genome.fa.s19.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000019.1 Hibiscus syriacus cultivar Beakdansim tig00000035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51935

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3438--3471	18	1.9	17	88	5	50	41	2	5	50	1.42
3979--4010	2	16.5	2	93	6	57	53	0	0	46	1.00
3981--4015	17	2.1	17	94	0	61	54	2	0	42	1.15
5335--5364	13	2.3	13	94	0	51	10	13	46	30	1.75
5914--6001	46	1.9	46	81	9	108	31	15	25	27	1.96
5975--6076	42	2.5	40	85	6	125	21	18	36	23	1.95
6318--6431	59	1.9	59	89	0	174	38	11	14	35	1.83
7004--7065	25	2.6	24	80	14	74	46	3	9	40	1.53
7311--7358	22	2.2	22	85	7	62	41	8	14	35	1.76
7745--7806	25	2.6	24	80	14	74	46	3	9	40	1.53
6582--8049	741	2.0	741	97	0	2774	32	13	16	36	1.88
11995--12037	13	3.2	13	81	18	61	51	13	20	13	1.76
11997--12036	21	2.0	20	85	5	53	47	15	22	15	1.82
11995--12036	12	3.2	12	84	15	57	50	14	21	14	1.78
12755--12816	32	1.9	32	96	0	115	59	9	14	16	1.60
14602--14629	2	14.0	2	100	0	56	50	0	0	50	1.00
16591--16772	50	3.6	51	80	3	197	47	14	9	28	1.76
16580--16755	51	3.5	51	79	5	162	50	14	9	26	1.73
16580--16772	102	1.9	102	83	2	253	47	14	10	27	1.76
21672--21872	95	2.1	95	84	1	260	38	11	22	26	1.89
22271--22622	81	4.3	81	88	2	501	34	12	21	31	1.91
40224--40288	32	2.0	32	87	0	94	41	16	24	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49645--49849	102	2.0	102	94	1	358	25	18	26	29	1.98

Tables:   1

The End!