genome.fa.s1899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001899.1 Hibiscus syriacus cultivar Beakdansim tig00003848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183856

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260--1326	32	2.1	33	83	8	84	31	37	1	29	1.67
7575--7635	13	5.1	11	73	23	52	0	19	3	77	0.91
7575--7635	18	3.3	18	80	17	72	0	19	3	77	0.91
10564--10613	19	2.6	20	84	6	59	46	6	16	32	1.71
16369--16415	19	2.5	19	89	6	69	36	14	6	42	1.72
38622--38649	14	2.0	14	100	0	56	71	0	14	14	1.15
38619--38685	17	4.1	17	85	12	86	62	4	13	19	1.47
43781--43835	24	2.4	24	85	8	71	61	10	16	10	1.55
43782--43837	23	2.3	25	78	9	71	62	10	16	10	1.54
43782--43842	24	2.6	23	78	5	68	62	9	18	9	1.53
56281--56325	22	2.0	23	86	4	65	68	8	13	8	1.38
61660--61691	16	2.0	16	100	0	64	31	18	6	43	1.75
63065--63114	14	3.9	13	73	21	52	78	2	20	0	0.86
63054--63114	19	3.3	18	80	17	72	77	3	19	0	0.91
65208--65239	16	2.0	16	100	0	64	31	18	6	43	1.75
69209--69241	16	2.0	17	88	5	50	6	9	9	75	1.18
76286--76315	10	3.0	10	95	0	51	30	30	6	33	1.83
79023--80134	555	2.0	557	91	2	1797	34	18	21	24	1.96
84887--84948	8	7.8	8	84	10	65	90	6	3	0	0.55
84894--84951	17	3.5	17	88	2	82	91	5	3	0	0.51
84887--84938	1	52.0	1	88	0	77	94	3	1	0	0.37
100984--101086	34	3.0	34	80	9	95	31	34	1	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105465--105567	34	3.0	34	83	9	104	31	35	1	31	1.69
115157--115227	35	2.0	35	100	0	142	49	2	14	33	1.58
127862--127893	15	2.2	15	94	5	57	50	6	0	43	1.27
131121--131269	36	4.2	36	92	0	237	32	35	4	28	1.76
131121--131255	13	11.3	11	70	26	80	31	35	3	29	1.75
131133--131308	36	5.1	33	86	7	99	30	35	3	30	1.74
131727--131759	14	2.4	14	90	10	50	81	0	18	0	0.68
131725--131770	17	2.7	17	77	9	58	76	4	19	0	0.96
135242--135390	36	4.2	36	92	0	237	32	35	4	28	1.76
135242--135376	13	11.3	11	70	26	80	31	35	3	29	1.75
135254--135429	36	5.1	33	86	7	99	30	35	3	30	1.74
136215--136244	12	2.4	12	94	5	51	76	0	23	0	0.78
141114--141143	12	2.4	12	94	5	51	76	0	23	0	0.78
171439--171506	33	2.1	33	83	5	84	30	36	1	30	1.67
174593--174628	17	2.1	17	100	0	72	27	27	16	27	1.97
175883--175950	33	2.1	33	83	5	84	30	36	1	30	1.67
176903--176987	11	7.2	11	72	22	66	31	35	3	29	1.75
176900--177004	36	2.9	36	94	1	176	30	35	4	29	1.78
177385--177418	12	2.8	12	81	0	50	82	2	14	0	0.79
177385--177417	17	1.9	17	93	0	57	81	3	15	0	0.80
177374--177418	19	2.4	18	82	10	54	84	2	13	0	0.72
177374--177418	24	1.9	23	90	4	72	84	2	13	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177376--177400	7	3.6	7	100	0	50	88	0	12	0	0.53

Tables:   1

The End!