Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001896.1 Hibiscus syriacus cultivar Beakdansim tig00003842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131627
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:7728 original size:58 final size:60
Alignment explanation
Indices: 7658--7775 Score: 168
Period size: 58 Copynumber: 2.0 Consensus size: 60
7648 GGAGAAGGGC
* * *
7658 GAGAACACGAAGAGGGCGAGGAAGAATT-GGGGAAATAAGACGAGGG-TAGGGATTGAGA
1 GAGAACACGAAGAGAGCAAGGAAGAATTGGGGGAAATAAGACGAGGGTTAAGGATTGAGA
* * *
7716 GAGAACACGAAGAGAGTAAGGGAGAATTGGGGGAAATGAGACGAGGGTTAAGGATTGAGA
1 GAGAACACGAAGAGAGCAAGGAAGAATTGGGGGAAATAAGACGAGGGTTAAGGATTGAGA
7776 ATAAGGATTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
58 24 0.46
59 17 0.33
60 11 0.21
ACGTcount: A:0.40, C:0.06, G:0.42, T:0.12
Consensus pattern (60 bp):
GAGAACACGAAGAGAGCAAGGAAGAATTGGGGGAAATAAGACGAGGGTTAAGGATTGAGA
Found at i:10903 original size:2 final size:2
Alignment explanation
Indices: 10896--10922 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10886 CCATTTTAAA
10896 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
10923 GTTATTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14797 original size:18 final size:18
Alignment explanation
Indices: 14779--14811 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14769 TAAAGTAATT
14779 TTTTA-ATAT-ATTATTA
1 TTTTATATATGATTATTA
14795 TTTTATATATGATTATT
1 TTTTATATATGATTATT
14812 TGAAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTATATATGATTATTA
Found at i:14804 original size:15 final size:16
Alignment explanation
Indices: 14779--14812 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
14769 TAAAGTAATT
*
14779 TTTTAATATATTATTA
1 TTTTAATATATGATTA
14795 TTTT-ATATATGATTA
1 TTTTAATATATGATTA
14810 TTT
1 TTT
14813 GAAGAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTTAATATATGATTA
Found at i:16840 original size:21 final size:21
Alignment explanation
Indices: 16787--16840 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
16777 GTAAAACTAA
16787 AATTT-AGTTAATTAGTTTGTT
1 AATTTAAGTT-ATTAGTTTGTT
* * *
16808 AGTATAAATTATTAGTTTGTT
1 AATTTAAGTTATTAGTTTGTT
16829 AATTTAAGTTAT
1 AATTTAAGTTAT
16841 ATTATATTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (21 bp):
AATTTAAGTTATTAGTTTGTT
Found at i:16841 original size:28 final size:28
Alignment explanation
Indices: 16810--16875 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
16800 AGTTTGTTAG
16810 TATAAATTATTAGTTTGTTAATTTAAGT
1 TATAAATTATTAGTTTGTTAATTTAAGT
* *
16838 TAT-ATTATATTAGTTTGTTAGTTTAAGT
1 TATAAAT-TATTAGTTTGTTAATTTAAGT
*
16866 TATATATTAT
1 TATAAATTAT
16876 ATTATATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.06
28 29 0.91
29 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (28 bp):
TATAAATTATTAGTTTGTTAATTTAAGT
Found at i:20620 original size:49 final size:49
Alignment explanation
Indices: 20502--20776 Score: 378
Period size: 49 Copynumber: 5.6 Consensus size: 49
20492 TTTGATTTAG
* * * *
20502 TAATGATTTGGTAATTATGATT--TAATAATGAATTTA-TATTTAATATTAT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTA-TTAATA-T-T
20551 AATAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 --TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
* * *
20602 TAATGATTTGATACTAATGACTAGTAATAATAAAATTATTATTAATATT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
20651 TAATGATTTGATAGTAATGATTAGTAATAATG-AATTATTATTAATATT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
*
20699 TAAAGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
* * *
20748 TAATGGTTTGATAGTAATTATTATTAATA
1 TAATGATTTGATAGTAATGATTAGTAATA
20777 TTTAATGATT
Statistics
Matches: 205, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
48 47 0.23
49 116 0.57
51 20 0.10
52 1 0.00
53 19 0.09
54 2 0.01
ACGTcount: A:0.43, C:0.01, G:0.11, T:0.45
Consensus pattern (49 bp):
TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
Found at i:20718 original size:97 final size:98
Alignment explanation
Indices: 20553--20776 Score: 378
Period size: 97 Copynumber: 2.3 Consensus size: 98
20543 AATATTATAA
*
20553 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATACTA
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAAGATTTGATACTA
20618 ATGACTAGTAATAATAAAATTATTATTAATATT
66 ATGACTAGTAATAATAAAATTATTATTAATATT
*
20651 TAATGATTTGATAGTAATGATTAGTAATAATG-AATTATTATTAATATTTAAAGATTTGATAGTA
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAAGATTTGATACTA
* *
20715 ATGATTAGTAATAATGAAATTATTATTAATATT
66 ATGACTAGTAATAATAAAATTATTATTAATATT
* * *
20748 TAATGGTTTGATAGTAATTATTATTAATA
1 TAATGATTTGATAGTAATGATTAGTAATA
20777 TTTAATGATT
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
97 87 0.73
98 32 0.27
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.45
Consensus pattern (98 bp):
TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAAAGATTTGATACTA
ATGACTAGTAATAATAAAATTATTATTAATATT
Found at i:20770 original size:31 final size:31
Alignment explanation
Indices: 20732--20806 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
20722 GTAATAATGA
*
20732 AATTATTATTAATATTTAATGGTTTGATAGT
1 AATTATTATTAATATTTAATGATTTGATAGT
20763 AATTATTATTAATATTTAATGATTTGATAGT
1 AATTATTATTAATATTTAATGATTTGATAGT
*
20794 AATTATTAGTAAT
1 AATTATTATTAAT
20807 TATTAGTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.51
Consensus pattern (31 bp):
AATTATTATTAATATTTAATGATTTGATAGT
Found at i:20805 original size:10 final size:10
Alignment explanation
Indices: 20790--20821 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
20780 AATGATTTGA
20790 TAGTAATTAT
1 TAGTAATTAT
20800 TAGTAATTAT
1 TAGTAATTAT
*
20810 TAGTAATAAT
1 TAGTAATTAT
20820 TA
1 TA
20822 AATAATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (10 bp):
TAGTAATTAT
Found at i:21044 original size:12 final size:11
Alignment explanation
Indices: 21013--21047 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
21003 TAACCATAAA
21013 AATAATTTAAT
1 AATAATTTAAT
21024 AATAATTTAAT
1 AATAATTTAAT
21035 AATGAATTTAAT
1 AAT-AATTTAAT
21047 A
1 A
21048 TTTAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (11 bp):
AATAATTTAAT
Found at i:21107 original size:26 final size:26
Alignment explanation
Indices: 21073--21380 Score: 286
Period size: 26 Copynumber: 12.3 Consensus size: 26
21063 GTTTAGTATG
* * *
21073 ATAACAATCATTATAGTAATGATTTG
1 ATAATAATCATTATAATAATGATTTA
21099 ATAATAATCATTATAATAATGATTTA
1 ATAATAATCATTATAATAATGATTTA
* *
21125 GTAATAATCATTATAATAATAATTTA
1 ATAATAATCATTATAATAATGATTTA
* *
21151 ATAAT-A-C-TTTTTA-AAT-ATTTA
1 ATAATAATCATTATAATAATGATTTA
* * * * *
21172 ATGATTTGATGATT-TAGTAATGATTTG
1 AT-A-ATAATCATTATAATAATGATTTA
*
21199 ATAATAATTATTATAATAATGATTTA
1 ATAATAATCATTATAATAATGATTTA
*
21225 GTAATAATCATTATAATAATGATTTA
1 ATAATAATCATTATAATAATGATTTA
21251 ATAAT-A--A-TATAATAATGATTTA
1 ATAATAATCATTATAATAATGATTTA
21273 ATAATAATCATTATAATAATGATTTA
1 ATAATAATCATTATAATAATGATTTA
*
21299 ATAGA-AATTATT-TAATAATGATTTA
1 ATA-ATAATCATTATAATAATGATTTA
* * *
21324 GTAATGAT-TTTATAATAATGATTTA
1 ATAATAATCATTATAATAATGATTTA
* * *
21349 ATACTAATGATT-TAATAATTA-TTA
1 ATAATAATCATTATAATAATGATTTA
*
21373 CTAATAAT
1 ATAATAAT
21381 TATAGAATAA
Statistics
Matches: 234, Mismatches: 32, Indels: 34
0.78 0.11 0.11
Matches are distributed among these distances:
21 7 0.03
22 24 0.10
23 7 0.03
24 14 0.06
25 53 0.23
26 122 0.52
27 7 0.03
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (26 bp):
ATAATAATCATTATAATAATGATTTA
Found at i:21195 original size:100 final size:100
Alignment explanation
Indices: 21073--21356 Score: 364
Period size: 100 Copynumber: 2.9 Consensus size: 100
21063 GTTTAGTATG
* *
21073 ATAACAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTA
1 ATAATAATCATTATAGTAATGATTTGATAATAATTATTATAATAATGATTTAGTAATAATCATTA
* * **
21138 TAATAATAATTTAATAATACT-TTTTAAAT-ATTTA
66 TAATAATGATTTAATAATAATATAAT-AATGATTTA
* * *
21172 ATGATTTGATGATT-TAGTAATGATTTGATAATAATTATTATAATAATGATTTAGTAATAATCAT
1 AT-A-ATAATCATTATAGTAATGATTTGATAATAATTATTATAATAATGATTTAGTAATAATCAT
21236 TATAATAATGATTTAATAATAATATAATAATGATTTA
64 TATAATAATGATTTAATAATAATATAATAATGATTTA
* * * *
21273 ATAATAATCATTATAATAATGATTTAATAGA-AATTATT-TAATAATGATTTAGTAATGAT-TTT
1 ATAATAATCATTATAGTAATGATTTGATA-ATAATTATTATAATAATGATTTAGTAATAATCATT
*
21335 ATAATAATGATTTAATACTAAT
65 ATAATAATGATTTAATAATAAT
21357 GATTTAATAA
Statistics
Matches: 162, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
98 23 0.14
99 28 0.17
100 96 0.59
101 15 0.09
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (100 bp):
ATAATAATCATTATAGTAATGATTTGATAATAATTATTATAATAATGATTTAGTAATAATCATTA
TAATAATGATTTAATAATAATATAATAATGATTTA
Found at i:21350 original size:11 final size:11
Alignment explanation
Indices: 21180--21367 Score: 115
Period size: 14 Copynumber: 15.2 Consensus size: 11
21170 TAATGATTTG
*
21180 ATGATTTAGTA
1 ATGATTTAATA
21191 ATGATTTGATAATA
1 ATGA-TT--TAATA
*
21205 ATTATTATAATA
1 ATGATT-TAATA
21217 ATGATTTAGTAATA
1 ATGA-TT--TAATA
*
21231 ATCATTATAATA
1 ATGATT-TAATA
21243 ATGATTTAATA
1 ATGATTTAATA
* *
21254 ATAATATAATA
1 ATGATTTAATA
21265 ATGATTTAATAATA
1 ATGA-TT--TAATA
*
21279 ATCATTATAATA
1 ATGATT-TAATA
21291 ATGATTTAATAGAA
1 ATGATTTAAT---A
*
21305 ATTATTTAATA
1 ATGATTTAATA
*
21316 ATGATTTAGTA
1 ATGATTTAATA
21327 ATGATTTTATAATA
1 ATGA--TT-TAATA
21341 ATGATTTAATACTA
1 ATGATTT-A-A-TA
21355 ATGATTTAATA
1 ATGATTTAATA
21366 AT
1 AT
21368 TATTACTAAT
Statistics
Matches: 143, Mismatches: 17, Indels: 34
0.74 0.09 0.18
Matches are distributed among these distances:
11 44 0.31
12 37 0.26
13 12 0.08
14 50 0.35
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (11 bp):
ATGATTTAATA
Found at i:23294 original size:17 final size:15
Alignment explanation
Indices: 23263--23297 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
23253 ACAAAAAAAT
23263 TAATATAATAACTTA
1 TAATATAATAACTTA
23278 TAATATAAATAAACTTA
1 TAATAT-AAT-AACTTA
23295 TAA
1 TAA
23298 AGTAAACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 3 0.17
17 9 0.50
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (15 bp):
TAATATAATAACTTA
Found at i:23778 original size:25 final size:25
Alignment explanation
Indices: 23750--23806 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
23740 TTATTTCTTT
* *
23750 CTTTCTCGGCTGCACTATTTTCTCC
1 CTTTCTCGGCTGCAATATCTTCTCC
* *
23775 CTTTCTTTGGCTGCAATCTCTTCTCC
1 CTTTC-TCGGCTGCAATATCTTCTCC
23801 CTTTCT
1 CTTTCT
23807 TTCTTTTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.07, C:0.35, G:0.11, T:0.47
Consensus pattern (25 bp):
CTTTCTCGGCTGCAATATCTTCTCC
Found at i:24031 original size:27 final size:27
Alignment explanation
Indices: 23979--24031 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
23969 GCTGCAGCGA
* *
23979 CATGTAGCGGGGAGCAGAAGGGGACGG
1 CATGCAGCGGGGAGCAGAAGGAGACGG
24006 CATGCAGCGGGGAGCA-AGAGGAGACG
1 CATGCAGCGGGGAGCAGA-AGGAGACG
24032 TGCAGAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.28, C:0.17, G:0.49, T:0.06
Consensus pattern (27 bp):
CATGCAGCGGGGAGCAGAAGGAGACGG
Found at i:28056 original size:15 final size:15
Alignment explanation
Indices: 28036--28064 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
28026 CTTAACTCTG
28036 TTGTGTCGTATCGTA
1 TTGTGTCGTATCGTA
28051 TTGTGTCGTATCGT
1 TTGTGTCGTATCGT
28065 GTGATTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.14, G:0.28, T:0.48
Consensus pattern (15 bp):
TTGTGTCGTATCGTA
Found at i:28582 original size:134 final size:129
Alignment explanation
Indices: 28428--28686 Score: 367
Period size: 134 Copynumber: 2.0 Consensus size: 129
28418 GTAAAAAAGG
* *
28428 TATTTTGTGATATTTAAAGTTATTAAATATAATTATATTATATTATGAATAATATAATATGAATT
1 TATTTTGTGATATTTAAAGTTATTAAATATAATTATATTATATTAT--AT--TATAATATAAATA
* *
28493 ATTAGTTAACAAAAT-ACATACTTTGATTAAATATAATATATATTATAATATATAATCAAATGTT
62 ATTAGTTAACAAAATCACATAC-TTGATTAAAGAT-AGATATATTATAATATATAATCAAATGTT
28557 ATTAA
125 ATTAA
* * *
28562 TATTTTGTGATATTTAAAGTTGTTAAATATAATTATATTATGTTATATTATATTATAAATAATTA
1 TATTTTGTGATATTTAAAGTTATTAAATATAATTATATTATATTATATTATAATATAAATAATTA
* * *
28627 GTTAACAAAATCACATACTTGATTACAGATAGATATATTATAATATATGATCGAATGTTA
66 GTTAACAAAATCACATACTTGATTAAAGATAGATATATTATAATATATAATCAAATGTTA
28687 AACTTTCAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
129 27 0.24
130 35 0.31
131 6 0.05
132 2 0.02
134 44 0.39
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (129 bp):
TATTTTGTGATATTTAAAGTTATTAAATATAATTATATTATATTATATTATAATATAAATAATTA
GTTAACAAAATCACATACTTGATTAAAGATAGATATATTATAATATATAATCAAATGTTATTAA
Found at i:28715 original size:134 final size:131
Alignment explanation
Indices: 28437--28686 Score: 319
Period size: 130 Copynumber: 1.9 Consensus size: 131
28427 GTATTTTGTG
* *
28437 ATATTTAAAGTTATTAAATATAATTATATTATATTATGAATAATATAATATGAATTATTAGTTAA
1 ATATTTAAAGTTATTAAATATAATTATATTATATTAT-AAT-ATATAATATAAATAATTAGTTAA
* * *
28502 CAAAATACATACTTTGATTAAATATAATATATATTATAATATATAATCAAATGTTATTAATATTT
64 CAAAATACATACTTTGATTAAAGATAAGATATATTATAATATATAATCAAATGTTA-TAATATTA
**
28567 TGTG
128 TGAC
* * *
28571 ATATTTAAAGTTGTTAAATATAATTATATTATGTTAT-AT-TATATTATAAATAATTAGTTAACA
1 ATATTTAAAGTTATTAAATATAATTATATTATATTATAATATATAATATAAATAATTAGTTAACA
* * *
28634 AAATCACATAC-TTGATTACAGAT-AGATATATTATAATATATGATCGAATGTTA
66 AAAT-ACATACTTTGATTAAAGATAAGATATATTATAATATATAATCAAATGTTA
28687 AACTTTCAAA
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
129 27 0.26
130 35 0.33
131 6 0.06
132 2 0.02
134 35 0.33
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (131 bp):
ATATTTAAAGTTATTAAATATAATTATATTATATTATAATATATAATATAAATAATTAGTTAACA
AAATACATACTTTGATTAAAGATAAGATATATTATAATATATAATCAAATGTTATAATATTATGA
C
Found at i:33277 original size:60 final size:60
Alignment explanation
Indices: 33148--33263 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
33138 GAAAGAATGA
* * * * * *
33148 CATAGTTTAGGGATGAAATTAGAATGTTCAAAATTTTAAGGACTAATTTAAAATGAAAAT
1 CATAATTTAGGAATGAAATTAGAATATTCAAAAATTTAAGGACCAACTTAAAATGAAAAT
* *
33208 CATAATTTAGGAATGAAATTATAATATTTAAAAATTTAAGGACCAACTTAAAATGA
1 CATAATTTAGGAATGAAATTAGAATATTCAAAAATTTAAGGACCAACTTAAAATGA
33264 GGACTATAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (60 bp):
CATAATTTAGGAATGAAATTAGAATATTCAAAAATTTAAGGACCAACTTAAAATGAAAAT
Found at i:34539 original size:60 final size:61
Alignment explanation
Indices: 34451--34590 Score: 151
Period size: 60 Copynumber: 2.3 Consensus size: 61
34441 TTAGGGATTG
* * * * *
34451 ATTTAGAATGAGAGTCATA-ATTTAGGGAT-AAAATTAGAATGTTTAAAAGTTGAAGGACTA
1 ATTTAGAATGAGAGTCATAGATCTAGGGATGAAAATTA-AATATTAAAAAATTGAAGAACTA
* * * *
34511 ATTTAGAACGAGAGTCATAGCTCT-GGGATGAAATTTAAATATTAAAAAATTTAAGAACTA
1 ATTTAGAATGAGAGTCATAGATCTAGGGATGAAAATTAAATATTAAAAAATTGAAGAACTA
* *
34571 ATTTAAAATGAGAGTTATAG
1 ATTTAGAATGAGAGTCATAG
34591 TTTGAGGACA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
60 58 0.88
61 8 0.12
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.31
Consensus pattern (61 bp):
ATTTAGAATGAGAGTCATAGATCTAGGGATGAAAATTAAATATTAAAAAATTGAAGAACTA
Found at i:35325 original size:16 final size:16
Alignment explanation
Indices: 35294--35328 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
35284 GTAATTTAAC
35294 TAAAATATAATATTTA
1 TAAAATATAATATTTA
* *
35310 TAAAATATTATTTTTA
1 TAAAATATAATATTTA
35326 TAA
1 TAA
35329 TGTTACTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAAATATAATATTTA
Found at i:43204 original size:3 final size:3
Alignment explanation
Indices: 43196--43231 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
43186 TAGAAAAAGT
* *
43196 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
43232 CGGGTATCTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:43856 original size:17 final size:19
Alignment explanation
Indices: 43819--43856 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
43809 GTTATATGTG
43819 AATATGTATATTATGAATA
1 AATATGTATATTATGAATA
*
43838 AATAT-TATCTTAT-AATA
1 AATATGTATATTATGAATA
43855 AA
1 AA
43857 CTCAAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 7 0.39
19 5 0.28
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
AATATGTATATTATGAATA
Found at i:43915 original size:43 final size:43
Alignment explanation
Indices: 43865--43951 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
43855 AACTCAAACT
43865 ATTCACAAAATATATAATAACAATAATAATAATAAAGTTTATA
1 ATTCACAAAATATATAATAACAATAATAATAATAAAGTTTATA
43908 ATTCACAAAATATATAATAACAATAATAATAATAAAGTTTATA
1 ATTCACAAAATATATAATAACAATAATAATAATAAAGTTTATA
43951 A
1 A
43952 CAAATGATGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (43 bp):
ATTCACAAAATATATAATAACAATAATAATAATAAAGTTTATA
Found at i:44084 original size:6 final size:6
Alignment explanation
Indices: 44073--44102 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
44063 GCACACGTCT
44073 CCATCC CCATCC CCAT-C CCATCC CCATCC C
1 CCATCC CCATCC CCATCC CCATCC CCATCC C
44103 TTTTCTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
CCATCC
Found at i:44094 original size:11 final size:11
Alignment explanation
Indices: 44073--44102 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
44063 GCACACGTCT
44073 CCATCCCCATCC
1 CCAT-CCCATCC
44085 CCATCCCATCC
1 CCATCCCATCC
44096 CCATCCC
1 CCATCCC
44103 TTTTCTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (11 bp):
CCATCCCATCC
Found at i:48988 original size:21 final size:22
Alignment explanation
Indices: 48962--49004 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
48952 TTGAATTTTT
48962 AATT-AAA-ATTTGTAACAAAAA
1 AATTAAAATATTTGTAA-AAAAA
48983 AATTAAAATATTTGTAAAAAAA
1 AATTAAAATATTTGTAAAAAAA
49005 TTGTAAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 8 0.40
23 8 0.40
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (22 bp):
AATTAAAATATTTGTAAAAAAA
Found at i:49569 original size:183 final size:183
Alignment explanation
Indices: 49259--49619 Score: 643
Period size: 183 Copynumber: 2.0 Consensus size: 183
49249 AAATAGACAA
*
49259 GTACATAACTAAAAGCAACATGAAAATAGGCATTATCCAACGTGCATCAACAAACTCCTATTAAC
1 GTACATAACTAAAAGCAACATGAAAATAGGCACTATCCAACGTGCATCAACAAACTCCTATTAAC
* *
49324 TAGGAAACAAATTTAAACAAACTACTGAACTCCTAAAGACTAGGACAACCCAAATTCTTTCTTAC
66 TAGGAAACAAATTAAAACAAACTACTGAACTCCTAAAGACTAGGACAACCCAAATCCTTTCTTAC
*
49389 GTGTGCTGCTACTAATTTATTTAACAATCCCTCTCTTAAACTGATGTTATGTG
131 GTGTACTGCTACTAATTTATTTAACAATCCCTCTCTTAAACTGATGTTATGTG
*
49442 GTACATAACTGAAAGCAACATGAAAATAGGCACTATCCAACGTGCATCAACAAACTCCTATTAAC
1 GTACATAACTAAAAGCAACATGAAAATAGGCACTATCCAACGTGCATCAACAAACTCCTATTAAC
*
49507 TAGGAAACAAATTAAAACAAACTACTGAACTCCTAAAGACTAGGA-ACACTCAAATCCTTTCTTA
66 TAGGAAACAAATTAAAACAAACTACTGAACTCCTAAAGACTAGGACA-ACCCAAATCCTTTCTTA
*
49571 CGTGTACTGCTACTAATTTTTTTAACAATCCCTCTCTTAAACTGATGTT
130 CGTGTACTGCTACTAATTTATTTAACAATCCCTCTCTTAAACTGATGTT
49620 CCACACTTAA
Statistics
Matches: 170, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
182 1 0.01
183 169 0.99
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (183 bp):
GTACATAACTAAAAGCAACATGAAAATAGGCACTATCCAACGTGCATCAACAAACTCCTATTAAC
TAGGAAACAAATTAAAACAAACTACTGAACTCCTAAAGACTAGGACAACCCAAATCCTTTCTTAC
GTGTACTGCTACTAATTTATTTAACAATCCCTCTCTTAAACTGATGTTATGTG
Found at i:57548 original size:14 final size:15
Alignment explanation
Indices: 57529--57558 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
57519 GGGCTTTGTA
57529 ATTTAATAT-TATTT
1 ATTTAATATATATTT
57543 ATTTAATATATATTT
1 ATTTAATATATATTT
57558 A
1 A
57559 ATAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTAATATATATTT
Found at i:57565 original size:3 final size:3
Alignment explanation
Indices: 57557--57609 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
57547 AATATATATT
* * *
57557 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TTA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
57605 TAA TA
1 TAA TA
57610 TGGGTAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:58063 original size:116 final size:114
Alignment explanation
Indices: 57926--58480 Score: 809
Period size: 116 Copynumber: 4.9 Consensus size: 114
57916 GATAGAATTA
* *
57926 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
*** * * *
57991 GAACTCTTC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAG
63 GAACTCTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAACAAAAGG
* *
58042 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTTATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
*
58107 GAAC-CTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAGACAAAAGG
63 GAACTCTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAACAAAAGG
58158 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * * *
58223 CT-TTTTCTGG-AAAAGCTAATCCATCAATTTGATGAATTCAAATAAAAGG
66 CTCTTCTCTGGCAAAA-ATAATCCATCAA-GTGATGAATTCAAACAAAAGG
*
58272 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCACTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
*
58337 --CTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAATAAAAGG
66 CTCTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAACAAAAGG
58384 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
58449 CT-TTCTCTAGAAAAAATAATCCATCAAATGAT
66 CTCTTCTCTGGCAAAAATAATCCATCAAGTGAT
58481 AGATTTGAAT
Statistics
Matches: 407, Mismatches: 24, Indels: 19
0.90 0.05 0.04
Matches are distributed among these distances:
112 88 0.22
113 82 0.20
114 86 0.21
115 4 0.01
116 147 0.36
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (114 bp):
TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
CTCTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAACAAAAGG
Found at i:58400 original size:226 final size:227
Alignment explanation
Indices: 57926--58480 Score: 862
Period size: 226 Copynumber: 2.4 Consensus size: 227
57916 GATAGAATTA
* *
57926 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
* * * * * * *
57991 GAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAGTTCTT
63 GAACTTTTTCTGGAAAAGATAATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTT
* *
58056 CTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTTATTATGAACCTTCTCTGGC
128 CTCATTATGAACTTCTTCTTCCTTCTTCAGAT-A-GAGTTCTTCTCACTATGAACCTTCTCTGGC
*
58121 AAAAATAATCCATCAAGTGATGAATTCAGACAAAAGG
191 AAAAATAATCCATCAAGTGATGAATTCAAACAAAAGG
58158 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * * *
58223 CTTTTTCTGGAAAAGCTAATCCATCAATTTGATGAATTCAAATAAAAGGTTGAACAAATTCTTCT
66 CTTTTTCTGGAAAAGATAATCCATCAA-ATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCT
58288 CATTATGAACTTCTTCTTCCTTCTTCAGAT-GAGTTCTTCTCACTATGAA-CTTCTCTGGCAAAA
130 CATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCTCACTATGAACCTTCTCTGGCAAAA
*
58351 ATAATCCATCAAGTGATGAATTCAAATAAAAGG
195 ATAATCCATCAAGTGATGAATTCAAACAAAAGG
58384 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
58449 CTTTCTCTAGAAAAAATAATCCATCAAATGAT
66 CTTTTTCTGGAAAAGATAATCCATCAAATGAT
58481 AGATTTGAAT
Statistics
Matches: 301, Mismatches: 21, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
225 4 0.01
226 133 0.44
227 17 0.06
229 40 0.13
230 63 0.21
232 44 0.15
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (227 bp):
TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
CTTTTTCTGGAAAAGATAATCCATCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTC
ATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCTCACTATGAACCTTCTCTGGCAAAAA
TAATCCATCAAGTGATGAATTCAAACAAAAGG
Found at i:59348 original size:83 final size:83
Alignment explanation
Indices: 59209--59789 Score: 1099
Period size: 83 Copynumber: 7.0 Consensus size: 83
59199 GTAGTTCCTA
* *
59209 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
59274 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
*
59292 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
59357 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
59375 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
59440 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
*
59458 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTTATCTTCCAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
*
59523 ATTCATTGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
59541 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
59606 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
*
59624 CCAAATCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
59689 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
*
59707 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
59772 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
59790 AGATATCACA
Statistics
Matches: 489, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 489 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (83 bp):
CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCAA
ATTCAATGATTGGTTCTG
Found at i:60941 original size:9 final size:9
Alignment explanation
Indices: 60909--60942 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
60899 TTGACCCCCC
60909 TTTTTTCTT
1 TTTTTTCTT
*
60918 TTTTCTCTTT
1 TTTTTTC-TT
60928 TTTTTTCTT
1 TTTTTTCTT
60937 TTTTTT
1 TTTTTT
60943 TTCTTCAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:60942 original size:10 final size:10
Alignment explanation
Indices: 60909--60943 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
60899 TTGACCCCCC
60909 TTTTTTC-TT
1 TTTTTTCTTT
*
60918 TTTTCTCTTT
1 TTTTTTCTTT
60928 TTTTTTCTTT
1 TTTTTTCTTT
60938 TTTTTT
1 TTTTTT
60944 TCTTCAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.26
10 17 0.74
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:60944 original size:11 final size:11
Alignment explanation
Indices: 60911--60947 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
60901 GACCCCCCTT
60911 TTTTCTTTTTTC
1 TTTT-TTTTTTC
60923 TCTTTTTTTTTC
1 T-TTTTTTTTTC
60935 TTTTTTTTTTC
1 TTTTTTTTTTC
60946 TT
1 TT
60948 CAAGCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 12 0.50
12 9 0.38
13 3 0.12
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:71162 original size:16 final size:15
Alignment explanation
Indices: 71141--71172 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
71131 CTGTTCTCTG
71141 TCTTCTTTCTTTTTCC
1 TCTTCTTT-TTTTTCC
71157 TCTTCTTTTTTTTCC
1 TCTTCTTTTTTTTCC
71172 T
1 T
71173 TTCAGGTTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (15 bp):
TCTTCTTTTTTTTCC
Found at i:71593 original size:14 final size:15
Alignment explanation
Indices: 71574--71603 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
71564 GGGCTTTGTA
71574 ATTTAATAT-TATTT
1 ATTTAATATATATTT
71588 ATTTAATATATATTT
1 ATTTAATATATATTT
71603 A
1 A
71604 ATAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTAATATATATTT
Found at i:71610 original size:3 final size:3
Alignment explanation
Indices: 71602--71684 Score: 139
Period size: 3 Copynumber: 27.7 Consensus size: 3
71592 AATATATATT
* *
71602 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
71650 TAA TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
71685 TGGGTAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:73731 original size:36 final size:33
Alignment explanation
Indices: 73649--73738 Score: 83
Period size: 36 Copynumber: 2.6 Consensus size: 33
73639 GTTAGTATTT
* *
73649 TTTAAATAGTTATTA-TATTTTATATTAATATA
1 TTTATATAATTATTATTATTTTATATTAATATA
** * *
73681 TTTATGCAAATATTATTATTTTTTATTAAAATAATA
1 TTTATATAATTATTATTATTTTATATT--AAT-ATA
73717 TTTATATAATTATTATTTATTT
1 TTTATATAATTATTA-TTATTT
73739 AGAATTATTA
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
32 10 0.23
33 10 0.23
35 3 0.07
36 15 0.34
37 6 0.14
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (33 bp):
TTTATATAATTATTATTATTTTATATTAATATA
Found at i:75535 original size:21 final size:20
Alignment explanation
Indices: 75506--75620 Score: 117
Period size: 21 Copynumber: 5.5 Consensus size: 20
75496 ATGCCATCTT
*
75506 CGCAAGGTTACATTCTGAGCC
1 CGCAGGGTTACATTCT-AGCC
75527 CGCAGGGTTACATTCCTAGCCC
1 CGCAGGGTTACATT-CTAG-CC
*
75549 CGCCA-GGTTACATTCCGAGCC
1 CG-CAGGGTTACATT-CTAGCC
75570 CGCAGGGTTACATTCCTAGCC
1 CGCAGGGTTACATT-CTAGCC
*
75591 CGCCA-GGTTACATGCATAGCC
1 CG-CAGGGTTACATTC-TAGCC
75612 CGCAGGGTT
1 CGCAGGGTT
75621 TTATACCATA
Statistics
Matches: 83, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.06
21 55 0.66
22 21 0.25
23 2 0.02
ACGTcount: A:0.20, C:0.33, G:0.25, T:0.22
Consensus pattern (20 bp):
CGCAGGGTTACATTCTAGCC
Found at i:75558 original size:43 final size:42
Alignment explanation
Indices: 75510--75620 Score: 179
Period size: 43 Copynumber: 2.6 Consensus size: 42
75500 CATCTTCGCA
75510 AGGTTACATTCTGAGCCCGCAGGGTTACATTCCTAGCCCCGCC
1 AGGTTACATTCTGAGCCCGCAGGGTTACATTCCTAG-CCCGCC
*
75553 AGGTTACATTCCGAGCCCGCAGGGTTACATTCCTAGCCCGCC
1 AGGTTACATTCTGAGCCCGCAGGGTTACATTCCTAGCCCGCC
*
75595 AGGTTACATGCAT-AGCCCGCAGGGTT
1 AGGTTACATTC-TGAGCCCGCAGGGTT
75621 TTATACCATA
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.20, C:0.32, G:0.25, T:0.23
Consensus pattern (42 bp):
AGGTTACATTCTGAGCCCGCAGGGTTACATTCCTAGCCCGCC
Found at i:80779 original size:24 final size:24
Alignment explanation
Indices: 80752--80874 Score: 156
Period size: 24 Copynumber: 5.1 Consensus size: 24
80742 TTCAATTTGA
*
80752 ATTCTGATATGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
* *
80776 ATTCTGATATGATATTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
* *
80800 ATTTTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
*
80824 ATTCTGATCTGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* * * *
80848 ATTTTAATCTCATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
80872 ATT
1 ATT
80875 ATGTTTTGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:82923 original size:23 final size:23
Alignment explanation
Indices: 82897--82959 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
82887 ATATAACCAC
82897 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
82920 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
82943 TACCTATTACATCATAT
1 TACCTATTACATTATAT
82960 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:83337 original size:429 final size:429
Alignment explanation
Indices: 82537--83590 Score: 2063
Period size: 429 Copynumber: 2.5 Consensus size: 429
82527 TATTACATTA
82537 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
82602 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
82667 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATT-TTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
82732 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
195 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
82797 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
260 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
82862 TTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
325 TTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
82927 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
82967 TATTATATTGAAAGTGTCCATACTGTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
83032 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTATAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
83097 TTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
131 TTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
83162 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
196 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
83227 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
261 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
83292 TATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
326 TATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
83357 ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
83396 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
83461 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
83526 TTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
131 TTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
83591 CAACATTAAC
Statistics
Matches: 617, Mismatches: 7, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
429 466 0.76
430 151 0.24
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (429 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA
TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
TATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:83352 original size:23 final size:23
Alignment explanation
Indices: 83326--83388 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
83316 ATATAACCAC
83326 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
83349 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
83372 TACCTATTACATCATAT
1 TACCTATTACATTATAT
83389 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:83864 original size:39 final size:39
Alignment explanation
Indices: 83810--83895 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
83800 CAAGTTGTAG
* *
83810 ATTTTGATTTCCTTTTGCTTGGTATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* * *
83849 ATTTTGATTTCCTTTTTCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
83888 ATTTTGAT
1 ATTTTGAT
83896 GAGCATCGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.19, C:0.13, G:0.17, T:0.51
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:84542 original size:23 final size:23
Alignment explanation
Indices: 84516--84578 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
84506 ATATAACCAC
84516 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
84539 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
84562 TACCTATTACATCATAT
1 TACCTATTACATTATAT
84579 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:84980 original size:25 final size:25
Alignment explanation
Indices: 84923--84988 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
84913 CACTCAAAAG
*
84923 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
84948 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
84973 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
84989 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:87975 original size:183 final size:183
Alignment explanation
Indices: 87450--87942 Score: 853
Period size: 183 Copynumber: 2.7 Consensus size: 183
87440 TTAAAATTAC
*
87450 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
87515 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * *
87580 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGAGTAAATGT
* *
87633 CGATACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
87698 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACTGGTACATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
87763 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGAGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGAGTAAATGT
*
87816 CGACACTTTTTAACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTA-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
* *
87880 GATTAAAAAGTGTCGATATAGGTTGTAGACCAATTCGCGCATAAAACCGGTATATTTATACCG
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
87943 ATAGCATTGC
Statistics
Matches: 292, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 289 0.99
184 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGAGTAAATGT
Found at i:89459 original size:12 final size:12
Alignment explanation
Indices: 89446--89546 Score: 103
Period size: 12 Copynumber: 8.4 Consensus size: 12
89436 GTTTGGATCA
* *
89446 TCATCTTCATCA
1 TCATCGTCATCT
* *
89458 TCATCATCATCA
1 TCATCGTCATCT
* *
89470 TCGTCATCATCT
1 TCATCGTCATCT
* * *
89482 TCATTGCCAGCT
1 TCATCGTCATCT
*
89494 TCATCGTCATCA
1 TCATCGTCATCT
89506 TCATCGTCATCT
1 TCATCGTCATCT
89518 TCATCGTCATCT
1 TCATCGTCATCT
*
89530 TCATCGTCAGCT
1 TCATCGTCATCT
89542 TCATC
1 TCATC
89547 TTCTGCGACC
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 75 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.38
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:89549 original size:6 final size:6
Alignment explanation
Indices: 89446--89549 Score: 75
Period size: 6 Copynumber: 17.3 Consensus size: 6
89436 GTTTGGATCA
* * * * * * *
89446 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCAT-T GCCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT -TCATCT
* * * * * *
89494 TCATCG TCATCA TCATCG TCATCT TCATCG TCATCT TCATCG TCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
89542 TCATCT TC
1 TCATCT TC
89550 TGCGACCGCT
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
5 1 0.01
6 76 0.97
7 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.08, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:91564 original size:199 final size:199
Alignment explanation
Indices: 91008--92365 Score: 2443
Period size: 199 Copynumber: 6.9 Consensus size: 199
90998 TTTAAATTAG
*
91008 TATCGACACAAACTAAA--ACGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAT
1 TATCGACACAAACTAAATTA-GTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAA
91071 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
65 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
*
91136 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-GAAC
130 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA-
91200 CAAAAA
194 CAAAAA
* *
91206 TATCGACACCAACTAAA-AAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
91270 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
91335 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTTCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
91400 AAAA
196 AAAA
91404 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
*
91469 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATATTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
91534 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
91599 AAAA
196 AAAA
* * *
91603 TATCGACACCAACTAAA-AAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACTGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
91667 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
91732 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
91797 AAAA
196 AAAA
91801 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
91866 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
91931 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
91996 AAAA
196 AAAA
92000 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
*
92065 CTTGTACCGGTTAGATTG---AA--A-A-ATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
92123 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCCGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
92188 AAAA
196 AAAA
92192 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
* *
92257 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
* *
92322 TTGAAACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
130 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
92366 ATTGGCCATA
Statistics
Matches: 1124, Mismatches: 24, Indels: 22
0.96 0.02 0.02
Matches are distributed among these distances:
192 186 0.17
193 1 0.00
194 1 0.00
195 2 0.00
196 2 0.00
197 1 0.00
198 398 0.35
199 475 0.42
200 58 0.05
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (199 bp):
TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
AAAA
Found at i:91760 original size:397 final size:397
Alignment explanation
Indices: 91008--92365 Score: 2473
Period size: 397 Copynumber: 3.4 Consensus size: 397
90998 TTTAAATTAG
*
91008 TATCGACACAAACTAAA--ACGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAT
1 TATCGACACAAACTAAATTA-GTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAA
91071 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
65 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
*
91136 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGAACC
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACC
91201 AAAAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
195 AAAAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
91266 TAAACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
260 TAAACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
91331 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTTCATTCATTCTGG
325 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
91396 AACAAAAA
390 AACAAAAA
91404 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
*
91469 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATATTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
91534 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCA
*
91599 AAAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACTGGT
196 AAAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGT
91664 AAACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
261 AAACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
*
91729 GATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGA
326 GATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGA
91794 ACAAAAA
391 ACAAAAA
91801 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
91866 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
91931 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCA
* *
91996 AAAATATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACCAACTAAA-AAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
*
92061 TAAACTTGTACCGGTTAGATTG---AA--A-A-ATTACATTATACTTTTGGGTTCGATGTTTTTG
260 TAAACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
92119 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCCGG
325 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
92184 AACAAAAA
390 AACAAAAA
92192 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
* *
92257 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
* * *
92322 TTGAAACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCT
92366 ATTGGCCATA
Statistics
Matches: 939, Mismatches: 19, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
391 214 0.23
392 58 0.06
393 1 0.00
395 2 0.00
396 17 0.02
397 583 0.62
398 64 0.07
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (397 bp):
TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCA
AAAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGT
AAACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
GATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGA
ACAAAAA
Found at i:92533 original size:19 final size:19
Alignment explanation
Indices: 92487--92535 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
92477 TTATATTCAC
*
92487 ATACAAAAATATAAATTGT
1 ATACAAAATTATAAATTGT
92506 ATACAAAATTATAAATCT-T
1 ATACAAAATTATAAAT-TGT
92525 ATACAAAATTA
1 ATACAAAATTA
92536 ACCATACATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 27 0.96
20 1 0.04
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATTGT
Found at i:94360 original size:33 final size:33
Alignment explanation
Indices: 94323--94388 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
94313 CATCTTAATA
*
94323 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
94356 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
94389 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:94446 original size:21 final size:21
Alignment explanation
Indices: 94421--94464 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
94411 CCCCTTATAC
94421 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
94442 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
94463 CT
1 CT
94465 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:96885 original size:20 final size:20
Alignment explanation
Indices: 96858--96904 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
96848 TTCGGTAACG
96858 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
96877 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
96898 TTTTACC
1 TTTTACC
96905 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:97807 original size:457 final size:456
Alignment explanation
Indices: 96953--97899 Score: 1790
Period size: 457 Copynumber: 2.1 Consensus size: 456
96943 ACTTTTATAC
96953 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
97018 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
66 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
* *
97083 TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAT
131 TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
*
97148 ATAATAATAAATATGTTTTCCACAGTGAAATAAGTATGTACACTTTTATAAAAATGATATATACT
196 ATAATAATAAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATACT
97213 TTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACA
261 TTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACA
97278 ATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATT
326 ATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATT
*
97343 ATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTTTTCCACAGTGAAAT
391 ATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTT-CACAGTGAAAT
97408 AA
455 AA
97410 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
97475 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
65 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
97540 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
130 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
97605 GATAATAATAAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATA-
195 GATAATAATAAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATAC
97669 TTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTAC
260 TTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTAC
* *
97734 AATATTAATTTAATAATTTCATTTACACACAAAATTATTTGATTTTTTGATATTTTATAAAATAT
325 AATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATAT
*
97799 TATTTAGAATTTAAATTTAACAATATTAATCAAAGATAATAATAAATATATTTTCACAGTGAAAT
390 TATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAAT
97864 AA
455 AA
97866 GTATGGACACTTTTATAAAAA-GAATATATACTTT
1 GTATGGACACTTTTATAAAAATG-ATATATACTTT
97900 ACAATATAAC
Statistics
Matches: 481, Mismatches: 7, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
455 1 0.00
456 45 0.09
457 242 0.50
458 193 0.40
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.45
Consensus pattern (456 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
ATAATAATAAATATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATATATACT
TTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACA
ATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTATTTGATATTTTATAAAATATT
ATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATA
A
Found at i:97838 original size:228 final size:229
Alignment explanation
Indices: 96953--97899 Score: 1794
Period size: 229 Copynumber: 4.1 Consensus size: 229
96943 ACTTTTATAC
96953 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
97017 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
*
97082 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
*
97147 TATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
*
97181 GTATGTACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
97246 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
97311 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
97376 GATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
97410 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
97475 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
97540 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
97605 GATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
97639 GTATGGACACTTTTATAAAAATGATATATA-TTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
97703 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
* *
97768 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAATCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
*
97833 GATAATAATAAATATATTTT-CACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
97866 GTATGGACACTTTTATAAAAA-GAATATATACTTT
1 GTATGGACACTTTTATAAAAATG-ATATATACTTT
97900 ACAATATAAC
Statistics
Matches: 708, Mismatches: 8, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
226 1 0.00
227 41 0.06
228 244 0.34
229 422 0.60
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.45
Consensus pattern (229 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
GATAATAATAAATATGTTTTCCACAGTGAAATAA
Found at i:98780 original size:2 final size:2
Alignment explanation
Indices: 98773--98802 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
98763 TAAGAGTCCG
*
98773 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98803 GAATACGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:100028 original size:21 final size:21
Alignment explanation
Indices: 99984--100028 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
99974 TTTTTAAAAC
* *
99984 TTTTTAATAATAAAAATATTA
1 TTTTTAAAAATAAAAATATAA
100005 TTTTTAAAAATAATAAATA-AA
1 TTTTTAAAAATAA-AAATATAA
100026 TTT
1 TTT
100029 AATTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTTTAAAAATAAAAATATAA
Found at i:101324 original size:14 final size:14
Alignment explanation
Indices: 101305--101332 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101295 AATGGATCAA
101305 GCTGTTGCTTAACT
1 GCTGTTGCTTAACT
101319 GCTGTTGCTTAACT
1 GCTGTTGCTTAACT
101333 TTCTTAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (14 bp):
GCTGTTGCTTAACT
Found at i:105035 original size:23 final size:23
Alignment explanation
Indices: 105009--105054 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
104999 ATTTGTGTTA
*
105009 GTTCGTTTAGCATTTATGAATAT
1 GTTCGTTTAACATTTATGAATAT
*
105032 GTTCGTTTAACGTTTATGAATAT
1 GTTCGTTTAACATTTATGAATAT
105055 ATCTTTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (23 bp):
GTTCGTTTAACATTTATGAATAT
Found at i:105130 original size:23 final size:23
Alignment explanation
Indices: 105089--105132 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
105079 TGGTTATATG
* * *
105089 TTCACGAATATTTTCATTTATTA
1 TTCACGAACATGTTAATTTATTA
105112 TTCACGAACATGTTAATTTAT
1 TTCACGAACATGTTAATTTAT
105133 AAGTTAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.48
Consensus pattern (23 bp):
TTCACGAACATGTTAATTTATTA
Found at i:109223 original size:229 final size:229
Alignment explanation
Indices: 108822--109540 Score: 1282
Period size: 229 Copynumber: 3.1 Consensus size: 229
108812 GTTATATTGT
* * * *
108822 AAAGTATCTATCCTTTTTATAAAAATGTCCATATTTATTTCACTGT-GAAAATATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATATTTATTATT
*
108886 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAA
* *
108951 ATAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACACTATTA
130 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
*
109016 AAAAAAATTGAAACATAAATTACATAATTTTAAAA
195 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
* *
109051 AAAGTATATATCATTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATATTTATTATT
*
109116 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
109181 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
109246 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
*
109280 AAAGTATATATCATTTTTATAAAAGTATCCATACTTATTTCACTGTGGAAAATATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATATTTATTATT
109345 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
109410 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT--
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
109473 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
* *
109507 GAAGTATATATCATTTTTATAAAAGTGTTCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
109541 GTATAAAAGT
Statistics
Matches: 471, Mismatches: 18, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
227 65 0.14
229 336 0.71
230 70 0.15
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (229 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:109612 original size:20 final size:19
Alignment explanation
Indices: 109589--109635 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
109579 CGATATACCA
109589 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
109609 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
109629 GGTAAAA
1 GGTAAAA
109636 CTTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:109792 original size:20 final size:19
Alignment explanation
Indices: 109769--109815 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
109759 CGATATAACA
109769 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
109789 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
*
109809 GATAAAA
1 GGTAAAA
109816 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.11, G:0.15, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:109817 original size:17 final size:20
Alignment explanation
Indices: 109778--109820 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
109768 AGGTAAAAAT
109778 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGGTATCAAA
109798 ATGATAAAACC-G-AT-AAA
1 ATGATAAAACCGGTATCAAA
109815 ATGATA
1 ATGATA
109821 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 2 0.09
19 1 0.04
20 11 0.48
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (20 bp):
ATGATAAAACCGGTATCAAA
Found at i:110509 original size:23 final size:23
Alignment explanation
Indices: 110478--110541 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
110468 ATAGGTAAAA
* *
110478 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCACTT
* * *
110501 ATATAATGTAATATGTATCATTT
1 ATATAATGTAATAGGTAGCACTT
110524 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
110542 TTGTAAAGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCACTT
Found at i:110991 original size:23 final size:23
Alignment explanation
Indices: 110960--111023 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
110950 ATAGGTAAAA
*
110960 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
110983 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
111006 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
111024 TTGTAAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:111470 original size:23 final size:23
Alignment explanation
Indices: 111439--111502 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
111429 ATAGGTAAAA
*
111439 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
111462 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
111485 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
111503 TTGTAAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:111951 original size:23 final size:23
Alignment explanation
Indices: 111920--111983 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
111910 ATAGGTAAAA
*
111920 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
111943 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
111966 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
111984 TTGTAAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:112027 original size:481 final size:482
Alignment explanation
Indices: 110421--112386 Score: 3726
Period size: 481 Copynumber: 4.1 Consensus size: 482
110411 CAATTGCTTC
* *
110421 AAAATGTATCGATCCATTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
1 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
* *
110486 TAATAGGTAGCGCTTATATAATGTAATATGTATCATTTATATAATGTAATAGGTAGTTGTAAAGT
66 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
* *
110551 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATC
131 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATC
110616 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
196 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
110681 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
261 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
110746 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
326 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
* **
110811 TTTTGTGTGAATGAAATTATTAAATTAATATTGTAAATGGAAAACATGAAACACTATTAAAAAAA
391 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
*
110876 TTTGAAACATAAATTACATAACTTTAA
456 ATTGAAACATAAATTACATAACTTTAA
110903 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
1 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
110968 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
66 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
*
111033 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAAGTTATC
131 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATC
*
111098 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTATGTT
196 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
111163 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATA--T-TTATTATCTTT
261 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
111225 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
326 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
111290 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
391 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
111355 ATTGAAACATAAATTACATAACTTTAA
456 ATTGAAACATAAATTACATAACTTTAA
* *
111382 AAAGAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
1 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
111447 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
66 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
* *
111512 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATC
131 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATC
111577 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
196 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
111642 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
261 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
111707 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
326 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
111772 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAA
391 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
*
111836 TTTGAAACATAAATTACATAACTTTAA
456 ATTGAAACATAAATTACATAACTTTAA
111863 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
1 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
111928 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
66 TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
*
111993 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATT
131 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATC
112058 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
196 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
112123 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
261 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
112188 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
326 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
112253 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAA
391 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
112317 ATTGAAACATAAATTACATAACTTTAA
456 ATTGAAACATAAATTACATAACTTTAA
*
112344 AAAAATTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
1 AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
112387 CATATTATAA
Statistics
Matches: 1455, Mismatches: 26, Indels: 7
0.98 0.02 0.00
Matches are distributed among these distances:
479 468 0.32
480 1 0.00
481 550 0.38
482 436 0.30
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (482 bp):
AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
TAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGT
ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATC
TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
ATTGAAACATAAATTACATAACTTTAA
Found at i:114856 original size:23 final size:22
Alignment explanation
Indices: 114799--114858 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
114789 AAAATGTGTG
*
114799 TTTTTTAAAAATATATATAATT
1 TTTTTTAAAATTATATATAATT
** *
114821 TATTTTTTTAATTTTATATATATT
1 T-TTTTTAAAATTATATATA-ATT
114845 TTTTTTAAAATTAT
1 TTTTTTAAAATTAT
114859 CAGTTTGTGA
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
22 1 0.03
23 24 0.83
24 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTTAAAATTATATATAATT
Found at i:115147 original size:16 final size:16
Alignment explanation
Indices: 115126--115158 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
115116 AAATAAACTA
115126 ATAATCATGAT-ATTAT
1 ATAATCAT-ATAATTAT
115142 ATAATCATATAATTAT
1 ATAATCATATAATTAT
115158 A
1 A
115159 ATTTTTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (16 bp):
ATAATCATATAATTAT
Found at i:130337 original size:24 final size:24
Alignment explanation
Indices: 130303--130349 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
130293 TCCAGTCTCC
*
130303 CACCCATTGTGAAACTACTTTGAT
1 CACCCACTGTGAAACTACTTTGAT
*
130327 CACCCACTGTGAAACTGCTTTGA
1 CACCCACTGTGAAACTACTTTGA
130350 CCATTTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (24 bp):
CACCCACTGTGAAACTACTTTGAT
Done.