTCATACGTGATGAAGAGGTCTGG
Found at i:100403 original size:259 final size:262
Alignment explanation
Indices: 99927--100410 Score: 710
Period size: 259 Copynumber: 1.9 Consensus size: 262
99917 GCTGGGGACA
* * * *
99927 TCTGGCCGAGGGATGACACTGCTCATCCGCGATGAAGAGTTCTGGCCATCTTTAGGAATGATGCT
1 TCTGGCCGAGGAATGACACGGCTCATACGCGATGAAGAGTTCTGGCCATC-TTA-GAATGATGAT
* * *
99992 AACACGGTTCCACTCTGCTGCGGACGGTTGGTTATCTGAGGTTGACACGGCTCATACGTGATGAA
64 AACACGGTTCCACTCTGATGAGGACGGCTGGTTATCTGAGGTTGACACGGCTCATACGTGATGAA
* ** *
100057 GAGTTCTGGGCAGGGGATGACATTACTCATACATGATGAAGAGTTCTTGGCCATCTAAAGGTGAT
129 GAGATCTGGGCAGGGGATGACACGACTCATACATGATGAAGAGTTCATGGCCATCTAAAGGTGAT
100122 AACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAA
194 AACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAA
100187 GAGG
259 GAGG
* * *
100191 TCTGGTCGAGGAATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATC-TA-AA-GGTGATAA
1 TCTGGCCGAGGAATGACACGGCTCATACGCGATGAAGAGTTCTGGCCATCTTAGAATGATGATAA
*
100253 CACGGTTCCTAC-GTGATGAGGACGGCTGGTTATCT-ATGGTTGACACGGCTCATACGTGATGAA
66 CACGGTTCC-ACTCTGATGAGGACGGCTGGTTATCTGA-GGTTGACACGGCTCATACGTGATGAA
* * * *
100316 GAGATCTGGTCTGGGGAATGACACGGCTCATACGTGATGAAGAGTT-ATGGCCATCTAAAGGTGA
129 GAGATCTGGGCAGGGG-ATGACACGACTCATACATGATGAAGAGTTCATGGCCATCTAAAGGTGA
100380 TAACACGGTTCCTACGTGATGAGGACGGCTG
193 TAACACGGTTCCTACGTGATGAGGACGGCTG
100411 ACCATCTTTA
Statistics
Matches: 198, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
258 1 0.01
259 121 0.61
260 29 0.15
262 2 0.01
264 45 0.23
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (262 bp):
TCTGGCCGAGGAATGACACGGCTCATACGCGATGAAGAGTTCTGGCCATCTTAGAATGATGATAA
CACGGTTCCACTCTGATGAGGACGGCTGGTTATCTGAGGTTGACACGGCTCATACGTGATGAAGA
GATCTGGGCAGGGGATGACACGACTCATACATGATGAAGAGTTCATGGCCATCTAAAGGTGATAA
CACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAAGA
GG
Found at i:100416 original size:46 final size:44
Alignment explanation
Indices: 100090--100417 Score: 207
Period size: 46 Copynumber: 7.5 Consensus size: 44
100080 TACTCATACA
* * *
100090 TGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGTTCCTACG
1 TGATGAAGAG-GC-TGGCCATCT-AAGGTGATGACACGGCTCCTACG
* **
100137 TGATGAGGACGGCTGGTTATCTAAGG-G-TGACACGGCTCCTACG
1 TGATGAAGA-GGCTGGCCATCTAAGGTGATGACACGGCTCCTACG
* * *
100180 TGATGAAGAGGTCTGG---TC-GAGG-AATGACACGGCTCATACG
1 TGATGAAGAGG-CTGGCCATCTAAGGTGATGACACGGCTCCTACG
* * *
100220 TGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACG
1 TGATGAAGAG-GCTGGCCATCT-AAGGTGATGACACGGCTCCTACG
* ** * *
100266 TGATGAGGACGGCTGGTTATCTATGGT--TGACACGGCTCATACG
1 TGATGAAGA-GGCTGGCCATCTAAGGTGATGACACGGCTCCTACG
* * *
100309 TGATGAAGAGATCTGG---TCT--GGGGAATGACACGGCTCATACG
1 TGATGAAGAG-GCTGGCCATCTAAGGTG-ATGACACGGCTCCTACG
** * *
100350 TGATGAAGAGTTATGGCCATCTAAAGGTGATAACACGGTTCCTACG
1 TGATGAAGAG-GCTGGCCATCT-AAGGTGATGACACGGCTCCTACG
* *
100396 TGATGAGGACGGCTGACCATCT
1 TGATGAAGA-GGCTGGCCATCT
100418 TTAGGAGTTA
Statistics
Matches: 222, Mismatches: 37, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
38 2 0.01
39 3 0.01
40 34 0.15
41 30 0.14
42 3 0.01
43 53 0.24
44 4 0.02
45 11 0.05
46 67 0.30
47 14 0.06
48 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (44 bp):
TGATGAAGAGGCTGGCCATCTAAGGTGATGACACGGCTCCTACG
Found at i:100470 original size:28 final size:28
Alignment explanation
Indices: 100450--100518 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 28
100440 AAACCAAATT
100450 AAAGATTTGTTTCAAAAGAAACAAACCC
1 AAAGATTTGTTTCAAAAGAAACAAACCC
* *
100478 AAAGATTTGTTTCAAGAA-AAACATACTC
1 AAAGATTTGTTTCAA-AAGAAACAAACCC
100506 AAAGACTTTGTTT
1 AAAGA-TTTGTTT
100519 GTTTTGTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 28 0.76
29 9 0.24
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (28 bp):
AAAGATTTGTTTCAAAAGAAACAAACCC
Found at i:100840 original size:15 final size:16
Alignment explanation
Indices: 100815--100862 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
100805 AAAGATGATC
*
100815 TTGTTTTAAGAGAAAA
1 TTGTTTCAAGAGAAAA
100831 -TGTTTCAAGAGACAAA
1 TTGTTTCAAGAGA-AAA
*
100847 TTCGTTTCAAGGGAAA
1 TT-GTTTCAAGAGAAA
100863 CGACTCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 11 0.41
16 3 0.11
17 3 0.11
18 10 0.37
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (16 bp):
TTGTTTCAAGAGAAAA
Found at i:101330 original size:66 final size:66
Alignment explanation
Indices: 101242--101385 Score: 175
Period size: 67 Copynumber: 2.2 Consensus size: 66
101232 AAAGATTTAC
* * * * *
101242 TTCAAGAGAAATGGTCTCAAGAGATACAAAATTCAT-TTT-AAGAGAAACAGATTCAAAGATTTT
1 TTCAAAAGAAATGATCTCAAGAGAGACAAAATT-ATGTTTCAA-AGAAACAAACTCAAAGATTTT
101305 TGT
64 TGT
* * *
101308 TTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
1 TTCAAAAGAAATGATCTCAAGAGAGACAAAATTATGTTT-CAAAGAAACAAACTCAAAGATTTTT
101373 GT
65 GT
101375 TTCAAAAGAAA
1 TTCAAAAGAAA
101386 CACTCTCAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
65 1 0.01
66 31 0.46
67 33 0.49
68 2 0.03
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (66 bp):
TTCAAAAGAAATGATCTCAAGAGAGACAAAATTATGTTTCAAAGAAACAAACTCAAAGATTTTTG
T
Found at i:101373 original size:30 final size:30
Alignment explanation
Indices: 101339--101402 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
101329 AGAGACAAAA
*
101339 TTTTGTTTCCAAAGAAACAAACTCAAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
**
101369 TTTTGTTTCAAAAGAAACACTCTCAAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
101399 TTTT
1 TTTT
101403 TCACAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (30 bp):
TTTTGTTTCAAAAGAAACAAACTCAAAGAT
Found at i:101464 original size:52 final size:53
Alignment explanation
Indices: 101390--101492 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 53
101380 AAGAAACACT
*
101390 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAACACTTTGTTTCAGA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
*
101443 CTCAAAGA-TTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCA
101493 AAATAAATAG
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 40 0.83
53 8 0.17
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (53 bp):
CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
Found at i:101519 original size:28 final size:28
Alignment explanation
Indices: 101488--101613 Score: 137
Period size: 28 Copynumber: 4.5 Consensus size: 28
101478 CAAAACTTTG
* *
101488 TTTCAAAATAAATAGACTCAAAGATTTT
1 TTTCAAAAGAAACAGACTCAAAGATTTT
101516 TTTCAAAAGAAACA-ACTCAAAGATATTT
1 TTTCAAAAGAAACAGACTCAAAGAT-TTT
* * * *
101544 ATTCAAAAGGAACAAACTCCAAGATTTT
1 TTTCAAAAGAAACAGACTCAAAGATTTT
* *
101572 TATTCAAAAGGAACAGACTCAAAGATTTA
1 T-TTCAAAAGAAACAGACTCAAAGATTTT
* *
101601 TCTCAAGAGAAAC
1 TTTCAAAAGAAAC
101614 TGTCTCCAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 10 0.12
28 39 0.47
29 34 0.41
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (28 bp):
TTTCAAAAGAAACAGACTCAAAGATTTT
Found at i:101562 original size:29 final size:28
Alignment explanation
Indices: 101503--101599 Score: 133
Period size: 29 Copynumber: 3.4 Consensus size: 28
101493 AAATAAATAG
* *
101503 ACTCAAAGATTTTTTTCAAAAGAAAC-A
1 ACTCAAAGATTTTATTCAAAAGGAACAA
101530 ACTCAAAGATATTTATTCAAAAGGAACAA
1 ACTCAAAGAT-TTTATTCAAAAGGAACAA
* *
101559 ACTCCAAGATTTTTATTCAAAAGGAACAG
1 ACTCAAAGA-TTTTATTCAAAAGGAACAA
101588 ACTCAAAGATTT
1 ACTCAAAGATTT
101600 ATCTCAAGAG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.16
28 17 0.27
29 34 0.55
30 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (28 bp):
ACTCAAAGATTTTATTCAAAAGGAACAA
Found at i:101941 original size:36 final size:35
Alignment explanation
Indices: 101857--101954 Score: 110
Period size: 36 Copynumber: 2.8 Consensus size: 35
101847 GAGAAAATGA
* *
101857 TGTCTCAAGCGAGACGAAATTTG-CTTTAAGATAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAAGATAT
* **
101891 AGTCTCAAATGAGACAAAATTTGTTTTTAGAGCA-AT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTA-AG-ATAT
*
101927 TGTCTCAAGCGAGACAAAGTTTGTTTTT
1 TGTCTCAAGCGAGACAAAATTTGTTTTT
101955 GAGAAAACGA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 19 0.37
35 4 0.08
36 28 0.54
37 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (35 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAAGATAT
Found at i:101969 original size:36 final size:36
Alignment explanation
Indices: 101858--101971 Score: 101
Period size: 36 Copynumber: 3.2 Consensus size: 36
101848 AGAAAATGAT
* * *
101858 GTCTCAAGCGAGACGAAATTTG-CTTTA-AGATATA-
1 GTCTCAAGCGAGACAAAATTTGTTTTTAGAGA-AAAC
** * **
101892 GTCTCAAATGAGACAAAATTTGTTTTTAGAGCAATT
1 GTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAAC
*
101928 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAAC
101963 GATCTCAAG
1 G-TCTCAAG
101972 TGAAATCAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
34 19 0.30
35 11 0.17
36 33 0.52
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (36 bp):
GTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAAC
Found at i:102643 original size:10 final size:10
Alignment explanation
Indices: 102628--102668 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
102618 TTATGTATCA
102628 TGTATGTATG
1 TGTATGTATG
102638 TGTATGTA--
1 TGTATGTATG
102646 TGTATGTATG
1 TGTATGTATG
102656 TGTTGATGTATG
1 TG-T-ATGTATG
102668 T
1 T
102669 TTTTCTCGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 8 0.30
10 10 0.37
11 1 0.04
12 8 0.30
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (10 bp):
TGTATGTATG
Found at i:102650 original size:18 final size:16
Alignment explanation
Indices: 102627--102668 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 16
102617 TTTATGTATC
102627 ATGTATGTATGTGTATG
1 ATGTATGTATGTGT-TG
102644 TATGTATGTATGTGTTG
1 -ATGTATGTATGTGTTG
102661 ATGTATGT
1 ATGTATGT
102669 TTTTCTCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.33
17 2 0.08
18 14 0.58
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (16 bp):
ATGTATGTATGTGTTG
Found at i:104552 original size:26 final size:23
Alignment explanation
Indices: 104521--104591 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 23
104511 TCAAGGTGGA
104521 AAGAATATTTCAAGGTCTCAAAG
1 AAGAATATTTCAAGGTCTCAAAG
* *
104544 AGAGGGAATGTTTCAAGG--TCGAA-
1 A-A--GAATATTTCAAGGTCTCAAAG
104567 AAGAATATTTCAAGGTCTCAAAG
1 AAGAATATTTCAAGGTCTCAAAG
104590 AA
1 AA
104592 ATAGAATGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
20 12 0.32
22 5 0.13
23 4 0.11
24 5 0.13
26 12 0.32
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (23 bp):
AAGAATATTTCAAGGTCTCAAAG
Found at i:104577 original size:20 final size:20
Alignment explanation
Indices: 104509--104583 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
104499 AAATGCAATG
*
104509 TTTCAAGGT-GGAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
* *
104528 TTTCAAGGTCTCAAAGAGAGGGAATG
1 TTTCAAGG--TCGAA-A-A--GAATA
104554 TTTCAAGGTCGAAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
104574 TTTCAAGGTC
1 TTTCAAGGTC
104584 TCAAAGAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 8 0.18
20 14 0.32
21 1 0.02
22 2 0.05
23 2 0.05
24 5 0.11
26 12 0.27
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (20 bp):
TTTCAAGGTCGAAAAGAATA
Found at i:104597 original size:26 final size:25
Alignment explanation
Indices: 104520--104598 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
104510 TTCAAGGTGG
104520 AAAGAATATTTCAAGGTCTCAAAGA
1 AAAGAATATTTCAAGGTCTCAAAGA
** *
104545 GAGGGAATGTTTCAAGG--TC---GA
1 -AAAGAATATTTCAAGGTCTCAAAGA
104566 AAAGAATATTTCAAGGTCTCAAAGA
1 AAAGAATATTTCAAGGTCTCAAAGA
104591 AATAGAAT
1 AA-AGAAT
104599 GTCAAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
20 13 0.32
21 2 0.05
22 2 0.05
24 2 0.05
25 4 0.10
26 18 0.44
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAGAATATTTCAAGGTCTCAAAGA
Found at i:104599 original size:46 final size:45
Alignment explanation
Indices: 104505--104600 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 45
104495 AAATAAATGC
* * *
104505 AATGTTTCAAGGTGGAAAGAATATTTCAAGGTCTCAAAGAGAGGG
1 AATGTTTCAAGGTGAAAAGAATATTTCAAGGTCTCAAAGAAAGAG
*
104550 AATGTTTCAAGGTCGAAAAGAATATTTCAAGGTCTCAAAGAAATAG
1 AATGTTTCAAGGT-GAAAAGAATATTTCAAGGTCTCAAAGAAAGAG
104596 AATGT
1 AATGT
104601 CAAAAATTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 13 0.28
46 33 0.72
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (45 bp):
AATGTTTCAAGGTGAAAAGAATATTTCAAGGTCTCAAAGAAAGAG
Found at i:107081 original size:31 final size:32
Alignment explanation
Indices: 107027--107088 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
107017 TGACAAAATG
107027 ACACAAACAAAAGAGAAAAAATAAGTTAGTAT
1 ACACAAACAAAAGAGAAAAAATAAGTTAGTAT
107059 ACACAAACAAAAGAG-AAAAATAAGTTAGTA
1 ACACAAACAAAAGAGAAAAAATAAGTTAGTA
107089 CATGTAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 15 0.50
32 15 0.50
ACGTcount: A:0.63, C:0.10, G:0.13, T:0.15
Consensus pattern (32 bp):
ACACAAACAAAAGAGAAAAAATAAGTTAGTAT
Found at i:108805 original size:18 final size:19
Alignment explanation
Indices: 108770--108809 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
108760 ATTTAAAAAT
*
108770 TAAATTAATATGAATGAAA
1 TAAAATAATATGAATGAAA
108789 TAAAATAATAT-AATGAAA
1 TAAAATAATATGAATGAAA
108807 TAA
1 TAA
108810 GCAATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
TAAAATAATATGAATGAAA
Found at i:108965 original size:16 final size:16
Alignment explanation
Indices: 108946--108980 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
108936 TTTAAAAAAC
* *
108946 AAAAGGACTAAATTAT
1 AAAAGGACAAAATGAT
108962 AAAAGGACAAAATGAT
1 AAAAGGACAAAATGAT
108978 AAA
1 AAA
108981 GCATAATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.14, T:0.17
Consensus pattern (16 bp):
AAAAGGACAAAATGAT
Found at i:110512 original size:3 final size:3
Alignment explanation
Indices: 110504--110544 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
110494 TTATATAATA
110504 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
110545 CATTTATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:112669 original size:13 final size:13
Alignment explanation
Indices: 112630--112669 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
112620 ATTAACACCT
112630 TTTGCATCTGCATA
1 TTTGCAT-TGCATA
* *
112644 TTTGTATTTCATA
1 TTTGCATTGCATA
112657 TTTGCATTGCATA
1 TTTGCATTGCATA
112670 AATTTAAGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50
Consensus pattern (13 bp):
TTTGCATTGCATA
Found at i:115696 original size:30 final size:31
Alignment explanation
Indices: 115661--115722 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
115651 TATCACCATT
*
115661 AAACCAAGACACATAA-CCTTATCATCTTCC
1 AAACCAAGACACATAACCCTTAGCATCTTCC
*
115691 AAACCAAGACACCTAACCCTTAGCATCTTCC
1 AAACCAAGACACATAACCCTTAGCATCTTCC
115722 A
1 A
115723 TAAGTCAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.39, C:0.35, G:0.05, T:0.21
Consensus pattern (31 bp):
AAACCAAGACACATAACCCTTAGCATCTTCC
Found at i:116158 original size:29 final size:30
Alignment explanation
Indices: 116072--116158 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 30
116062 GCCAAAATGT
**
116072 AACTTTTAAAATTACCATTTTGGTC-CCTA
1 AACTTTTAAAATTTTCATTTTGGTCACCTA
* *
116101 AACTTTTCCAAAGTTTAT-ACTTTGGTCACC-A
1 AACTTTT--AAAATTT-TCATTTTGGTCACCTA
116132 AACTTTTAAAATTTTCATTTTGGTCAC
1 AACTTTTAAAATTTTCATTTTGGTCAC
116159 TATCTAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
28 1 0.02
29 23 0.49
31 21 0.45
32 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (30 bp):
AACTTTTAAAATTTTCATTTTGGTCACCTA
Found at i:117765 original size:99 final size:99
Alignment explanation
Indices: 117592--117774 Score: 215
Period size: 99 Copynumber: 1.8 Consensus size: 99
117582 GATAATTATG
* * * * * *
117592 TATATATAATAAAACTGAGCTATTCTTCTAAAGCAATTGGTGAAAATCCCTAGCTATATGGATAT
1 TATATATAATAAAACTGAGCTATTCCTCTAAAGCAACTGGTGAAAAGCCCTAGCTATATGAAGAG
**
117657 ATTTCTTCAAATAACCAAATAAAGACAAATAATA
66 ATCCCTTCAAATAACCAAATAAAGACAAATAATA
* * * * *
117691 TATATATAATAAATCTGAGCTATTCCTCTAAAGTAACTGGTTAAAAGCCCTGGCTTTATGAAGAG
1 TATATATAATAAAACTGAGCTATTCCTCTAAAGCAACTGGTGAAAAGCCCTAGCTATATGAAGAG
* *
117756 A-CCCATTCAACTAGCCAAA
66 ATCCC-TTCAAATAACCAAA
117775 CAAGGGTAAA
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
98 1 0.01
99 67 0.99
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (99 bp):
TATATATAATAAAACTGAGCTATTCCTCTAAAGCAACTGGTGAAAAGCCCTAGCTATATGAAGAG
ATCCCTTCAAATAACCAAATAAAGACAAATAATA
Found at i:118315 original size:25 final size:24
Alignment explanation
Indices: 118281--118372 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 24
118271 TTTTCGAAAC
*
118281 TTCATCAAACATTGTTCAAAATTCT
1 TTCATAAAACATT-TTCAAAATTCT
* *
118306 TTCATAAAACATTTCTCATAATTTT
1 TTCATAAAACATTT-TCAAAATTCT
*
118331 TTCATTAAACATTTTTCAAAATTCT
1 TTCATAAAACA-TTTTCAAAATTCT
118356 TTCATAAAACATTTTCA
1 TTCATAAAACATTTTCA
118373 GACAAGACAA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.12
25 48 0.83
26 3 0.05
ACGTcount: A:0.37, C:0.17, G:0.01, T:0.45
Consensus pattern (24 bp):
TTCATAAAACATTTTCAAAATTCT
Found at i:122159 original size:34 final size:32
Alignment explanation
Indices: 122106--122175 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
122096 CCTTACAAAC
*
122106 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
*
122138 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACCTT
122172 TCCC
1 TCCC
122176 CTTTACAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 22 0.65
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
Done.