Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 62
Found at i:22 original size:7 final size:7
Alignment explanation
Indices: 3--5120 Score: 5628
Period size: 7 Copynumber: 780.1 Consensus size: 7
1 CT
3 AACCCTA
1 AACCCTA
10 AA-CCTA
1 AACCCTA
16 AACCCTA
1 AACCCTA
23 AACCCT-
1 AACCCTA
*
29 AACCCGA
1 AACCCTA
36 AACCCTA
1 AACCCTA
43 AA-CCTA
1 AACCCTA
49 AACCCTA
1 AACCCTA
56 AACCCTA
1 AACCCTA
63 AACCCTA
1 AACCCTA
70 AACCCT-
1 AACCCTA
76 AACCC-A
1 AACCCTA
82 AACCCTA
1 AACCCTA
89 AACCCT-
1 AACCCTA
95 AACCCTA
1 AACCCTA
102 AACCCTA
1 AACCCTA
109 AACCCT-
1 AACCCTA
115 AA-CCT-
1 AACCCTA
120 AACCCTA
1 AACCCTA
127 AACCCTA
1 AACCCTA
134 AACCCTA
1 AACCCTA
141 AACCCTA
1 AACCCTA
148 AACCCTA
1 AACCCTA
155 AACCCTA
1 AACCCTA
162 AACCCTA
1 AACCCTA
169 AACCCTA
1 AACCCTA
176 AACCCTA
1 AACCCTA
183 AACCCTA
1 AACCCTA
190 AA-CCT-
1 AACCCTA
195 AACCCTA
1 AACCCTA
202 AA-CCT-
1 AACCCTA
207 -ACCCTA
1 AACCCTA
213 AACCCT-
1 AACCCTA
219 AACCCTA
1 AACCCTA
226 AACCCT-
1 AACCCTA
232 AACCCT-
1 AACCCTA
238 AACCCTA
1 AACCCTA
245 AACCCTA
1 AACCCTA
252 CCCAACCCTA
1 ---AACCCTA
262 AACCCT-
1 AACCCTA
268 AACCCTA
1 AACCCTA
275 AACCCTA
1 AACCCTA
282 AACCCT-
1 AACCCTA
288 AA-CCT-
1 AACCCTA
293 AACCCT-
1 AACCCTA
*
299 AAGCCT-
1 AACCCTA
305 AACCCT-
1 AACCCTA
311 AACCCT-
1 AACCCTA
317 AACCCT-
1 AACCCTA
323 AA-CCTA
1 AACCCTA
329 AA-CCT-
1 AACCCTA
334 AACCCTA
1 AACCCTA
341 AACCCT-
1 AACCCTA
347 AA-CCT-
1 AACCCTA
352 AACCCTA
1 AACCCTA
359 AACCCTA
1 AACCCTA
366 AA-CCT-
1 AACCCTA
371 AACCCTA
1 AACCCTA
378 AACCCTA
1 AACCCTA
385 AACCCT-
1 AACCCTA
391 AACCCT-
1 AACCCTA
397 AACCCT-
1 AACCCTA
403 AACCCTA
1 AACCCTA
410 AACCCTA
1 AACCCTA
417 AACCCTA
1 AACCCTA
424 AACCCTA
1 AACCCTA
*
431 ACCCCT-
1 AACCCTA
437 AACCCT-
1 AACCCTA
443 AA-CCTA
1 AACCCTA
449 AACCCT-
1 AACCCTA
455 AACCCT-
1 AACCCTA
461 AACCCT-
1 AACCCTA
467 AACCCTA
1 AACCCTA
474 AACCCT-
1 AACCCTA
480 AACCCT-
1 AACCCTA
486 AACCCTA
1 AACCCTA
493 AACCCT-
1 AACCCTA
499 AACCCT-
1 AACCCTA
505 AACCCTA
1 AACCCTA
*
512 AGCCCTA
1 AACCCTA
519 AACCCT-
1 AACCCTA
525 AA-CCT-
1 AACCCTA
530 AACCCTA
1 AACCCTA
537 AA-CC--
1 AACCCTA
541 AACCCT-
1 AACCCTA
547 AACCCTA
1 AACCCTA
554 AACCCTA
1 AACCCTA
561 AACCCTA
1 AACCCTA
568 AACCCT-
1 AACCCTA
*
574 -CCCCT-
1 AACCCTA
579 AACCCT-
1 AACCCTA
585 AACCCTA
1 AACCCTA
592 AACCCT-
1 AACCCTA
*
598 -CCCCTA
1 AACCCTA
604 AACCCTA
1 AACCCTA
611 AACCCTA
1 AACCCTA
618 AACCCTA
1 AACCCTA
625 AACCCT-
1 AACCCTA
631 AACCCTAA
1 AACCCT-A
639 AACCCT-
1 AACCCTA
645 AACCCT-
1 AACCCTA
651 AACCCTA
1 AACCCTA
*
658 ACCCCTA
1 AACCCTA
665 AA-CCTA
1 AACCCTA
671 AACCCT-
1 AACCCTA
677 AACCCT-
1 AACCCTA
683 AACCCT-
1 AACCCTA
**
689 CCCCCTA
1 AACCCTA
696 AACCCT-
1 AACCCTA
702 AACCCTA
1 AACCCTA
709 AACCCT-
1 AACCCTA
715 AACCCT-
1 AACCCTA
721 AACCCTA
1 AACCCTA
728 AACCCTA
1 AACCCTA
735 AACCCTA
1 AACCCTA
742 AACCCTA
1 AACCCTA
749 AACCCTA
1 AACCCTA
756 AACCCTA
1 AACCCTA
763 AACCCT-
1 AACCCTA
769 AACCCTA
1 AACCCTA
776 AACCCT-
1 AACCCTA
782 AACCCT-
1 AACCCTA
788 AACCCT-
1 AACCCTA
794 AACCCT-
1 AACCCTA
800 AACCCT-
1 AACCCTA
806 AACCCTA
1 AACCCTA
813 AA-CCT-
1 AACCCTA
818 AACCCTA
1 AACCCTA
825 AACCCTA
1 AACCCTA
832 AACCCT-
1 AACCCTA
838 --CCCT-
1 AACCCTA
842 AACCCT-
1 AACCCTA
848 AACCCTA
1 AACCCTA
855 AACCCT-
1 AACCCTA
861 AACCCT-
1 AACCCTA
867 AACCCT-
1 AACCCTA
873 AACCCT-
1 AACCCTA
879 AACCCTA
1 AACCCTA
886 AACCCT-
1 AACCCTA
892 AACCCTA
1 AACCCTA
899 AACCCTA
1 AACCCTA
906 AACCCT-
1 AACCCTA
912 AACCCTA
1 AACCCTA
919 AACCCT-
1 AACCCTA
925 AACCCT-
1 AACCCTA
931 AACCCT-
1 AACCCTA
937 AACCCT-
1 AACCCTA
943 AACCCT-
1 AACCCTA
949 AACCCT-
1 AACCCTA
955 AACCCTA
1 AACCCTA
962 AACCCT-
1 AACCCTA
968 AACCCTA
1 AACCCTA
975 AACCCTA
1 AACCCTA
982 AACCCTA
1 AACCCTA
989 AACCCT-
1 AACCCTA
995 AACCCT-
1 AACCCTA
1001 AACCCT-
1 AACCCTA
1007 AACCCT-
1 AACCCTA
1013 AACCCTA
1 AACCCTA
1020 AACCCT-
1 AACCCTA
1026 AA-CCT-
1 AACCCTA
1031 AACCCTA
1 AACCCTA
1038 AACCCTA
1 AACCCTA
1045 AACCCTA
1 AACCCTA
1052 AACCCT-
1 AACCCTA
1058 AACCCTA
1 AACCCTA
1065 AA-CCTA
1 AACCCTA
1071 AACCCT-
1 AACCCTA
1077 AACCCTA
1 AACCCTA
1084 CCTAACCCTA
1 ---AACCCTA
1094 AACCCTA
1 AACCCTA
1101 AACCCT-
1 AACCCTA
1107 AACCCT-
1 AACCCTA
1113 AACCCT-
1 AACCCTA
1119 AACCCTA
1 AACCCTA
1126 AA-CCTA
1 AACCCTA
1132 AA-CCT-
1 AACCCTA
1137 AACCCTA
1 AACCCTA
1144 AACCCTA
1 AACCCTA
*
1151 AGCCCT-
1 AACCCTA
1157 AACCCT-
1 AACCCTA
1163 AACCCT-
1 AACCCTA
1169 AACCCT-
1 AACCCTA
1175 AA-CCT-
1 AACCCTA
1180 AACCCTA
1 AACCCTA
1187 AACCCT-
1 AACCCTA
*
1193 ACCCCT-
1 AACCCTA
1199 AA-CCTAA
1 AACCCT-A
1206 AACCCTA
1 AACCCTA
1213 AA-CCTA
1 AACCCTA
1219 AACCCT-
1 AACCCTA
1225 AACCCT-
1 AACCCTA
1231 AACCCT-
1 AACCCTA
*
1237 AAGCCT-
1 AACCCTA
1243 AACCCTA
1 AACCCTA
1250 AACCCT-
1 AACCCTA
1256 AACCCT-
1 AACCCTA
1262 AACCCT-
1 AACCCTA
1268 AA-CCT-
1 AACCCTA
1273 AACCCT-
1 AACCCTA
1279 -A-CCTA
1 AACCCTA
1284 AA-CCT-
1 AACCCTA
1289 AACCCT-
1 AACCCTA
1295 AACCCT-
1 AACCCTA
1301 AACCCT-
1 AACCCTA
1307 AACCCTA
1 AACCCTA
1314 AACCCT-
1 AACCCTA
1320 AACCCTA
1 AACCCTA
1327 AACCCT-
1 AACCCTA
1333 AACCCTA
1 AACCCTA
1340 AACCCT-
1 AACCCTA
1346 AACCCTA
1 AACCCTA
1353 AACCCTA
1 AACCCTA
1360 AACCCT-
1 AACCCTA
1366 AACCCT-
1 AACCCTA
1372 AACCCT-
1 AACCCTA
1378 AACCCT-
1 AACCCTA
1384 AACCCT-
1 AACCCTA
1390 AACCCT-
1 AACCCTA
1396 --CCCTA
1 AACCCTA
1401 AACCCTA
1 AACCCTA
1408 AA-CCTA
1 AACCCTA
*
1414 AGCCCT-
1 AACCCTA
1420 AACCCTA
1 AACCCTA
*
1427 AAGCCT-
1 AACCCTA
1433 AACCCT-
1 AACCCTA
1439 AACCCTA
1 AACCCTA
1446 AACCCT-
1 AACCCTA
*
1452 AAGCCTA
1 AACCCTA
1459 AACCCTA
1 AACCCTA
1466 AACCCTA
1 AACCCTA
1473 AACCCT-
1 AACCCTA
1479 AACCCTA
1 AACCCTA
1486 AACCCT-
1 AACCCTA
1492 AACCCT-
1 AACCCTA
1498 AACCCT-
1 AACCCTA
1504 AACCCT-
1 AACCCTA
1510 AACCCTA
1 AACCCTA
1517 AACCCTA
1 AACCCTA
1524 AACCCTA
1 AACCCTA
1531 AACCCTA
1 AACCCTA
1538 AACCCT-
1 AACCCTA
1544 AACCC-A
1 AACCCTA
*
1550 AGCCCT-
1 AACCCTA
1556 AACCCT-
1 AACCCTA
1562 AACCCTA
1 AACCCTA
1569 AACCCT-
1 AACCCTA
1575 AACCCTA
1 AACCCTA
1582 AA-CCTA
1 AACCCTA
1588 AACCCTA
1 AACCCTA
1595 AACCCTAA
1 AACCCT-A
1603 AACCCTA
1 AACCCTA
1610 AACCCT-
1 AACCCTA
1616 AACCCTA
1 AACCCTA
1623 AACCCT-
1 AACCCTA
1629 AACCCT-
1 AACCCTA
1635 AACCCT-
1 AACCCTA
1641 AACCCTA
1 AACCCTA
1648 AACCCT-
1 AACCCTA
1654 AACCCTA
1 AACCCTA
1661 AACCCTA
1 AACCCTA
1668 AACCCTA
1 AACCCTA
1675 AACCCT-
1 AACCCTA
1681 AACCCTA
1 AACCCTA
1688 AACCCTA
1 AACCCTA
1695 AACCCTA
1 AACCCTA
1702 AACCCT-
1 AACCCTA
1708 AACCCT-
1 AACCCTA
1714 AACCCTA
1 AACCCTA
1721 AACCCT-
1 AACCCTA
1727 AACCCT-
1 AACCCTA
1733 AACCCT-
1 AACCCTA
1739 AACCCT-
1 AACCCTA
1745 AACCCTA
1 AACCCTA
1752 AAGCCCTA
1 AA-CCCTA
1760 AACCCTA
1 AACCCTA
1767 AACCCTA
1 AACCCTA
*
1774 AGCCCTA
1 AACCCTA
1781 AACCCTA
1 AACCCTA
1788 AACCCT-
1 AACCCTA
1794 AACCCT-
1 AACCCTA
1800 AACCCT-
1 AACCCTA
1806 AACCCTAA
1 AACCCT-A
1814 AACCCTA
1 AACCCTA
1821 AACCCT-
1 AACCCTA
1827 AACCCT-
1 AACCCTA
1833 AACCCTA
1 AACCCTA
1840 AACCCTA
1 AACCCTA
1847 AACCCT-
1 AACCCTA
*
1853 AAGCCTA
1 AACCCTA
*
1860 AGCCCCCTA
1 A--ACCCTA
*
1869 AAACCT-
1 AACCCTA
1875 AACCCTA
1 AACCCTA
1882 AACCCT-
1 AACCCTA
1888 AACCCTA
1 AACCCTA
1895 AACCCTA
1 AACCCTA
1902 AACCCT-
1 AACCCTA
1908 AACCCT-
1 AACCCTA
1914 AACCCT-
1 AACCCTA
1920 AACCCTA
1 AACCCTA
1927 AACCCTA
1 AACCCTA
1934 AACCCT-
1 AACCCTA
1940 AACCCTA
1 AACCCTA
1947 AACCCTA
1 AACCCTA
1954 AACCCT-
1 AACCCTA
1960 AACCCTA
1 AACCCTA
1967 AA--CT-
1 AACCCTA
1971 AACCCT-
1 AACCCTA
1977 AACCCT-
1 AACCCTA
1983 AACCCT-
1 AACCCTA
1989 AACCCTA
1 AACCCTA
1996 AA-CC--
1 AACCCTA
2000 AACCCT-
1 AACCCTA
2006 AACCCTA
1 AACCCTA
2013 AACCCT-
1 AACCCTA
2019 AACCCTA
1 AACCCTA
2026 AACCCT-
1 AACCCTA
2032 AACCCT-
1 AACCCTA
2038 AACCCT-
1 AACCCTA
2044 AACCC-A
1 AACCCTA
2050 AACCCTA
1 AACCCTA
2057 AACCCT-
1 AACCCTA
2063 AACCCTA
1 AACCCTA
2070 AACCCTACTA
1 AA-CC--CTA
2080 AACCCT-
1 AACCCTA
2086 AACCCTA
1 AACCCTA
2093 AACCCTA
1 AACCCTA
2100 AACCCT-
1 AACCCTA
2106 AACCCTA
1 AACCCTA
2113 AA-CCT-
1 AACCCTA
2118 AACCCT-
1 AACCCTA
2124 AACCCT-
1 AACCCTA
2130 AACCCT-
1 AACCCTA
2136 AACCCTA
1 AACCCTA
2143 AACCCT-
1 AACCCTA
2149 AACCCT-
1 AACCCTA
2155 AACCCT-
1 AACCCTA
*
2161 AAGCCT-
1 AACCCTA
2167 AACCCT-
1 AACCCTA
2173 AACCCTA
1 AACCCTA
2180 AA-CCT-
1 AACCCTA
2185 AACCCTA
1 AACCCTA
2192 AACCC--
1 AACCCTA
2197 AACCCTA
1 AACCCTA
2204 AACCCT-
1 AACCCTA
2210 AACCCT-
1 AACCCTA
2216 AACCCTA
1 AACCCTA
2223 AACCCT-
1 AACCCTA
2229 AACCCTA
1 AACCCTA
2236 AACCCT-
1 AACCCTA
2242 AACCCT-
1 AACCCTA
2248 AA-CCT-
1 AACCCTA
2253 AACCCTA
1 AACCCTA
2260 AACCCTA
1 AACCCTA
2267 AACCCT-
1 AACCCTA
2273 AACCCTA
1 AACCCTA
*
2280 ACCCCTA
1 AACCCTA
2287 AA-CCTA
1 AACCCTA
2293 AACCCTA
1 AACCCTA
2300 AACCCT-
1 AACCCTA
2306 AACCCTA
1 AACCCTA
2313 AA-CCTA
1 AACCCTA
2319 AACCCTA
1 AACCCTA
2326 AACCCT-
1 AACCCTA
2332 AACCCTA
1 AACCCTA
2339 AA-CCT-
1 AACCCTA
2344 AACCCTA
1 AACCCTA
2351 AACCCTA
1 AACCCTA
2358 AACCCTA
1 AACCCTA
2365 AACCCT-
1 AACCCTA
2371 AACCCT-
1 AACCCTA
2377 AACCCTA
1 AACCCTA
2384 AACCCTA
1 AACCCTA
2391 AACCCTA
1 AACCCTA
2398 AACCCT-
1 AACCCTA
2404 AACCCT-
1 AACCCTA
*
2410 AAGCCTA
1 AACCCTA
2417 AACCCT-
1 AACCCTA
2423 AACCCTA
1 AACCCTA
2430 AACCCTA
1 AACCCTA
2437 AACCCT-
1 AACCCTA
2443 AACCCT-
1 AACCCTA
2449 AACCCT-
1 AACCCTA
2455 AACCCTA
1 AACCCTA
2462 AACCCTA
1 AACCCTA
2469 AACCCTA
1 AACCCTA
2476 AACCCTA
1 AACCCTA
2483 AACCCT-
1 AACCCTA
2489 AACCCT-
1 AACCCTA
2495 AACCCT-
1 AACCCTA
2501 AACCCTA
1 AACCCTA
2508 AACCCT-
1 AACCCTA
2514 AACCCT-
1 AACCCTA
2520 AACCCT-
1 AACCCTA
2526 AACCCT-
1 AACCCTA
2532 AACCCT-
1 AACCCTA
2538 AACCCT-
1 AACCCTA
2544 AACCCT-
1 AACCCTA
*
2550 AAGCCT-
1 AACCCTA
2556 AACCCTA
1 AACCCTA
2563 AACCCTA
1 AACCCTA
2570 AACCCTA
1 AACCCTA
2577 AACCCTA
1 AACCCTA
*
2584 AGCCCT-
1 AACCCTA
2590 AACCCT-
1 AACCCTA
2596 AACCCT-
1 AACCCTA
2602 AACCCTA
1 AACCCTA
*
2609 AGCCCTCCTA
1 A--AC-CCTA
2619 AACCCT-
1 AACCCTA
2625 AACCCT-
1 AACCCTA
2631 AACCCT-
1 AACCCTA
2637 AACCCTA
1 AACCCTA
2644 AACCCT-
1 AACCCTA
2650 AACCCT-
1 AACCCTA
2656 AA-CCT-
1 AACCCTA
2661 AACCCTA
1 AACCCTA
2668 AACCCTA
1 AACCCTA
2675 AACCCT-
1 AACCCTA
2681 AACCCTA
1 AACCCTA
2688 AACCCT-
1 AACCCTA
2694 AACCCT-
1 AACCCTA
2700 AACCCTA
1 AACCCTA
2707 AACCCTA
1 AACCCTA
*
2714 AGCCCT-
1 AACCCTA
2720 AA--CTA
1 AACCCTA
2725 AACCCTA
1 AACCCTA
2732 AAGCCCT-
1 AA-CCCTA
2739 AACCCTA
1 AACCCTA
2746 AACCCT-
1 AACCCTA
2752 AACCCTA
1 AACCCTA
2759 AACCCT-
1 AACCCTA
2765 AACCCT-
1 AACCCTA
2771 AACCCT-
1 AACCCTA
2777 AACCCTA
1 AACCCTA
2784 AACCCT-
1 AACCCTA
2790 AACCCT-
1 AACCCTA
2796 AACCCTA
1 AACCCTA
2803 AACCCT-
1 AACCCTA
2809 AACCCT-
1 AACCCTA
2815 AA-CCTA
1 AACCCTA
*
2821 AGCCCT-
1 AACCCTA
2827 AACCCT-
1 AACCCTA
2833 AACCCTA
1 AACCCTA
2840 AACCCTA
1 AACCCTA
*
2847 AGCCCT-
1 AACCCTA
2853 AA-CCT-
1 AACCCTA
*
2858 AGCCCT-
1 AACCCTA
2864 AACCCT-
1 AACCCTA
2870 AACCCTA
1 AACCCTA
2877 AA-CCTA
1 AACCCTA
*
2883 AGCCCTA
1 AACCCTA
*
2890 AGCCCTA
1 AACCCTA
*
2897 AGCCCTA
1 AACCCTA
2904 AACCCTA
1 AACCCTA
*
2911 AGCCCTA
1 AACCCTA
*
2918 AGCCCTA
1 AACCCTA
*
2925 AGCCCT-
1 AACCCTA
*
2931 AAGCCTA
1 AACCCTA
*
2938 AGCCCTA
1 AACCCTA
*
2945 AGCCCTA
1 AACCCTA
*
2952 AGCCCTA
1 AACCCTA
*
2959 AGCCCT-
1 AACCCTA
*
2965 AAGCCTA
1 AACCCTA
*
2972 AGCCCTA
1 AACCCTA
*
2979 AGCCCTA
1 AACCCTA
*
2986 AGCCCTA
1 AACCCTA
*
2993 AGCCCTA
1 AACCCTA
*
3000 AGCCCT-
1 AACCCTA
*
3006 AAGCCTA
1 AACCCTA
*
3013 AGCCCTA
1 AACCCTA
*
3020 AGCCCTA
1 AACCCTA
*
3027 AGCCCTA
1 AACCCTA
*
3034 AGCCCT-
1 AACCCTA
*
3040 AAGCCT-
1 AACCCTA
*
3046 AA-GCTA
1 AACCCTA
*
3052 AGCCCT-
1 AACCCTA
*
3058 AGCCCTA
1 AACCCTA
*
3065 AGCCCTA
1 AACCCTA
*
3072 AGCCCT-
1 AACCCTA
*
3078 AAGCCT-
1 AACCCTA
*
3084 AAGCCTA
1 AACCCTA
*
3091 AGCCCTA
1 AACCCTA
*
3098 AGCCCTA
1 AACCCTA
*
3105 AGCCCTA
1 AACCCTA
*
3112 AGCCCTA
1 AACCCTA
*
3119 AGCCCTA
1 AACCCTA
*
3126 AGCCCTA
1 AACCCTA
*
3133 AGCCCTA
1 AACCCTA
*
3140 AGCCCTA
1 AACCCTA
*
3147 AGCCCTA
1 AACCCTA
*
3154 AGCCCTA
1 AACCCTA
*
3161 AGCCCTA
1 AACCCTA
*
3168 AGCCCTA
1 AACCCTA
*
3175 AGCCCTA
1 AACCCTA
* *
3182 AGCCATA
1 AACCCTA
*
3189 AGCCCTA
1 AACCCTA
*
3196 AGCCCTA
1 AACCCTA
*
3203 AGCCCTA
1 AACCCTA
*
3210 AGCCCTA
1 AACCCTA
*
3217 AGCCCT-
1 AACCCTA
*
3223 AGCCCTA
1 AACCCTA
*
3230 AGCCCTA
1 AACCCTA
*
3237 AGCCCTA
1 AACCCTA
*
3244 AGCCCTA
1 AACCCTA
*
3251 AGCCCTA
1 AACCCTA
*
3258 AGCCCTA
1 AACCCTA
*
3265 AGCCCTA
1 AACCCTA
*
3272 AGCCCTA
1 AACCCTA
*
3279 AGCCCTA
1 AACCCTA
*
3286 AGCCCTA
1 AACCCTA
*
3293 AGCCCTA
1 AACCCTA
*
3300 AGCCCT-
1 AACCCTA
*
3306 AAGCCTA
1 AACCCTA
*
3313 AGCCCTA
1 AACCCTA
*
3320 AGCCCTA
1 AACCCTA
*
3327 AGCCCTA
1 AACCCTA
*
3334 AGCCCTA
1 AACCCTA
*
3341 AGCCCTA
1 AACCCTA
*
3348 AGCCCTA
1 AACCCTA
*
3355 AGCCCT-
1 AACCCTA
*
3361 AAGCCTA
1 AACCCTA
*
3368 AGCCCTA
1 AACCCTA
*
3375 AGCCCTA
1 AACCCTA
*
3382 AGCCCTA
1 AACCCTA
*
3389 AGCCCTA
1 AACCCTA
*
3396 AGCCCTA
1 AACCCTA
*
3403 AGCCCTA
1 AACCCTA
*
3410 AGCCCTA
1 AACCCTA
*
3417 AGCCCTA
1 AACCCTA
*
3424 AGCCCTA
1 AACCCTA
*
3431 AGCCCTA
1 AACCCTA
*
3438 AGCCCTA
1 AACCCTA
*
3445 AGCCCTA
1 AACCCTA
*
3452 AGCCCT-
1 AACCCTA
*
3458 AAGCCT-
1 AACCCTA
*
3464 AAGCCTA
1 AACCCTA
*
3471 AGCCCTA
1 AACCCTA
*
3478 AGCCCTA
1 AACCCTA
*
3485 AGCCCTA
1 AACCCTA
*
3492 AGCCCCCTA
1 A--ACCCTA
*
3501 AGCCCT-
1 AACCCTA
*
3507 AAGCCTA
1 AACCCTA
*
3514 AGCCCTA
1 AACCCTA
*
3521 AGCCCTA
1 AACCCTA
*
3528 AGCCCT-
1 AACCCTA
*
3534 AAGCCTA
1 AACCCTA
*
3541 AGCCCT-
1 AACCCTA
*
3547 AAGCCTA
1 AACCCTA
*
3554 AGCCCTA
1 AACCCTA
*
3561 AGCCCTA
1 AACCCTA
*
3568 AGCCCTA
1 AACCCTA
*
3575 AGCCCTA
1 AACCCTA
*
3582 AGCCCTA
1 AACCCTA
*
3589 AGCCCTA
1 AACCCTA
*
3596 AGCCCT-
1 AACCCTA
*
3602 AAGCCTA
1 AACCCTA
*
3609 AGCCCTA
1 AACCCTA
*
3616 AGCCCTA
1 AACCCTA
*
3623 AGCCCTA
1 AACCCTA
*
3630 AGCCCT-
1 AACCCTA
*
3636 AGCCCTA
1 AACCCTA
*
3643 AGCCCT-
1 AACCCTA
*
3649 AAGCCT-
1 AACCCTA
*
3655 AAGCCTA
1 AACCCTA
*
3662 AGCCCTA
1 AACCCTA
*
3669 AGCCCTA
1 AACCCTA
*
3676 AGCCCTA
1 AACCCTA
*
3683 AGCCCTA
1 AACCCTA
*
3690 AGCCCTCTA
1 A-ACC-CTA
*
3699 AGCCCTA
1 AACCCTA
*
3706 AGCCCTA
1 AACCCTA
*
3713 AGCCCT-
1 AACCCTA
*
3719 AAGCCTA
1 AACCCTA
3726 AGAGCCCTA
1 A-A-CCCTA
*
3735 AGCCCT-
1 AACCCTA
*
3741 AAGCCTA
1 AACCCTA
*
3748 AGCCCT-
1 AACCCTA
*
3754 AAGCCTA
1 AACCCTA
*
3761 AGCCCTA
1 AACCCTA
*
3768 AGCCCCTA
1 A-ACCCTA
*
3776 AGCCCT-
1 AACCCTA
*
3782 AAGCCTA
1 AACCCTA
*
3789 AGCCCTA
1 AACCCTA
*
3796 AGCCCTA
1 AACCCTA
*
3803 AGCCCTA
1 AACCCTA
*
3810 AGCCCTA
1 AACCCTA
*
3817 AGCCCT-
1 AACCCTA
*
3823 AAGCCTA
1 AACCCTA
*
3830 AGCCCTA
1 AACCCTA
*
3837 AGCCCTA
1 AACCCTA
*
3844 AGCCCTA
1 AACCCTA
*
3851 AGCCCTA
1 AACCCTA
*
3858 AGCCCTA
1 AACCCTA
*
3865 AGCCCT-
1 AACCCTA
3871 AACCCTA
1 AACCCTA
*
3878 AGCCCT-
1 AACCCTA
3884 AA-CCTA
1 AACCCTA
*
3890 AGCCCT-
1 AACCCTA
3896 AACCCTA
1 AACCCTA
3903 AACCCTA
1 AACCCTA
3910 AACCCT-
1 AACCCTA
3916 AACCCTA
1 AACCCTA
3923 AACCCTA
1 AACCCTA
3930 AACCCTA
1 AACCCTA
3937 AACCCTA
1 AACCCTA
3944 AA-CCTA
1 AACCCTA
3950 AACCCTA
1 AACCCTA
3957 AACCCTA
1 AACCCTA
3964 AA-CCTA
1 AACCCTA
3970 AACCCTA
1 AACCCTA
3977 AACCCTA
1 AACCCTA
3984 AA-CCT-
1 AACCCTA
3989 AACCCT-
1 AACCCTA
3995 -ACCCTA
1 AACCCTA
4001 AACCCTA
1 AACCCTA
4008 AACCCT-
1 AACCCTA
4014 AA-CCTA
1 AACCCTA
4020 AACCCTA
1 AACCCTA
4027 AACCCTA
1 AACCCTA
4034 AACCCTA
1 AACCCTA
4041 AACCCTA
1 AACCCTA
4048 AACCCTA
1 AACCCTA
4055 AACCCT-
1 AACCCTA
4061 AACCCT-
1 AACCCTA
4067 AACCCTA
1 AACCCTA
4074 AACCCTA
1 AACCCTA
4081 AACCCCT-
1 AA-CCCTA
4088 AACCCTA
1 AACCCTA
4095 AACCCTA
1 AACCCTA
4102 AACCCTA
1 AACCCTA
4109 AACCCT-
1 AACCCTA
4115 -ACCCTA
1 AACCCTA
4121 AACCCCCT-
1 AA--CCCTA
4129 AACCCTA
1 AACCCTA
4136 AACCCT-
1 AACCCTA
4142 AACCCT-
1 AACCCTA
4148 --CCCTA
1 AACCCTA
4153 AA-CCTA
1 AACCCTA
4159 AACCCTA
1 AACCCTA
4166 AA-CCTA
1 AACCCTA
4172 AACCCTA
1 AACCCTA
4179 AACCCTA
1 AACCCTA
4186 AACCCTA
1 AACCCTA
4193 AACCCTA
1 AACCCTA
**
4200 AACCCCCC
1 AA-CCCTA
**
4208 TCCCCTA
1 AACCCTA
4215 AACCCTA
1 AACCCTA
4222 AACCCTA
1 AACCCTA
4229 AACCCT-
1 AACCCTA
4235 AACCC-A
1 AACCCTA
4241 AACCCTA
1 AACCCTA
4248 AACCCTA
1 AACCCTA
4255 AACCCTA
1 AACCCTA
4262 AACCCTA
1 AACCCTA
4269 AACCCTA
1 AACCCTA
4276 AACCCT-
1 AACCCTA
4282 AACCCTA
1 AACCCTA
4289 AACCCTA
1 AACCCTA
4296 AA-CCT-
1 AACCCTA
4301 AACCCT-
1 AACCCTA
4307 AACCCTA
1 AACCCTA
4314 AACCCTA
1 AACCCTA
4321 AACCCTA
1 AACCCTA
4328 AACCCTA
1 AACCCTA
4335 AACCCTA
1 AACCCTA
4342 AACCCTA
1 AACCCTA
4349 AACCCT-
1 AACCCTA
4355 AACCCTA
1 AACCCTA
4362 AACCCTA
1 AACCCTA
4369 AACCCTA
1 AACCCTA
4376 AACCCTA
1 AACCCTA
4383 AACCCTA
1 AACCCTA
4390 AA-CCT-
1 AACCCTA
4395 AACCCTA
1 AACCCTA
4402 AACCCTA
1 AACCCTA
4409 AACCCTA
1 AACCCTA
4416 AA-CCT-
1 AACCCTA
4421 AACCCTCCCA
1 AACCCT---A
4431 AACCCTA
1 AACCCTA
4438 AACCCCTA
1 AA-CCCTA
4446 AACCCTA
1 AACCCTA
4453 AACCCTA
1 AACCCTA
4460 AACCCT-
1 AACCCTA
*
4466 -CCCCTA
1 AACCCTA
4472 AA-CCTA
1 AACCCTA
4478 AACCCTA
1 AACCCTA
4485 AACCCTA
1 AACCCTA
4492 AACCCTA
1 AACCCTA
4499 AACCCTA
1 AACCCTA
4506 AACCC-A
1 AACCCTA
4512 AACCCTA
1 AACCCTA
4519 AACCCT-
1 AACCCTA
4525 AACCCTA
1 AACCCTA
4532 AACCCTA
1 AACCCTA
4539 AACCCTA
1 AACCCTA
4546 AACCCT-
1 AACCCTA
4552 AACCCTA
1 AACCCTA
4559 AACCCTA
1 AACCCTA
4566 AACCCTA
1 AACCCTA
4573 AACCCT-
1 AACCCTA
4579 AACCCTA
1 AACCCTA
4586 AACCCTA
1 AACCCTA
4593 AACCCTA
1 AACCCTA
4600 AACCC--
1 AACCCTA
*
4605 -CCCCTA
1 AACCCTA
4611 AACCC--
1 AACCCTA
4616 AACCCTA
1 AACCCTA
4623 AACCCTA
1 AACCCTA
4630 AACCCTA
1 AACCCTA
4637 AACCCT-
1 AACCCTA
4643 AA-CCTA
1 AACCCTA
4649 AACCCTA
1 AACCCTA
4656 AACCCTA
1 AACCCTA
4663 AACCCTA
1 AACCCTA
4670 AACCCTA
1 AACCCTA
4677 AACCCTA
1 AACCCTA
4684 AACCCTA
1 AACCCTA
4691 AACCCT-
1 AACCCTA
4697 AACCCTA
1 AACCCTA
4704 AACCCTA
1 AACCCTA
4711 AACCCTA
1 AACCCTA
4718 AA-CCTA
1 AACCCTA
4724 AACCCT-
1 AACCCTA
4730 AACCCTA
1 AACCCTA
4737 AACCCTA
1 AACCCTA
4744 AACCCTA
1 AACCCTA
4751 AACCCTA
1 AACCCTA
4758 AACCCTA
1 AACCCTA
4765 AACCCTA
1 AACCCTA
*
4772 AACCCTC
1 AACCCTA
4779 AACCCTA
1 AACCCTA
4786 AACCCT-
1 AACCCTA
4792 AACCCTA
1 AACCCTA
4799 AACCCTA
1 AACCCTA
4806 AACCCTA
1 AACCCTA
4813 AACCCTA
1 AACCCTA
4820 AACCCT-
1 AACCCTA
4826 AA-CCTA
1 AACCCTA
4832 AACCCTA
1 AACCCTA
4839 AACCCTA
1 AACCCTA
4846 AACCCTA
1 AACCCTA
4853 AACCCTA
1 AACCCTA
4860 AACCCTA
1 AACCCTA
4867 AACCCTA
1 AACCCTA
4874 AACCCTA
1 AACCCTA
4881 AACCCTA
1 AACCCTA
4888 AA-CCTA
1 AACCCTA
4894 AACCCTA
1 AACCCTA
4901 AACCCTA
1 AACCCTA
4908 AACCCTA
1 AACCCTA
4915 AACCCTA
1 AACCCTA
4922 AACCCTA
1 AACCCTA
4929 AACCCTA
1 AACCCTA
4936 AACCCTA
1 AACCCTA
4943 AACCCTA
1 AACCCTA
4950 AACCCTA
1 AACCCTA
4957 AACCCTA
1 AACCCTA
4964 AACCCTA
1 AACCCTA
4971 AACCCT-
1 AACCCTA
4977 AACCCTA
1 AACCCTA
4984 AACCCTA
1 AACCCTA
4991 AACCCT-
1 AACCCTA
4997 AACCCTA
1 AACCCTA
5004 AACCCTA
1 AACCCTA
5011 AACCCTA
1 AACCCTA
5018 AACCCTA
1 AACCCTA
5025 AACCCTA
1 AACCCTA
5032 AACCCTA
1 AACCCTA
5039 AACCCT-
1 AACCCTA
5045 AACCCTA
1 AACCCTA
5052 AACCCTA
1 AACCCTA
5059 AACCCTA
1 AACCCTA
*
5066 AAACCTA
1 AACCCTA
5073 AACCCTA
1 AACCCTA
5080 AACCCTA
1 AACCCTA
5087 AA-CCTA
1 AACCCTA
5093 AACCCTA
1 AACCCTA
5100 AACCCTA
1 AACCCTA
5107 AACCCT-
1 AACCCTA
5113 AACCCTA
1 AACCCTA
5120 A
1 A
5121 CCCGAACCCC
Statistics
Matches: 4668, Mismatches: 165, Indels: 556
0.87 0.03 0.10
Matches are distributed among these distances:
4 27 0.01
5 145 0.03
6 1644 0.35
7 2732 0.59
8 63 0.01
9 27 0.01
10 30 0.01
ACGTcount: A:0.37, C:0.45, G:0.03, T:0.15
Consensus pattern (7 bp):
AACCCTA
Found at i:5131 original size:7 final size:7
Alignment explanation
Indices: 5121--5196 Score: 88
Period size: 7 Copynumber: 11.3 Consensus size: 7
5111 CTAACCCTAA
5121 CCCGAAC
1 CCCGAAC
5128 CCCGAAC
1 CCCGAAC
5135 CCCGAA-
1 CCCGAAC
5141 CCCGAA-
1 CCCGAAC
5147 CCCG-AC
1 CCCGAAC
5153 CCCGAAC
1 CCCGAAC
5160 CCCGGAAC
1 CCC-GAAC
5168 CCCGAA-
1 CCCGAAC
*
5174 CCCGGAC
1 CCCGAAC
*
5181 CCCGGAC
1 CCCGAAC
*
5188 CCCGGAC
1 CCCGAAC
5195 CC
1 CC
5197 GGACCCCGGA
Statistics
Matches: 64, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
5 1 0.02
6 19 0.30
7 37 0.58
8 7 0.11
ACGTcount: A:0.24, C:0.57, G:0.20, T:0.00
Consensus pattern (7 bp):
CCCGAAC
Found at i:5135 original size:13 final size:13
Alignment explanation
Indices: 5119--5189 Score: 83
Period size: 13 Copynumber: 5.4 Consensus size: 13
5109 CCCTAACCCT
5119 AACCCGAACCCCG
1 AACCCGAACCCCG
5132 AACCCCGAA-CCCG
1 AA-CCCGAACCCCG
5145 AACCCG-ACCCCG
1 AACCCGAACCCCG
5157 AACCCCGGAACCCCG
1 AA-CCC-GAACCCCG
*
5172 AACCCGGACCCCG
1 AACCCGAACCCCG
*
5185 GACCC
1 AACCC
5190 CGGACCCGGA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
11 1 0.02
12 10 0.20
13 22 0.43
14 10 0.20
15 8 0.16
ACGTcount: A:0.27, C:0.55, G:0.18, T:0.00
Consensus pattern (13 bp):
AACCCGAACCCCG
Found at i:5144 original size:6 final size:6
Alignment explanation
Indices: 5107--5182 Score: 71
Period size: 6 Copynumber: 11.8 Consensus size: 6
5097 CTAAACCCTA
* * *
5107 AACCCT AACCCT AACCCG AACCCCG AACCCCG AACCCG AACCCG ACCCCG
1 AACCCG AACCCG AACCCG AA-CCCG AA-CCCG AACCCG AACCCG AACCCG
*
5157 AACCCCGG AACCCCG AACCCG GACCC
1 AA-CCC-G AA-CCCG AACCCG AACCC
5183 CGGACCCCGG
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
6 37 0.59
7 19 0.30
8 7 0.11
ACGTcount: A:0.29, C:0.54, G:0.14, T:0.03
Consensus pattern (6 bp):
AACCCG
Found at i:5204 original size:7 final size:7
Alignment explanation
Indices: 5121--5259 Score: 85
Period size: 7 Copynumber: 20.3 Consensus size: 7
5111 CTAACCCTAA
*
5121 CCCGAAC
1 CCCGGAC
*
5128 CCCGAAC
1 CCCGGAC
*
5135 CCC-GAA
1 CCCGGAC
*
5141 CCC-GAA
1 CCCGGAC
5147 CCC-GAC
1 CCCGGAC
*
5153 CCCGAAC
1 CCCGGAC
5160 CCCGGAAC
1 CCCGG-AC
*
5168 CCC-GAA
1 CCCGGAC
5174 CCCGGAC
1 CCCGGAC
5181 CCCGGAC
1 CCCGGAC
5188 CCCGGA-
1 CCCGGAC
5194 CCCGGAC
1 CCCGGAC
5201 CCCGGAC
1 CCCGGAC
*
5208 CTGACCTGAC
1 C---CCGGAC
*
5218 CCCTGA-
1 CCCGGAC
*
5224 CCCTGAC
1 CCCGGAC
*
5231 CCCTGAC
1 CCCGGAC
*
5238 CCCTGAC
1 CCCGGAC
*
5245 CCCTGAC
1 CCCGGAC
5252 CCC-GAC
1 CCCGGAC
5258 CC
1 CC
5260 TGACCCGAGC
Statistics
Matches: 116, Mismatches: 8, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
6 36 0.31
7 69 0.59
8 5 0.04
10 6 0.05
ACGTcount: A:0.20, C:0.55, G:0.19, T:0.05
Consensus pattern (7 bp):
CCCGGAC
Found at i:5205 original size:20 final size:20
Alignment explanation
Indices: 5121--5208 Score: 97
Period size: 20 Copynumber: 4.4 Consensus size: 20
5111 CTAACCCTAA
* * *
5121 CCCGAACCCCGAACCCCGAA
1 CCCGGACCCCGAACCCGGAC
* * *
5141 CCC-GAACCCGACCCCGAAC
1 CCCGGACCCCGAACCCGGAC
5160 CCCGGAACCCCGAACCCGGAC
1 CCCGG-ACCCCGAACCCGGAC
*
5181 CCCGGACCCCGGACCCGGAC
1 CCCGGACCCCGAACCCGGAC
5201 CCCGGACC
1 CCCGGACC
5209 TGACCTGACC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
19 13 0.23
20 26 0.46
21 17 0.30
ACGTcount: A:0.23, C:0.56, G:0.22, T:0.00
Consensus pattern (20 bp):
CCCGGACCCCGAACCCGGAC
Found at i:5230 original size:13 final size:13
Alignment explanation
Indices: 5207--5265 Score: 86
Period size: 13 Copynumber: 4.6 Consensus size: 13
5197 GGACCCCGGA
5207 CCTGA-CCTGACC
1 CCTGACCCTGACC
5219 CCTGACCCTGACC
1 CCTGACCCTGACC
5232 CCTGACCCCTGACC
1 CCTGA-CCCTGACC
*
5246 CCTGACCCCGA-C
1 CCTGACCCTGACC
5258 CCTGACCC
1 CCTGACCC
5266 GAGCCCCGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
12 14 0.32
13 17 0.39
14 13 0.30
ACGTcount: A:0.15, C:0.56, G:0.15, T:0.14
Consensus pattern (13 bp):
CCTGACCCTGACC
Found at i:5237 original size:20 final size:20
Alignment explanation
Indices: 5212--5265 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
5202 CCGGACCTGA
5212 CCTGACCCCTGACCCTGACC
1 CCTGACCCCTGACCCTGACC
5232 CCTGACCCCTGACCCCTGACC
1 CCTGACCCCTGA-CCCTGACC
5253 CC-GA-CCCTGACCC
1 CCTGACCCCTGACCC
5266 GAGCCCCGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.09
19 6 0.18
20 14 0.42
21 10 0.30
ACGTcount: A:0.15, C:0.57, G:0.15, T:0.13
Consensus pattern (20 bp):
CCTGACCCCTGACCCTGACC
Found at i:5286 original size:8 final size:7
Alignment explanation
Indices: 5263--5330 Score: 67
Period size: 7 Copynumber: 10.4 Consensus size: 7
5253 CCGACCCTGA
5263 CCCGAGC
1 CCCGAGC
5270 CCCGAGC
1 CCCGAGC
5277 CCCGGAG-
1 CCC-GAGC
5284 CCCGAG-
1 CCCGAGC
5290 CCCGAGC
1 CCCGAGC
*
5297 CCC--CC
1 CCCGAGC
5302 CCCGAG-
1 CCCGAGC
5308 CCCGAG-
1 CCCGAGC
5314 CCCGAGC
1 CCCGAGC
*
5321 CCCAAGC
1 CCCGAGC
5328 CCC
1 CCC
5331 AACAGTGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
5 4 0.08
6 21 0.40
7 25 0.47
8 3 0.06
ACGTcount: A:0.15, C:0.59, G:0.26, T:0.00
Consensus pattern (7 bp):
CCCGAGC
Found at i:5292 original size:6 final size:6
Alignment explanation
Indices: 5263--5322 Score: 66
Period size: 6 Copynumber: 9.5 Consensus size: 6
5253 CCGACCCTGA
***
5263 CCCGAG CCCCGAG CCCCGGAG CCCGAG CCCGAG CCCCCC CCCGAG CCCGAG
1 CCCGAG -CCCGAG -CCC-GAG CCCGAG CCCGAG CCCGAG CCCGAG CCCGAG
5314 CCCGAG CCC
1 CCCGAG CCC
5323 CAAGCCCCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
6 30 0.65
7 13 0.28
8 3 0.07
ACGTcount: A:0.13, C:0.58, G:0.28, T:0.00
Consensus pattern (6 bp):
CCCGAG
Found at i:5308 original size:24 final size:25
Alignment explanation
Indices: 5251--5323 Score: 89
Period size: 24 Copynumber: 2.9 Consensus size: 25
5241 TGACCCCTGA
5251 CCCCGA-CCCTGA-CCCGAGCCCCGAGC
1 CCCCGAGCCC-GAGCCCGAGCCCC--GC
*
5277 CCCGGAGCCCGAGCCCGAGCCCC-C
1 CCCCGAGCCCGAGCCCGAGCCCCGC
5301 CCCCGAGCCCGAGCCCGAGCCCC
1 CCCCGAGCCCGAGCCCGAGCCCC
5324 AAGCCCCAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
24 23 0.53
26 7 0.16
27 13 0.30
ACGTcount: A:0.14, C:0.59, G:0.26, T:0.01
Consensus pattern (25 bp):
CCCCGAGCCCGAGCCCGAGCCCCGC
Found at i:7063 original size:214 final size:215
Alignment explanation
Indices: 6694--7125 Score: 740
Period size: 214 Copynumber: 2.0 Consensus size: 215
6684 TATCACAGTA
* * *
6694 TATTCGCATGCCATAACAATTCTCAGTTTTTCGTTTATTTTAGAGTGATTTTCTAATGGTAGTGG
1 TATTCGCATGCCATAACAATTCGCAGTTTCTCGTTTATTTTAGAGTGATTGTCTAATGGTAGTGG
6759 CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
66 CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
*
6824 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGC-ATGAATTTCCGGAAATGATCTT
131 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCAATGAATTTCCAGAAATGATCTT
*
6888 ACTATGAAGCTTTGTTCTAC
196 ACTATGAAGCTTTGGTCTAC
6908 TATTCGCATGCCATAACAATTCGCAGTTTCTCGTTTATTTTAGAGTGATTGTCTAATGGTAGTGG
1 TATTCGCATGCCATAACAATTCGCAGTTTCTCGTTTATTTTAGAGTGATTGTCTAATGGTAGTGG
* *
6973 CTGTAAGATGTGCCAGTAATTCTCAGTTTGAACTTTGTTATGAAGAACTATTCGAACGTTGATCA
66 CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
* * *
7038 TAGTTGTATCTAGTGGCTAATATATTTTGTTAGTATGGCAGCATGAATGAATTTCCAGAAATGAT
131 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGC---AATGAATTTCCAGAAATGAT
7103 CTTACTATGAAGCTTTGGTCTAC
193 CTTACTATGAAGCTTTGGTCTAC
7126 CGTTCTGCCT
Statistics
Matches: 204, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
214 164 0.80
218 40 0.20
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.38
Consensus pattern (215 bp):
TATTCGCATGCCATAACAATTCGCAGTTTCTCGTTTATTTTAGAGTGATTGTCTAATGGTAGTGG
CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCAATGAATTTCCAGAAATGATCTT
ACTATGAAGCTTTGGTCTAC
Found at i:9355 original size:21 final size:21
Alignment explanation
Indices: 9331--9391 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
9321 AACTTTGAAA
9331 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
9352 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
9366 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
9387 AAATG
1 AAATG
9392 TTTATTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:9369 original size:35 final size:36
Alignment explanation
Indices: 9296--9424 Score: 167
Period size: 35 Copynumber: 3.6 Consensus size: 36
9286 TGAAAGTATT
***
9296 AAAATGGTTTTCAAA-TTTGGT-AAT-CAACTTTGAA
1 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG-A
9330 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG-
1 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTGA
*
9365 AAAATGGTTTTCAAAGTTTGGTAAATGTTTATTTGA
1 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTGA
*
9401 AAAATAGTTTTTCAAAGTTTGGTA
1 AAAAT-GGTTTTCAAAGTTTGGTA
9425 GATTTGTTGA
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
34 15 0.18
35 40 0.47
36 8 0.09
37 22 0.26
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (36 bp):
AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTGA
Found at i:9787 original size:7 final size:7
Alignment explanation
Indices: 9779--9860 Score: 137
Period size: 7 Copynumber: 11.7 Consensus size: 7
9769 CAACAACTGA
*
9779 ACCCTGA
1 ACCCTGG
9786 ACCCTGG
1 ACCCTGG
9793 ACCCTGG
1 ACCCTGG
9800 ACCCTGG
1 ACCCTGG
9807 ACCCTGG
1 ACCCTGG
9814 ACCCTGG
1 ACCCTGG
9821 ACCCTGG
1 ACCCTGG
9828 ACCCTGG
1 ACCCTGG
9835 ACCCTGG
1 ACCCTGG
*
9842 ACCCTGA
1 ACCCTGG
*
9849 ACCCTGA
1 ACCCTGG
9856 ACCCT
1 ACCCT
9861 AAACCCTGAC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 73 1.00
ACGTcount: A:0.18, C:0.44, G:0.23, T:0.15
Consensus pattern (7 bp):
ACCCTGG
Found at i:9865 original size:7 final size:7
Alignment explanation
Indices: 9775--9869 Score: 109
Period size: 7 Copynumber: 13.6 Consensus size: 7
9765 TTCCCAACAA
9775 CTGAACC
1 CTGAACC
9782 CTGAACC
1 CTGAACC
*
9789 CTGGACC
1 CTGAACC
*
9796 CTGGACC
1 CTGAACC
*
9803 CTGGACC
1 CTGAACC
*
9810 CTGGACC
1 CTGAACC
*
9817 CTGGACC
1 CTGAACC
*
9824 CTGGACC
1 CTGAACC
*
9831 CTGGACC
1 CTGAACC
*
9838 CTGGACC
1 CTGAACC
9845 CTGAACC
1 CTGAACC
9852 CTGAACC
1 CTGAACC
*
9859 CTAAACC
1 CTGAACC
9866 CTGA
1 CTGA
9870 CAGTGAAAGA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 84 1.00
ACGTcount: A:0.21, C:0.42, G:0.22, T:0.15
Consensus pattern (7 bp):
CTGAACC
Found at i:11593 original size:214 final size:215
Alignment explanation
Indices: 11224--11655 Score: 731
Period size: 214 Copynumber: 2.0 Consensus size: 215
11214 TATCACAGTA
* * * *
11224 TATTCGCATGCCATAACAATTCTCAGTTTTTCGTTTATTTTAGAGTGATTTTCTAATGGTAGTGG
1 TATTCGCATGCCATAACAATTCGCAGTTTCTCATTTATTTTAGAGTGATTGTCTAATGGTAGTGG
11289 CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
66 CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
*
11354 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGC-ATGAATTTCCGGAAATGATCTT
131 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCAATGAATTTCCAGAAATGATCTT
*
11418 ACTATGAAGCTTTGTTCTAC
196 ACTATGAAGCTTTGGTCTAC
11438 TATTCGCATGCCATAACAATTCGCAGTTTCTCATTTATTTTAGAGTGATTGTCTAATGGTAGTGG
1 TATTCGCATGCCATAACAATTCGCAGTTTCTCATTTATTTTAGAGTGATTGTCTAATGGTAGTGG
* *
11503 CTGTAAGATGTGCCAGTAATTCTCAGTTTGAACTTTGTTATGAAGAACTATTCGAACGTTGATCA
66 CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
* * *
11568 TAGTTGTATCTAGTGGCTAATATATTTTGTTAGTATGGCAGCATGAATGAATTTCCAGAAATGAT
131 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGC---AATGAATTTCCAGAAATGAT
11633 CTTACTATGAAGCTTTGGTCTAC
193 CTTACTATGAAGCTTTGGTCTAC
11656 CGTTCTGCCT
Statistics
Matches: 203, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
214 163 0.80
218 40 0.20
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (215 bp):
TATTCGCATGCCATAACAATTCGCAGTTTCTCATTTATTTTAGAGTGATTGTCTAATGGTAGTGG
CTGTAAGATGTGCCAGTAATTCTCAGTGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCAATGAATTTCCAGAAATGATCTT
ACTATGAAGCTTTGGTCTAC
Found at i:13882 original size:21 final size:20
Alignment explanation
Indices: 13858--13921 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
13848 AACTTTGAAA
13858 AAATAGTTTTCAAAGTTTGGT
1 AAAT-GTTTTCAAAGTTTGGT
*
13879 AAATG-TTTC----TTT-GA
1 AAATGTTTTCAAAGTTTGGT
13893 AAATGGTTTTCAAAGTTTGGT
1 AAAT-GTTTTCAAAGTTTGGT
13914 AAATGTTT
1 AAATGTTT
13922 CTTTGAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 4 0.12
16 4 0.12
19 4 0.12
20 8 0.24
21 9 0.26
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (20 bp):
AAATGTTTTCAAAGTTTGGT
Found at i:13964 original size:36 final size:36
Alignment explanation
Indices: 13850--13968 Score: 170
Period size: 35 Copynumber: 3.3 Consensus size: 36
13840 TGGTAATCAA
13850 CTTTGAAAAAATAGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATAGTTTTCAAAGTTTGGTAAATGTTT
*
13887 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATAGTTTTCAAAGTTTGGTAAATGTTT
* *
13922 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATATTT
1 CTTTGAAAAATAG-TTTTCAAAGTTTGGTAAATGTTT
*
13959 -GTTGAAAAAT
1 CTTTGAAAAAT
13969 GATAATGGGA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
35 34 0.45
36 15 0.20
37 26 0.35
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.44
Consensus pattern (36 bp):
CTTTGAAAAATAGTTTTCAAAGTTTGGTAAATGTTT
Found at i:13969 original size:72 final size:69
Alignment explanation
Indices: 13823--13966 Score: 184
Period size: 72 Copynumber: 2.1 Consensus size: 69
13813 TGAAAGTATT
*
13823 AAAATGGTTTTCAAATTTGGTAATCAACTTTGAAAAAATAGTTTTCAAAGTTTGGTAAATGTTTC
1 AAAATGGTTTTCAAATTTGGTAATCAACTTTGAAAAAATAGTTTTCAAAGTTTGGTAAATATTTC
*
13888 TTTG
66 GTTG
*** *
13892 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG-AAAAATAGTTTTTCAAAGTTTGGTAGATA
1 AAAATGGTTTTCAAA-TTTGGT-AAT-CAACTTTGAAAAAATAG-TTTTCAAAGTTTGGTAAATA
13956 TTT-GTTG
62 TTTCGTTG
13963 AAAA
1 AAAA
13967 ATGATAATGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
69 15 0.23
70 6 0.09
71 18 0.28
72 26 0.40
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (69 bp):
AAAATGGTTTTCAAATTTGGTAATCAACTTTGAAAAAATAGTTTTCAAAGTTTGGTAAATATTTC
GTTG
Found at i:14386 original size:16 final size:17
Alignment explanation
Indices: 14365--14400 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
14355 TTACTATTCA
*
14365 TGTGAATAGT-GAATTT
1 TGTGAATAGTAAAATTT
14381 TGTGAATAGTAAAATTT
1 TGTGAATAGTAAAATTT
14398 TGT
1 TGT
14401 CGGCGATACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (17 bp):
TGTGAATAGTAAAATTT
Found at i:18459 original size:20 final size:20
Alignment explanation
Indices: 18436--18494 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
18426 CAACTTTGAA
18436 AAATGGTTTTCAAGTTTGGT
1 AAATGGTTTTCAAGTTTGGT
*
18456 AAAT-G-TTTC---TTT-GA
1 AAATGGTTTTCAAGTTTGGT
18470 AAATGGTTTTCAAAG-TTGGT
1 AAATGGTTTTC-AAGTTTGGT
18490 AAATG
1 AAATG
18495 TTTCTTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
14 5 0.17
15 4 0.13
16 4 0.13
18 4 0.13
19 3 0.10
20 10 0.33
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.42
Consensus pattern (20 bp):
AAATGGTTTTCAAGTTTGGT
Found at i:18486 original size:35 final size:35
Alignment explanation
Indices: 18402--18542 Score: 161
Period size: 34 Copynumber: 4.2 Consensus size: 35
18392 TGAAAGTATT
****
18402 AAAATGGTTTTCAAGTTTGGT-AA-CCAACTTTGA
1 AAAATGGTTTTCAAGTTTGGTAAATGTTTCTTTGA
18435 AAAATGGTTTTCAAGTTTGGTAAATGTTTCTTTG-
1 AAAATGGTTTTCAAGTTTGGTAAATGTTTCTTTGA
18469 AAAATGGTTTTCAAAG-TTGGTAAATGTTTCTTTGA
1 AAAATGGTTTTC-AAGTTTGGTAAATGTTTCTTTGA
* *
18504 AAAATAGTTTTTCAAGTTTGGT--ATGTTT-GTTGA
1 AAAAT-GGTTTTCAAGTTTGGTAAATGTTTCTTTGA
18537 AAAATG
1 AAAATG
18543 ATAATAGGAT
Statistics
Matches: 96, Mismatches: 6, Indels: 13
0.83 0.05 0.11
Matches are distributed among these distances:
32 1 0.01
33 30 0.31
34 38 0.40
35 16 0.17
36 11 0.11
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (35 bp):
AAAATGGTTTTCAAGTTTGGTAAATGTTTCTTTGA
Found at i:19360 original size:22 final size:21
Alignment explanation
Indices: 19334--19395 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 21
19324 TATTATAAAG
19334 CATAAACCTTAAATCACAACC
1 CATAAACCTTAAATCACAACC
* * *
19355 C-TATAACCTCTAAGTCATAAAC
1 CATA-AACCT-TAAATCACAACC
*
19377 CATAAACC-TAAATCCCAAC
1 CATAAACCTTAAATCACAAC
19396 TTAGAGTTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
20 9 0.29
21 6 0.19
22 14 0.45
23 2 0.06
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (21 bp):
CATAAACCTTAAATCACAACC
Found at i:21978 original size:60 final size:60
Alignment explanation
Indices: 21882--21995 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 60
21872 GCGTAGTTAA
* * * * *
21882 AAAACCTAATTATCGATGTAAGTAATCGTTGTTACTTAGGGAAATTTAGGTAATTGCATT
1 AAAACCTAATTACCGATATAAGTAATAGTTGGTACTTAGGAAAATTTAGGTAATTGCATT
* *
21942 AAAACCTAATTACCGATATAGGTAATATTTGGTACTTAGGAAAATTTAGGTAAT
1 AAAACCTAATTACCGATATAAGTAATAGTTGGTACTTAGGAAAATTTAGGTAAT
21996 CGTTGTTCGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.35
Consensus pattern (60 bp):
AAAACCTAATTACCGATATAAGTAATAGTTGGTACTTAGGAAAATTTAGGTAATTGCATT
Found at i:25821 original size:2 final size:2
Alignment explanation
Indices: 25814--25843 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
25804 GTGTAAATAG
25814 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25844 TCACCTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31767 original size:3 final size:3
Alignment explanation
Indices: 31754--31829 Score: 80
Period size: 3 Copynumber: 24.0 Consensus size: 3
31744 GTAGTAGTAG
* * * *
31754 TAA TAA AAA TAA TAA TAA TAA TAAA TAA TAG TGA TAA TTAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA -TAA TAA TAA
31801 TAA TAA TAAA TAA TAA TAA TAA CTAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA -TAA TAA
31830 ATTCCAGGCA
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
3 49 0.80
4 12 0.20
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:31782 original size:13 final size:13
Alignment explanation
Indices: 31754--31831 Score: 72
Period size: 13 Copynumber: 6.1 Consensus size: 13
31744 GTAGTAGTAG
*
31754 TAATAAAAAT-AA
1 TAATAATAATAAA
31766 TAATAATAATAAA
1 TAATAATAATAAA
* * *
31779 TAATAGTGATAAT
1 TAATAATAATAAA
*
31792 TAATAAT-ATTAA
1 TAATAATAATAAA
31804 TAATAAATAAT-AA
1 TAAT-AATAATAAA
31817 TAATAACTAATAAA
1 TAATAA-TAATAAA
31831 T
1 T
31832 TCCAGGCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
12 18 0.33
13 31 0.57
14 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:31805 original size:32 final size:32
Alignment explanation
Indices: 31761--31829 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
31751 TAGTAATAAA
* * *
31761 AATAATAATAATAATAAATAATAGTGATAATT
1 AATAATAATAATAATAAATAATAATAATAACT
*
31793 AATAATATTAATAATAAATAATAATAATAACT
1 AATAATAATAATAATAAATAATAATAATAACT
31825 AATAA
1 AATAA
31830 ATTCCAGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (32 bp):
AATAATAATAATAATAAATAATAATAATAACT
Found at i:31829 original size:16 final size:16
Alignment explanation
Indices: 31754--31822 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
31744 GTAGTAGTAG
31754 TAATAA-AAATAATAA
1 TAATAATAAATAATAA
*
31769 TAATAATAAATAATAG
1 TAATAATAAATAATAA
* * *
31785 TGATAATTAATAATAT
1 TAATAATAAATAATAA
31801 TAATAATAAATAATAA
1 TAATAATAAATAATAA
31817 TAATAA
1 TAATAA
31823 CTAATAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
15 6 0.13
16 40 0.87
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
TAATAATAAATAATAA
Found at i:32793 original size:2 final size:2
Alignment explanation
Indices: 32786--32816 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
32776 TCCCAATGAA
32786 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32817 AATAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45677 original size:4 final size:4
Alignment explanation
Indices: 45668--45708 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
45658 TCGAGTTCTC
*
45668 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TCAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
45709 ATACAAGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:53180 original size:40 final size:40
Alignment explanation
Indices: 53136--53214 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
53126 CTATTTTAAG
53136 CTTTGCTAAGTTTTACCCTCTCTTTAATAGCTTTGCTAAT
1 CTTTGCTAAGTTTTACCCTCTCTTTAATAGCTTTGCTAAT
53176 CTTTGCTAAGTTTTACCCTCTCTTTAATAGCTTTGCTAA
1 CTTTGCTAAGTTTTACCCTCTCTTTAATAGCTTTGCTAA
53215 GCTATCTCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.20, C:0.23, G:0.10, T:0.47
Consensus pattern (40 bp):
CTTTGCTAAGTTTTACCCTCTCTTTAATAGCTTTGCTAAT
Found at i:57063 original size:25 final size:22
Alignment explanation
Indices: 57031--57075 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
57021 TTATAAATAG
57031 AAAG-AAAAAAACAATACAACA
1 AAAGAAAAAAAACAATACAACA
57052 AAAGAAAAAAAACAATACAACA
1 AAAGAAAAAAAACAATACAACA
57074 AA
1 AA
57076 TAGTTTTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.78, C:0.13, G:0.04, T:0.04
Consensus pattern (22 bp):
AAAGAAAAAAAACAATACAACA
Found at i:58235 original size:57 final size:57
Alignment explanation
Indices: 58168--58279 Score: 188
Period size: 57 Copynumber: 2.0 Consensus size: 57
58158 TCCTTAATTT
* * *
58168 GCTTGCTAGTTGCTATAATAAAGTGGACTGGTGTGTGTTTTGTATGTAAATATTTCA
1 GCTTGCTAGTTGCTATAATAAAATGGACTGATGTGTGTTTTGTATGCAAATATTTCA
*
58225 GCTTGCTAGTTGCTATAATAAAATGGACTGATGTGTTTTTTGTATGCAAATATTT
1 GCTTGCTAGTTGCTATAATAAAATGGACTGATGTGTGTTTTGTATGCAAATATTT
58280 GACATCTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (57 bp):
GCTTGCTAGTTGCTATAATAAAATGGACTGATGTGTGTTTTGTATGCAAATATTTCA
Found at i:60479 original size:6 final size:7
Alignment explanation
Indices: 60462--60486 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60452 AATCTCTACT
60462 TTTTTTA
1 TTTTTTA
60469 TTTTTTA
1 TTTTTTA
60476 TTTTTTA
1 TTTTTTA
60483 TTTT
1 TTTT
60487 AAGTGAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:70033 original size:17 final size:18
Alignment explanation
Indices: 70013--70048 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70003 TTATTAGAAG
70013 ATTAAATT-TATTAAATT
1 ATTAAATTATATTAAATT
*
70030 ATTAAATTATTTTAAATT
1 ATTAAATTATATTAAATT
70048 A
1 A
70049 AGGTTAGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTAAATTATATTAAATT
Found at i:71039 original size:16 final size:16
Alignment explanation
Indices: 71018--71048 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71008 AAATTTAGTG
*
71018 AGCAAAACATGAATAT
1 AGCAAAAAATGAATAT
71034 AGCAAAAAATGAATA
1 AGCAAAAAATGAATA
71049 GTTTGGTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.10, G:0.13, T:0.16
Consensus pattern (16 bp):
AGCAAAAAATGAATAT
Found at i:73257 original size:16 final size:16
Alignment explanation
Indices: 73236--73269 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73226 AATATAAGTT
*
73236 AATATAATTTATTAAA
1 AATATAATTTATGAAA
73252 AATATAATTTATGAAA
1 AATATAATTTATGAAA
73268 AA
1 AA
73270 ATATTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
AATATAATTTATGAAA
Found at i:73271 original size:17 final size:16
Alignment explanation
Indices: 73236--73273 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73226 AATATAAGTT
*
73236 AATATAATTTATTAAA
1 AATATAATTTATAAAA
73252 AATATAATTTATGAAAA
1 AATATAATTTAT-AAAA
73269 AATAT
1 AATAT
73274 TTTTTCAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AATATAATTTATAAAA
Found at i:96659 original size:21 final size:22
Alignment explanation
Indices: 96619--96671 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
96609 TTTTTTAGAA
* *
96619 TGCTACAGGGGTATCGATACC-C
1 TGCTACA-GTGTACCGATACCTC
*
96641 TGCTACAGTGTACCGATACCTT
1 TGCTACAGTGTACCGATACCTC
96663 TGCTACAGT
1 TGCTACAGT
96672 AATTCCGTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 11 0.41
22 16 0.59
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (22 bp):
TGCTACAGTGTACCGATACCTC
Found at i:97307 original size:24 final size:24
Alignment explanation
Indices: 97275--97320 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
97265 CTCGTATAAA
97275 TGCACCGAAGTGCCACATAGAATT
1 TGCACCGAAGTGCCACATAGAATT
*
97299 TGCACCGAAGTGCCGCATAGAA
1 TGCACCGAAGTGCCACATAGAA
97321 ATACATCGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (24 bp):
TGCACCGAAGTGCCACATAGAATT
Found at i:104573 original size:22 final size:21
Alignment explanation
Indices: 104531--104570 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
104521 GAGTTTATTT
*
104531 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
104552 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
104571 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:109051 original size:19 final size:19
Alignment explanation
Indices: 109027--109063 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
109017 ATAACCAACA
*
109027 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
109046 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
109064 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:109154 original size:21 final size:21
Alignment explanation
Indices: 109108--109161 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
109098 GATTTTGACT
**
109108 ATCGCATTGCGATTTTCCAAA
1 ATCGCATTGCGATTTTAAAAA
* *
109129 TTCGCGTTGCGATTTTAAAAA
1 ATCGCATTGCGATTTTAAAAA
*
109150 ATCGCAATGCGA
1 ATCGCATTGCGA
109162 ATATGTAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (21 bp):
ATCGCATTGCGATTTTAAAAA
Found at i:109224 original size:20 final size:20
Alignment explanation
Indices: 109199--109260 Score: 97
Period size: 20 Copynumber: 3.1 Consensus size: 20
109189 TAATTGTAAT
*
109199 GCGATTTTGACTATCACAAC
1 GCGATTCTGACTATCACAAC
*
109219 GCGATTCTGACTATCGCAAC
1 GCGATTCTGACTATCACAAC
*
109239 GCGATTCTGACTGTCACAAC
1 GCGATTCTGACTATCACAAC
109259 GC
1 GC
109261 TTAATTTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (20 bp):
GCGATTCTGACTATCACAAC
Found at i:110106 original size:24 final size:24
Alignment explanation
Indices: 110079--110132 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
110069 GTATTCGAAA
110079 TTTGATCTTGGTCAATACTCGGAC
1 TTTGATCTTGGTCAATACTCGGAC
*
110103 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACTCGGAC
110127 TTTGAT
1 TTTGAT
110133 GATGTTTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACTCGGAC
Found at i:112417 original size:18 final size:18
Alignment explanation
Indices: 112394--112428 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
112384 AGAAAAAGGC
*
112394 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
112412 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
112429 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:112920 original size:94 final size:94
Alignment explanation
Indices: 112772--113003 Score: 290
Period size: 94 Copynumber: 2.5 Consensus size: 94
112762 GAATTTGACT
* * *
112772 ATCGCAACGCGAATTTGACTATCGCAATTCGAATTTGACTATCACAATGCGAATTTGACTATCGC
1 ATCGCAACGCGAATTTGACTATCGCAATGCGAATTTGACTATCGCAACGCGAATTTGACTATCGC
*
112837 AAC-ACAAATATGACTATCGCAACGCA-AAA
66 AACGA-AAATATAACTATCGCAACG-AGAAA
* * *
112866 ATTGCAACGCGAATTTGACTATCGCAATGCGAATTTGACTATCGCAACGTGAATTTGATTATCGC
1 ATCGCAACGCGAATTTGACTATCGCAATGCGAATTTGACTATCGCAACGCGAATTTGACTATCGC
*
112931 AACGAAAATTTAACTATCGCAACGAGAAA
66 AACGAAAATATAACTATCGCAACGAGAAA
* * * * * * *
112960 ATCGTAAAGCGTATTAGACTATCGCAACGTGAA-TTGACTTTCGC
1 ATCGCAACGCGAATTTGACTATCGCAATGCGAATTTGACTATCGC
113004 TTTGCGATTT
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
93 11 0.09
94 108 0.90
95 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (94 bp):
ATCGCAACGCGAATTTGACTATCGCAATGCGAATTTGACTATCGCAACGCGAATTTGACTATCGC
AACGAAAATATAACTATCGCAACGAGAAA
Found at i:112929 original size:74 final size:73
Alignment explanation
Indices: 112801--112938 Score: 213
Period size: 74 Copynumber: 1.9 Consensus size: 73
112791 TATCGCAATT
112801 CGAATTTGACTATCACAATGCGAATTTGACTATCGCAACACAAATATGACTATCGCAACGCAAAA
1 CGAATTTGACTATCACAATGCGAATTTGACTATCGCAACACAAATATGACTATCGCAACG-AAAA
112866 ATTGCAACG
65 ATTGCAACG
* *** * *
112875 CGAATTTGACTATCGCAATGCGAATTTGACTATCGCAACGTGAATTTGATTATCGCAACGAAAA
1 CGAATTTGACTATCACAATGCGAATTTGACTATCGCAACACAAATATGACTATCGCAACGAAAA
112939 TTTAACTATC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
73 4 0.07
74 54 0.93
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (73 bp):
CGAATTTGACTATCACAATGCGAATTTGACTATCGCAACACAAATATGACTATCGCAACGAAAAA
TTGCAACG
Found at i:112955 original size:20 final size:20
Alignment explanation
Indices: 112744--112954 Score: 227
Period size: 20 Copynumber: 10.8 Consensus size: 20
112734 TTACACATTC
* *
112744 ATTTGAATATCACAACGCGA
1 ATTTGACTATCGCAACGCGA
112764 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
**
112784 ATTTGACTATCGCAATTCGA
1 ATTTGACTATCGCAACGCGA
* *
112804 ATTTGACTATCACAATGCGA
1 ATTTGACTATCGCAACGCGA
* *
112824 ATTTGACTATCGCAACACAA
1 ATTTGACTATCGCAACGCGA
*
112844 ATATGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
* *
112863 A----A-AATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
112878 ATTTGACTATCGCAATGCGA
1 ATTTGACTATCGCAACGCGA
*
112898 ATTTGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
* **
112918 ATTTGATTATCGCAACGAAA
1 ATTTGACTATCGCAACGCGA
*
112938 ATTTAACTATCGCAACG
1 ATTTGACTATCGCAACG
112955 AGAAAATCGT
Statistics
Matches: 161, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
14 9 0.06
15 3 0.02
19 3 0.02
20 146 0.91
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:113022 original size:20 final size:20
Alignment explanation
Indices: 112993--113070 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
112983 GCAACGTGAA
112993 TTGACTTTCGCTTTGCGATT
1 TTGACTTTCGCTTTGCGATT
*
113013 TTGGCTTTCG-TATTGCGATT
1 TTGACTTTCGCT-TTGCGATT
*
113033 TTGACTTTCGCATTGCGATT
1 TTGACTTTCGCTTTGCGATT
* * *
113053 TTGAGTTTAGCGTTGCGA
1 TTGACTTTCGCTTTGCGA
113071 AAGTGTACCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 49 0.98
ACGTcount: A:0.13, C:0.17, G:0.24, T:0.46
Consensus pattern (20 bp):
TTGACTTTCGCTTTGCGATT
Found at i:113186 original size:36 final size:36
Alignment explanation
Indices: 113145--113253 Score: 119
Period size: 36 Copynumber: 3.3 Consensus size: 36
113135 TTACATTTAA
113145 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
* * *
113181 ATCAA-T---TAA--ACAAAT--CAACT-TTTACAA
1 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
*
113208 ATCAATTAAACAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
113244 ATCAATTAAA
1 ATCAATTAAA
113254 CAAATCAACT
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
27 11 0.19
28 4 0.07
30 6 0.11
31 2 0.04
32 3 0.05
33 6 0.11
35 4 0.07
36 21 0.37
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.28
Consensus pattern (36 bp):
ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
Found at i:113225 original size:63 final size:63
Alignment explanation
Indices: 113122--113275 Score: 263
Period size: 63 Copynumber: 2.4 Consensus size: 63
113112 GATTGAAATC
*
113122 AACAAATCAACTTTTACATTTAAATCAATTAAATAAGCACAAATAAGAATTATTTACACATCAAT
1 AACAAATCAACTTTTAC----AAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAAT
113187 TA
62 TA
113189 AACAAATCAACTTTTACAAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATTA
113252 AACAAATCAACTTTTACAAATCAA
1 AACAAATCAACTTTTACAAATCAA
113276 CTTTTACAAA
Statistics
Matches: 86, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
63 69 0.80
67 17 0.20
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.29
Consensus pattern (63 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATTA
Found at i:113272 original size:14 final size:14
Alignment explanation
Indices: 113253--113289 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
113243 CATCAATTAA
113253 ACAAATCAACTTTT
1 ACAAATCAACTTTT
113267 ACAAATCAACTTTT
1 ACAAATCAACTTTT
113281 ACAAATCAA
1 ACAAATCAA
113290 TTAAACAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:114699 original size:21 final size:21
Alignment explanation
Indices: 114676--114769 Score: 75
Period size: 21 Copynumber: 4.5 Consensus size: 21
114666 ATGAATCGAG
*
114676 CTCTTGAATGGTGAGA-GGGA
1 CTCTTGAACGGTGAGAGGGGA
* * * *
114696 GCTCTTCAACGATGACAGGGGC
1 -CTCTTGAACGGTGAGAGGGGA
*
114718 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGAGAGGGGA
* * *
114739 CTCTTG-AGGGATGATAGGGGC
1 CTCTTGAACGG-TGAGAGGGGA
114760 CTCTTGAACG
1 CTCTTGAACG
114770 ATAGGAGAGG
Statistics
Matches: 55, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
20 3 0.05
21 47 0.85
22 5 0.09
ACGTcount: A:0.21, C:0.18, G:0.38, T:0.22
Consensus pattern (21 bp):
CTCTTGAACGGTGAGAGGGGA
Found at i:114736 original size:42 final size:41
Alignment explanation
Indices: 114676--114798 Score: 138
Period size: 42 Copynumber: 2.9 Consensus size: 41
114666 ATGAATCGAG
* * *
114676 CTCTTGAATGGTGAGAGGGAGCTCTTCAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGG-GCTCTTGAACGATGACAGGGGC
** *
114718 CTCTTGAACGGTGGGAGGGGACTCTTGAGGGATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGG-CTCTTGAACGATGACAGGGGC
* * *
114760 CTCTTGAACGATAGGAGAGGCCTCTTGAACGATGACAGG
1 CTCTTGAACGGTGGGAG-GGGCTCTTGAACGATGACAGG
114799 TGATTCAGGC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 64 0.96
43 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.37, T:0.21
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGCTCTTGAACGATGACAGGGGC
Found at i:115316 original size:20 final size:20
Alignment explanation
Indices: 115293--115341 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
115283 GAAACTTAAA
115293 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
115313 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
115333 ATCGCAACG
1 ATCGCAACG
115342 GGATAATCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:115432 original size:20 final size:20
Alignment explanation
Indices: 115399--115436 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
115389 CGAAACTAAA
* *
115399 TTCGCGTTGTGATTTTCATT
1 TTCGCATTGCGATTTTCATT
115419 TTCGCATTGCGATTTTCA
1 TTCGCATTGCGATTTTCA
115437 CGTTGCGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.18, G:0.18, T:0.50
Consensus pattern (20 bp):
TTCGCATTGCGATTTTCATT
Found at i:115476 original size:33 final size:34
Alignment explanation
Indices: 115409--115478 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 34
115399 TTCGCGTTGT
* *
115409 GATTTTCATTTTCGCATTGCGATTTTCACGTTGC
1 GATTTTCATTTTCGCATTGCGATTATCACATTGC
* *
115443 GATTTTTA-TTTCGCATTGCGATTATCCCATTGC
1 GATTTTCATTTTCGCATTGCGATTATCACATTGC
115476 GAT
1 GAT
115479 AGTCAAATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (34 bp):
GATTTTCATTTTCGCATTGCGATTATCACATTGC
Found at i:115497 original size:20 final size:20
Alignment explanation
Indices: 115472--115538 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
115462 GATTATCCCA
*
115472 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAATTTCGCG
*
115492 TTGCGATAGTC-ATTTCCGTG
1 TTGCGATAGTCAATTT-CGCG
* *
115512 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCAATTTCGCG
115532 TTGCGAT
1 TTGCGAT
115539 TTTTAAGTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 3 0.08
20 34 0.85
21 3 0.08
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCAATTTCGCG
Found at i:117359 original size:20 final size:20
Alignment explanation
Indices: 117336--117464 Score: 85
Period size: 20 Copynumber: 6.8 Consensus size: 20
117326 TCTGAAACTT
117336 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
117356 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** ** **
117376 ACTATCGCAACGTGAATTTG
1 AAAATCGCAACACGAAAATG
**
117396 ACTATCGCAACTA-G---AT-
1 AAAATCGCAAC-ACGAAAATG
117412 --AATCGCAACACG-AAATG
1 AAAATCGCAACACGAAAATG
*
117429 AAAATCGCAACACAAAAATG
1 AAAATCGCAACACGAAAATG
** *
117449 ACTATCGCAACGCGAA
1 AAAATCGCAACACGAA
117465 TTTGACTATC
Statistics
Matches: 87, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
13 1 0.01
14 9 0.10
16 2 0.02
17 1 0.01
19 11 0.13
20 63 0.72
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:117451 original size:53 final size:54
Alignment explanation
Indices: 117358--117459 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 54
117348 CGAAAATGAA
** *** **
117358 AATCGCAACACGAAAATGACTATCGCAACGTGAATTTGACTATCGCAACTAGAT
1 AATCGCAACACGAAAATGAAAATCGCAACACAAAAATGACTATCGCAACTAGAT
117412 AATCGCAACACG-AAATGAAAATCGCAACACAAAAATGACTATCGCAAC
1 AATCGCAACACGAAAATGAAAATCGCAACACAAAAATGACTATCGCAAC
117460 GCGAATTTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 29 0.71
54 12 0.29
ACGTcount: A:0.44, C:0.24, G:0.15, T:0.18
Consensus pattern (54 bp):
AATCGCAACACGAAAATGAAAATCGCAACACAAAAATGACTATCGCAACTAGAT
Found at i:117458 original size:73 final size:74
Alignment explanation
Indices: 117338--117475 Score: 251
Period size: 73 Copynumber: 1.9 Consensus size: 74
117328 TGAAACTTAA
* *
117338 AATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACTATCGCAACGTGAATTTGACTATCG
1 AATCGCAACACGAAAATGAAAATCGCAACACAAAAATGACTATCGCAACGCGAATTTGACTATCG
117403 CAACTAGAT
66 CAACTAGAT
117412 AATCGCAACACG-AAATGAAAATCGCAACACAAAAATGACTATCGCAACGCGAATTTGACTATCG
1 AATCGCAACACGAAAATGAAAATCGCAACACAAAAATGACTATCGCAACGCGAATTTGACTATCG
117476 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
73 50 0.81
74 12 0.19
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.18
Consensus pattern (74 bp):
AATCGCAACACGAAAATGAAAATCGCAACACAAAAATGACTATCGCAACGCGAATTTGACTATCG
CAACTAGAT
Found at i:117882 original size:22 final size:22
Alignment explanation
Indices: 117855--117896 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
117845 AGATAGACGG
117855 ATTTCGTCGGAGATGGGGACAT
1 ATTTCGTCGGAGATGGGGACAT
117877 ATTTCGTCGGAGATGGGGAC
1 ATTTCGTCGGAGATGGGGAC
117897 GGATGTCACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.38, T:0.26
Consensus pattern (22 bp):
ATTTCGTCGGAGATGGGGACAT
Found at i:118098 original size:20 final size:20
Alignment explanation
Indices: 118075--118118 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
118065 TATTGCAACA
**
118075 CGATAGTCATTATCGCGTTG
1 CGATAGTCAGAATCGCGTTG
*
118095 CGATTGTCAGAATCGCGTTG
1 CGATAGTCAGAATCGCGTTG
118115 CGAT
1 CGAT
118119 TTACATATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.32
Consensus pattern (20 bp):
CGATAGTCAGAATCGCGTTG
Found at i:118237 original size:20 final size:19
Alignment explanation
Indices: 118214--118259 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
118204 GGAAACTGAT
* *
118214 TTGCGATACTGGAGATCGCG
1 TTGCGAT-CTAGAGATCGCA
*
118234 TTGCGATTTAGAGATCGCA
1 TTGCGATCTAGAGATCGCA
118253 TTGCGAT
1 TTGCGAT
118260 TTTGTTGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (19 bp):
TTGCGATCTAGAGATCGCA
Found at i:118249 original size:19 final size:19
Alignment explanation
Indices: 118225--118261 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
118215 TGCGATACTG
*
118225 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
118244 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
118262 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:120615 original size:31 final size:31
Alignment explanation
Indices: 120577--120730 Score: 274
Period size: 31 Copynumber: 5.0 Consensus size: 31
120567 CCCGAAGGAC
* *
120577 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
120608 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
120639 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
120670 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
120701 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
120731 CCCTCAACCC
Statistics
Matches: 120, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
31 119 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:124907 original size:31 final size:31
Alignment explanation
Indices: 124869--125022 Score: 274
Period size: 31 Copynumber: 5.0 Consensus size: 31
124859 CCCGAAGGAC
* *
124869 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
124900 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
124931 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
124962 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
124993 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
125023 CCCTCGACCC
Statistics
Matches: 120, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
31 119 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:130817 original size:61 final size:60
Alignment explanation
Indices: 130668--130857 Score: 220
Period size: 60 Copynumber: 3.1 Consensus size: 60
130658 ATTTAAATGG
* * *
130668 ATTTGGGGATGAAGTTGGAATATTCAAAAGTTTAGGGACCAATTTAGAAAGAGGGTTATA
1 ATTTAGGGATGAAGTTGGAATATTCAAAAGTTTAAGGACCAATTTAGAAAGAAGGTTATA
* * * * * * * *
130728 GTTTAGGGATAAAGTTAGAATCTTCAAAAGGTTAAGGACTAATTTAGAATGAAGAGTCATA
1 ATTTAGGGATGAAGTTGGAATATTCAAAAGTTTAAGGACCAATTTAGAAAGAAG-GTTATA
* * *
130789 ATTTAGGGATGTAA-TTGGAATATCCAAAAGTTTAAGGACCAATTTATAAGGAAGGTTATA
1 ATTTAGGGATG-AAGTTGGAATATTCAAAAGTTTAAGGACCAATTTAGAAAGAAGGTTATA
*
130849 ATTTGGGGA
1 ATTTAGGGA
130858 CATACAATGT
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
60 57 0.54
61 47 0.44
62 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (60 bp):
ATTTAGGGATGAAGTTGGAATATTCAAAAGTTTAAGGACCAATTTAGAAAGAAGGTTATA
Found at i:135087 original size:36 final size:35
Alignment explanation
Indices: 135013--135118 Score: 115
Period size: 36 Copynumber: 3.0 Consensus size: 35
135003 AAAGACGAAT
* * * *
135013 ACTTGAAACGAAAGTGT-GATACATTCTTCCGTTTG
1 ACTTGAATCGGAAGTGTCGATGC-TTCTTCCGTTCG
135048 ACTTGAATCGGAAGTGTCGATGCTTCCTTCCGTTCG
1 ACTTGAATCGGAAGTGTCGATGCTT-CTTCCGTTCG
* * *
135084 ACTTGAATCGGAAGTGCCAATGCTTTCTTTCGTTC
1 ACTTGAATCGGAAGTGTCGATGC-TTCTTCCGTTC
135119 TTCTTATTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
35 17 0.28
36 42 0.69
37 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (35 bp):
ACTTGAATCGGAAGTGTCGATGCTTCTTCCGTTCG
Found at i:153824 original size:14 final size:15
Alignment explanation
Indices: 153800--153837 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
153790 AGCAACCCAT
153800 TTCGTTTTCTTTTAA
1 TTCGTTTTCTTTTAA
153815 TTCG-TTTCTTTTAA
1 TTCGTTTTCTTTTAA
*
153829 TTCATTTTC
1 TTCGTTTTC
153838 AATTTCTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.13, C:0.16, G:0.05, T:0.66
Consensus pattern (15 bp):
TTCGTTTTCTTTTAA
Found at i:154199 original size:11 final size:11
Alignment explanation
Indices: 154183--154207 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
154173 TTAGAAAAAG
154183 AAAAAAGGAAA
1 AAAAAAGGAAA
154194 AAAAAAGGAAA
1 AAAAAAGGAAA
154205 AAA
1 AAA
154208 TGAATGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAAGGAAA
Found at i:156160 original size:14 final size:15
Alignment explanation
Indices: 156136--156173 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
156126 AGCAACCCAT
156136 TTCGTTTTCTTTTAA
1 TTCGTTTTCTTTTAA
156151 TTCG-TTTCTTTTAA
1 TTCGTTTTCTTTTAA
*
156165 TTCATTTTC
1 TTCGTTTTC
156174 AATTTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.13, C:0.16, G:0.05, T:0.66
Consensus pattern (15 bp):
TTCGTTTTCTTTTAA
Found at i:157954 original size:26 final size:26
Alignment explanation
Indices: 157918--157971 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
157908 TCACGAGGTT
157918 TGCCCTTGTAGACAAAGTAACCAACA
1 TGCCCTTGTAGACAAAGTAACCAACA
157944 TGCCCTTGTAGACAAAGTAACCAACA
1 TGCCCTTGTAGACAAAGTAACCAACA
157970 TG
1 TG
157972 AATCTCAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (26 bp):
TGCCCTTGTAGACAAAGTAACCAACA
Found at i:159741 original size:29 final size:29
Alignment explanation
Indices: 159682--159872 Score: 251
Period size: 29 Copynumber: 6.6 Consensus size: 29
159672 TACAGTCGAA
* *
159682 AATTACAAAAATATCACATTTTTTAAAAAT
1 AATTACCAAAATATCAC-TATTTTAAAAAT
* *
159712 AATTCCCAAAATATCACTACTTTAAAAAT
1 AATTACCAAAATATCACTATTTTAAAAAT
* *
159741 AATTACTAAAATATCACCGA-TTTAAAAAT
1 AATTACCAAAATATCA-CTATTTTAAAAAT
*
159770 AATTACCAAAATATCACCATTTTAAAAAT
1 AATTACCAAAATATCACTATTTTAAAAAT
*
159799 AATTACCAAAATATCA-TCGTTTTAAAAAT
1 AATTACCAAAATATCACT-ATTTTAAAAAT
*
159828 AATTACCAAAATATCATTATTTTAAAAAT
1 AATTACCAAAATATCACTATTTTAAAAAT
*
159857 AATTCCCAAAATATCA
1 AATTACCAAAATATCA
159873 TCTGGTCGGG
Statistics
Matches: 144, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
28 2 0.01
29 124 0.86
30 18 0.12
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.33
Consensus pattern (29 bp):
AATTACCAAAATATCACTATTTTAAAAAT
Found at i:161276 original size:15 final size:15
Alignment explanation
Indices: 161256--161284 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
161246 CCAATAAGCT
161256 CAAACAAAGATGATA
1 CAAACAAAGATGATA
161271 CAAACAAAGATGAT
1 CAAACAAAGATGAT
161285 CACATCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
CAAACAAAGATGATA
Found at i:164887 original size:823 final size:823
Alignment explanation
Indices: 163302--164948 Score: 2909
Period size: 823 Copynumber: 2.0 Consensus size: 823
163292 CTGAATTTGA
* * * *
163302 GAAGGTTTTTGTAGCTCCACACGGTTTGCCGCCGATGAGAGAAATCGATCATACTATTCACCTGC
1 GAAGGTTTTTGTAGATCCACACGGTTTACCGCCGATAAGAGAAATCGATCATACTATTCACCTAC
163367 AACCTATGAGTAAACCGGTTAATGTCAGACCATACAAGTATCCTTATTTTCAGAAAGATGAAGTA
66 AACCTATGAGTAAACCGGTTAATGTCAGACCATACAAGTATCCTTATTTTCAGAAAGATGAAGTA
163432 GAACGTCAGGTTCGGGACATGTTGGAAAATCAATTGATTCGCAAGAGTAATAGCCCTTTTTCTTC
131 GAACGTCAGGTTCGGGACATGTTGGAAAATCAATTGATTCGCAAGAGTAATAGCCCTTTTTCTTC
* * * *
163497 CCCAGGGCTGCTCGTAAAGAAGAATGATGGAACATGGCGGTTTTGCGTAGACTATCGTGCTTTAA
196 CCCAAGGCTGCTCGTAAAGAAGAATGACGGAACATGGCAGTTTTGCGTAGACTATCGTGATTTAA
*
163562 ATGCAATTACAGTTAAAGATAAATTTCTTATCCCTATTGCCGATGAATTGTTTGATGAACTGGGT
261 ATGCAATTACAGTTAAAGATAAATTTCTGATCCCTATTGCCGATGAATTGTTTGATGAACTGGGT
163627 AATGCTCACTTCTTCTCTAAGTTAGATTTGCTTGCTGGATATCATCAAATCTGAGTCAAAGCTGA
326 AATGCTCACTTCTTCTCTAAGTTAGATTTGCTTGCTGGATATCATCAAATCTGAGTCAAAGCTGA
*
163692 AGATGTTTCGAAAACGGCATTCCAAACACATGACAGACATTACGAATTTCTCGTAATGTCATTCG
391 AGATGTTTCGAAAACGGCATTCCAAACACACGACAGACATTACGAATTTCTCGTAATGTCATTCG
* * *
163757 GATTAACAAACGCGCCATCCACTTTCTAGGCAATAATGAACGATCTTTTTCGCCAATTTTTACTT
456 GATTAACAAACGCGCCATCCACTTTCTAGGCAATAATGAACGATATTTTTCGCCAATTTCTACGT
* * * *
163822 AAATTTGTTTTGATTTTTCTGGATGACATTCTTGTGTATAGTCGAAATTGGCATGAACACTTAAA
521 AAATTTGTTTAGATTTTTCTGGATGACATTCTTGTGTATAGTCAAAATTGACAGGAACACTTAAA
*
163887 CCATGTACGACAAGTGCTACAAACGCTGCAAGAGAATGGTTTTATTACAAAAAGTAGCAAATGTA
586 CCATGTACGACAAGTGCTACAAACGCTGCAAGAGAATGGTTTTATTACAAAAAGCAGCAAATGTA
* *
163952 CATTCAGACAAACCTCAGTTGAGTATCTGGGTCATGTAATTTCTCGAGAGGGTTTGTCAGTAGAT
651 CATTCAAACAAACCTCAATTGAGTATCTGGGTCATGTAATTTCTCGAGAGGGTTTGTCAGTAGAT
164017 CCTTCAAAGGCTGAGGTAATAAAAACATGGCCGATACCTACAACGATCAAGGACGTGCGAAGTTT
716 CCTTCAAAGGCTGAGGTAATAAAAACATGGCCGATACCTACAACGATCAAGGACGTGCGAAGTTT
* *
164082 TCTGGGCATCGTAGGATATTATCGTAAATTTATTAAAGGATTT
781 TCTGGGCATCGCAGGATATTATCGCAAATTTATTAAAGGATTT
164125 GAAGGTTTTTGTAGATCCACACGGTTTACCGCCGATAAGAGAAATCGATCATACTATTCACCTAC
1 GAAGGTTTTTGTAGATCCACACGGTTTACCGCCGATAAGAGAAATCGATCATACTATTCACCTAC
* *
164190 AACCTATGAGTAAATCGGTTAATGTCATACCATACAAGTATCCTTATTTTCAGAAAGATGAAGTA
66 AACCTATGAGTAAACCGGTTAATGTCAGACCATACAAGTATCCTTATTTTCAGAAAGATGAAGTA
164255 GAACGTCAGGTTCGGGACATGTTGGAAAATCAATTGATTCGCAAGAGTAATAGCCCTTTTTCTTC
131 GAACGTCAGGTTCGGGACATGTTGGAAAATCAATTGATTCGCAAGAGTAATAGCCCTTTTTCTTC
* * *
164320 CCTAAGGCTGCTCGTAAAGAAGAATGACGGAACATGGCAGTTTTGTGTGGACTATCGTGATTTAA
196 CCCAAGGCTGCTCGTAAAGAAGAATGACGGAACATGGCAGTTTTGCGTAGACTATCGTGATTTAA
* *
164385 ATGTAATTATAGTTAAAGATAAATTTCTGATCCCTATTGCCGATGAATTGTTTGATGAACTGGGT
261 ATGCAATTACAGTTAAAGATAAATTTCTGATCCCTATTGCCGATGAATTGTTTGATGAACTGGGT
*
164450 AATGCTCACTTCTTCTCTAAGTTAGATTTTCTTGCTGGATATCATCAAATCTGAGTCAAAGCTGA
326 AATGCTCACTTCTTCTCTAAGTTAGATTTGCTTGCTGGATATCATCAAATCTGAGTCAAAGCTGA
* *
164515 AGATGTTTCGAAAACGGCATTTCGAACACACGACAGACATTACGAATTTCTCGTAATGTCATTCG
391 AGATGTTTCGAAAACGGCATTCCAAACACACGACAGACATTACGAATTTCTCGTAATGTCATTCG
*
164580 GATTAACAAACGCGCCATCCACTTT-TCAGGCAATAATGAACTATATTTTTCGCCAATTTCTACG
456 GATTAACAAACGCGCCATCCACTTTCT-AGGCAATAATGAACGATATTTTTCGCCAATTTCTACG
164644 TAAATTTGTTTAGATTTTTCTGGATGACATTCTTGTGTATAGTCAAAATTGACAGGAACACTTAA
520 TAAATTTGTTTAGATTTTTCTGGATGACATTCTTGTGTATAGTCAAAATTGACAGGAACACTTAA
* * *
164709 ACCATGTACGACAAGTGCTACAAACGCTGCAAGAGAATGGTTTTGTTGCAAAAAGCATCAAATGT
585 ACCATGTACGACAAGTGCTACAAACGCTGCAAGAGAATGGTTTTATTACAAAAAGCAGCAAATGT
* *
164774 ATATTCAAACAAACCTCAATTGAGTATCTGGGTCATGTAGTTTCTCGAGAGGGTTTGTCAGTAGA
650 ACATTCAAACAAACCTCAATTGAGTATCTGGGTCATGTAATTTCTCGAGAGGGTTTGTCAGTAGA
* * *
164839 TCCTTCAAAGGTTGAGGTAATAAAAGCATGGCCGATACCTACAACGATCAAGGATGTGCGAAGTT
715 TCCTTCAAAGGCTGAGGTAATAAAAACATGGCCGATACCTACAACGATCAAGGACGTGCGAAGTT
164904 TTCTGGGCATCGCAGGATATTATCGCAAATTTATTAAAGGATTT
780 TTCTGGGCATCGCAGGATATTATCGCAAATTTATTAAAGGATTT
164948 G
1 G
164949 CAACCATTGC
Statistics
Matches: 782, Mismatches: 41, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
822 1 0.00
823 781 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (823 bp):
GAAGGTTTTTGTAGATCCACACGGTTTACCGCCGATAAGAGAAATCGATCATACTATTCACCTAC
AACCTATGAGTAAACCGGTTAATGTCAGACCATACAAGTATCCTTATTTTCAGAAAGATGAAGTA
GAACGTCAGGTTCGGGACATGTTGGAAAATCAATTGATTCGCAAGAGTAATAGCCCTTTTTCTTC
CCCAAGGCTGCTCGTAAAGAAGAATGACGGAACATGGCAGTTTTGCGTAGACTATCGTGATTTAA
ATGCAATTACAGTTAAAGATAAATTTCTGATCCCTATTGCCGATGAATTGTTTGATGAACTGGGT
AATGCTCACTTCTTCTCTAAGTTAGATTTGCTTGCTGGATATCATCAAATCTGAGTCAAAGCTGA
AGATGTTTCGAAAACGGCATTCCAAACACACGACAGACATTACGAATTTCTCGTAATGTCATTCG
GATTAACAAACGCGCCATCCACTTTCTAGGCAATAATGAACGATATTTTTCGCCAATTTCTACGT
AAATTTGTTTAGATTTTTCTGGATGACATTCTTGTGTATAGTCAAAATTGACAGGAACACTTAAA
CCATGTACGACAAGTGCTACAAACGCTGCAAGAGAATGGTTTTATTACAAAAAGCAGCAAATGTA
CATTCAAACAAACCTCAATTGAGTATCTGGGTCATGTAATTTCTCGAGAGGGTTTGTCAGTAGAT
CCTTCAAAGGCTGAGGTAATAAAAACATGGCCGATACCTACAACGATCAAGGACGTGCGAAGTTT
TCTGGGCATCGCAGGATATTATCGCAAATTTATTAAAGGATTT
Found at i:167333 original size:22 final size:21
Alignment explanation
Indices: 167291--167340 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
167281 GAAAATAAAA
* * *
167291 AATAAAAGAAAATAGAGATAC
1 AATAAAAGAAAAGAAAAATAC
167312 AATATAAAGAAAAGAAAAATAC
1 AATA-AAAGAAAAGAAAAATAC
167334 AATAAAA
1 AATAAAA
167341 AATACCGACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.72, C:0.04, G:0.10, T:0.14
Consensus pattern (21 bp):
AATAAAAGAAAAGAAAAATAC
Found at i:176963 original size:16 final size:16
Alignment explanation
Indices: 176942--176975 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
176932 CCTATGAAGT
176942 TATTCTCTTTTTTGTC
1 TATTCTCTTTTTTGTC
*
176958 TATTCTTTTTTTTGTC
1 TATTCTCTTTTTTGTC
176974 TA
1 TA
176976 GTTCGAGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.15, G:0.06, T:0.71
Consensus pattern (16 bp):
TATTCTCTTTTTTGTC
Found at i:181848 original size:22 final size:22
Alignment explanation
Indices: 181806--181854 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
181796 ATTTGTTAAT
* *
181806 AGTAATTAAAAATGTATTCATA
1 AGTAATAAAAAATGTAATCATA
181828 AGTAATAAACAAAT-TAATCATA
1 AGTAATAAA-AAATGTAATCATA
*
181850 GGTAA
1 AGTAA
181855 ACATATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.53, C:0.06, G:0.10, T:0.31
Consensus pattern (22 bp):
AGTAATAAAAAATGTAATCATA
Found at i:191330 original size:36 final size:35
Alignment explanation
Indices: 191279--191356 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 35
191269 GGCAACCAAC
191279 TTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 TTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* * *
191313 ATTTGAAAAATGTTTTTCATAGTTTGGTAGATGTTT
1 -TTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
191349 GTTGAAAA
1 TTTGAAAA
191357 TAGGAATGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
35 11 0.29
36 27 0.71
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (35 bp):
TTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:195878 original size:21 final size:21
Alignment explanation
Indices: 195854--195914 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
195844 CCAACTTTGA
195854 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
195875 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
195889 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
195910 AAATG
1 AAATG
195915 TTTATTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:195887 original size:35 final size:35
Alignment explanation
Indices: 195848--195952 Score: 158
Period size: 35 Copynumber: 3.0 Consensus size: 35
195838 TGGCAACCAA
195848 CTTTGAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAATGGTTTTCAAAGTTTGGTAAATGTTT
195883 CTTTGAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* * * *
195918 ATTTGAAAAATGTTTTTTAAAGTTTGATAAA-GTTT
1 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
195953 GGTAGATGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
35 43 0.66
36 22 0.34
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (35 bp):
CTTTGAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:199170 original size:37 final size:37
Alignment explanation
Indices: 199120--199225 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
199110 TCGCTTCGAG
199120 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCCAAA
1 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCCAAA
*
199157 AGAAACTGTCTCAAGGGAGACAAAACTTAG-TTCCAAA
1 AGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCCAAA
*
199194 AGAAACTGTCTCAAGGGAGACGAAATTTGTTT
1 AGAAACTGTCTCAAGGGAGACAAAATTTGTTT
199226 TAAGGAAAAC
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
36 3 0.05
37 58 0.91
38 3 0.05
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (37 bp):
AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCCAAA
Found at i:199338 original size:103 final size:102
Alignment explanation
Indices: 199158--199367 Score: 314
Period size: 103 Copynumber: 2.0 Consensus size: 102
199148 GTTTCCAAAA
* ** * * *
199158 GAAACTGTCTCAAGGGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTTG
1 GAAACCGTCTCAAGAAAGACAAAACTTAGTTCCAAAAGAAACCGTCTCAAGAGAGACGAAATTAG
199223 TTTTAAGGAAAACATATTCAAAGATTTTTGTTTCAAGG
66 TTTTAAGGAAAACATATTCAAAGA-TTTTGTTTCAAGG
* *
199261 GAAACCGTCTCAAGAAAGACAAAACTTTGTTCTAAAAGAAACCGTCTCAAGAGAGACGAAATTAG
1 GAAACCGTCTCAAGAAAGACAAAACTTAGTTCCAAAAGAAACCGTCTCAAGAGAGACGAAATTAG
*
199326 -TTTAATGTAAAACATATTCAAAGATTTTGTTTCAAGG
66 TTTTAA-GGAAAACATATTCAAAGATTTTGTTTCAAGG
199363 GAAAC
1 GAAAC
199368 TGTTTTCAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
102 23 0.24
103 74 0.76
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (102 bp):
GAAACCGTCTCAAGAAAGACAAAACTTAGTTCCAAAAGAAACCGTCTCAAGAGAGACGAAATTAG
TTTTAAGGAAAACATATTCAAAGATTTTGTTTCAAGG
Found at i:199537 original size:171 final size:171
Alignment explanation
Indices: 199249--199577 Score: 498
Period size: 171 Copynumber: 1.9 Consensus size: 171
199239 TTCAAAGATT
* *
199249 TTTGTTTCAAGGGAAACCGTCTCAAGAAAGACAAAACTTTGTTCTAAAAGAAACCGTCTCAAGAG
1 TTTGTTTCAAGAGAAACCGTCTCAAGAAAGACAAAAC--T-TTCCAAAAGAAACCGTCTCAAGAG
199314 AGACGAAATTAGTTTAATGTAAAACATATTCAAAGATTTTGTTTCAAGGGAAACTGTTTTCAAAG
63 AGACGAAATTAGTTTAATGTAAAACATATTCAAAGATTTTGTTTCAAGGGAAACTGTTTTCAAAG
* *
199379 TTCATGTTTTAAGAGAAACTATCTCAAGAGAGACGAAGACAAAA
128 TTCATGTCTCAAGAGAAACTATCTCAAGAGAGACGAAGACAAAA
* * * *
199423 TTTGTTTCAAGAGAAACTGTCTCAAGATAGACAAAAAC-TTCCAAAAGAAACTGTCTCAAGGGAG
1 TTTGTTTCAAGAGAAACCGTCTCAAGAAAGAC-AAAACTTTCCAAAAGAAACCGTCTCAAGAGAG
* **
199487 ACGAAATTTGTTTAATGTAGCACATATTCAAAGATTTTGTTTCAAGGGAAACTGTTTTCAAAGTT
65 ACGAAATTAGTTTAATGTAAAACATATTCAAAGATTTTGTTTCAAGGGAAACTGTTTTCAAAGTT
* *
199552 TATGTCTCAAGAGAAACTGTCTCAAG
130 CATGTCTCAAGAGAAACTATCTCAAG
199578 GGATACAAAA
Statistics
Matches: 141, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
171 107 0.76
174 29 0.21
175 5 0.04
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (171 bp):
TTTGTTTCAAGAGAAACCGTCTCAAGAAAGACAAAACTTTCCAAAAGAAACCGTCTCAAGAGAGA
CGAAATTAGTTTAATGTAAAACATATTCAAAGATTTTGTTTCAAGGGAAACTGTTTTCAAAGTTC
ATGTCTCAAGAGAAACTATCTCAAGAGAGACGAAGACAAAA
Found at i:199549 original size:30 final size:30
Alignment explanation
Indices: 199513--199571 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
199503 GTAGCACATA
* *
199513 TTCAAAGATTT-TGTTTCAAGGGAAACTGTT
1 TTCAAAG-TTTATGTCTCAAGAGAAACTGTT
199543 TTCAAAGTTTATGTCTCAAGAGAAACTGT
1 TTCAAAGTTTATGTCTCAAGAGAAACTGT
199572 CTCAAGGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (30 bp):
TTCAAAGTTTATGTCTCAAGAGAAACTGTT
Found at i:199611 original size:36 final size:36
Alignment explanation
Indices: 199566--199636 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
199556 TCTCAAGAGA
* * **
199566 AACTGTCTCAAGGGATACAAAATTTGTTTCAAGGGG
1 AACTATCTCAAGGGAGACAAAATTCATTTCAAGGGG
*
199602 AACTATCTCAAGGGAGAGAAAATTCATTTCAAGGG
1 AACTATCTCAAGGGAGACAAAATTCATTTCAAGGG
199637 AAATGTTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (36 bp):
AACTATCTCAAGGGAGACAAAATTCATTTCAAGGGG
Found at i:199705 original size:37 final size:37
Alignment explanation
Indices: 199655--199727 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
199645 TCAATGTTTA
* * *
199655 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTT
199692 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATT
199728 CATTTCAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.26
Consensus pattern (37 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTT
Found at i:199726 original size:102 final size:102
Alignment explanation
Indices: 199526--199811 Score: 394
Period size: 102 Copynumber: 2.9 Consensus size: 102
199516 AAAGATTTTG
* * *
199526 TTTCAAGGGAAACTGTTTTCAAAGTTTATGTCTCAAGAGAAACTGTCTCAAGGGATACAAAA-TT
1 TTTCAAGGGAAA-TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* * *
199590 TGTTTCAAGGGGAACTATCTCAAGGGAGAGAAAATTCA
65 TGTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATTCA
199628 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
*
199693 GTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTCA
66 GTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATTCA
199730 TTTCAAGGG--A-------AATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTT
*
199786 CTGTTTCGAGGGAAAACTATCTCAAG
65 -TGTTTCAAGGG-AAACTATCTCAAG
199812 CAAGATAAAA
Statistics
Matches: 171, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
93 42 0.25
94 3 0.02
95 9 0.05
96 13 0.08
100 1 0.01
101 46 0.27
102 57 0.33
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (102 bp):
TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
GTTTCAAGGGAAACTATCTCAAGAGAGAAAAAATTCA
Found at i:199974 original size:72 final size:75
Alignment explanation
Indices: 199789--199989 Score: 206
Period size: 72 Copynumber: 2.7 Consensus size: 75
199779 AAATTTTCTG
* * * * * *
199789 TTTCGAGGGAAAACTATCTCAAGCAAGATAAAATC-T-TCTTAA-AAAAAC-AGCATTGAGTGAA
1 TTTCGAGTGAAAACGATCTCAAGCGAGA-CAAATCTTGTTTTAAGAAAAACAATC-TTGAGTGAA
199850 ATGAAATGCCTTC
64 ATGAAAT-CCTTC
199863 TTTCGAGTGAAAACGATCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
1 TTTCGAGTGAAAACGATCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
199928 -AAAT-CTTC
66 GAAATCCTTC
* *
199936 TTTCGAGT--AAA-GTAGTCTCAAGTGAGACAAAGTC-TGTTTTAAGAAAAGCAATCT
1 TTTCGAGTGAAAACG-A-TCTCAAGCGAGACAAA-TCTTGTTTTAAGAAAAACAATCT
199990 CAAGTGAGAT
Statistics
Matches: 112, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
70 1 0.01
71 4 0.04
72 34 0.30
73 19 0.17
74 26 0.23
75 9 0.08
76 17 0.15
77 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (75 bp):
TTTCGAGTGAAAACGATCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
GAAATCCTTC
Found at i:199991 original size:36 final size:35
Alignment explanation
Indices: 199878--199998 Score: 109
Period size: 36 Copynumber: 3.4 Consensus size: 35
199868 AGTGAAAACG
* *
199878 ATCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACA
1 ATCTCAAGTGAGACAAATC-TGTTTTAAGAAAAGCA
** * * * * *
199914 ATCTTGAGTGAAATAAATCT-TCTTTCGAGTAAAGTA
1 ATCTCAAGTGAGACAAATCTGT-TTT-AAGAAAAGCA
*
199950 GTCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAGCA
1 ATCTCAAGTGAGACAAA-TCTGTTTTAAGAAAAGCA
199986 ATCTCAAGTGAGA
1 ATCTCAAGTGAGA
199999 TAATCATCTG
Statistics
Matches: 63, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
34 1 0.02
35 4 0.06
36 51 0.81
37 6 0.10
38 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (35 bp):
ATCTCAAGTGAGACAAATCTGTTTTAAGAAAAGCA
Found at i:201464 original size:183 final size:183
Alignment explanation
Indices: 201156--201509 Score: 627
Period size: 183 Copynumber: 1.9 Consensus size: 183
201146 ATCAGGTTTA
*
201156 ACTGAAGGGTTCCTCTCATCACAAAGTCTTCAGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCCTCTCATCACAAAGTCTTCAGCCTAACAAAAGCAGTGGAGCAAACACCGAATT
* *
201221 GCCAAGTTTTCGAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGTT
66 GCCAAGTGTCCGAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGTT
201286 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATT
131 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATT
* ** *
201339 ACTGAAGGGTTCGTCTCATCACAAAGTCTTTGGCCTAACAAAAGCAGTGGAGCAAATACCGAATT
1 ACTGAAGGGTTCCTCTCATCACAAAGTCTTCAGCCTAACAAAAGCAGTGGAGCAAACACCGAATT
* *
201404 GCCAAGTGTCCGAGCATTGTCATGGTTTGAATGTAATCTATTCATAAAGTCAGGGCTTTCGAGTT
66 GCCAAGTGTCCGAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGTT
201469 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
131 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
201510 CGGATTTAAT
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 162 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (183 bp):
ACTGAAGGGTTCCTCTCATCACAAAGTCTTCAGCCTAACAAAAGCAGTGGAGCAAACACCGAATT
GCCAAGTGTCCGAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGTT
TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATT
Found at i:213259 original size:59 final size:59
Alignment explanation
Indices: 213184--213311 Score: 213
Period size: 59 Copynumber: 2.2 Consensus size: 59
213174 ATTTTCATCT
213184 AATAACAA-TACATGAATATAATATTACATACATAACTTATCTGACTAAAGAACATATTA
1 AATAA-AATTACATGAATATAATATTACATACATAACTTATCTGACTAAAGAACATATTA
* * *
213243 AATAAAATTACATGAATATAATATTGCGTACATAACTTATCTGACTAAATAACATATTA
1 AATAAAATTACATGAATATAATATTACATACATAACTTATCTGACTAAAGAACATATTA
213302 AATAAAATTA
1 AATAAAATTA
213312 AATCAATCGT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
58 2 0.03
59 63 0.97
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (59 bp):
AATAAAATTACATGAATATAATATTACATACATAACTTATCTGACTAAAGAACATATTA
Found at i:226900 original size:19 final size:20
Alignment explanation
Indices: 226869--226911 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
226859 TTTATTGAAA
*
226869 ATAA-AAAATATTTAAAATT
1 ATAATAAAATATTTAAAAGT
*
226888 ATAATAAAA-ATTTACAAGT
1 ATAATAAAATATTTAAAAGT
226907 ATAAT
1 ATAAT
226912 CGTTAACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAATAAAATATTTAAAAGT
Found at i:236313 original size:111 final size:111
Alignment explanation
Indices: 236176--236403 Score: 402
Period size: 111 Copynumber: 2.1 Consensus size: 111
236166 ATTACAAAAA
236176 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
* * * *
236241 AATTAAAACGTTAAAATGTTATCGTATCAGCAAATTGTCGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
*
236287 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTATTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
236352 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
*
236398 ATAATT
1 TTAATT
236404 TCCATCCGAG
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:236557 original size:12 final size:10
Alignment explanation
Indices: 236540--236568 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
236530 GAGAGAGTAT
236540 TTGAGAGAAA
1 TTGAGAGAAA
236550 TTGAGAGAAA
1 TTGAGAGAAA
236560 TTGAGAGAA
1 TTGAGAGAA
236569 TTTGGTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.31, T:0.21
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:238192 original size:105 final size:105
Alignment explanation
Indices: 238010--238216 Score: 369
Period size: 105 Copynumber: 2.0 Consensus size: 105
238000 TAGATTGGAA
* * *
238010 CTGGACTGGGGTGATGATTGGGATGGTATATGAAGTTTCCATCAATGAGTTCTTAAGGCAAATTT
1 CTGGACTGGGGTGATGATTGGGATGGTATATGAAGTTTCAATCAATGAGTTCTTAAGACAAAGTT
238075 TAAAGTTTATATTCTTGTCGATCTAAAATATGGGTGTGAT
66 TAAAGTTTATATTCTTGTCGATCTAAAATATGGGTGTGAT
*
238115 CTGGACTGGGGTTATGATTGGGATGGTATATGAAGTTTCAATCAATGAGTTCTTAAGACAAAGTT
1 CTGGACTGGGGTGATGATTGGGATGGTATATGAAGTTTCAATCAATGAGTTCTTAAGACAAAGTT
*
238180 TAAAGTTTATATTCTTGTCGATCTGAAATATGGGTGT
66 TAAAGTTTATATTCTTGTCGATCTAAAATATGGGTGT
238217 AATGCTTATA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.37
Consensus pattern (105 bp):
CTGGACTGGGGTGATGATTGGGATGGTATATGAAGTTTCAATCAATGAGTTCTTAAGACAAAGTT
TAAAGTTTATATTCTTGTCGATCTAAAATATGGGTGTGAT
Found at i:265333 original size:59 final size:59
Alignment explanation
Indices: 265234--265352 Score: 166
Period size: 59 Copynumber: 2.0 Consensus size: 59
265224 AAACGATCCA
* *
265234 TCGACTATAGGTTATAAATTTCTTGAGTCCCCGACCATTAAAAGTTACAAAATGATCTT
1 TCGACTATAGGGTATAAATTTCTTGAGTCCCCGAACATTAAAAGTTACAAAATGATCTT
* * * * * *
265293 TCGACTATAGGGTATTATTTTGTTGAGTCCCTGAATATTAAAAGTTACAAAGTGATCTT
1 TCGACTATAGGGTATAAATTTCTTGAGTCCCCGAACATTAAAAGTTACAAAATGATCTT
265352 T
1 T
265353 TTTCGTTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (59 bp):
TCGACTATAGGGTATAAATTTCTTGAGTCCCCGAACATTAAAAGTTACAAAATGATCTT
Found at i:269911 original size:2 final size:2
Alignment explanation
Indices: 269904--269931 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
269894 TAGTTATAAA
269904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
269932 GAATTCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:270705 original size:15 final size:15
Alignment explanation
Indices: 270698--270732 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
270688 AAGATAAAAG
270698 ATATAAAGACAATAA
1 ATATAAAGACAATAA
270713 ATAT-AA-ACAATAA
1 ATATAAAGACAATAA
270726 ATATAAA
1 ATATAAA
270733 CTATGGACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 11 0.58
14 4 0.21
15 4 0.21
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.23
Consensus pattern (15 bp):
ATATAAAGACAATAA
Found at i:276122 original size:24 final size:24
Alignment explanation
Indices: 276095--276167 Score: 58
Period size: 24 Copynumber: 3.0 Consensus size: 24
276085 TGTTCATTTA
276095 CGTTC-GTGAACGTTCGATTATGTT
1 CGTTCGGT-AACGTTCGATTATGTT
* * * *
276119 CGTTTGGTTATGTTCGTTTATGTT
1 CGTTCGGTAACGTTCGATTATGTT
* * * *
276143 CGTTCGATTATGTTCGTTTATGTT
1 CGTTCGGTAACGTTCGATTATGTT
276167 C
1 C
276168 ATTCATTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 40 0.95
25 2 0.05
ACGTcount: A:0.12, C:0.14, G:0.23, T:0.51
Consensus pattern (24 bp):
CGTTCGGTAACGTTCGATTATGTT
Found at i:276129 original size:14 final size:13
Alignment explanation
Indices: 276112--276161 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
276102 GAACGTTCGA
276112 TTATGTTCGTTTGG
1 TTATGTTCGTTT-G
276126 TTATGTTCG--T-
1 TTATGTTCGTTTG
*
276136 TTATGTTCGTTCG
1 TTATGTTCGTTTG
276149 ATTATGTTCGTTT
1 -TTATGTTCGTTT
276162 ATGTTCATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
10 9 0.30
12 1 0.03
14 20 0.67
ACGTcount: A:0.10, C:0.10, G:0.22, T:0.58
Consensus pattern (13 bp):
TTATGTTCGTTTG
Found at i:276177 original size:24 final size:24
Alignment explanation
Indices: 276106--276180 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
276096 GTTCGTGAAC
* * * *
276106 GTTCGATTATGTTCGTTTGGTTAT
1 GTTCGTTTATGTTCATTCGATTAT
*
276130 GTTCGTTTATGTTCGTTCGATTAT
1 GTTCGTTTATGTTCATTCGATTAT
276154 GTTCGTTTATGTTCATTC-ATTTAT
1 GTTCGTTTATGTTCATTCGA-TTAT
276178 GTT
1 GTT
276181 TAACACAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.02
24 45 0.98
ACGTcount: A:0.13, C:0.11, G:0.20, T:0.56
Consensus pattern (24 bp):
GTTCGTTTATGTTCATTCGATTAT
Found at i:276924 original size:10 final size:10
Alignment explanation
Indices: 276905--276979 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
276895 GGGTCTCCAA
*
276905 CGTTTGTGTT
1 CGTTTATGTT
276915 CGTTTATGTT
1 CGTTTATGTT
276925 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* *
276936 ATGTTTGTGTT
1 -CGTTTATGTT
276947 CGTTTATGTT
1 CGTTTATGTT
276957 CG----TGTT
1 CGTTTATGTT
276963 CGTTTATGTT
1 CGTTTATGTT
276973 CGTTTAT
1 CGTTTAT
276980 TTATTAAATG
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.65
11 8 0.15
12 4 0.08
ACGTcount: A:0.08, C:0.11, G:0.23, T:0.59
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:276931 original size:16 final size:16
Alignment explanation
Indices: 276910--276975 Score: 114
Period size: 16 Copynumber: 4.1 Consensus size: 16
276900 TCCAACGTTT
276910 GTGTTCGTTTATGTTC
1 GTGTTCGTTTATGTTC
* *
276926 GTGTTCATTTATGTTT
1 GTGTTCGTTTATGTTC
276942 GTGTTCGTTTATGTTC
1 GTGTTCGTTTATGTTC
276958 GTGTTCGTTTATGTTC
1 GTGTTCGTTTATGTTC
276974 GT
1 GT
276976 TTATTTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.08, C:0.11, G:0.24, T:0.58
Consensus pattern (16 bp):
GTGTTCGTTTATGTTC
Found at i:277066 original size:16 final size:16
Alignment explanation
Indices: 277045--277077 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
277035 AAAAAAAATT
277045 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
277061 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
277077 T
1 T
277078 TTATTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:288577 original size:20 final size:21
Alignment explanation
Indices: 288544--288582 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
288534 ATTATAAGTA
288544 TTTTAATCTAATC-ATCAATC
1 TTTTAATCTAATCAATCAATC
* *
288564 TTTTAATTTTATCAATCAA
1 TTTTAATCTAATCAATCAA
288583 ATCACTTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTAATCTAATCAATCAATC
Found at i:291640 original size:24 final size:23
Alignment explanation
Indices: 291613--291659 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
291603 AAAAACATAC
291613 CAAATGACAGAAGAAAACGTGTCA
1 CAAA-GACAGAAGAAAACGTGTCA
* * *
291637 CAAAGATAGATGAAAATGTGTCA
1 CAAAGACAGAAGAAAACGTGTCA
291660 TACAAATAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.49, C:0.13, G:0.21, T:0.17
Consensus pattern (23 bp):
CAAAGACAGAAGAAAACGTGTCA
Found at i:295051 original size:24 final size:24
Alignment explanation
Indices: 295024--295079 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
295014 GGGAGATCAC
* * *
295024 CAGAACCGGACGAGAGAAACCATA
1 CAGAACCAGAAGAGAGAAACCACA
295048 CAGAACCAGAAGAGAGAAACCACA
1 CAGAACCAGAAGAGAGAAACCACA
295072 CAGAACCA
1 CAGAACCA
295080 TCACCGAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.50, C:0.27, G:0.21, T:0.02
Consensus pattern (24 bp):
CAGAACCAGAAGAGAGAAACCACA
Found at i:300784 original size:33 final size:34
Alignment explanation
Indices: 300747--300822 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 34
300737 TCGGGTCTGA
* * *
300747 TTTTTTAAAGTTTGATATTTGGGTTGGGTC-GGG
1 TTTTTTAAAGTGTGATATTCGGGTAGGGTCGGGG
300780 TTTTTGT-AAGTGTGATATTCGGGTAGGGTCGGGG
1 TTTTT-TAAAGTGTGATATTCGGGTAGGGTCGGGG
300814 TTTTTTAAA
1 TTTTTTAAA
300823 AAAAATCGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
33 26 0.70
34 11 0.30
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.46
Consensus pattern (34 bp):
TTTTTTAAAGTGTGATATTCGGGTAGGGTCGGGG
Found at i:300912 original size:33 final size:34
Alignment explanation
Indices: 300875--300944 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 34
300865 CGAGTCGGAT
*
300875 TTTTTTTAAATTTGATATTCGAGTC-GGGTCGGG
1 TTTTTTTAAATGTGATATTCGAGTCGGGGTCGGG
* *
300908 TTTTTTTAAGTGTGATATTCGGGTCGGGGTCGGG
1 TTTTTTTAAATGTGATATTCGAGTCGGGGTCGGG
300942 TTT
1 TTT
300945 AGGGTGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 22 0.67
34 11 0.33
ACGTcount: A:0.14, C:0.09, G:0.31, T:0.46
Consensus pattern (34 bp):
TTTTTTTAAATGTGATATTCGAGTCGGGGTCGGG
Found at i:300956 original size:128 final size:132
Alignment explanation
Indices: 300711--300947 Score: 313
Period size: 128 Copynumber: 1.8 Consensus size: 132
300701 CGATGGGATT
* * * * * *
300711 TTTTTTAAAAAAAATTCGGGTTCGGGTCGGGTCTGATTTTTTAAAGTTTGATATTTGGGTTGGGT
1 TTTTTTAAAAAAAATTCAGGTTCGAGTCGGATCT-ATTTTTTAAAGTTTGATATTCGAGTCGGGT
***
300776 CGGGTTTTTGTAAGTGTGATATTCGGGTAGGGTCGGGGTTTTTTAAAAAAAATCGGGATTTGGTC
65 CGGGTTTTTGTAAGTGTGATATTCGGGTAGGGTCGGGGTTTAGGAAAAAAAATCGGGATTTGGTC
300841 AGA
130 AGA
*
300844 TTTTTT-AAAAAAATTTAGGTTCGAGTCGGAT-T-TTTTTTAAA-TTTGATATTCGAGTCGGGTC
1 TTTTTTAAAAAAAATTCAGGTTCGAGTCGGATCTATTTTTTAAAGTTTGATATTCGAGTCGGGTC
* *
300905 GGGTTTTTTTAAGTGTGATATTCGGGTCGGGGTC-GGGTTTAGG
66 GGGTTTTTGTAAGTGTGATATTCGGGT-AGGGTCGGGGTTTAGG
300948 GTGAAAAATA
Statistics
Matches: 91, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
128 49 0.54
129 14 0.15
131 1 0.01
132 21 0.23
133 6 0.07
ACGTcount: A:0.22, C:0.07, G:0.30, T:0.41
Consensus pattern (132 bp):
TTTTTTAAAAAAAATTCAGGTTCGAGTCGGATCTATTTTTTAAAGTTTGATATTCGAGTCGGGTC
GGGTTTTTGTAAGTGTGATATTCGGGTAGGGTCGGGGTTTAGGAAAAAAAATCGGGATTTGGTCA
GA
Found at i:301156 original size:34 final size:34
Alignment explanation
Indices: 301117--301189 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
301107 TAATATATTT
*
301117 GGGTCGGGTCTCGGGTGGAGGTTCCCTTGTTCTC
1 GGGTCGGGTCCCGGGTGGAGGTTCCCTTGTTCTC
*
301151 GGGTCGGGTCCCGGGTGGAGGTTCCTTTGTTCTC
1 GGGTCGGGTCCCGGGTGGAGGTTCCCTTGTTCTC
301185 GGGTC
1 GGGTC
301190 AGGTAGGGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.03, C:0.23, G:0.42, T:0.32
Consensus pattern (34 bp):
GGGTCGGGTCCCGGGTGGAGGTTCCCTTGTTCTC
Found at i:305496 original size:31 final size:31
Alignment explanation
Indices: 305419--305517 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
305409 TTTTTAAAAG
* * * *
305419 TTATAAAATGATCATCATATTAATCGAATTA
1 TTATAAAATGATAATTATATTTATCGAACTA
* *
305450 TTATAAAACGATAATTATATTTATTGAACTA
1 TTATAAAATGATAATTATATTTATCGAACTA
* *
305481 TTACT-AAATGATAATTACATTTGTCGAAC-A
1 TTA-TAAAATGATAATTATATTTATCGAACTA
305511 TTTATAA
1 -TTATAA
305518 TTATTGTAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
30 2 0.04
31 52 0.95
32 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.40
Consensus pattern (31 bp):
TTATAAAATGATAATTATATTTATCGAACTA
Found at i:310557 original size:29 final size:29
Alignment explanation
Indices: 310515--310573 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
310505 ATTTTCACCT
310515 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
310544 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
310573 A
1 A
310574 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:315241 original size:29 final size:29
Alignment explanation
Indices: 315199--315257 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
315189 ATTTTCACCT
315199 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
315228 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
315257 A
1 A
315258 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:318145 original size:2 final size:2
Alignment explanation
Indices: 318138--318166 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
318128 TGTATGTATG
318138 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
318167 TAAAAATCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.