Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 27 of 62
Found at i:6372906 original size:106 final size:106
Alignment explanation
Indices: 6372648--6373006 Score: 475
Period size: 106 Copynumber: 3.5 Consensus size: 106
6372638 GCGAAGGGGC
* * *
6372648 TTCCCAATTTCATAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGATAACACAAGCT
1 TTCCAAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
* * *
6372713 CAACTTCATGACGAAGGGGCGGCTGATTGTCAAC--A-AA-
66 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAAT
* ** * *
6372750 -T--AACTTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGCT
1 TTCCAAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
6372812 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAAT
66 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAAT
* * *
6372853 TTCCAAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAGCACAGGCT
1 TTCCAAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
* *
6372918 CAACTTCACGGCGAAGGGGTGACTGACTGTCAACAAACAATT
66 CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAA-T
* *
6372960 TTCC-AGTTCCAGAACCAATTTCAACTTCAC-GACGAAGGATATTGGAC
1 TTCCAAATTTCAGAACCAATTTCAACTTCACAG-CGAAGGATATTGGAC
6373007 TTAGAGCAAT
Statistics
Matches: 225, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
99 84 0.37
101 2 0.01
102 2 0.01
104 1 0.00
105 1 0.00
106 130 0.58
107 5 0.02
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (106 bp):
TTCCAAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCT
CAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAAT
Found at i:6374996 original size:4 final size:4
Alignment explanation
Indices: 6374987--6375018 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
6374977 ATTAATCCTT
6374987 TTTA TTTA TTTA TTTA -TT- TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
6375019 ACGTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 4 0.15
4 22 0.85
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:6375010 original size:14 final size:14
Alignment explanation
Indices: 6374991--6375018 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6374981 ATCCTTTTTA
6374991 TTTATTTATTTATT
1 TTTATTTATTTATT
6375005 TTTATTTATTTATT
1 TTTATTTATTTATT
6375019 ACGTTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:6377597 original size:22 final size:22
Alignment explanation
Indices: 6377546--6377597 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
6377536 GAATAAGATT
*
6377546 AAAAAATAGAAAACAAAGAAGA
1 AAAAAATAGAAAACAAAGAAAA
* *
6377568 AAATAATAGAAAA-AAATAAAA
1 AAAAAATAGAAAACAAAGAAAA
6377589 ATAAAAATA
1 A-AAAAATA
6377598 TATAATAGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAAAATAGAAAACAAAGAAAA
Found at i:6377620 original size:4 final size:4
Alignment explanation
Indices: 6377611--6377641 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
6377601 AATAGTATTT
6377611 AATA AATAA AATA AATA AATA AATA AATA AA
1 AATA AAT-A AATA AATA AATA AATA AATA AA
6377642 AGAAAAGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:6377776 original size:71 final size:70
Alignment explanation
Indices: 6377651--6377820 Score: 177
Period size: 71 Copynumber: 2.4 Consensus size: 70
6377641 AAGAAAAGGA
* *
6377651 AAAAAACAATAATGATAATATATATATATATATACACACATAAGAATGTTAAAAAACAAATAATA
1 AAAAAA-AATAAT-AT-ATATATATATATATATACACAAATAAGAATGTTAAAAAACAAATAAAA
* *
6377716 AATAAA-T
63 AAGAAACC
* * *
6377723 AAATAAAATAATATATATATATATATATATACATAAATAA-AACT-TTAGGAAAAAATAAATAAA
1 AAAAAAAATAATATATATATATATATATATACACAAATAAGAA-TGTT---AAAAAACAAATAAA
6377786 AAAGAAACC
62 AAAGAAACC
*
6377795 AAAAAAAAAAATA-ATATATATATATA
1 AAAAAAAATAATATATATATATATATA
6377821 AAAATAGTAA
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
68 4 0.05
69 25 0.30
70 2 0.02
71 37 0.44
72 16 0.19
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.26
Consensus pattern (70 bp):
AAAAAAAATAATATATATATATATATATATACACAAATAAGAATGTTAAAAAACAAATAAAAAAG
AAACC
Found at i:6380726 original size:13 final size:13
Alignment explanation
Indices: 6380708--6380749 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
6380698 TTTTCTTCTT
6380708 TTTCTTTTTTCAA
1 TTTCTTTTTTCAA
6380721 TTTCTTTTTTCAA
1 TTTCTTTTTTCAA
*
6380734 TTTCTTTTTTTAA
1 TTTCTTTTTTCAA
6380747 TTT
1 TTT
6380750 AGGGCACCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTCTTTTTTCAA
Found at i:6387907 original size:21 final size:20
Alignment explanation
Indices: 6387881--6387921 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
6387871 ATGAATGTAA
6387881 AAACATGGAAAATAGAAAAAT
1 AAACATGGAAAA-AGAAAAAT
*
6387902 AAACATGGAAAAATAAAAAT
1 AAACATGGAAAAAGAAAAAT
6387922 GCAAAGTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (20 bp):
AAACATGGAAAAAGAAAAAT
Found at i:6391406 original size:10 final size:10
Alignment explanation
Indices: 6391375--6391448 Score: 51
Period size: 10 Copynumber: 7.4 Consensus size: 10
6391365 CTCAAAAAAG
6391375 AAAAAAATAA
1 AAAAAAATAA
*
6391385 AGATAAAATAA
1 A-AAAAAATAA
* *
6391396 AACACAATAA
1 AAAAAAATAA
6391406 AAAAAAAT-A
1 AAAAAAATAA
**
6391415 AAATGAATAA
1 AAAAAAATAA
* *
6391425 AAGAAAATAG
1 AAAAAAATAA
* *
6391435 AATAAGATAA
1 AAAAAAATAA
6391445 AAAA
1 AAAA
6391449 TAAAAATAAG
Statistics
Matches: 47, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
9 7 0.15
10 31 0.66
11 9 0.19
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.14
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:6391423 original size:19 final size:19
Alignment explanation
Indices: 6391368--6391448 Score: 74
Period size: 19 Copynumber: 4.2 Consensus size: 19
6391358 ACTTAATCTC
*
6391368 AAAAAAGAAAA-AAATAAA
1 AAAAAATAAAATAAATAAA
* *
6391386 GATAAAATAAAACACAATAAA
1 -AAAAAATAAAATA-AATAAA
*
6391407 AAAAAATAAAATGAATAAA
1 AAAAAATAAAATAAATAAA
* *
6391426 AGAAAATAGAATAAGATAAA
1 AAAAAATAAAATAA-ATAAA
6391446 AAA
1 AAA
6391449 TAAAAATAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
19 26 0.52
20 18 0.36
21 6 0.12
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.12
Consensus pattern (19 bp):
AAAAAATAAAATAAATAAA
Found at i:6392872 original size:2 final size:2
Alignment explanation
Indices: 6392867--6392904 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
6392857 TGAAAAAAAA
* *
6392867 AT AT AT GT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6392905 CATACGCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6393176 original size:33 final size:35
Alignment explanation
Indices: 6393099--6393187 Score: 114
Period size: 35 Copynumber: 2.6 Consensus size: 35
6393089 CTAGAGAAAA
6393099 AAATTAAATTTAAAAGTAAAAAAAAGGTTCAAATT
1 AAATTAAATTTAAAAGTAAAAAAAAGGTTCAAATT
**
6393134 AAACCAAATTTAAAAGTAAAAAAGAA-G-T-AAATT
1 AAATTAAATTTAAAAGTAAAAAA-AAGGTTCAAATT
*
6393167 AAATTAAA-TTAAAATTAAAAA
1 AAATTAAATTTAAAAGTAAAAA
6393188 TCTAAATTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
32 12 0.25
33 11 0.23
34 1 0.02
35 22 0.46
36 2 0.04
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (35 bp):
AAATTAAATTTAAAAGTAAAAAAAAGGTTCAAATT
Found at i:6394418 original size:32 final size:33
Alignment explanation
Indices: 6394372--6394435 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
6394362 TTCGAGAAGG
* *
6394372 TCAAGTCTGAAAAACTTAGTTGATTTG-TTTCA
1 TCAAATCTGAAAAACTTAGTCGATTTGCTTTCA
*
6394404 TCAAATCTGAAAAACTTGGTCGATTTGCTTTC
1 TCAAATCTGAAAAACTTAGTCGATTTGCTTTC
6394436 TCGTCTCTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 24 0.86
33 4 0.14
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (33 bp):
TCAAATCTGAAAAACTTAGTCGATTTGCTTTCA
Found at i:6394478 original size:49 final size:49
Alignment explanation
Indices: 6394403--6394559 Score: 174
Period size: 49 Copynumber: 3.2 Consensus size: 49
6394393 GATTTGTTTC
6394403 ATCAAATCTGAAAAACTT-GGTCGATTTGCTTTC-TCGTCTCTTCGTGAAG
1 ATCAAATCTGAAAAACTTGGGT-GATTTGC-TTCATCGTCTCTTCGTGAAG
* * * *
6394452 GTCAAATCTGAAAAACTTGGGTGATTTACTTCACCGTCTCTTTGTGAAG
1 ATCAAATCTGAAAAACTTGGGTGATTTGCTTCATCGTCTCTTCGTGAAG
* * ** * * * *
6394501 TTCAAATATGAAAAACTTGATTGATTTGCTTCTTCGACTGTTCGTGAAA
1 ATCAAATCTGAAAAACTTGGGTGATTTGCTTCATCGTCTCTTCGTGAAG
6394550 ATCAAATCTG
1 ATCAAATCTG
6394560 GAAATTTTAG
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 3 0.03
49 83 0.93
50 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (49 bp):
ATCAAATCTGAAAAACTTGGGTGATTTGCTTCATCGTCTCTTCGTGAAG
Found at i:6394798 original size:95 final size:95
Alignment explanation
Indices: 6394685--6394857 Score: 222
Period size: 95 Copynumber: 1.8 Consensus size: 95
6394675 ACCATTTATT
** * * * *
6394685 TGTGAAGATTAAATCTGGAAATAT-AGTGATTCACTCTATTGTTTCTTCATGAAGGATGAATCTG
1 TGTGAAGACCAAATCTGGAAAGATGA-TGATTCACTCCATCGTCTCTTCATGAAGGATGAATCTG
* *
6394749 GAAAAGTTACTGACGTACTTAACTATTTTTA
65 AAAAAGTTAATGACGTACTTAACTATTTTTA
* * * *
6394780 TGTGAAGACCAAATCTGGAAAGATGATGATTCACTCCATCGTCTCTTCGTGGATGATGAATTTGA
1 TGTGAAGACCAAATCTGGAAAGATGATGATTCACTCCATCGTCTCTTCATGAAGGATGAATCTGA
6394845 AAAAGTTAATGAC
66 AAAAGTTAATGAC
6394858 TTGCTCTACC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
95 64 0.98
96 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (95 bp):
TGTGAAGACCAAATCTGGAAAGATGATGATTCACTCCATCGTCTCTTCATGAAGGATGAATCTGA
AAAAGTTAATGACGTACTTAACTATTTTTA
Found at i:6394919 original size:47 final size:46
Alignment explanation
Indices: 6394820--6394990 Score: 139
Period size: 47 Copynumber: 3.6 Consensus size: 46
6394810 TCACTCCATC
* * * *
6394820 GTCTCTTCGTGGATGATGAATTTGAAAAAGTTAATGACTTGCTCTACC
1 GTCTCTTCGTGAATGATGAATCTG-AAAAGTTAATGACTTGTTC-ACT
*
6394868 GTCTCTTCGTGAATGATGAATCTGAAAAGTTGATGACTTGTTGCACT
1 GTCTCTTCGTGAATGATGAATCTGAAAAGTTAATGACTTGTT-CACT
* * * * * *
6394915 GTCTCTTTGTG-ACGATCAAATTTGAAAAGATAATGA-TTCTCTCCACT
1 GTCTCTTCGTGAATGAT-GAATCTGAAAAGTTAATGACTTGT-T-CACT
* * *
6394962 ATCTCTTCATGAATGATGGATCTAGAAAA
1 GTCTCTTCGTGAATGATGAATCT-GAAAA
6394991 TTGATGATTT
Statistics
Matches: 98, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
46 7 0.07
47 59 0.60
48 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (46 bp):
GTCTCTTCGTGAATGATGAATCTGAAAAGTTAATGACTTGTTCACT
Found at i:6399222 original size:85 final size:85
Alignment explanation
Indices: 6399076--6399249 Score: 258
Period size: 85 Copynumber: 2.0 Consensus size: 85
6399066 ATTACTCATT
** * * *
6399076 TCTCATATACTCCTGTAATCTTTTCCAGCTTATTCTTAAAAGGTTGAGTCCTGATTGATTTAAAA
1 TCTCATATACTCCCATAATCTTTTCCAGCTTATTCTTAAAAGGTTAAGTCCTGACTAATTTAAAA
6399141 TAGATTTGGTCTATCAACAC
66 TAGATTTGGTCTATCAACAC
* * **
6399161 TCTCATCTACTCCCATAATCTTTTCTAGCTTATTCTTAAAATTTTAAGTCCTGACTAATTTAAAA
1 TCTCATATACTCCCATAATCTTTTCCAGCTTATTCTTAAAAGGTTAAGTCCTGACTAATTTAAAA
*
6399226 TAGATTTGGTCTATCGACAC
66 TAGATTTGGTCTATCAACAC
6399246 TCTC
1 TCTC
6399250 TTACAATGCA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (85 bp):
TCTCATATACTCCCATAATCTTTTCCAGCTTATTCTTAAAAGGTTAAGTCCTGACTAATTTAAAA
TAGATTTGGTCTATCAACAC
Found at i:6401282 original size:9 final size:9
Alignment explanation
Indices: 6401255--6401391 Score: 51
Period size: 9 Copynumber: 14.2 Consensus size: 9
6401245 AAATGTTAGG
6401255 AAAAAAATGA
1 AAAAAAAT-A
**
6401265 AAATGAATA
1 AAAAAAATA
6401274 AAAAAAATAA
1 AAAAAAAT-A
*
6401284 AAAACAAATG
1 AAAA-AAATA
* *
6401294 AAATAAAGA
1 AAAAAAATA
*
6401303 AAATAAATA
1 AAAAAAATA
* *
6401312 AATAAAGTA
1 AAAAAAATA
* *
6401321 AATAGAATA
1 AAAAAAATA
* *
6401330 AATAAAGTA
1 AAAAAAATA
6401339 AAATAAAA-A
1 AAA-AAAATA
6401348 AATAGAAATATAA
1 AA-A-AAA-AT-A
6401361 AAGGAAAAATA
1 AA--AAAAATA
*
6401372 AAGAAAATA
1 AAAAAAATA
*
6401381 AAGAAAATA
1 AAAAAAATA
6401390 AA
1 AA
6401392 GATAATAATG
Statistics
Matches: 98, Mismatches: 21, Indels: 17
0.72 0.15 0.12
Matches are distributed among these distances:
9 60 0.61
10 21 0.21
11 8 0.08
12 2 0.02
13 6 0.06
14 1 0.01
ACGTcount: A:0.75, C:0.01, G:0.09, T:0.15
Consensus pattern (9 bp):
AAAAAAATA
Found at i:6401312 original size:13 final size:13
Alignment explanation
Indices: 6401263--6401382 Score: 69
Period size: 13 Copynumber: 9.7 Consensus size: 13
6401253 GGAAAAAAAT
*
6401263 GAAAATGAATAAA
1 GAAAATAAATAAA
*
6401276 AAAAATAAA-AAA
1 GAAAATAAATAAA
*
6401288 -CAAATGAAATAAA
1 GAAAAT-AAATAAA
6401301 GAAAATAAATAAA
1 GAAAATAAATAAA
* *
6401314 TAAAGTAAAT--A
1 GAAAATAAATAAA
6401325 G--AATAAATAAA
1 GAAAATAAATAAA
*
6401336 GTAAAATAAAAAAA
1 G-AAAATAAATAAA
* *
6401350 TAGAAATATA-AAA
1 GA-AAATAAATAAA
*
6401363 G-GAA-AAATAAA
1 GAAAATAAATAAA
6401374 GAAAATAAA
1 GAAAATAAA
6401383 GAAAATAAAG
Statistics
Matches: 80, Mismatches: 15, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
11 13 0.16
12 8 0.10
13 32 0.40
14 19 0.24
ACGTcount: A:0.74, C:0.01, G:0.09, T:0.16
Consensus pattern (13 bp):
GAAAATAAATAAA
Found at i:6401329 original size:5 final size:4
Alignment explanation
Indices: 6401278--6401351 Score: 60
Period size: 4 Copynumber: 17.2 Consensus size: 4
6401268 TGAATAAAAA
* *
6401278 AAAT AAA- AAAC AAAT GAAAT AAAGA AAAT AAAT AAAT AAAGT AAAT AGAAT
1 AAAT AAAT AAAT AAAT -AAAT AAA-T AAAT AAAT AAAT AAA-T AAAT A-AAT
*
6401329 AAAT AAAGT AAAAT AAAA AAAT A
1 AAAT AAA-T -AAAT AAAT AAAT A
6401352 GAAATATAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
3 3 0.05
4 35 0.60
5 17 0.29
6 3 0.05
ACGTcount: A:0.74, C:0.01, G:0.07, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:6401392 original size:9 final size:9
Alignment explanation
Indices: 6401294--6401405 Score: 90
Period size: 9 Copynumber: 12.3 Consensus size: 9
6401284 AAAACAAATG
6401294 AAATAAAGA
1 AAATAAAGA
*
6401303 AAATAAA-T
1 AAATAAAGA
*
6401311 AAATAAAGT
1 AAATAAAGA
*
6401320 AAATAGAA-T
1 AAATA-AAGA
6401329 AAATAAAGTA
1 AAATAAAG-A
6401339 AAATAAA-A
1 AAATAAAGA
6401347 AAAT--AGA
1 AAATAAAGA
6401354 AATATAAAAGGAA
1 AA-AT-AAA-G-A
6401367 AAATAAAGA
1 AAATAAAGA
6401376 AAATAAAGA
1 AAATAAAGA
6401385 AAATAAAGA
1 AAATAAAGA
* *
6401394 TAATAATGA
1 AAATAAAGA
6401403 AAA
1 AAA
6401406 CATATATATA
Statistics
Matches: 87, Mismatches: 5, Indels: 22
0.76 0.04 0.19
Matches are distributed among these distances:
6 1 0.01
7 3 0.03
8 16 0.18
9 47 0.54
10 10 0.11
11 4 0.05
12 3 0.03
13 3 0.03
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (9 bp):
AAATAAAGA
Found at i:6401744 original size:19 final size:20
Alignment explanation
Indices: 6401715--6401779 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
6401705 ATATATAAAA
*
6401715 TAAAAAA-ATAATGATATAC
1 TAAAAAATATAATGAAATAC
*
6401734 -AAAAAATATAATAAAATAC
1 TAAAAAATATAATGAAATAC
* *
6401753 TAAAAAGTAATAATG-AATAA
1 TAAAAAAT-ATAATGAAATAC
6401773 TAAAAAA
1 TAAAAAA
6401780 ACAGAAAGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
18 6 0.16
19 10 0.27
20 16 0.43
21 5 0.14
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (20 bp):
TAAAAAATATAATGAAATAC
Found at i:6402868 original size:23 final size:24
Alignment explanation
Indices: 6402842--6402886 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
6402832 TGTAAAAAAA
6402842 ATAAAAATAAAATTA-ATAATACT
1 ATAAAAATAAAATTATATAATACT
* *
6402865 ATAAATATATAATTATATAATA
1 ATAAAAATAAAATTATATAATA
6402887 TAGTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
ATAAAAATAAAATTATATAATACT
Found at i:6403499 original size:84 final size:84
Alignment explanation
Indices: 6403344--6404482 Score: 1215
Period size: 84 Copynumber: 13.6 Consensus size: 84
6403334 TTCTTGACAT
* * * *
6403344 ATGATATGCCTTTGAGCTGAATGTAATAGAACTCGAAGGTCTTGTGG-TGACAGATAGCCCTT-T
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT-TGGTTGACAGATAACCCTTCT
*
6403407 T-CTTCTTGAGATATGCTGTAA
65 TGC--CTTGAGCTATGCTGTAA
* * * * * * * *
6403428 AAGATGTGCCTTTGAGCTGAGTGTAGTCGAACTCAAAGGCCTTTAGTTGGCATATAACCTTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* *
6403493 GCCTTGAGCTATACTGCAA
66 GCCTTGAGCTATGCTGTAA
* *
6403512 ATGATGCT-CCTTTGAGCTGAGTGTAATCGAAATCGAAGATC-TTGGTTGACAGATAACCCTTCT
1 ATGATG-TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCT
* * * *
6403575 CGCTTTAAGTTATGCTGTAA
65 TGCCTTGAGCTATGCTGTAA
* * * *
6403595 ATGATATGCCTTTGAGCTTAGTGTAATTGAACTCGAAGGTATTTGGTTAGA-AGATAACCCTTCT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTT-GACAGATAACCCTTCT
* *
6403659 TGCCTTAAGCTATGATGTAA
65 TGCCTTGAGCTATGCTGTAA
* * * *
6403679 ATGATGCGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTC-TTGGTTGATAGATAACCCTTCTC
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* *
6403743 GCCTTGAGTTATGCTGCAA
66 GCCTTGAGCTATGCTGTAA
* * * *
6403762 ATGATGCT-CCTTTGAGCTGAGTGTAATCAAATTCAAAGGTC-TTGGTTGACATATAACCCTTCT
1 ATGATG-TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCT
* * * * *
6403825 CGCTTTGAGTTATGATTTAA
65 TGCCTTGAGCTATGCTGTAA
* * *
6403845 ATGATGTGCCTTTAAGCTGAGTGTAATCGAACTCGAAGATCTTTGGTTGACAGATAACTCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* * *
6403910 GCCTTAAGTTATGCTGCAA
66 GCCTTGAGCTATGCTGTAA
* * * * * *
6403929 ATGATGCGCCTTTGAGATGAATGTAATCAAACTTGAAGGTC-TTGGTTGACAGATAACCCTTCTC
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* *
6403993 GCCTTGAGTTATGTTGTAA
66 GCCTTGAGCTATGCTGTAA
* * * * * * *
6404012 ATGATATGCCTCTGAGTTGATTGTAATCGAACTCGAAGGTCTTT-GATGACATATAACCCTTCTC
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* *
6404076 GCCTTGAGTTATGTTGTAA
66 GCCTTGAGCTATGCTGTAA
* * * **
6404095 ATGACGTGCCTTTGAGCTGAGTGTAATCGAAATTGAAGGTCTTTTATTGACAGATAACCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
*
6404160 GCCTTGAGCTATGCTGCAA
66 GCCTTGAGCTATGCTGTAA
* * * *
6404179 ATGACGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
*
6404244 GCCTTGAGCTATGCTGCAA
66 GCCTTGAGCTATGCTGTAA
** * * * *
6404263 AACATGTGCCTTTGAGCTGAGTGTAATCAAACTTGAAGCTCTTTTGTTTG-CAGATAGA-CCTTC
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGGTTGACAGATA-ACCCTTC
* * * *
6404326 TTTCCTTAAGCTATGCTTTAG
64 TTGCCTTGAGCTATGCTGTAA
* * * * ** *
6404347 ATGATGTACCTTTGAGCTGAGTGTAATTGAACTCGAAGGTTTTTTGTTGGTAGATAGCCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* *
6404412 TCCTTGAGCTATACTGTAA
66 GCCTTGAGCTATGCTGTAA
* * *
6404431 ATTTGATGTACCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGA
1 A--TGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGA
6404483 AGGTGATTTT
Statistics
Matches: 888, Mismatches: 148, Indels: 36
0.83 0.14 0.03
Matches are distributed among these distances:
82 4 0.00
83 359 0.40
84 468 0.53
85 11 0.01
86 46 0.05
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (84 bp):
ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
GCCTTGAGCTATGCTGTAA
Found at i:6403683 original size:167 final size:167
Alignment explanation
Indices: 6403344--6404482 Score: 1198
Period size: 167 Copynumber: 6.8 Consensus size: 167
6403334 TTCTTGACAT
* * * * * *
6403344 ATGATATGCCTTTGAGCTGAATGTAATAGAACTCGAAGGTCTTGTGGTGACAGATAGCCCTTTTC
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTG-GTTGACAGATAACCCTTCTC
** * * * * * * * *
6403409 TTCTTGAGATATGCTGTAAAAGATGTGCCTTTGAGCTGAGTGTAGTCGAACTCAAAGGCCTTTAG
65 GCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTGG
* * * *
6403474 TTGGCATATAACCTTTCTTGCCTTGAGCTAT-ACTGCAA
130 TTGACAGATAACCCTTCTTGCCTTGAGCTATGA-TGTAA
* *
6403512 ATGATGCT-CCTTTGAGCTGAGTGTAATCGAAATCGAAGATCTTGGTTGACAGATAACCCTTCTC
1 ATGATG-TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTC
* * * * * ** *
6403576 GCTTTAAGTTATGCTGTAAATGATATGCCTTTGAGCTTAGTGTAATTGAACTCGAAGGTATTTGG
65 GCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTGG
*
6403641 TTAGA-AGATAACCCTTCTTGCCTTAAGCTATGATGTAA
130 TT-GACAGATAACCCTTCTTGCCTTGAGCTATGATGTAA
* * *
6403679 ATGATGCGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTGGTTGATAGATAACCCTTCTCG
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCG
* *
6403744 CCTTGAGTTATGCTGCAAATGATGCT-CCTTTGAGCTGAGTGTAATCAAATTCAAAGGTC-TTGG
66 CCTTGAGTTATGCTGCAAATGATG-TGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTGG
* * * * *
6403807 TTGACATATAACCCTTCTCGCTTTGAGTTATGATTTAA
130 TTGACAGATAACCCTTCTTGCCTTGAGCTATGATGTAA
* * * *
6403845 ATGATGTGCCTTTAAGCTGAGTGTAATCGAACTCGAAGATCTTTGGTTGACAGATAACTCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTGGTTGACAGATAACCCTTCTC
* * * * *
6403910 GCCTTAAGTTATGCTGCAAATGATGCGCCTTTGAGATGAATGTAATCAAACTTGAAGGTC-TTGG
65 GCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTGG
* * *
6403974 TTGACAGATAACCCTTCTCGCCTTGAGTTATGTTGTAA
130 TTGACAGATAACCCTTCTTGCCTTGAGCTATGATGTAA
* * * * * * *
6404012 ATGATATGCCTCTGAGTTGATTGTAATCGAACTCGAAGGTCTTTGATGACATATAACCCTTCTCG
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCG
* * * * **
6404077 CCTTGAGTTATGTTGTAAATGACGTGCCTTTGAGCTGAGTGTAATCGAAA-TTGAAGGTCTTTTA
66 CCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATC-AAACTCGAAGGTCTTTGG
* *
6404141 TTGACAGATAACCCTTCTTGCCTTGAGCTATGCTGCAA
130 TTGACAGATAACCCTTCTTGCCTTGAGCTATGATGTAA
* * * * *
6404179 ATGACGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTGGTTGACAGATAACCCTTCTC
* ** * *
6404244 GCCTTGAGCTATGCTGCAAAACATGTGCCTTTGAGCTGAGTGTAATCAAACTTGAAGCTCTTTTG
65 GCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTC-TTTG
* * * * * *
6404309 TTTG-CAGATAGA-CCTTCTTTCCTTAAGCTATGCTTTAG
129 GTTGACAGATA-ACCCTTCTTGCCTTGAGCTATGATGTAA
* * * * ** * *
6404347 ATGATGTACCTTTGAGCTGAGTGTAATTGAACTCGAAGGTTTTTTGTTGGTAGATAGCCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG-TCTTGGTTGACAGATAACCCTTCTC
* * * * * * *
6404412 TCCTTGAGCTATACTGTAAATTTGATGTACCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTT
65 GCCTTGAGTTATGCTGCAAA--TGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTT
*
6404477 TGTTGA
128 GGTTGA
6404483 AGGTGATTTT
Statistics
Matches: 822, Mismatches: 131, Indels: 34
0.83 0.13 0.03
Matches are distributed among these distances:
165 2 0.00
166 137 0.17
167 426 0.52
168 209 0.25
169 15 0.02
170 33 0.04
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (167 bp):
ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCG
CCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTGGT
TGACAGATAACCCTTCTTGCCTTGAGCTATGATGTAA
Found at i:6403807 original size:250 final size:251
Alignment explanation
Indices: 6403344--6404475 Score: 1262
Period size: 250 Copynumber: 4.5 Consensus size: 251
6403334 TTCTTGACAT
* * * *
6403344 ATGATATGCCTTTGAGCTGAATGTAATAGAACTCGAAGGTCTTGTGG-TGACAGATAGCCCTT-T
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT-TGGTTGACAGATAACCCTTCT
* * * * *
6403407 T-CTTCTTGAGATATGCTGTAAAAGATGTGCCTTTGAGCTGAGTGTAGTCGAACTCAAAGGCCTT
65 TGC--CTTGAGCTATGCTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-T
* * * * * *
6403471 TAGTTGGCATATAACCTTTCTTGCCTTGAGCTATACTGCAAATGATGCT-CCTTTGAGCTGAGTG
127 TGGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATGCTGCCTTTGAGCTGAGTG
* *
6403535 TAATCGAAA-TCGAAGATCTTGGTTGACAGATAACCCTTCTCGCTTTAAGTTATGCTGTAA
192 TAATC-AAATTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGCTGTAA
* * * *
6403595 ATGATATGCCTTTGAGCTTAGTGTAATTGAACTCGAAGGTATTTGGTTAGA-AGATAACCCTTCT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTT-GACAGATAACCCTTCT
* * * *
6403659 TGCCTTAAGCTATGATGTAAATGATGCGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTGG
65 TGCCTTGAGCTATGCTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGG
* *
6403724 TTGATAGATAACCCTTCTCGCCTTGAGTTATGCTGCAAATGATGCT-CCTTTGAGCTGAGTGTAA
130 TTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATGCTGCCTTTGAGCTGAGTGTAA
* * * * * *
6403788 TCAAATTCAAAGGTCTTGGTTGACATATAACCCTTCTCGCTTTGAGTTATGATTTAA
195 TCAAATTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGCTGTAA
* * *
6403845 ATGATGTGCCTTTAAGCTGAGTGTAATCGAACTCGAAGATCTTTGGTTGACAGATAACTCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* * * * * * * *
6403910 GCCTTAAGTTATGCTGCAAATGATGCGCCTTTGAGATGAATGTAATCAAACTTGAAGGTCTTGGT
66 GCCTTGAGCTATGCTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGT
* * * * * * *
6403975 TGACAGATAACCCTTCTCGCCTTGAGTTATGTTGTAAATGAT-ATGCCTCTGAGTTGATTGTAAT
131 TGACAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATGCTGCCTTTGAGCTGAGTGTAAT
* * * * * * *
6404039 CGAACTCGAAGGTCTTTGATGACATATAACCCTTCTCGCCTTGAGTTATGTTGTAA
196 CAAATTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGCTGTAA
* * * **
6404095 ATGACGTGCCTTTGAGCTGAGTGTAATCGAAATTGAAGGTCTTTTATTGACAGATAACCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* * *
6404160 GCCTTGAGCTATGCTGCAAATGACGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTG
66 GCCTTGAGCTATGCTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTGG
* * * **
6404225 TTGGCAGATAGCCCTTCTTGCCTTGAGCTATGCTGCAAAACATG-TGCCTTTGAGCTGAGTGTAA
130 TTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATGCTGCCTTTGAGCTGAGTGTAA
* * ** * * *
6404289 TCAAACTT-GAAGCTCTTTTGTTTG-CAGATAGA-CCTTCTTTCCTTAAGCTATGCTTTAG
195 TCAAA-TTCGAAGGTC--TTGGTTGACAGATA-ACCCTTCTCGCCTTAAGTTATGCTGTAA
* * * * ** *
6404347 ATGATGTACCTTTGAGCTGAGTGTAATTGAACTCGAAGGTTTTTTGTTGGTAGATAGCCCTTCTT
1 ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
* * * *
6404412 TCCTTGAGCTATACTGTAAATTTGATGTACCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTT
66 GCCTTGAGCTATGCTGTAAA--TGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT
6404476 TTGTTGAAGG
Statistics
Matches: 752, Mismatches: 114, Indels: 28
0.84 0.13 0.03
Matches are distributed among these distances:
249 6 0.01
250 436 0.58
251 164 0.22
252 101 0.13
253 8 0.01
254 37 0.05
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (251 bp):
ATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTT
GCCTTGAGCTATGCTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGT
TGACAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATGCTGCCTTTGAGCTGAGTGTAAT
CAAATTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGCTGTAA
Found at i:6406887 original size:14 final size:13
Alignment explanation
Indices: 6406868--6406926 Score: 66
Period size: 14 Copynumber: 4.5 Consensus size: 13
6406858 AAGTAAATAG
6406868 AATAAATAAAGTAA
1 AATAAATAAAG-AA
* *
6406882 AATAAAAAAATAGA
1 AATAAATAAAGA-A
*
6406896 AATAAAAAAAGAA
1 AATAAATAAAGAA
6406909 AA-AAATAAAGAA
1 AATAAATAAAGAA
6406921 AATAAA
1 AATAAA
6406927 GACAATAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
12 11 0.28
13 7 0.18
14 21 0.54
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (13 bp):
AATAAATAAAGAA
Found at i:6406898 original size:24 final size:22
Alignment explanation
Indices: 6406849--6406915 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
6406839 TAAATCAAAC
*
6406849 AAATAAAAAAAGTAAATAGAAT--
1 AAATAAAAAAAG-AAA-AAAATAG
*
6406871 AAATAAAGTAAAATAAAAAAATAG
1 AAATAAA--AAAAGAAAAAAATAG
6406895 AAATAAAAAAAGAAAAAAATA
1 AAATAAAAAAAGAAAAAAATA
6406916 AAGAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 24 0.63
23 3 0.08
24 11 0.29
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (22 bp):
AAATAAAAAAAGAAAAAAATAG
Found at i:6406922 original size:9 final size:9
Alignment explanation
Indices: 6406871--6406934 Score: 59
Period size: 8 Copynumber: 7.7 Consensus size: 9
6406861 TAAATAGAAT
6406871 AAATAAAGTA
1 AAATAAAG-A
6406881 AAATAAA-A
1 AAATAAAGA
6406889 AAAT--AG-
1 AAATAAAGA
6406895 AAATAAA-A
1 AAATAAAGA
*
6406903 AAAGAAA-A
1 AAATAAAGA
6406911 AAATAAAGA
1 AAATAAAGA
6406920 AAATAAAGA
1 AAATAAAGA
*
6406929 CAATAA
1 AAATAA
6406935 TGACAACATA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
6 5 0.11
8 19 0.41
9 15 0.33
10 7 0.15
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.12
Consensus pattern (9 bp):
AAATAAAGA
Found at i:6406949 original size:2 final size:2
Alignment explanation
Indices: 6406942--6406981 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
6406932 TAATGACAAC
6406942 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6406982 GCAAGATAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6412669 original size:38 final size:39
Alignment explanation
Indices: 6412579--6412794 Score: 161
Period size: 39 Copynumber: 5.6 Consensus size: 39
6412569 GAAATAAATA
* * * * * * *
6412579 TTGTCTCCCTTGAAACAAAGATTTCATTTCCCTTGAGAC
1 TTGTTTCCCTTGAAACATATATTTTATCTCTCTTAAGAC
* *
6412618 ATGTTTCCTTTGAAACATATATTTTATCT-TCTTAAGAC
1 TTGTTTCCCTTGAAACATATATTTTATCTCTCTTAAGAC
* * * * * *
6412656 CTATTTCCCTTGAAACATAGATTTTGTCTCCCTTGAGAC
1 TTGTTTCCCTTGAAACATATATTTTATCTCTCTTAAGAC
* * * *
6412695 TTGTTTCCCTTAAAACATAGATTTT-GCTTCTCTTGAGAC
1 TTGTTTCCCTTGAAACATATATTTTATC-TCTCTTAAGAC
* * * * *
6412734 ATGTTTCTCC-TGAAACACATATTTTATAT-TCTTACGAT
1 TTGTTTC-CCTTGAAACATATATTTTATCTCTCTTAAGAC
*
6412772 TTGTTTCCCTTGAAATATATATT
1 TTGTTTCCCTTGAAACATATATT
6412795 GTCTCCCTTA
Statistics
Matches: 139, Mismatches: 33, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
37 2 0.01
38 55 0.40
39 80 0.58
40 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (39 bp):
TTGTTTCCCTTGAAACATATATTTTATCTCTCTTAAGAC
Found at i:6412712 original size:39 final size:39
Alignment explanation
Indices: 6412584--6412760 Score: 171
Period size: 39 Copynumber: 4.6 Consensus size: 39
6412574 AAATATTGTC
* * *
6412584 TCCCTTGAAACAAAGATTTCATTTCCCTTGAGACATGTT
1 TCCCTTGAAACATAGATTTTATCTCCCTTGAGACATGTT
* * * * * *
6412623 TCCTTTGAAACATATATTTTATCT-TCTTAAGACCTATT
1 TCCCTTGAAACATAGATTTTATCTCCCTTGAGACATGTT
* *
6412661 TCCCTTGAAACATAGATTTTGTCTCCCTTGAGACTTGTT
1 TCCCTTGAAACATAGATTTTATCTCCCTTGAGACATGTT
* * *
6412700 TCCCTTAAAACATAGATTTT-GCTTCTCTTGAGACATGTT
1 TCCCTTGAAACATAGATTTTATC-TCCCTTGAGACATGTT
* *
6412739 TCTCC-TGAAACACATATTTTAT
1 TC-CCTTGAAACATAGATTTTAT
6412761 ATTCTTACGA
Statistics
Matches: 110, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
38 32 0.29
39 76 0.69
40 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (39 bp):
TCCCTTGAAACATAGATTTTATCTCCCTTGAGACATGTT
Found at i:6412801 original size:21 final size:22
Alignment explanation
Indices: 6412769--6412843 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 22
6412759 ATATTCTTAC
*
6412769 GATTTGTTTCCCTTGAAATATA
1 GATTTGTCTCCCTTGAAATATA
* *
6412791 TA-TTGTCTCCCTTAAAATATA
1 GATTTGTCTCCCTTGAAATATA
* * *
6412812 GATTTTTCTCCCTTGAAACACA
1 GATTTGTCTCCCTTGAAATATA
6412834 GATTTTGTCT
1 GA-TTTGTCT
6412844 TGCTTGAACC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
21 18 0.43
22 18 0.43
23 6 0.14
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.44
Consensus pattern (22 bp):
GATTTGTCTCCCTTGAAATATA
Found at i:6412824 original size:22 final size:22
Alignment explanation
Indices: 6412769--6412839 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
6412759 ATATTCTTAC
6412769 GATTTGTT-TCCCTTGAAATATA
1 GATTT-TTCTCCCTTGAAATATA
* * *
6412791 TA-TTGTCTCCCTTAAAATATA
1 GATTTTTCTCCCTTGAAATATA
* *
6412812 GATTTTTCTCCCTTGAAACACA
1 GATTTTTCTCCCTTGAAATATA
6412834 GATTTT
1 GATTTT
6412840 GTCTTGCTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.03
21 16 0.41
22 22 0.56
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (22 bp):
GATTTTTCTCCCTTGAAATATA
Found at i:6414303 original size:19 final size:19
Alignment explanation
Indices: 6414279--6414475 Score: 73
Period size: 19 Copynumber: 10.3 Consensus size: 19
6414269 GGGATTTTCA
6414279 TTTATATTTATATTATATT
1 TTTATATTTATATTATATT
*
6414298 TTTATA-GTATTATTATATAT
1 TTTATATTTA-TATTATAT-T
* * ** *
6414318 ATTATATATTGTATGGTATA
1 TTTATAT-TTATATTATATT
* * *
6414338 TATATATATATATAATATT
1 TTTATATTTATATTATATT
* *
6414357 ATGGTATATATTATAGTATA-T
1 -T-TTATAT-TTATATTATATT
* *
6414378 ATTATATTTATATCATA-T
1 TTTATATTTATATTATATT
** *
6414396 AGTAT-TAT-TATTACTATT
1 TTTATATTTATATTA-TATT
* * *
6414414 TATATATATATATTATA-G
1 TTTATATTTATATTATATT
* *
6414432 TATATGTATTATATTATATT
1 TTTATAT-TTATATTATATT
* *
6414452 ATTATATTTATATTATATA
1 TTTATATTTATATTATATT
6414471 TTTAT
1 TTTAT
6414476 TTATTATTTT
Statistics
Matches: 129, Mismatches: 36, Indels: 26
0.68 0.19 0.14
Matches are distributed among these distances:
16 4 0.03
17 4 0.03
18 25 0.19
19 55 0.43
20 21 0.16
21 12 0.09
22 8 0.06
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTATATTTATATTATATT
Found at i:6414318 original size:2 final size:2
Alignment explanation
Indices: 6414281--6414471 Score: 94
Period size: 2 Copynumber: 100.5 Consensus size: 2
6414271 GATTTTCATT
* * *
6414281 TA TA TT TA TA T- TA TA TT TT TA TA GTA T- TA T- TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * *
6414320 TA TA TA T- TG TA TGG TA TA TA TA TA TA TA TA TA -A TA T- TA TGG
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
*
6414361 TA TA TA T- TA TA GTA TA TA T- TA TA TT TA TA TCA TA TA GTA T-
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA T-A TA TA -TA TA
* *
6414401 TA T- TA T- TA CTA TT TA TA TA TA TA TA T- TA TA GTA TA TG TA T-
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
*
6414441 TA TA T- TA TA T- TA T- TA TA TT TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6414472 TTATTTATTA
Statistics
Matches: 146, Mismatches: 17, Indels: 52
0.68 0.08 0.24
Matches are distributed among these distances:
1 18 0.12
2 114 0.78
3 14 0.10
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.55
Consensus pattern (2 bp):
TA
Found at i:6414344 original size:53 final size:52
Alignment explanation
Indices: 6414280--6414476 Score: 155
Period size: 53 Copynumber: 3.8 Consensus size: 52
6414270 GGATTTTCAT
* *
6414280 TTATATTTATATTA-TATTTTTATAGTATTATTATATATATTATATATTGTA
1 TTATATATATATTATTATTATTATAGTATTATTATATATATTATATATTGTA
* * * *
6414331 TGGTATATATATATATATATAATATTATGGTA-TA-TAT-TATAGTATATATTATA
1 T--TATATATATAT-TAT-TATTATTATAGTATTATTATATATATTATATATTGTA
*
6414384 TTTATATCATATAGTATTATTATTACTA-T-TTATATATATATATTATAGTATATGTA
1 -TTATAT-ATATATTATTATTATTA-TAGTATTAT-TATATATATTATA-TAT-TGTA
*
6414440 TTATAT-TATATTATTA-TATT-TA-TATTA-TATATTTATT
1 TTATATATATATTATTATTATTATAGTATTATTATATATATT
6414477 TATTATTTTG
Statistics
Matches: 118, Mismatches: 13, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
49 9 0.08
50 3 0.03
51 14 0.12
52 13 0.11
53 41 0.35
54 14 0.12
55 11 0.09
56 13 0.11
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (52 bp):
TTATATATATATTATTATTATTATAGTATTATTATATATATTATATATTGTA
Found at i:6414493 original size:26 final size:26
Alignment explanation
Indices: 6414278--6414483 Score: 115
Period size: 27 Copynumber: 7.6 Consensus size: 26
6414268 TGGGATTTTC
*
6414278 ATTTATATT-TATATTATATTTTTAT
1 ATTTATATTATATATTATATTATTAT
*
6414303 AGTATTAT-TATATATATTATA-TATTGT
1 A-T-TTATAT-TATATATTATATTATTAT
* *
6414330 ATGGTATATATATATATATATAATATTAT
1 AT-TTATAT-TATATAT-TATATTATTAT
** *
6414359 -GGTATA-TATTATAGTATA-TATTAT
1 ATTTATATTA-TATATTATATTATTAT
* *
6414383 ATTTATATCATATAGTATTATTATTACT
1 ATTTATATTATATATTA-TATTATTA-T
6414411 ATTTATATATATATATTATAGTATATGTATT
1 ATTTATAT-TATATATTATA-T-TAT-TA-T
6414442 ATATTATATTATTATATTTATATTA-TAT
1 AT-TTATATTA-TATA-TTATATTATTAT
6414470 ATTTAT-TTAT-TATT
1 ATTTATATTATATATT
6414484 TTGATTTTAT
Statistics
Matches: 148, Mismatches: 13, Indels: 42
0.73 0.06 0.21
Matches are distributed among these distances:
23 2 0.01
24 8 0.05
25 19 0.13
26 16 0.11
27 33 0.22
28 27 0.18
29 15 0.10
30 3 0.02
31 9 0.06
32 11 0.07
33 5 0.03
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.57
Consensus pattern (26 bp):
ATTTATATTATATATTATATTATTAT
Found at i:6414984 original size:21 final size:23
Alignment explanation
Indices: 6414951--6414994 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
6414941 AGCGATTTGA
6414951 TGAACCAAAATCAAT-GCCAAAT
1 TGAACCAAAATCAATGGCCAAAT
*
6414973 TGAACC-AAATCAGTGGCCAAAT
1 TGAACCAAAATCAATGGCCAAAT
6414995 CTCAAGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.45, C:0.23, G:0.14, T:0.18
Consensus pattern (23 bp):
TGAACCAAAATCAATGGCCAAAT
Found at i:6425891 original size:59 final size:60
Alignment explanation
Indices: 6425758--6425893 Score: 145
Period size: 59 Copynumber: 2.3 Consensus size: 60
6425748 AGAGCTGCAT
* ** *
6425758 CCATAAGGACTTACCCTAGGCCCAAAGGGCGTAGGTGCCAACCTAATGGAGCACCTTGGGT
1 CCATAAGGACTTACCCTAGGCCCAAA-GGCGTAGGTGCCAACCTAAGGGAGCACCTCAGGC
* * *
6425819 CCATAAGGTCTTACCCT-TG-CCAAA-GCGTAGGTGCCCACCTAAAGGGAGTGC-CCTCAGGC
1 CCATAAGGACTTACCCTAGGCCCAAAGGCGTAGGTGCCAACCT-AAGGGA--GCACCTCAGGC
6425878 CCATAAGGACTTACCC
1 CCATAAGGACTTACCC
6425894 AATACACACA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
57 15 0.23
58 5 0.08
59 25 0.39
60 3 0.05
61 16 0.25
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (60 bp):
CCATAAGGACTTACCCTAGGCCCAAAGGCGTAGGTGCCAACCTAAGGGAGCACCTCAGGC
Found at i:6433749 original size:2 final size:2
Alignment explanation
Indices: 6433731--6433922 Score: 110
Period size: 2 Copynumber: 99.5 Consensus size: 2
6433721 GACTTTTATT
* *
6433731 TA TA TT TA TA T- TA TA TA TA T- TA TA TA TA T- TA TA T- TT TCA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* *
6433770 TA GTA T- TA T- TA T- TA TA TA TA TA TA TA T- TA TA T- TG TA TGG
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* *
6433809 TA TGA TA TA TA TA TA -A TA TA TA TA T- TA TCA TGG TGC TA TA TA
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T-A T-A T-A TA TA TA
* * *
6433851 TA TA TA TA TGG TA AA TA T- TA TA -A TA TA TG TA T- TA TA T- TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6433890 TA TA TA TA TA -A GTA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA T
6433923 TTATTTATTA
Statistics
Matches: 151, Mismatches: 16, Indels: 46
0.71 0.08 0.22
Matches are distributed among these distances:
1 16 0.11
2 122 0.81
3 13 0.09
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6433781 original size:37 final size:36
Alignment explanation
Indices: 6433739--6433836 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 36
6433729 TTTATATTTA
*
6433739 TATTATATATATTATATATATTATATTTTCATAGTAT
1 TATTATATATATTATATATATTATATTGT-ATAGTAT
*
6433776 TATTAT-TATATATATATATATTATATTGTATGGTAT
1 TATTATATATAT-TATATATATTATATTGTATAGTAT
* *
6433812 GATATATATATAATATATATATTAT
1 TAT-TATATATATTATATATATTAT
6433837 CATGGTGCTA
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
36 13 0.24
37 37 0.69
38 4 0.07
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.54
Consensus pattern (36 bp):
TATTATATATATTATATATATTATATTGTATAGTAT
Found at i:6433854 original size:37 final size:36
Alignment explanation
Indices: 6433737--6433916 Score: 113
Period size: 37 Copynumber: 4.8 Consensus size: 36
6433727 TATTTATATT
* ** *
6433737 TATAT-TATATATATTATATATATTATATTTTCATA
1 TATATATATATATAATATATATATTATATGGTGATA
* *
6433772 GTAT-TAT-TATTATATATATATATATTATATTGT-ATGG
1 -TATATATATA-TATA-ATATATATATTATATGGTGAT-A
6433809 TATGATATATATATAATATATATATTATCATGGTGCTATA
1 TAT-ATATATATATAATATATATATTAT-ATGGTG--ATA
* *
6433849 TATATATATATGGTAA-ATATTATAATATAT-GT-ATTA
1 TATATATATAT-ATAATATA-TATATTATATGGTGA-TA
6433885 TATTATATATATATAAGTATATATATATATAT
1 TA-TATATATATATAA-TATATATAT-TATAT
6433917 ATATATTTAT
Statistics
Matches: 117, Mismatches: 9, Indels: 34
0.73 0.06 0.21
Matches are distributed among these distances:
35 4 0.03
36 20 0.17
37 42 0.36
38 21 0.18
39 15 0.13
40 13 0.11
41 2 0.02
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.51
Consensus pattern (36 bp):
TATATATATATATAATATATATATTATATGGTGATA
Found at i:6441751 original size:81 final size:81
Alignment explanation
Indices: 6441636--6442464 Score: 1275
Period size: 81 Copynumber: 10.2 Consensus size: 81
6441626 AAAGCACAGT
* * * * * *
6441636 TAGGTATTTAGTCTTTTATCCCAAAGGTATTTAACATTTCATCTAACTTGCATGATTGAAACCTT
1 TAGGCATTTAATCTTTTA-CTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTT
* *
6441701 TATGTCAAATGCACATC
65 TCTGTCAAATGCACAAC
* * *
6441718 TAGGCATTTAAACTTTTACCCAAAGGTATTTAACCTTTCATTTAACTGGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
6441783 CTGTCAAATGCA-AAGC
66 CTGTCAAATGCACAA-C
* *
6441799 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTTACCTAACTGGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
* *
6441864 ATGTCAAATGCACGAC
66 CTGTCAAATGCACAAC
* * *
6441880 TAAGCATTTAATCTTGTACTCAAAGGTATTTAACCTTTCATCTAACTGGCACGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
6441945 CTGTCAAATGCA-AAGC
66 CTGTCAAATGCACAA-C
* * *
6441961 TAGACATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTATCTAGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
6442026 CTGTCAAATGCACAAC
66 CTGTCAAATGCACAAC
*
6442042 TAGGCATTTAATCTTTTACTCAAATGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
*
6442107 CTGTCAAATGCACAGC
66 CTGTCAAATGCACAAC
* *
6442123 TAGGCATTTAATCTTTTACTCATAGGTATTTAACCTTTCATCTAACTAGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
* *
6442188 CTGTCAAATACACATC
66 CTGTCAAATGCACAAC
* * * * *
6442204 TAAGCATTTAATCTTCTACTCAAAGGTATTTAACGTTTCATATATCTGGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
6442269 CTGTCAAATGCACAAC
66 CTGTCAAATGCACAAC
* *
6442285 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTTGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
*
6442350 TTGTCAAATGCACAAC
66 CTGTCAAATGCACAAC
6442366 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
1 TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
* *
6442431 CTATCAAATGCAGAAC
66 CTGTCAAATGCACAAC
*
6442447 TAGGCATTTAGTCTTTTA
1 TAGGCATTTAATCTTTTA
6442465 TTTTAAAACA
Statistics
Matches: 681, Mismatches: 62, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
80 2 0.00
81 661 0.97
82 18 0.03
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (81 bp):
TAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
CTGTCAAATGCACAAC
Found at i:6447067 original size:12 final size:12
Alignment explanation
Indices: 6447046--6447114 Score: 59
Period size: 12 Copynumber: 5.8 Consensus size: 12
6447036 ATTACCTGAA
*
6447046 TTCTGTTATGAT
1 TTCTGATATGAT
6447058 TTCTGATATGGA-
1 TTCTGATAT-GAT
*
6447070 TTCTGTTATGAT
1 TTCTGATATGAT
* * *
6447082 ATCTGATTTGAA
1 TTCTGATATGAT
* *
6447094 TTCTGTTTTGAT
1 TTCTGATATGAT
6447106 TTCTGATAT
1 TTCTGATAT
6447115 CTCCGTTTAC
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
11 2 0.05
12 40 0.91
13 2 0.05
ACGTcount: A:0.20, C:0.09, G:0.17, T:0.54
Consensus pattern (12 bp):
TTCTGATATGAT
Found at i:6447072 original size:24 final size:24
Alignment explanation
Indices: 6447042--6447114 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
6447032 ATACATTACC
6447042 TGAATTCTGTTATGATTTCTGATA
1 TGAATTCTGTTATGATTTCTGATA
* * *
6447066 TGGATTCTGTTATGATATCTGATT
1 TGAATTCTGTTATGATTTCTGATA
*
6447090 TGAATTCTGTTTTGATTTCTGATA
1 TGAATTCTGTTATGATTTCTGATA
6447114 T
1 T
6447115 CTCCGTTTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.22, C:0.08, G:0.18, T:0.52
Consensus pattern (24 bp):
TGAATTCTGTTATGATTTCTGATA
Found at i:6447082 original size:48 final size:48
Alignment explanation
Indices: 6447021--6447114 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
6447011 TCCAACTTGA
* *
6447021 ATTCTGTTTTGATA-CATTACCTGAATTCTGTTATGATTTCTGATATGG
1 ATTCTGTTATGATATC-TGACCTGAATTCTGTTATGATTTCTGATATGG
** *
6447069 ATTCTGTTATGATATCTGATTTGAATTCTGTTTTGATTTCTGATAT
1 ATTCTGTTATGATATCTGACCTGAATTCTGTTATGATTTCTGATAT
6447115 CTCCGTTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 39 0.98
49 1 0.03
ACGTcount: A:0.22, C:0.11, G:0.16, T:0.51
Consensus pattern (48 bp):
ATTCTGTTATGATATCTGACCTGAATTCTGTTATGATTTCTGATATGG
Found at i:6451586 original size:24 final size:24
Alignment explanation
Indices: 6451551--6451616 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
6451541 GATACATTAC
*
6451551 CTGAATTTTGTTCTGATTTTTGAT
1 CTGAATTCTGTTCTGATTTTTGAT
* **
6451575 CTGGATTCTGTTCTGAAATTTGAT
1 CTGAATTCTGTTCTGATTTTTGAT
*
6451599 CTGAATTCTGTTTTGATT
1 CTGAATTCTGTTCTGATT
6451617 CTGATATCTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.53
Consensus pattern (24 bp):
CTGAATTCTGTTCTGATTTTTGAT
Found at i:6453240 original size:13 final size:13
Alignment explanation
Indices: 6453222--6453286 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
6453212 GTCCTGAATC
6453222 TATGACGCCCATT
1 TATGACGCCCATT
***
6453235 TATGACATGCATT
1 TATGACGCCCATT
* *
6453248 TATGATGCACATT
1 TATGACGCCCATT
* *
6453261 TATGACACGCATT
1 TATGACGCCCATT
*
6453274 TATGACGTCCATT
1 TATGACGCCCATT
6453287 GCGCGTCATT
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (13 bp):
TATGACGCCCATT
Found at i:6453260 original size:26 final size:26
Alignment explanation
Indices: 6453222--6453280 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
6453212 GTCCTGAATC
* *
6453222 TATGACGCCCATTTATGACATGCATT
1 TATGACGCACATTTATGACACGCATT
*
6453248 TATGATGCACATTTATGACACGCATT
1 TATGACGCACATTTATGACACGCATT
6453274 TATGACG
1 TATGACG
6453281 TCCATTGCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (26 bp):
TATGACGCACATTTATGACACGCATT
Found at i:6453355 original size:85 final size:85
Alignment explanation
Indices: 6453258--6453480 Score: 297
Period size: 85 Copynumber: 2.6 Consensus size: 85
6453248 TATGATGCAC
* * *
6453258 ATTTATGACACGCATTTATGACGTCCATTGCGCGTCATTGAAGCCCCCGTCATAAAT-TAAG-AT
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATCT--GCAT
6453321 GACACACATTTGTGTGTCATAA
64 GACACACATTTGTGTGTCATAA
* * *
6453343 ATTTATGACACGCATGTATGACTTACATTGAGCGTCGTTGAAGCCCCCGTCATAAATCTGCTTGA
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATCTGCATGA
*
6453408 CATACATTTGTGTGTCATAA
66 CACACATTTGTGTGTCATAA
* * * * * *
6453428 ATTTATAACACGCGTGTATGACTTATATTGCGTGTCATTGAAGCACGCGTCAT
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCAT
6453481 TTAAAAAAAC
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
84 1 0.01
85 119 0.98
86 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (85 bp):
ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATCTGCATGA
CACACATTTGTGTGTCATAA
Found at i:6457760 original size:15 final size:15
Alignment explanation
Indices: 6457735--6457790 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
6457725 GATGCTTTCT
*
6457735 TTTTCCTTCTTTGACA
1 TTTT-CTTCTTTGACG
*
6457751 TTTTCTTCTTTAACG
1 TTTTCTTCTTTGACG
*
6457766 TTTTCTTCTTAGACG
1 TTTTCTTCTTTGACG
*
6457781 TTGTCTTCTT
1 TTTTCTTCTT
6457791 ACCCATTGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
15 31 0.89
16 4 0.11
ACGTcount: A:0.11, C:0.21, G:0.09, T:0.59
Consensus pattern (15 bp):
TTTTCTTCTTTGACG
Found at i:6460300 original size:20 final size:21
Alignment explanation
Indices: 6460270--6460314 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 21
6460260 CCCTTATAAA
6460270 ATTTCCTTAACTTATTATTAT
1 ATTTCCTTAACTTATTATTAT
6460291 ATTT-CTTAACTTATTATTAT
1 ATTTCCTTAACTTATTATTAT
6460311 ATTT
1 ATTT
6460315 TTATCAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTCCTTAACTTATTATTAT
Found at i:6464444 original size:81 final size:81
Alignment explanation
Indices: 6464173--6464776 Score: 719
Period size: 81 Copynumber: 7.5 Consensus size: 81
6464163 TTGTGGCATT
* * * * * * * * * *
6464173 CTTTCTGCCAAAAAGCACAGTTAGGTATTTAGTCTTTCATCCCAAATGTATTTAGCGTTTCATCT
1 CTTTCTGTC-AAATGCACAGCTAGGCATTTAATCTTTTA-CTCAAAGGTATTTAACCTTTCATCT
** * *
6464238 AACTTGCATGAATAACAC
64 AACAGGCATGATTGACAC
* * *
6464256 CTTTTTGTCAAATGCACATCTAGGCATTTAATCTTTCACTCAAAGGTATTTAACCTTTCATCT--
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
6464319 -AGGCATGATTGACAC
66 CAGGCATGATTGACAC
* * * *
6464334 CTTTCTGTTAAATGCACAGCTAGGTATTTAATCTTTTACTCAAAGGTCTTTAACCTTTCATCTAG
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
6464399 CAGGCATGATTGACAC
66 CAGGCATGATTGACAC
* * * *
6464415 CTTTCTGTCAAATGCACTGCTAGGCATTTAATTTTTTATTCAAAGATATTTAACCTTTCATCTAA
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
* *
6464480 CTGGCATGATTGACAT
66 CAGGCATGATTGACAC
* * * * *
6464496 ATTTCTATGAAATGCATAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAT
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
* * *
6464561 CTGGTATGATTGGCAC
66 CAGGCATGATTGACAC
* * *
6464577 ATTTCTGTCAAATGCACAACTAGGCATTTAATCTTTTACTCAAATGTATTTAACCTTTCATCTAA
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
* *
6464642 CTGGCATGATTAACAC
66 CAGGCATGATTGACAC
* * * *
6464658 CTTTTTGTCAAATTCACAACTAGGCATTTAATTTTTTACTCAAAGGTATTTAACCTTTCATCTAA
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
**
6464723 CATACATGATTGACAC
66 CAGGCATGATTGACAC
* * * *
6464739 ATTTCTGTCAAATACACAGTTAGCCATTTAATCTTTTA
1 CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTA
6464777 TTTTAAAATA
Statistics
Matches: 450, Mismatches: 68, Indels: 8
0.86 0.13 0.02
Matches are distributed among these distances:
78 68 0.15
81 351 0.78
82 24 0.05
83 7 0.02
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (81 bp):
CTTTCTGTCAAATGCACAGCTAGGCATTTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA
CAGGCATGATTGACAC
Found at i:6467316 original size:11 final size:11
Alignment explanation
Indices: 6467247--6467326 Score: 53
Period size: 11 Copynumber: 7.3 Consensus size: 11
6467237 AAACCTAATT
6467247 TAAAAATAAAA
1 TAAAAATAAAA
6467258 TAACAAAT--AA
1 TAA-AAATAAAA
6467268 T-AAAATAATAA
1 TAAAAATAA-AA
6467279 -AAAAAGTAAAA
1 TAAAAA-TAAAA
* *
6467290 -ACCAACATAGAA
1 TA--AAAATAAAA
6467302 TAAAAATAAAA
1 TAAAAATAAAA
*
6467313 TAAACATAAAA
1 TAAAAATAAAA
6467324 TAA
1 TAA
6467327 GGACCTAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
8 4 0.07
9 1 0.02
10 3 0.05
11 32 0.58
12 11 0.20
13 4 0.07
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:6468281 original size:18 final size:18
Alignment explanation
Indices: 6468244--6468281 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6468234 CTGAGTCAAG
*
6468244 TTTAGGGTTTGGTTGGGT
1 TTTAGGGTTTGGTTGAGT
6468262 TTTAGGGTTTAGGTT-AGT
1 TTTAGGGTTT-GGTTGAGT
6468280 TT
1 TT
6468282 AGGTTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.11, C:0.00, G:0.37, T:0.53
Consensus pattern (18 bp):
TTTAGGGTTTGGTTGAGT
Found at i:6468282 original size:17 final size:18
Alignment explanation
Indices: 6468242--6468289 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
6468232 GCCTGAGTCA
6468242 AGTTTAGGGTTT-GGTTG
1 AGTTTAGGGTTTAGGTTG
*
6468259 GGTTTTAGGGTTTAGGTT-
1 AG-TTTAGGGTTTAGGTTG
*
6468277 AGTTTAGGTTTTA
1 AGTTTAGGGTTTA
6468290 ATTGGTTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 11 0.42
18 11 0.42
19 4 0.15
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (18 bp):
AGTTTAGGGTTTAGGTTG
Found at i:6469082 original size:136 final size:136
Alignment explanation
Indices: 6468497--6469162 Score: 754
Period size: 136 Copynumber: 4.9 Consensus size: 136
6468487 CTTTCTACTA
* * * * *
6468497 GAAATGTCGATCCCTCAAGTGAGGCATCGCTGATTCGAAGTGTTGTGAATCTAGCAATAGGTCGA
1 GAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAATAGGTCGA
* * * * *
6468562 ACAAGTTCTTCTTATTATGAACTTCTTC-ACATTCTTTCAGATGAGTTCTTCTCATTATGAACTC
66 ACAAGTTCTTCTCATTATGAACTTCTTCTCCCTT-TATCGGATGAGTTCTTCTCATTATGAACTC
6468626 TCCATCG
130 TCCATCG
* * * * * * * * *
6468633 GAAATGTCAATTCCTTAAGCGAGACGTTGTTGATTTGAAGTATTGTGAATCGAGCAATATGTCAA
1 GAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAATAGGTCGA
* ** * ** *
6468698 ACAAGTTC-T-T-ATTATGAACTTTTTCTCTTTTTGTCGGATGAGTTCTGATTATTATGAACTCT
66 ACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAACTCT
*
6468760 CCATCA
131 CCATCG
* * * * *
6468766 GAAACGTCAATCCCTCTAGCGAGGCATTTCTGATTCGATGTGTTGTGAATCGAATG--ATAGGTC
1 GAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGTTGTGAATC-AA-GCAATAGGTC
* * * * * *
6468829 TAACAA-ATCTTTCTCATTATGAACTTCTTTTCTCTCTGTCGGATGAGTT-TTCTCATTATGAAC
64 GAACAAGTTC-TTCTCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAAC
* *
6468892 TCTCTATTG
128 TCTCCATCG
* * *
6468901 GAAATGTTAATCCCTTAAGTGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAATAGGTCGA
1 GAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAATAGGTCGA
* *
6468966 ACAAGTTCTTATCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAACACT
66 ACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAACTCT
*
6469031 CCATTG
131 CCATCG
* * * *
6469037 GAAATGGCAATCCCTCAAGCGAGGCGTTGCTAATTCAAAGTGTTGTGAATCGAGCAATAGGTCGA
1 GAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAATAGGTCGA
* * * *
6469102 ACAAGTTATTCTCATTATGAACTTCTTCTCCCTCTATCGGATGAGTTATTCTCATTTTGAA
66 ACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAA
6469163 ATTTTCATTG
Statistics
Matches: 442, Mismatches: 77, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
132 2 0.00
133 97 0.22
134 7 0.02
135 109 0.25
136 227 0.51
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (136 bp):
GAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAATAGGTCGA
ACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAACTCT
CCATCG
Found at i:6469087 original size:271 final size:269
Alignment explanation
Indices: 6468496--6469162 Score: 827
Period size: 271 Copynumber: 2.5 Consensus size: 269
6468486 TCTTTCTACT
* * * *
6468496 AGAAATGTCGATCCCTCAAGTGAGGCATCGCTGATTCGAAGTGTTGTGAATCTAGCAATAGGTCG
1 AGAAATGTCAATCCCTCAAGCGAGGCATTGCTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCG
* * * * * *
6468561 AACAAGTTCTTCTTATTATGAACTTCTTCACAT-TCTTTCAGATGAGTTCTTCTCATTATGAACT
66 AACAAGTTATTCTCATTATGAACTTCTTCTC-TCTCTATCGGATGAGTTATTCTCATTATGAACT
* * * *
6468625 CTCCATCGGAAATGTCAATTCCTTAAGCGAGACGTTGTTGATTTGAAGTATTGTGAATCGAGCAA
130 CTCCATCGGAAATGTCAATCCCTTAAGCGAGACGTTGCTGATTCGAAGTATTGTGAATCAAGCAA
* * ** * *
6468690 TATGTCAAACAAGTTCTTATTATGAACTTTTTCTCTTTTTGTCGGATGAGTTCTGATTATTATGA
195 TAGGTCAAACAAGTTCTTATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTGATCATTATGA
*
6468755 ACTCTCCATC
260 ACACTCCATC
* * * * *** *
6468765 AGAAACGTCAATCCCTCTAGCGAGGCATTTCTGATTCGATGTGTTGTGAATCGAATGATAGGTCT
1 AGAAATGTCAATCCCTCAAGCGAGGCATTGCTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCG
* * *
6468830 AACAAATCT-TTCTCATTATGAACTTCTTTTCTCTCTGTCGGATGAGTT-TTCTCATTATGAACT
66 AACAAGT-TATTCTCATTATGAACTTCTTCTCTCTCTATCGGATGAGTTATTCTCATTATGAACT
* * * * * *
6468893 CTCTATTGGAAATGTTAATCCCTTAAGTGAGGCGTTGCTGATTCGAAGTGTTGTGAATCAAGCAA
130 CTCCATCGGAAATGTCAATCCCTTAAGCGAGACGTTGCTGATTCGAAGTATTGTGAATCAAGCAA
* **
6468958 TAGGTCGAACAAGTTCTTATCATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTA
195 TAGGTCAAACAAGTTC-T-T-ATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTGATCATTA
*
6469023 TGAACACTCCATT
257 TGAACACTCCATC
* * * * *
6469036 GGAAATGGCAATCCCTCAAGCGAGGCGTTGCTAATTCAAAGTGTTGTGAATCGAGCAATAGGTCG
1 AGAAATGTCAATCCCTCAAGCGAGGCATTGCTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCG
* *
6469101 AACAAGTTATTCTCATTATGAACTTCTTCTCCCTCTATCGGATGAGTTATTCTCATTTTGAA
66 AACAAGTTATTCTCATTATGAACTTCTTCTCTCTCTATCGGATGAGTTATTCTCATTATGAA
6469163 ATTTTCATTG
Statistics
Matches: 334, Mismatches: 57, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
268 85 0.25
269 92 0.28
270 3 0.01
271 142 0.43
272 12 0.04
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (269 bp):
AGAAATGTCAATCCCTCAAGCGAGGCATTGCTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCG
AACAAGTTATTCTCATTATGAACTTCTTCTCTCTCTATCGGATGAGTTATTCTCATTATGAACTC
TCCATCGGAAATGTCAATCCCTTAAGCGAGACGTTGCTGATTCGAAGTATTGTGAATCAAGCAAT
AGGTCAAACAAGTTCTTATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTGATCATTATGAA
CACTCCATC
Found at i:6470129 original size:10 final size:10
Alignment explanation
Indices: 6470114--6470159 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
6470104 TCTCTTATTC
6470114 TTTTCTTTTT
1 TTTTCTTTTT
*
6470124 TTTTCTTCTT
1 TTTTCTTTTT
*
6470134 TTTTCTTTTC
1 TTTTCTTTTT
6470144 TTTT-TTTTT
1 TTTTCTTTTT
*
6470153 ATTTCTT
1 TTTTCTT
6470160 AGGCATAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 7 0.23
10 23 0.77
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:6470137 original size:12 final size:11
Alignment explanation
Indices: 6470114--6470152 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 11
6470104 TCTCTTATTC
6470114 TTTTCTTTTTTT
1 TTTTC-TTTTTT
6470126 TTCTTCTTTTTT
1 TT-TTCTTTTTT
6470138 CTTTTCTTTTTT
1 -TTTTCTTTTTT
6470150 TTT
1 TTT
6470153 ATTTCTTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.12
12 17 0.68
13 5 0.20
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:6470137 original size:15 final size:14
Alignment explanation
Indices: 6470111--6470159 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 14
6470101 CTCTCTCTTA
6470111 TTCTTTTCTTTTTTT
1 TTCTTTT-TTTTTTT
*
6470126 TTCTTCTTTTTTCTT
1 TTCTT-TTTTTTTTT
*
6470141 TTCTTTTTTTTTAT
1 TTCTTTTTTTTTTT
6470155 TTCTT
1 TTCTT
6470160 AGGCATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.40
15 16 0.53
16 2 0.07
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (14 bp):
TTCTTTTTTTTTTT
Found at i:6473652 original size:7 final size:7
Alignment explanation
Indices: 6473640--6473669 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
6473630 TATTGGAATG
6473640 TAAAGAA
1 TAAAGAA
6473647 TAAAGAA
1 TAAAGAA
*
6473654 TATAGAA
1 TAAAGAA
6473661 TAAAGAA
1 TAAAGAA
6473668 TA
1 TA
6473670 TGATACAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (7 bp):
TAAAGAA
Found at i:6480722 original size:18 final size:18
Alignment explanation
Indices: 6480701--6480757 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
6480691 TTTAAAAAAT
6480701 AAAATAACAAATAATAAA
1 AAAATAACAAATAATAAA
* *
6480719 AAAATAAAAAACT-GTAAAA
1 AAAATAACAAA-TAAT-AAA
* *
6480738 AAAACAACATATAATAAA
1 AAAATAACAAATAATAAA
6480756 AA
1 AA
6480758 TAAAAGCAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 17 0.57
19 13 0.43
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.16
Consensus pattern (18 bp):
AAAATAACAAATAATAAA
Found at i:6480836 original size:21 final size:22
Alignment explanation
Indices: 6480811--6480851 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
6480801 ATTGATAGAC
*
6480811 TAAAAGGGGA-TAAATTAAACA
1 TAAAAGAGGACTAAATTAAACA
*
6480832 TAAAATAGGACTAAATTAAA
1 TAAAAGAGGACTAAATTAAA
6480852 ACAAATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.22
Consensus pattern (22 bp):
TAAAAGAGGACTAAATTAAACA
Found at i:6482291 original size:16 final size:16
Alignment explanation
Indices: 6482266--6482305 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
6482256 TGGATTTTGG
*
6482266 GGTTTAGGTTTTAATT
1 GGTTTGGGTTTTAATT
6482282 GGTTTGGGTTTTAATT
1 GGTTTGGGTTTTAATT
*
6482298 TGTTTGGG
1 GGTTTGGG
6482306 CTTTGGGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.12, C:0.00, G:0.33, T:0.55
Consensus pattern (16 bp):
GGTTTGGGTTTTAATT
Found at i:6482930 original size:22 final size:22
Alignment explanation
Indices: 6482904--6482963 Score: 54
Period size: 22 Copynumber: 2.7 Consensus size: 22
6482894 ACTATGCGAT
6482904 ATGTATATATATTATT-TATAC
1 ATGTATATATATTATTATATAC
*
6482925 ATTGTAGTGATATA--ATTATATTC
1 A-TGTA-T-ATATATTATTATATAC
6482948 ATGTATATATAATTAT
1 ATGTATATAT-ATTAT
6482964 ACCTTATAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
20 4 0.13
21 3 0.10
22 11 0.35
23 8 0.26
24 5 0.16
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.50
Consensus pattern (22 bp):
ATGTATATATATTATTATATAC
Found at i:6483221 original size:3 final size:3
Alignment explanation
Indices: 6483213--6483244 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
6483203 TCGTTCATTA
6483213 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
6483245 CCATTAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:6485173 original size:10 final size:10
Alignment explanation
Indices: 6485132--6485172 Score: 64
Period size: 10 Copynumber: 4.1 Consensus size: 10
6485122 AAATGAACTC
6485132 ACATAAATGA
1 ACATAAATGA
*
6485142 ACATAAACGA
1 ACATAAATGA
6485152 ACATAAATGA
1 ACATAAATGA
*
6485162 ATATAAATGA
1 ACATAAATGA
6485172 A
1 A
6485173 TGAACATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.20
Consensus pattern (10 bp):
ACATAAATGA
Found at i:6487068 original size:19 final size:18
Alignment explanation
Indices: 6487044--6487079 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6487034 AACAATTTAA
6487044 GAATCTATAGAAAATGGTG
1 GAATCTAT-GAAAATGGTG
*
6487063 GAATCTGTGAAAATGGT
1 GAATCTATGAAAATGGT
6487080 TAAACCCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (18 bp):
GAATCTATGAAAATGGTG
Found at i:6489040 original size:27 final size:27
Alignment explanation
Indices: 6488999--6489071 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
6488989 TTTCAAGAAA
*
6488999 ATGAAGATGATCCAGAGATTGTAGAGT
1 ATGAAGATGATCCAGAGATTGTACAGT
*
6489026 ATTAAGATGATCCAGAGATTGTACAGT
1 ATGAAGATGATCCAGAGATTGTACAGT
6489053 ATGAAGATGATCCAGAGAT
1 ATGAAGATGATCCAGAGAT
6489072 CATCGCATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (27 bp):
ATGAAGATGATCCAGAGATTGTACAGT
Found at i:6494550 original size:131 final size:129
Alignment explanation
Indices: 6494334--6494615 Score: 368
Period size: 131 Copynumber: 2.2 Consensus size: 129
6494324 GAAAATAATA
* * * * *
6494334 ATATCTTTTTATTTCGATTGGAGTAATAAATGATATCTTAAAGGCATGAGAGGTTATTTATTCTC
1 ATATCTCTTCATTTCGATTGGACTAATAAATGATATCTTAAAGGCATGAGAGATAATTTATTCTC
* * ** * *
6494399 GATTGGAAATCATTATATATTATGGTTTTCTTTTGAATCAATATTGAATTTTAAGACGAAATAAC
66 GATTGGAAATAATTAGATATTACCGTTTTCTCTCG-A-CAATATTGAATTTTAAGACGAAATAAC
6494464 G
129 G
*
6494465 ATATCTCTTCATTTCGATTGGACTAATAAATGACTA-CTTGAAGGCATGAGAGATAATTTATTCT
1 ATATCTCTTCATTTCGATTGGACTAATAAATGA-TATCTTAAAGGCATGAGAGATAATTTATTCT
* * * **
6494529 CGATTGGAAATAATTAGATATTACCGTTTTCTCTCGACAATATTTATTTTTAAGACGGAATAGTG
65 CGATTGGAAATAATTAGATATTACCGTTTTCTCTCGACAATATTGAATTTTAAGACGAAATAACG
*
6494594 ATATCTCTTCATTTTGATTGGA
1 ATATCTCTTCATTTCGATTGGA
6494616 GGGATGAGAT
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
129 44 0.33
130 1 0.01
131 85 0.64
132 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (129 bp):
ATATCTCTTCATTTCGATTGGACTAATAAATGATATCTTAAAGGCATGAGAGATAATTTATTCTC
GATTGGAAATAATTAGATATTACCGTTTTCTCTCGACAATATTGAATTTTAAGACGAAATAACG
Found at i:6506859 original size:135 final size:135
Alignment explanation
Indices: 6506505--6506860 Score: 464
Period size: 135 Copynumber: 2.6 Consensus size: 135
6506495 ATCTAACTTT
* * * *
6506505 ATTCAATATTCCCTGAAGAACGGTGGAATGAATC-ATCG-TCCCAGATCTGATTTTCCCTAAAGA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAAT-GTTTCCAGATCTGATTTTCCCTGAAGA
* * * *
6506568 AACAGCGGAACAAATCCCATCTCTTTCCAGATTTGATCTTCCCTGAGTAGCAGTGGAACAAGTCT
65 AACAGTGGAACAAATCCCTTTTCTTTCCAGATTTGATATTCCCTGAGTAGCAGTGGAACAAGTCT
*
6506633 ACCTCG
130 ACCTCA
* * * * *
6506639 ATTCAATCTTCTCTGAAGAACAGTGGAATGAATCAACGTCTCTAGATCTGATTTTTCCTGAAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTTTCCAGATCTGATTTTCCCTGAAGAA
* * * * * *
6506704 GCAGTAGAACAGACCCCTTTTCTTTCCAGATTTGATATTCCCTGAGTAGTAGTGGAACAAGTCTG
66 ACAGTGGAACAAATCCCTTTTCTTTCCAGATTTGATATTCCCTGAGTAGCAGTGGAACAAGTCTA
6506769 CCTCA
131 CCTCA
* * *
6506774 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTTTCCATATCTGATATACCCTGAAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTTTCCAGATCTGATTTTCCCTGAAGAA
* *
6506839 ACAGTGGAGCAAATCTCTTTTC
66 ACAGTGGAACAAATCCCTTTTC
6506861 AGACTCCATC
Statistics
Matches: 186, Mismatches: 34, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
134 32 0.17
135 154 0.83
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (135 bp):
ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTTTCCAGATCTGATTTTCCCTGAAGAA
ACAGTGGAACAAATCCCTTTTCTTTCCAGATTTGATATTCCCTGAGTAGCAGTGGAACAAGTCTA
CCTCA
Found at i:6507050 original size:3 final size:3
Alignment explanation
Indices: 6507042--6507078 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
6507032 TTTATCCCGA
6507042 TAT TAT TAT TAT TAT TA- TAT T-T TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6507079 TATGCAGGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 6 0.19
3 25 0.81
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:6507068 original size:16 final size:16
Alignment explanation
Indices: 6507041--6507079 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
6507031 TTTTATCCCG
6507041 ATATTATTATTATTATT
1 ATATT-TTATTATTATT
6507058 ATATTTTATTATTATT
1 ATATTTTATTATTATT
*
6507074 TTATTT
1 ATATTT
6507080 ATGCAGGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
ATATTTTATTATTATT
Found at i:6509450 original size:131 final size:130
Alignment explanation
Indices: 6509096--6509450 Score: 428
Period size: 131 Copynumber: 2.7 Consensus size: 130
6509086 AAATAGCAAT
* * * *
6509096 ATCTTTTCATTTCGATTTGAGTAATAAATGATTGCTTAAAGGCATGAGAGGTCATTTATTCTCGA
1 ATCTCTTCATTTCGA-TTGAGTAATAAATGATTGCTTTAAGGCATGAGTGGTCATTTATTATCGA
** * * ** *
6509161 TTGGAAATAATTAGATATTATGGTTTTATTTTGAATCAATATTGAATTTTAAGATGAAATAGTGA
65 TTGGAAATAATTAGATATTATCATTTTCTCTCAAATCAATATTGAATTTTAAGAAGAAATAGTGA
*
6509226 T
130 C
* *
6509227 ATTTCTTCATTTCGATTGAAGTAATAAACGACTT-CTTTAAGGCATGA-TAGGTCATTTATTATC
1 ATCTCTTCATTTCGATTG-AGTAATAAATGA-TTGCTTTAAGGCATGAGT-GGTCATTTATTATC
* * * * *
6509290 GATTGAAAATAATTTGATATTACCATTTTCTCTCAAATCAATATTTATTTTTAAGACAG-AATAG
63 GATTGGAAATAATTAGATATTATCATTTTCTCTCAAATCAATATTGAATTTTAAGA-AGAAATAG
6509354 TGAC
127 TGAC
* * *
6509358 ATCTCTTCATTTTGATTAGAGTAATAAATGATTGCTTTAAGGCATGAGTGGTCATTTATTTTCAA
1 ATCTCTTCATTTCGATT-GAGTAATAAATGATTGCTTTAAGGCATGAGTGGTCATTTATTATCGA
*
6509423 TTGGAAATAGTTAGATATTATCATTTTC
65 TTGGAAATAATTAGATATTATCATTTTC
6509451 GTTCTTAAAA
Statistics
Matches: 189, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
130 5 0.03
131 179 0.95
132 5 0.03
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (130 bp):
ATCTCTTCATTTCGATTGAGTAATAAATGATTGCTTTAAGGCATGAGTGGTCATTTATTATCGAT
TGGAAATAATTAGATATTATCATTTTCTCTCAAATCAATATTGAATTTTAAGAAGAAATAGTGAC
Found at i:6512186 original size:17 final size:17
Alignment explanation
Indices: 6512164--6512196 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6512154 CAAATTTTGC
6512164 TTATTTTCTAT-ATTAAT
1 TTATTTT-TATAATTAAT
6512181 TTATTTTTATAATTAA
1 TTATTTTTATAATTAA
6512197 AAATTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTTTTATAATTAAT
Found at i:6514908 original size:13 final size:13
Alignment explanation
Indices: 6514889--6514951 Score: 72
Period size: 13 Copynumber: 4.5 Consensus size: 13
6514879 GTCACAACCC
6514889 GACCCGACCCGTT
1 GACCCGACCCGTT
*
6514902 TACCCGACCCGTT
1 GACCCGACCCGTT
6514915 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
6514933 GACCCGACCCGTT
1 GACCCGACCCGTT
6514946 GACCCG
1 GACCCG
6514952 TTGACCGTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
13 31 0.72
18 12 0.28
ACGTcount: A:0.16, C:0.48, G:0.22, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:6514908 original size:18 final size:18
Alignment explanation
Indices: 6514903--6514957 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
6514893 CGACCCGTTT
6514903 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
6514921 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
6514939 ACCCGTTGACCCGTTGACC
1 ACCC---GACCCGTTGACC
6514958 GTTGACCGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 22 0.65
21 12 0.35
ACGTcount: A:0.16, C:0.47, G:0.22, T:0.15
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:6514923 original size:31 final size:31
Alignment explanation
Indices: 6514885--6514951 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
6514875 ACCGGTCACA
*
6514885 ACCCGACCCGACCCGTTTACCCGACCCGTTG
1 ACCCGACCCGACCCGTTGACCCGACCCGTTG
6514916 ACCCGACCCGACCCGTTGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTGACCCGACCCGTTG
6514947 ACCCG
1 ACCCG
6514952 TTGACCGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.16, C:0.49, G:0.21, T:0.13
Consensus pattern (31 bp):
ACCCGACCCGACCCGTTGACCCGACCCGTTG
Found at i:6514936 original size:8 final size:8
Alignment explanation
Indices: 6514925--6514964 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
6514915 GACCCGACCC
6514925 GACCCGTT
1 GACCCGTT
6514933 GACCC---
1 GACCCGTT
6514938 GACCCGTT
1 GACCCGTT
6514946 GACCCGTT
1 GACCCGTT
6514954 GA-CCGTT
1 GACCCGTT
6514961 GACC
1 GACC
6514965 GGAGTTGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
5 5 0.18
7 7 0.25
8 16 0.57
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (8 bp):
GACCCGTT
Found at i:6516660 original size:13 final size:13
Alignment explanation
Indices: 6516641--6516703 Score: 72
Period size: 13 Copynumber: 4.5 Consensus size: 13
6516631 GTCACAACCC
6516641 GACCCGACCCGTT
1 GACCCGACCCGTT
*
6516654 TACCCGACCCGTT
1 GACCCGACCCGTT
6516667 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
6516685 GACCCGACCCGTT
1 GACCCGACCCGTT
6516698 GACCCG
1 GACCCG
6516704 TTGACCGTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
13 31 0.72
18 12 0.28
ACGTcount: A:0.16, C:0.48, G:0.22, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:6516660 original size:18 final size:18
Alignment explanation
Indices: 6516655--6516709 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
6516645 CGACCCGTTT
6516655 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
6516673 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
6516691 ACCCGTTGACCCGTTGACC
1 ACCC---GACCCGTTGACC
6516710 GTTGACCGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 22 0.65
21 12 0.35
ACGTcount: A:0.16, C:0.47, G:0.22, T:0.15
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:6516675 original size:31 final size:31
Alignment explanation
Indices: 6516637--6516703 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
6516627 ACCGGTCACA
*
6516637 ACCCGACCCGACCCGTTTACCCGACCCGTTG
1 ACCCGACCCGACCCGTTGACCCGACCCGTTG
6516668 ACCCGACCCGACCCGTTGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTGACCCGACCCGTTG
6516699 ACCCG
1 ACCCG
6516704 TTGACCGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.16, C:0.49, G:0.21, T:0.13
Consensus pattern (31 bp):
ACCCGACCCGACCCGTTGACCCGACCCGTTG
Found at i:6516688 original size:8 final size:8
Alignment explanation
Indices: 6516677--6516716 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
6516667 GACCCGACCC
6516677 GACCCGTT
1 GACCCGTT
6516685 GACCC---
1 GACCCGTT
6516690 GACCCGTT
1 GACCCGTT
6516698 GACCCGTT
1 GACCCGTT
6516706 GA-CCGTT
1 GACCCGTT
6516713 GACC
1 GACC
6516717 GGAGTTGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
5 5 0.18
7 7 0.25
8 16 0.57
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (8 bp):
GACCCGTT
Found at i:6517148 original size:3 final size:3
Alignment explanation
Indices: 6517140--6517231 Score: 94
Period size: 3 Copynumber: 30.0 Consensus size: 3
6517130 TTCATTTTAT
* * **
6517140 TTA TTA TTA TTA TTA TTA TTAA ATA TTA GTA TTA TTA TTA TTA AAA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
** * *
6517186 TTA AAA TTA TTA TCA ATA TTA TATA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
6517232 AAATAAATAA
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
3 66 0.93
4 5 0.07
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:6519032 original size:157 final size:148
Alignment explanation
Indices: 6518680--6519072 Score: 434
Period size: 157 Copynumber: 2.6 Consensus size: 148
6518670 TGTAAATCAA
* * ** *
6518680 TAATATTTATTTATTTTTAAATATTAAGAAACGGCAT-TCTTAAAATAACTAGATGTCCTATTCT
1 TAATATTTATTTATTTTTAAATATTAAGAAATGGGATGTCTTAAAGCAACTAGAAGTCCTATTCT
* *
6518744 GATA-TTTTAAAAATAATAAATATCATGCTTATAAAAATATATATTTACCTTAATGTTATAATTT
66 GATATTTTTAAATA-AATAAATATCATACTTATAAAAATATATATTTACCTTAATGTTATAATTT
*
6518808 TATTACAAATTGTCATATTAT
130 TATTACAAAATGTC--ATTAT
* * *
6518829 TAATATTTATTTATTTTTCAATATTAAGAAATGAGATGTCTTAAAGCAACTAGAAGTCCTTTTCT
1 TAATATTTATTTATTTTTAAATATTAAGAAATGGGATGTCTTAAAGCAACTAGAAGTCCTATTCT
* ** * * *
6518894 GATATTTTTAAATAAATAAATATCCTACTTTTATAAATTAGATATATTAATTTATTTTATTTTTT
66 GATATTTTTAAATAAATAAATATCATAC--TTATAAA--A-ATATA-T-ATTTACCTTAATGTTA
* *
6518959 TAATTATTTTTAGAGAAATGTC-TTAT
124 TAATT-TTATTACA-AAATGTCATTAT
* *
6518985 TAATATTTATTTATTTATT-AATATTAAAGAAATGGGATGTCTTAAAGCAACTATAAATCCTATT
1 TAATATTTATTTATTT-TTAAATATT-AAGAAATGGGATGTCTTAAAGCAACTAGAAGTCCTATT
*
6519049 CTGATATTTGTAAATAAATAAATA
64 CTGATATTTTTAAATAAATAAATA
6519073 CCTTATTTAT
Statistics
Matches: 207, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
149 33 0.16
150 39 0.19
151 8 0.04
152 7 0.03
154 1 0.00
155 5 0.02
156 27 0.13
157 75 0.36
158 6 0.03
159 6 0.03
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (148 bp):
TAATATTTATTTATTTTTAAATATTAAGAAATGGGATGTCTTAAAGCAACTAGAAGTCCTATTCT
GATATTTTTAAATAAATAAATATCATACTTATAAAAATATATATTTACCTTAATGTTATAATTTT
ATTACAAAATGTCATTAT
Found at i:6519447 original size:28 final size:28
Alignment explanation
Indices: 6519416--6519472 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
6519406 AAAATATTTC
6519416 TTTAAAAAGATCATTTATTTATTCACCT
1 TTTAAAAAGATCATTTATTTATTCACCT
*
6519444 TTTAAAAATATCATTTATTTATTCACCT
1 TTTAAAAAGATCATTTATTTATTCACCT
6519472 T
1 T
6519473 ATTTTTCTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (28 bp):
TTTAAAAAGATCATTTATTTATTCACCT
Found at i:6520560 original size:36 final size:36
Alignment explanation
Indices: 6520513--6520584 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
6520503 GAGATATGCA
* *
6520513 CACAAAGATCCTGATATATTAATACCAAAAGTATTC
1 CACAAAGATCCTGATAGATTAATACCAAAAGCATTC
* *
6520549 CACAAAGATCCTGTTAGATTGATACCAAAAGCATTC
1 CACAAAGATCCTGATAGATTAATACCAAAAGCATTC
6520585 TATGGTAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (36 bp):
CACAAAGATCCTGATAGATTAATACCAAAAGCATTC
Found at i:6528053 original size:22 final size:22
Alignment explanation
Indices: 6528028--6528073 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
6528018 TTTAATTTCT
6528028 ATTTGGGTGCTATTTGAGTAAA
1 ATTTGGGTGCTATTTGAGTAAA
* *
6528050 ATTTGGGTGTTATTTGTGTAAA
1 ATTTGGGTGCTATTTGAGTAAA
6528072 AT
1 AT
6528074 GGTCGACTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.46
Consensus pattern (22 bp):
ATTTGGGTGCTATTTGAGTAAA
Found at i:6532183 original size:19 final size:19
Alignment explanation
Indices: 6532159--6532206 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
6532149 CATTTTATGT
6532159 ATCGATGCACATACCATGC
1 ATCGATGCACATACCATGC
6532178 ATCGATGCACATACCATGC
1 ATCGATGCACATACCATGC
6532197 ATCGATGCAC
1 ATCGATGCAC
6532207 TCCTGGCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (19 bp):
ATCGATGCACATACCATGC
Found at i:6532373 original size:22 final size:22
Alignment explanation
Indices: 6532345--6532388 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6532335 GCACTGATGC
6532345 ACTTACGCTCCCAACCAGATTT
1 ACTTACGCTCCCAACCAGATTT
*
6532367 ACTTACGCTCCCAACTAGATTT
1 ACTTACGCTCCCAACCAGATTT
6532389 TTAAATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.34, G:0.09, T:0.30
Consensus pattern (22 bp):
ACTTACGCTCCCAACCAGATTT
Found at i:6534857 original size:12 final size:12
Alignment explanation
Indices: 6534840--6534866 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6534830 ATCTTTGTAA
6534840 TAATGTGGTTTT
1 TAATGTGGTTTT
6534852 TAATGTGGTTTT
1 TAATGTGGTTTT
6534864 TAA
1 TAA
6534867 AAATATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (12 bp):
TAATGTGGTTTT
Found at i:6535485 original size:12 final size:13
Alignment explanation
Indices: 6535457--6535485 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6535447 TTTGGTAATC
6535457 CCCGCCCCGATTA
1 CCCGCCCCGATTA
6535470 CCCGCCCCGA-TA
1 CCCGCCCCGATTA
6535482 CCCG
1 CCCG
6535486 AACCGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.14, C:0.59, G:0.17, T:0.10
Consensus pattern (13 bp):
CCCGCCCCGATTA
Found at i:6535544 original size:30 final size:30
Alignment explanation
Indices: 6535494--6535582 Score: 71
Period size: 30 Copynumber: 3.0 Consensus size: 30
6535484 CGAACCGATA
6535494 AATATTAA-AAATAATT-ATTTATATATATAT
1 AATATTAATAAAT--TTAATTTATATATATAT
* *
6535524 AATATTAATAAATTTAATTTA-A-ATAAAA
1 AATATTAATAAATTTAATTTATATATATAT
* * *
6535552 AATATATATTTAATTTAA-ATATATATATAT
1 AATAT-TAATAAATTTAATTTATATATATAT
6535582 A
1 A
6535583 CCCGGCCCGA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
28 11 0.23
29 14 0.30
30 18 0.38
31 4 0.09
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
AATATTAATAAATTTAATTTATATATATAT
Found at i:6535549 original size:24 final size:26
Alignment explanation
Indices: 6535522--6535582 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
6535512 TTATATATAT
*
6535522 ATAATATTAATA-A-ATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
6535546 ATAA-A-AAATATATATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
*
6535570 AT-ATATATATATA
1 ATAATATAAATATA
6535583 CCCGGCCCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 18 0.58
25 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATAATATAAATATATATTTAATTTAA
Found at i:6535564 original size:19 final size:19
Alignment explanation
Indices: 6535540--6535579 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6535530 AATAAATTTA
6535540 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
6535559 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
6535578 AT
1 AT
6535580 ATACCCGGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:6535624 original size:12 final size:12
Alignment explanation
Indices: 6535600--6535645 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
6535590 CGATTCCCAG
6535600 CCCAATA-CCGA
1 CCCAATACCCGA
6535611 CCCAATACCCGA
1 CCCAATACCCGA
* *
6535623 CCCAATACCTGG
1 CCCAATACCCGA
6535635 CCCAATACCCG
1 CCCAATACCCG
6535646 TTTAAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
11 7 0.23
12 24 0.77
ACGTcount: A:0.30, C:0.48, G:0.11, T:0.11
Consensus pattern (12 bp):
CCCAATACCCGA
Found at i:6535627 original size:23 final size:24
Alignment explanation
Indices: 6535600--6535645 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
6535590 CGATTCCCAG
6535600 CCCAATACC-GACCCAATACCCGA
1 CCCAATACCTGACCCAATACCCGA
*
6535623 CCCAATACCTGGCCCAATACCCG
1 CCCAATACCTGACCCAATACCCG
6535646 TTTAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.30, C:0.48, G:0.11, T:0.11
Consensus pattern (24 bp):
CCCAATACCTGACCCAATACCCGA
Found at i:6546990 original size:12 final size:12
Alignment explanation
Indices: 6546975--6547018 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
6546965 GAGGCTGTAG
6546975 TGGAGGAGAACT
1 TGGAGGAGAACT
* *
6546987 TGGAGGAGGTA-G
1 TGGAGGA-GAACT
6546999 TGGAGGAGAACT
1 TGGAGGAGAACT
6547011 TGGAGGAG
1 TGGAGGAG
6547019 GTGGTGGAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.30, C:0.05, G:0.50, T:0.16
Consensus pattern (12 bp):
TGGAGGAGAACT
Found at i:6546998 original size:24 final size:24
Alignment explanation
Indices: 6546971--6547028 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
6546961 GGAGGAGGCT
6546971 GTAGTGGAGGAGAACTTGGAGGAG
1 GTAGTGGAGGAGAACTTGGAGGAG
6546995 GTAGTGGAGGAGAACTTGGAGGAG
1 GTAGTGGAGGAGAACTTGGAGGAG
*
6547019 GTGGTGGAGG
1 GTAGTGGAGG
6547029 GATTGAAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.26, C:0.03, G:0.53, T:0.17
Consensus pattern (24 bp):
GTAGTGGAGGAGAACTTGGAGGAG
Found at i:6548355 original size:25 final size:24
Alignment explanation
Indices: 6548322--6548374 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
6548312 TTTTTTTCCG
6548322 AAAATATATATAATATATAG-TCTT
1 AAAATATATATAATATATAGCT-TT
6548346 AAAACTATATATAATATATAGCTTT
1 AAAA-TATATATAATATATAGCTTT
6548371 AAAA
1 AAAA
6548375 ACATTTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 4 0.15
25 22 0.81
26 1 0.04
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (24 bp):
AAAATATATATAATATATAGCTTT
Found at i:6548402 original size:37 final size:37
Alignment explanation
Indices: 6548346--6548658 Score: 310
Period size: 37 Copynumber: 8.5 Consensus size: 37
6548336 ATATAGTCTT
6548346 AAAACTATATATA-ATATATAGCTTTAAAAACATTTTTG
1 AAAA-TATATATATATATATAG-TTTAAAAACATTTTTG
* * *
6548384 AAAACATATATATAATATAAAGTTTTGAAAACATTTTT-
1 AAAATATATATAT-ATATATAG-TTTAAAAACATTTTTG
6548422 AAAA-ATATATA-ATATATAGTTTTAAAAACATTTTTCG
1 AAAATATATATATATATATAG-TTTAAAAACATTTTT-G
* *
6548459 AAAATATATAT-GATATATAGTTTTAAAACATTTTTG
1 AAAATATATATATATATATAGTTTAAAAACATTTTTG
* *
6548495 AAAATATATATA-ATATATAGTTTAGAAAACATGTTGG
1 AAAATATATATATATATATAGTTTA-AAAACATTTTTG
* * *
6548532 AAAATATATGTA-ATATATAGTTTTGAAAATATTTTTCG
1 AAAATATATATATATATATAG-TTTAAAAACATTTTT-G
* * *
6548570 -AAA-ATATATA-ATACATAGTTTTAAAACGTTTTTG
1 AAAATATATATATATATATAGTTTAAAAACATTTTTG
*
6548604 AAAATATATATA-ATATATAGTTTAGAAAACA-TGTTG
1 AAAATATATATATATATATAGTTTA-AAAACATTTTTG
6548640 AAAA-ATATATATAATATAT
1 AAAATATATATAT-ATATAT
6548659 GGGTTTTGAA
Statistics
Matches: 236, Mismatches: 24, Indels: 31
0.81 0.08 0.11
Matches are distributed among these distances:
34 1 0.00
35 44 0.19
36 61 0.26
37 83 0.35
38 26 0.11
39 21 0.09
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (37 bp):
AAAATATATATATATATATAGTTTAAAAACATTTTTG
Found at i:6548513 original size:111 final size:111
Alignment explanation
Indices: 6548346--6548707 Score: 475
Period size: 109 Copynumber: 3.3 Consensus size: 111
6548336 ATATAGTCTT
* * *
6548346 AAAACTATATATAATATATAGCTTTAAAAACATTTTTGAAAACATATATATAATATAAAGTTTTG
1 AAAA-TATATATAATATATAG-TTTTAAAACATTTTTG-AAA-ATATATATAATATATAGTTTAG
** *
6548411 AAAACAT-TTTTAAAA-ATATATAATATATAGTTTTAAAAACATTTTTCG
62 AAAACATGTTGAAAAATATATATAATATATAGTTTTAAAAATATTTTTCG
*
6548459 AAAATATATATGATATATAGTTTTAAAACATTTTTGAAAATATATATAATATATAGTTTAGAAAA
1 AAAATATATATAATATATAGTTTTAAAACATTTTTGAAAATATATATAATATATAGTTTAGAAAA
* * *
6548524 CATGTTGGAAAATATATGTAATATATAGTTTTGAAAATATTTTTCG
66 CATGTTGAAAAATATATATAATATATAGTTTTAAAAATATTTTTCG
* *
6548570 -AAA-ATATATAATACATAGTTTTAAAACGTTTTTGAAAATATATATAATATATAGTTTAGAAAA
1 AAAATATATATAATATATAGTTTTAAAACATTTTTGAAAATATATATAATATATAGTTTAGAAAA
* * *
6548633 CATGTTGAAAAATATATATAATATATGGGTTTTGAAAATGTTTTTTTCG
66 CATGTTGAAAAATATATATAATATAT-AGTTTT-AAAA-ATATTTTTCG
*
6548682 -AAATATATATAATAT-TATTTTTAAAA
1 AAAATATATATAATATATAGTTTTAAAA
6548708 TATATTATAG
Statistics
Matches: 223, Mismatches: 20, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
109 108 0.48
110 17 0.08
111 48 0.22
112 36 0.16
113 14 0.06
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (111 bp):
AAAATATATATAATATATAGTTTTAAAACATTTTTGAAAATATATATAATATATAGTTTAGAAAA
CATGTTGAAAAATATATATAATATATAGTTTTAAAAATATTTTTCG
Found at i:6548726 original size:27 final size:23
Alignment explanation
Indices: 6548682--6548730 Score: 62
Period size: 27 Copynumber: 2.0 Consensus size: 23
6548672 GTTTTTTTCG
6548682 AAATATATATAATATTATTTTTA
1 AAATATATATAATATTATTTTTA
6548705 AAATATATTATAGTATACTTATTTTT
1 AAATATA-TATA--ATA-TTATTTTT
6548731 TTTAGGTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 7 0.32
24 4 0.18
26 3 0.14
27 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
AAATATATATAATATTATTTTTA
Found at i:6549890 original size:17 final size:16
Alignment explanation
Indices: 6549843--6549899 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
6549833 ATTTGTCTTA
6549843 TATT-TTTTTCTTTCTT
1 TATTATTTTTCTTT-TT
6549859 TACTT-TTTTTC-TTTT
1 TA-TTATTTTTCTTTTT
6549874 TATTATTTGTTCTTTTT
1 TATTATTT-TTCTTTTT
*
6549891 TAATATTTT
1 TATTATTTT
6549900 AATTTTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
14 2 0.06
15 7 0.19
16 8 0.22
17 19 0.53
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (16 bp):
TATTATTTTTCTTTTT
Found at i:6561800 original size:25 final size:25
Alignment explanation
Indices: 6561766--6561820 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
6561756 ATTTTTTCCC
6561766 AAAAATATATATAATATATAG-TCTT
1 AAAAATATATATAATATATAGCT-TT
*
6561791 AAAACTATATATAATATATAGCTTT
1 AAAAATATATATAATATATAGCTTT
6561816 AAAAA
1 AAAAA
6561821 CATTTTCGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (25 bp):
AAAAATATATATAATATATAGCTTT
Found at i:6561845 original size:35 final size:37
Alignment explanation
Indices: 6561791--6562028 Score: 297
Period size: 37 Copynumber: 6.5 Consensus size: 37
6561781 ATATAGTCTT
* *
6561791 AAAACTATATATAATATATAGCTTTAAAAACATTTTCG
1 AAAA-TATATATAATATATAGTTTTAAAAACATTTTTG
* *
6561829 AAAACATATATAATATATAGTTTTGAAAACATTTTTG
1 AAAATATATATAATATATAGTTTTAAAAACATTTTTG
6561866 -AAA-ATATATAATATATAGTTTTAAAAACATTTTTG
1 AAAATATATATAATATATAGTTTTAAAAACATTTTTG
*
6561901 AAAATATATATAATATATAGTTTTGAAAACATTTTTTG
1 AAAATATATATAATATATAGTTTTAAAAACA-TTTTTG
*
6561939 AAAATATATATAATATATAG-TTT-AAAACGTTTTTG
1 AAAATATATATAATATATAGTTTTAAAAACATTTTTG
** * * *
6561974 AAGTTATATATAATATATAG-TTTAGAAAAAATGTTGG
1 AAAATATATATAATATATAGTTTTA-AAAACATTTTTG
* *
6562011 AAAATATATGTAAAATAT
1 AAAATATATATAATATAT
6562029 TGTTGGGATT
Statistics
Matches: 178, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
35 58 0.33
36 11 0.06
37 79 0.44
38 30 0.17
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.40
Consensus pattern (37 bp):
AAAATATATATAATATATAGTTTTAAAAACATTTTTG
Found at i:6561879 original size:72 final size:71
Alignment explanation
Indices: 6561797--6562019 Score: 313
Period size: 72 Copynumber: 3.1 Consensus size: 71
6561787 TCTTAAAACT
* *
6561797 ATATATAATATATAGCTTTAAAAACATTTTCGAAAACATATATAATATATAGTTTTGAAAACATT
1 ATATATAATATATAG-TTTAAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACATT
6561862 TTTGAAA
65 TTTGAAA
6561869 ATATATAATATATAGTTTTAAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACATT
1 ATATATAATATATAG-TTTAAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACA-T
6561934 TTTTGAAAA
64 TTTTG-AAA
* ** * * *
6561943 TATATATAATATATAGTTT-AAAACGTTTTTGAAGTTATATATAATATATAGTTTAGAAAAAATG
1 -ATATATAATATATAGTTTAAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACATT
*
6562007 TTGGAAA
65 TTTGAAA
6562014 ATATAT
1 ATATAT
6562020 GTAAAATATT
Statistics
Matches: 138, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
70 6 0.04
71 3 0.02
72 64 0.46
73 44 0.32
74 6 0.04
75 15 0.11
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.41
Consensus pattern (71 bp):
ATATATAATATATAGTTTAAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACATTT
TTGAAA
Found at i:6564411 original size:21 final size:22
Alignment explanation
Indices: 6564385--6564439 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
6564375 GTTTCAGTCA
6564385 TTCGAGCAAGATG-ATAAGTA-C
1 TTCGAGCAAGATGTATAAG-ACC
*
6564406 TTCGAGC--CATGTATAAGACC
1 TTCGAGCAAGATGTATAAGACC
6564426 TTCGAGCAAGATGT
1 TTCGAGCAAGATGT
6564440 TTTCATGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 4 0.14
20 13 0.46
21 7 0.25
22 4 0.14
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (22 bp):
TTCGAGCAAGATGTATAAGACC
Found at i:6565096 original size:257 final size:256
Alignment explanation
Indices: 6563500--6572449 Score: 9066
Period size: 257 Copynumber: 34.9 Consensus size: 256
6563490 TTAGAAAATG
* * * * *
6563500 AGAAAGCA-ATTTTCAAAGTTTCTTGCCAAGTAGACTATTTCCAAAATTGGTAAGTACTTCAAGT
1 AGAAAG-AGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGC
** * * * *
6563564 CATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAG
64 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6563629 CTGATAAGTTCTTAGGGCCATCTATTAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGT-GA
129 ATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-
* * * * *
6563693 AAAATGACAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAG
190 AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAG
6563758 TA
255 TA
* * * * *
6563760 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATGTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * *
6563825 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTGT--G----T---GCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * *
6563880 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTA-AAGA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAA-A
* * *
6563944 ATGAGAAAACGATTTTCAAAATTTCTC-TTTGAAGAATTTT-AGAAAATGAAAATTTTGAAAAGT
193 ATGAGAAAACGATTTTCAAAGTTTCTCATTT--AGTATTTTCAGAAAATAAAAATTTTGAAAAGT
6564007 A
256 A
* * ** **
6564008 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTT
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * * *
6564073 ATCAGTAAGTCATTC-AACATTATGATTAAATCCTTCGGGCCATCAGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6564137 TGATAAGTCCTTTAGGCCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCC-TTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
** *
6564202 TGAGAAAGTGATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAAATAAAAATTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* * * * *
6564266 TGAAAGAGATTTCCAAAGTTTCTTGCCGGGTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6564331 ATCAGTAAGTCTTTCGACCACGATGATTAAAT-CTTTATGGTCATGTTTCAGTCATTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6564395 ATGATAAGTACTTCGAGCCATGTATAAGACCTTCGAGCAAGATGTTTTCATGTGATATTTGT-GA
129 ATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-
* * * * * *
6564459 AAAATGAGAAAACAATTTTCAGAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAT
190 AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAG
6564524 TA
255 TA
* * * *
6564526 AGAAAGCGTTTTCCAAAGTTACTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6564591 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTCATTTGTCAGACTTTCGAACAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * ** *
6564655 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGAT-TCTTTCATATGATTTGCAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGT-TTTCATATGATTTTTAGAAA
** * * *
6564719 ATGAGAAAATAATTTTCAAAATTTCTCATTTAAG-AATTT-AGAAAATAAAATTTTTGAAAAGTA
193 ATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * ** *
6564782 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* ** * * * *
6564847 ATCAGTAAGTCATTC-AAAATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAAA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * *
6564911 TGATAAGGCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* *
6564976 TGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * *
6565039 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGGAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * *
6565104 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGTGTCATGTTTCAGTCATTCTAGCAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6565169 TGATAAGTTCTTAGGGCCATCTACAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGT-GAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-A
* * * *
6565233 AAATGAGAAAATGATTTTCAAA-TTTTTCATTTAGTATTTTCAAAAAAATAAAATTTTTGAAAAG
191 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTC-AGAAAATAAAAATTTTGAAAAG
6565297 TA
255 TA
* * * * *
6565299 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * * *
6565364 ATTAGTAAGTTTTTCGAGCATGATGATTAAATACTATT-GGTTAACTGTCAGACATTCTAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * * *
6565428 ATTATAAGTCCTTGGGACATCTATAAGACCTTTGGGTAGGATGATTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * ** * *
6565493 TGAGAAAACAATTTTAAAAAATTCTCATTTAAGAATTTT-AGAAAATAAAATTTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * * *
6565556 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTAGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* ** ** * ** * *
6565621 ATTAGTAAGTAATTC-AAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6565685 TGATAAGTCCTTCGTGCCATCAATAAGACATTCGGGTAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
*
6565750 TGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* * * *
6565814 AG--AGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTAGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
** * * * * *
6565877 ATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTGATGTTTAAGTCTTTCGAGCAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * * * *
6565942 TGATAAATTCTTAGGGCCATCTATAAGACCTTCAGTCAAGTTGTTTTCATGTGATATTTGT-GAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-A
** * * *
6566006 AAATGAGAAAATAATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGT
191 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGT
6566071 A
256 A
* * * *
6566072 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6566137 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTATCAGACTTTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6566201 ATTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * *
6566266 TGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * ** *
6566329 AGAAAGTGGTTTCCAAAGTTTCTTACCATGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6566394 ATCAGTAATTCATTC-AACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * * * *
6566458 TGATATGTCCTTTAGACCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCC-TTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* **
6566523 TGAGAAAGA-GATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAAATAAAAATTTTGAATTGTA
194 TGAGAAA-ACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* * *
6566587 TGAAAGAGATTTCCAAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6566652 ATCAGTAAGTCTTTCGACCACGATGATTAAAT-CTTTATGGTCATGT-TCAGTCATTCGAGCACG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGGTCATCTGTCAGTCTTTCGAGCAAG
* *
6566715 ATGATAAGTCCTT----C--C------A-------GCAAGATGTTTTCATGTGATATTTGT-GAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-A
* ** * * * * *
6566760 AAATGAGAAAACAATTTTCAGTGTTTTTAATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATT
191 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGT
6566825 A
256 A
* * * * *
6566826 AGAAAGCGTTTTACAAAGTTTTTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * *
6566891 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTGTCAGACTTTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * ** * *
6566955 ATTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTTGGATGTTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTT-TTAGAAA
* * * *
6567020 ATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTAGAAAAGTA
193 ATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * * *** **
6567084 AGAAAGTGGTTTCCAAAGTTTCCTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTTGTT
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6567149 ATCAGTAAGTCATTC-AACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6567213 TGATAAGTCCTTCAGGCCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * * **
6567278 TGAGAAAGCGATTTTCAAAGTTTCTCATTTGGTATTTTCATAAAAATAAATTTTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* * * * *
6567342 TGAAAGAGATTTCCAAAGTTTCTTGCCGGGTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6567407 ATCAGTAAGTCTTTCGACCACGATGATTAAAT-CTTTATGGTCATGTTTCAGTCATTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * * *
6567471 ATGATAAGTACTTCGAGCCATGTATAAGTCCTTCGAGCAAGATGTTTTCATGTGATATTTGT-GA
129 ATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-
* * * * * * *
6567535 AAAATGAGAAAACAATTTTCAGAGTTTTTCAATTAGTATTTTCAAAAAATAAAATTTTTGAAAAT
190 AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAG
6567600 TA
255 TA
* * * *
6567602 AGAAAGCGTTTTACAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* ** *
6567667 ATTAGTAAGTCTTTCGAGCATGATGATTAAAAACTATT-GGTCATCTGTCAGACTTTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6567731 ATTATAAGTCATTGGGCCATCTATAAGACCTTTGGGTAGGAT-TCTTTCATATGATTTGTAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGT-TTTCATATGATTTTTAGAAA
* * * * *
6567795 ATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTT-GGAAAATAAAATTTTTGAAAAGTA
193 ATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * * * ** *
6567859 AGAAAGTGGTTTCCAAAGTTTCTTGCCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTGGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * * *
6567924 ATCAGTAAGTCATTC-AACATTATGATTAAATCCTTTGGGTCATCTTTCATTCTTTTGAGTAAAA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * *
6567988 TGATAAGGCCTTCGGGCCATCTATAAGACATTCGGGCAGAATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * *
6568053 TGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAATGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* *
6568116 AGAAAGAGATTTCCAAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6568181 ATCAGT-AGTTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGCT-TCAGTCATTCTAGCAT
65 ATCAGTAAG-TCTTTCGAGCATGATGATTAAATCCTTTGGGTCAT-CTGTCAGTCTTTCGAGCAA
* * * * * * * *
6568244 GATGATAAGTTCTTAGCGCCATCTACAAAACCTTCGGTCAAGATGTTTTCATGTGATACTTGT-G
128 GATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT--TTTTAG
* * * * *
6568308 AAAAATGAGAAAATGATTTTCAAAGTTTTTCATTTACTATTTTCAAAAAAATAAAATTTTTGAAA
190 -AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTC-AGAAAATAAAAATTTTGAAA
6568373 AGTA
253 AGTA
* * * * * *
6568377 AGAAAGCGTTTTCCATAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6568442 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTGTCAGACTTTCTAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6568506 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * * ** *
6568571 TAAGAAAACAATTTTAAAAAATTCTCATTTAAGAATTTT-AGAAAATCAAAAATTTTTGAAAAGT
194 TGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAAT-AAAAA-TTTTGAAAAGT
6568635 A
256 A
* * * * *
6568636 AGAAAGTGGTTTCCAAAGTTTCTTACAAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTAGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTAC-CAGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
** ** * ** * *
6568701 ATCAGTAAGTAATTC-AAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6568765 TGATAAGTCCTTCGTGCCATCAATAAGACATTCGGGGTAGGATGTTTTAATATGATTTTTA-AAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTC-GGGCAGGATGTTTTCATATGATTTTTAGAAA
*
6568829 ATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
193 ATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* * *
6568894 AG--AGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* ** * * * *
6568957 ATCAGTAAGCCTTTCGAGCACAATGATTAAATCCTTAGGGTCATGTTTAAGTCTTTCGAGCAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * ** * *
6569022 TGATAAATTCTTAGGGCCATCTATAAGACCTTCGGTTAAGATGTTTTCATGTGATATTTGT-GAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-A
** * * * *
6569086 AAATGAGAAAATAATTTTCAAAGTTTTTCATTTAGTATTTTAAAAAAATAAAATTTTTGAAAAGT
191 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGT
6569151 A
256 A
*** * *
6569152 AGAAAGCTTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6569217 ATTAATAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTGTCAGACTTTCTAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6569281 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * * * *
6569346 TGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTGAAAATTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * * * ** **
6569409 AGAAAGTGGTTTCCAAAGCTTCTTACCAAGTACACTATTTCCAAAATTGGTAAGTCCTTTGGGTT
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
** * * ** * * *
6569474 ATCAGTAAGTAATTC-AACATTATGATTAAATCCTTCAGGTCATTTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * *
6569538 TGATAAGTCCTTCGGGCCAACTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* *
6569603 TGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGCA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* * *
6569667 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCGTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
** * * * * *
6569732 ATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTCTTGTTTCAGTCATTCGAGCAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * *
6569797 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGT-GAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-A
* * * * * **
6569861 AAATAAGAAAATGATTTTTAAAGTTTTTCATTTAGTATTTTCAAAAAATAAATTTTTTGAAAAGT
191 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGT
6569926 A
256 A
* * * * *
6569927 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCATTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6569992 ATTAGTATGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTGTCAGACTTTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * ** ** * *
6570056 ATTATAAGTCCTTGGGCCATCTCTAAGGCCTTTAGGTTGGATGTTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * * * *
6570121 AGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTAGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * * * *
6570184 AGAAAGTGGTTTCCAAAGTTTCCTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTCGGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * *
6570249 ATCAGTAAGTCATTC-AACATTATGATTAACTCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6570313 TAATAAGTACTTCGGGCCATATATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* *
6570378 TGAGAAAGCGATTTTCAAAGTTTCTTATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * *
6570441 AGAAAGAGATTTCAAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * * * * * *
6570506 CTTAGCAAGTCTTTCTAGAACGATGATT-ACTTCTTTAGGGTCATGTTTCAGTCATTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGGTCATCTGTCAGTCTTTCGAGCAAG
* * ** * *
6570570 ATGATAAGTTCTTAGGGCCATCTATAAGACCTTCAGTTAAGATGTTTTCATGTGATATTTGT-GA
129 ATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-
** * * *
6570634 AAAATGAGAAATTGATTTTCACAGTTTTTCATTTAGTATTTTCAG-AAATAAAATTTTTGAAAAG
190 AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAG
6570698 TA
255 TA
* * * *
6570700 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6570765 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTATCAGACTTTCGAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6570829 ATTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * * *
6570894 TGAGAAAACGATTTTCAAAATTTCTCATCTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCAT-TTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * ** *
6570957 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * *
6571022 ATCAATAATTCATTC-AACATTATGATTAAATCCTTT-GGTCATCTGTCATTCTTTCGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
** * * * * **** *
6571085 TGATATTTCCTTTAGACCATCTATAAGACATACCAATAGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCC-TTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* **
6571150 TGAGAAAGA-GATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAAATAAAAATTTTGAATTGTA
194 TGAGAAA-ACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* * *
6571214 TGAAAGAGATTTCCAAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * *
6571279 ATCAGTAAGTCTTTCGACCACGATGATTAAAT-CTTTATGGTCATGTTTCAGTCATTCGAGCACG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGGTCATCTGTCAGTCTTTCGAGCAAG
* *
6571343 ATGATAAGT-C-T------TC-----GA-------GCAAGATGTTTTCATGTGATATTTGT-GAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-A
* ** * * * * *
6571387 AAATGAGAAAACAATTTTCATTGTTTTTAATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATT
191 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGT
6571452 A
256 A
** * * * *
6571453 AGAAATCGTTTTACAAAGTTTCTTACCTAGTAGACTATTTCTAAAATTGGTAAGTCCTTAAGGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * *
6571518 ATTAGTAAGTCTTTCGAGCATGATGATTAAAT-ATTATTGGACATTTGTCAGACTTTCGAACAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-TGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6571582 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTATAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * ** * *
6571647 TGAGAAAACAATTTTCAAAATTTCTCATTTAAAAATTTT-AGAAAATGAAAATTTTGGAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * ** *
6571710 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * *
6571775 ATCAGTAAGTCATTC-AACATTATGATTAACTCCTTTGGGTCATCTGTCATTCTTTTGAGTAAGA
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGA
* * * * *
6571839 TGATAAGTCCTTCAGGACATCTATAAGACATTCGGGCCGGATGTTTTAATATGATTTTTAGAAAA
130 TGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* * *
6571904 TGAGAAAACGATATTCAAATTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAAAGTA
194 TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
*
6571967 AGAAAGAGATTTCCAAAGTTTCTTACCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * * * * * *
6572032 ATTAGTAAGTGTTACAAGCACGATGATTAAAT-CTTTAGGGTCATGTTTCAGTCATTCTAGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * *
6572096 ATGATAAGTTCTTAGGGCCATCTACAAGACCTTCGGTCAAGAGGTTTTCATGTGATATTTGT-GA
129 ATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-TTT-TAG-
* * * * **
6572160 AAAATGAGAAAATGATTTTCAAAGTTTTTCATTAAGTATTTTCAAAAAAATAAATTTTTTGAAAA
190 AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTC-AGAAAATAAAAATTTTGAAAA
6572225 GTA
254 GTA
* * * * * *
6572228 AGAAAGCGTTTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATGCC
1 AGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCC
* * * * *
6572293 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTTATCTGTCAGACTTTCGTGCAAG
65 ATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TTGGGTCATCTGTCAGTCTTTCGAGCAAG
* * * * * * *
6572357 ATTATAAGACCTTGGGCCATCTATAAGACCTTTGGGAAGGATGCTTTCATATGATTTGTAAAAAA
129 ATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAA
* **
6572422 TGAGAAAACAATTTTCAAAAATTCTCAT
194 TGAGAAAACGATTTTCAAAGTTTCTCAT
6572450 AAATAAGTAA
Statistics
Matches: 7145, Mismatches: 1314, Indels: 464
0.80 0.15 0.05
Matches are distributed among these distances:
238 32 0.00
239 251 0.04
240 108 0.02
241 3 0.00
244 1 0.00
245 3 0.00
246 2 0.00
247 30 0.00
248 115 0.02
249 9 0.00
250 38 0.01
251 16 0.00
252 3 0.00
253 2 0.00
254 3 0.00
255 97 0.01
256 780 0.11
257 2028 0.28
258 1165 0.16
259 918 0.13
260 1125 0.16
261 403 0.06
262 11 0.00
263 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (256 bp):
AGAAAGAGATTTCCAAAGTTTCTTACCAGTAGACTATTTCCAAAATTGGTAAGTCCTTCAGGCCA
TCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGAT
GATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTTTAGAAAATG
AGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
Found at i:6565593 original size:774 final size:774
Alignment explanation
Indices: 6563500--6584803 Score: 25195
Period size: 775 Copynumber: 27.6 Consensus size: 774
6563490 TTAGAAAATG
* * * *
6563500 AGAAAGCA-ATTTTCAAAGTTTCTTGCCAAGTAGACTATTTCCAAAATTGGTAAGTACTTCAAGT
1 AGAAAG-AGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGC
*
6563564 CATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAG
65 CATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAG
* *
6563629 CTGATAAGTTCTTAGGGCCATCTATTAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAA
130 ATGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAA
*
6563694 AAATGACAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGT
195 AAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGT
*
6563759 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATGTCCAAAATTGGTAAGTCCTTAATGC
260 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGC
6563824 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGT--G----T---GCAAG
325 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAG
*
6563880 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAGAA
390 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAA
*
6563945 TGAGAAAACGATTTTCAAAATTTCTC-TTTGAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAA
455 TGAGAAAACAATTTTCAAAATTTCTCATTT-AAGAATTTTAGAAAATGAAAATTTTGAAAAGTAA
* *
6564009 GAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTTA
519 GAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCA
* * *
6564074 TCAGTAAGTCATTCAACATTATGATTAAATCCTTCGGGCCATCAGTCATTCTTTCGAGTAAGATG
584 TCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATG
** * *
6564139 ATAAGTCCTTTAGGCCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAATG
649 ATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATG
* *
6564204 AGAAAGTGATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAAATAAAAATTTTGAAAAGTA
714 AGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* * *
6564266 TGAAAGAGATTTCCAAAGTTTCTTGCCGGGTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6564331 ATCAGTAAGTCTTTCGACCACGATGATTAAATCTTTATGGTCATGTTTCAGTCATTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * *
6564396 TGATAAGTACTTCGAGCCATGTATAAGACCTTCGAG-CAAGATGTTTTCATGTGATATTTGTGAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCG-GTCAAGATGTTTTCATGTGATATTTGTGAA
** * *
6564460 AAATGAGAAAACAATTTTCAGAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATT
195 AAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGT
* *
6564525 AAGAAAGCGTTTTCCAAAGTTACTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGC
260 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGC
* * *
6564590 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATTTGTCAGACTTTCGAACAAG
325 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAG
*
6564655 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGAT-TCTTTCATATGATTTGCAAAAA
390 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGT-TTTCATATGATTTGTAAAAA
*
6564719 ATGAGAAAATAATTTTCAAAATTTCTCATTTAAGAA-TTTAGAAAAT-AAAATTTTTGAAAAGTA
454 ATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAA-TTTTGAAAAGTA
6564782 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
518 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
* *
6564847 ATCAGTAAGTCATTCAAAATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAAAT
583 ATCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGAT
*
6564912 GATAAGGCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAAT
648 GATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAAT
*
6564977 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAAAGTA
713 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
*
6565039 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGGAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* *
6565104 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGTGTCATGTTTCAGTCATTCTAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
*
6565169 TGATAAGTTCTTAGGGCCATCTACAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
6565234 AATGAGAAAATGATTTTCAAA-TTTTTCATTTAGTATTTTCAAAAAAATAAAATTTTTGAAAAGT
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTC-AAAAAATAAAATTTTTGAAAAGT
*
6565298 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATGC
260 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGC
* * * *
6565363 CATTAGTAAGTTTTTCGAGCATGATGATTAAATACTATTGGTTAACTGTCAGACATTCTAGCAAG
325 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAG
* *
6565428 ATTATAAGTCCTTGGGACATCTATAAGACCTTTGGGTAGGATGATTTCATATGATTTGTAAAAAA
390 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAA
* *
6565493 TGAGAAAACAATTTTAAAAAATTCTCATTTAAGAATTTTAGAAAAT-AAAATTTTTGAAAAGTAA
455 TGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAA-TTTTGAAAAGTAA
*
6565557 GAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTAGGTCA
519 GAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCA
* * * **
6565622 TTAGTAAGTAATTCAAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGTAAGATG
584 TCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATG
* * *
6565687 ATAAGTCCTTCGTGCCATCAATAAGACATTCGGGTAGGATGTTTTAATATGATTTTTAGAAAATG
649 ATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATG
6565752 AGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
714 AGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* *
6565814 AG--AGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTAGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * *
6565877 ATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTGATGTTTAAGTCTTTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * *
6565942 TGATAAATTCTTAGGGCCATCTATAAGACCTTCAGTCAAGTTGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
*
6566007 AATGAGAAAATAATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
6566072 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
*
6566137 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTATCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6566202 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
*
6566267 GAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
* *
6566332 AAGTGGTTTCCAAAGTTTCTTACCATGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
*
6566397 AGTAATTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
* ** * * *
6566462 ATGTCCTTTAGACCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
* * **
6566527 AAAGAGATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAAATAAAAATTTTGAATTGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* *
6566587 TGAAAGAGATTTCCAAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * *
6566652 ATCAGTAAGTCTTTCGACCACGATGATTAAATCTTTATGGTCATG-TTCAGTCATTCGAGCACGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
*
6566716 TGATAAG----T-----C--CT-T-----C--CAG-CAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
** ** * *
6566761 AATGAGAAAACAATTTTCAGTGTTTTTAATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
* * *
6566826 AGAAAGCGTTTTACAAAGTTTTTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
6566891 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
* *
6566956 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTTGGATGTTTTCATATGATTTGTAAAAAAA
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGT-AAAAAA
* *
6567021 TGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTAGAAAAGTAAG
455 TGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAG
* ** *
6567086 AAAGTGGTTTCCAAAGTTTCCTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTTGTTAT
520 AAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCAT
*
6567151 CAGTAAGTCATTCAACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGTAAGATGA
585 CAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGA
* * *
6567216 TAAGTCCTTCAGGCCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
650 TAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
* * **
6567281 GAAAGCGATTTTCAAAGTTTCTCATTTGGTATTTTCATAAAAATAAATTTTTTGAAAAGTA
715 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* * *
6567342 TGAAAGAGATTTCCAAAGTTTCTTGCCGGGTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6567407 ATCAGTAAGTCTTTCGACCACGATGATTAAATCTTTATGGTCATGTTTCAGTCATTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * * *
6567472 TGATAAGTACTTCGAGCCATGTATAAGTCCTTCGAG-CAAGATGTTTTCATGTGATATTTGTGAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCG-GTCAAGATGTTTTCATGTGATATTTGTGAA
** * * *
6567536 AAATGAGAAAACAATTTTCAGAGTTTTTCAATTAGTATTTTCAAAAAATAAAATTTTTGAAAATT
195 AAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGT
* *
6567601 AAGAAAGCGTTTTACAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGC
260 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGC
* *
6567666 CATTAGTAAGTCTTTCGAGCATGATGATTAAAAACTATTGGTCATCTGTCAGACTTTCGAGCAAG
325 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAG
*
6567731 ATTATAAGTCATTGGGCCATCTATAAGACCTTTGGGTAGGAT-TCTTTCATATGATTTGTAAAAA
390 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGT-TTTCATATGATTTGTAAAAA
*
6567795 ATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTGGAAAAT-AAAATTTTTGAAAAGTA
454 ATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAA-TTTTGAAAAGTA
* *
6567859 AGAAAGTGGTTTCCAAAGTTTCTTGCCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTGGGTC
518 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
* * *
6567924 ATCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTTTCATTCTTTTGAGTAAAAT
583 ATCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGAT
* *
6567989 GATAAGGCCTTCGGGCCATCTATAAGACATTCGGGCAGAATGTTTTAATATGATTTTTAGAAAAT
648 GATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAAT
* *
6568054 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAATGTA
713 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
*
6568116 AGAAAGAGATTTCCAAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6568181 ATCAGT-AGTTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGCTTCAGTCATTCTAGCATG
66 ATCAGTAAG-TCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAG
* * * *
6568245 ATGATAAGTTCTTAGCGCCATCTACAAAACCTTCGGTCAAGATGTTTTCATGTGATACTTGTGAA
130 ATGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAA
*
6568310 AAATGAGAAAATGATTTTCAAAGTTTTTCATTTACTATTTTCAAAAAAATAAAATTTTTGAAAAG
195 AAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTC-AAAAAATAAAATTTTTGAAAAG
* *
6568375 TAAGAAAGCGTTTTCCATAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATG
259 TAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATG
*
6568440 CCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCTAGCAA
324 CCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAA
*
6568505 GATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAA
389 GATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAA
* * * *
6568570 ATAAGAAAACAATTTTAAAAAATTCTCATTTAAGAATTTTAGAAAATCAAAAATTTTTGAAAAGT
454 ATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAAT-GAAAA-TTTTGAAAAGT
* *
6568635 AAGAAAGTGGTTTCCAAAGTTTCTTACAAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTAGGT
517 AAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGT
* * **
6568700 CATCAGTAAGTAATTCAAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGTAAGA
582 CATCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGA
* * *
6568765 TGATAAGTCCTTCGTGCCATCAATAAGACATTCGGGGTAGGATGTTTTAATATGATTTTTA-AAA
647 TGATAAGTCCTTCGGGCCATCTATAAGACATTC-GGGCAGGATGTTTTAATATGATTTTTAGAAA
6568829 ATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
711 ATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
*
6568894 AG--AGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * *
6568957 ATCAGTAAGCCTTTCGAGCACAATGATTAAATCCTTAGGGTCATGTTTAAGTCTTTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* *
6569022 TGATAAATTCTTAGGGCCATCTATAAGACCTTCGGTTAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* *
6569087 AATGAGAAAATAATTTTCAAAGTTTTTCATTTAGTATTTTAAAAAAATAAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
*
6569152 AGAAAGCTTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* *
6569217 ATTAATAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCTAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6569282 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
*
6569347 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAATTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
* * *
6569412 AAGTGGTTTCCAAAGCTTCTTACCAAGTACACTATTTCCAAAATTGGTAAGTCCTTTGGGTTATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
* ** *
6569477 AGTAAGTAATTCAACATTATGATTAAATCCTTCAGGTCATTTGTCATTCTTTCGAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
*
6569542 AAGTCCTTCGGGCCAACTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
*
6569607 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGCA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
*
6569667 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCGTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* *
6569732 ATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTCTTGTTTCAGTCATTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
6569797 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* * *
6569862 AATAAGAAAATGATTTTTAAAGTTTTTCATTTAGTATTTTCAAAAAATAAATTTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
*
6569927 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCATTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
*
6569992 ATTAGTATGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
* * * * *
6570057 TTATAAGTCCTTGGGCCATCTCTAAGGCCTTTAGGTTGGATGTTTTCATATGATTTGTAAAAAAA
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
* *
6570122 GAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTAGAAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
* *
6570187 AAGTGGTTTCCAAAGTTTCCTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTCGGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
* *
6570252 AGTAAGTCATTCAACATTATGATTAACTCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATAAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
* *
6570317 AAGTACTTCGGGCCATATATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
*
6570382 AAAGCGATTTTCAAAGTTTCTTATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
*
6570441 AGAAAGAGATTTCAAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * * * ** *
6570506 CTTAGCAAGTCTTTCTAGAACGATGATTACTTCTTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* *
6570571 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCAGTTAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* * *
6570636 AATGAGAAATTGATTTTCACAGTTTTTCATTTAGTATTTTC-AGAAATAAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
6570700 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
*
6570765 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTATCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6570830 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
* *
6570895 GAGAAAACGATTTTCAAAATTTCTCATCTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
*
6570960 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
* *
6571025 AATAATTCATTCAACATTATGATTAAATCCTTT-GGTCATCTGTCATTCTTTCGAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
** ** * * ****
6571089 ATTTCCTTTAGACCATCTATAAGACATACCAATAGGATGTTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
* * **
6571154 AAAGAGATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAAATAAAAATTTTGAATTGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* *
6571214 TGAAAGAGATTTCCAAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * *
6571279 ATCAGTAAGTCTTTCGACCACGATGATTAAATCTTTATGGTCATGTTTCAGTCATTCGAGCACGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
6571344 TGATAAG-TC-T-------TC-----GA------G-CAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
** ** * *
6571388 AATGAGAAAACAATTTTCATTGTTTTTAATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
* * * *
6571453 AGAAATCGTTTTACAAAGTTTCTTACCTAGTAGACTATTTCTAAAATTGGTAAGTCCTTAAGGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* ** * *
6571518 ATTAGTAAGTCTTTCGAGCATGATGATTAAATATTATTGGACATTTGTCAGACTTTCGAACAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
* *
6571583 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTATAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
* *
6571648 GAGAAAACAATTTTCAAAATTTCTCATTTAAAAATTTTAGAAAATGAAAATTTTGGAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
6571713 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
* *
6571778 AGTAAGTCATTCAACATTATGATTAACTCCTTTGGGTCATCTGTCATTCTTTTGAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
* * *
6571843 AAGTCCTTCAGGACATCTATAAGACATTCGGGCCGGATGTTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
* * * *
6571908 AAAACGATATTCAAATTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAAAGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
*
6571967 AGAAAGAGATTTCCAAAGTTTCTTACCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * * * *
6572032 ATTAGTAAGTGTTACAAGCACGATGATTAAATCTTTAGGGTCATGTTTCAGTCATTCTAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* *
6572097 TGATAAGTTCTTAGGGCCATCTACAAGACCTTCGGTCAAGAGGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* *
6572162 AATGAGAAAATGATTTTCAAAGTTTTTCATTAAGTATTTTCAAAAAAATAAATTTTTTGAAAAGT
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTC-AAAAAATAAAATTTTTGAAAAGT
* *
6572227 AAGAAAGCGTTTTCCAAATTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATGC
260 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGC
*
6572292 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGTGCAAG
325 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAG
* * *
6572357 ATTATAAGACCTTGGGCCATCTATAAGACCTTTGGGAAGGATGCTTTCATATGATTTGTAAAAAA
390 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAA
* * * * * * *
6572422 TGAGAAAACAATTTTCAAAAATTCTCA--T-A-AA--TAAGTAATTCAAAATTATG---A-T--T
455 TGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAG
** * * * * * * * * * * *
6572475 AAA-T-CCTT-C--AG-GTC--ATC-TGT-CATTCTTTCGAGTAAGA-TGATAAGTCCTTCGTGC
520 AAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCA--AA-ATTGGTAAGTCCTTTGGGT
* ** ** * * * * * ***** *
6572529 CATCTA-TAAGACATTCGGGCAGGATGTTTTAA---TAT--G--AT-TTTTAGAAAAT-GAGAAA
582 CATC-AGTAAGTCATTC-AACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAA
** * * ** ** ** *
6572584 GCGATTTTCAAAGT--TTC---TCAT-T-T-AG-TATT--TTCA-GA----AAAATAAAAATTTT
645 --GATGAT--AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTT
* * * * * **
6572633 -GAAAAGTAAGAAAGCGATTTCCAAAGTTTCT--TTCCA--A--GT-AG--ACT----ATTTCCA
706 AGAAAA-TGAGAAAGCGATTTTCAAAGTTTCTCATT-TAGTATTTTCAGAAAATAAAAATTTTGA
*
6572684 AAA-TT
769 AAAGTA
* * *** * * * * *
6572689 GGTAAGTCCTTT---AAG---CTAT--CA-GTA-AGTCTTT-CAAGCACAATGATTAAATCCTT-
1 AGAAAGAGATTTCCAAAGTTTCT-TGCCAGGTAGACTATTTCCAA--A-ATTG-GTAAGTCCTTC
* * *** * * * * * * * *
6572742 AGGGACATGTTTCAA-TCTTTCGAGCAAGATGA-TAAATTCTTAGGGCCATCTATAAGACCTTCG
61 A-AGCCATCAGT-AAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCG
* * *
6572805 -GTC-A-A-GAT--G-T-TT-------TC------A---T--GT---GA--TATT--TGTGAAAA
124 AG-CAAGATGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATAT
* * ** **
6572837 ATGAG-AAAAT--G---AT--TTTCAA-AGTTTTTCATTTAGTATTTAAAAAAAATAAAATTTTT
188 TTGTGAAAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTT
6572893 GAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCC
253 GAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCC
6572958 TTAATGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTC
318 TTAATGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTC
* *
6573023 GTGCAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTG
383 GAGCAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTG
* * *
6573088 TAAAAAATGAGAAAACAATTTTCAAAATTTCTCATTTTAGAATTTTAGAAAATGAAAGTTTGGAA
448 TAAAAAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAA
*
6573153 AAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTACACTATTTCCAAAATTGGTAAGTCCTTT
513 AAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTT
* ** *
6573218 GGGTCATCAGTAAGTAATTCAACATTATGATTAAATCCTTCAGGTCATTTGTCATTCTTTCGAGT
578 GGGTCATCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGT
* *
6573283 AAGATGATAAGTCCTTCGGGCCAACTATAAGACATTCGGGCAGGAGGTTTTAATATGATTTTTAG
643 AAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAG
*
6573348 AAAATGAGAAAGCGATTTTCAAAG-TTCTCATTTAGTATTTTCAGAAAAATAAAAATTATGAAAA
708 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAA
6573412 GTA
772 GTA
* * *
6573415 TGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAATTTGGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* *
6573480 ATCAGTAAGTCTTTCGAGCACAATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGACCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* *
6573545 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCAGTCAAGATGTTTTCATTTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* *
6573610 AATGAGAAAATGATTTTCACAGTTTTTCATTTAGTGTTTTCAAAAAATAAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
6573675 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
6573740 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
* *
6573805 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTCTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
*
6573870 GAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
* * *
6573935 TAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTTCTTTTGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
** * *
6574000 AGTAAGTCATTCAACATTATGATTAAATCCTTCAGGTCATCTGTCATGCTTTCGAGTAACATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
* ** * * * * * *
6574065 ATGTCCTTTAGGCCATCTATAAGAGATACCGACATGATATTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
* * *
6574130 AAAGAGATTTTCAAAGTTTGTCATTTAGTATTTTCATAAAAATAAAAATTTTGAAAAGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTA
* ** * * *
6574190 TGAAAGAGATTTCGTAAGTTTCTTTCCAGGTAGACTATTTCCAAAATTGGAAAGTTCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * * *
6574255 ATCAGTAAGTCTTTCGACCCCGATGATTAAATCTTTATGGTCATGTTTCAGTGATTCGAG-AACG
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAA-G
* * * * * *
6574319 ATGATAAGTCCTTCGAGCCATGTATAAGACCTTCCAG-CGAGATGTTTTCATGTGATATTTGTGA
130 ATGATAAGTTCTTAGGGCCATCTATAAGACCTT-CGGTCAAGATGTTTTCATGTGATATTTGTGA
* ** ** *
6574383 GAAATGAGAAAACAATTTTCAGTGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAT
194 AAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAG
* * *
6574448 TAAGAAAGCGTTTTCGAGCATGATGATTAAATACTATTGGACATTTGTCAGAC--TTTCGAACAA
259 TAAGAAAGCGTTTTC---CA--AAG-TT---T-C--TT--AC-CTAGT-AGACTATTTC---CAA
* * * ** * * * * * ** *
6574511 GATT-ATAAGCCCTTGGT-CCATCTA-TAAGACCTTT-GGGTAGGATGCTTTCATA-TGATTTGT
305 AATTGGTAAGTCCTTAATGCCAT-TAGTAAG-TCTTTCGAGCATGATGATTAAATACT-ATTGGT
* **** * * * ** * *
6574571 AAAAAATGAGA-----AAACAATTTTCA-AAAT--TT---CTCAT-T-TAAGA-ATTT---TA-G
367 TATCTGTCAGACTTTCGAGCAAGATT-ATAAGTCCTTGGGC-CATCTATAAGACCTTTGGGTAGG
*** ** * * * **** * * * ** *
6574618 A--AAAT-A-AAAATTT-TGAAAAGTAAGAAAGTGGTTTCCAAAGTTTATTACCAAGT-AGACTA
430 ATGTTTTCATATGATTTGTAAAAAATGAGAAAACAATTTTCAAAATTT-CT--CATTTAAGAAT-
** * * *** * * ** *
6574677 TTTCCAAAATTGGTAAGTCCTTTGGGTCA-TCAGTAAGT-CATT-CAACA-TTATGATTA--AA-
491 TTTAGAAAA-T-GAAAAT--TTT-GAAAAGTAAGAAAGTGGTTTCCAA-AGTT-T-CTTACCAAG
* ** * * * ** * * *
6574735 T--CCT-TTGGGT-C-ATCTT--TCA-TTCTTTCGAGT-AAGATGATAAGTCCTTCAGGCCA-TC
548 TAGACTATT---TCCAAAATTGGTAAGTCCTTT-GGGTCATCA-G-TAAGTCATTCA--ACATTA
** * * * * * * * ** * * *
6574790 T-A-TAAGGCATTCGGGTAAGATGTTTTAATATGATTTTTAG-AAAATGAGAAAG-CGATT----
605 TGATTAAATCCTTTGGGT--CAT-CTGTCAT-T-CTTTCGAGTAAGATGA-TAAGTC-CTTCGGG
* ** **** * * ** ** * *
6574847 --TTC-A-AAG-TTTCTCATTTAGTAT-TTTCAGAAAATAAAAAATTT-GAAAAGTAAGAAAGAG
663 CCATCTATAAGACAT-TCGGGCAGGATGTTT----TAATATGATTTTTAGAAAA-TGAGAAAGCG
* ** * * ** * * * * *
6574905 ATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCA-AAATTGGTAAGTCCTTCAAGCCA-TC
722 ATTTTCAAAGTTTC-T--CATTTAG--TATTTTCAGAAAAT-AAAAAT-TTTGAA--AAGTA
* * * ** * *** * * *
6574965 A-AAA-AG-TCTTTC-GAGTATGATG--A-TTA-A--A-TTCCTTAGGGTCATGTTTCAGTCATT
1 AGAAAGAGAT-TTCCAAAGTTTCTTGCCAGGTAGACTATTTCC--AAAAT--TG-GTAAGTCCTT
* ** * * * ** *
6575019 CTAG-CAAGATGATAAGT-TCTTAGGGC-C-AT-ATTTAAGA-CCTTCGGGAAAGATATTTTCAT
60 CAAGCCATCA-G-TAAGTCT-TTCGAGCACGATGA-TTAA-ATCCTTAGGG--TCAT-GTTTCA-
* * * * * * * ** * *** * ** *
6575078 GTGATTTTTGTGAAAAATGAGAAAATGATT------TTC-A-AAGTTTTTC-ATTTAG-TATTTT
116 GTCA--TTCGAGCAAGATGA-TAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTT
* * * * * * * * **
6575133 CAAAAATATAAAATTT-TTAGAAGTAAGAAAGTG-TTCTTCAAAGTTTCTT-ACCTAGTATATTA
178 C----ATGTGATATTTGTGAAAAATGAGAAAATGATT-TTCAAAGTTT-TTCATTTAG--TA-T-
* * * * ** * * *
6575195 TTTCCATAATTAGTAAGTCCTT-AAGGCGATTAGTAAGTCTTTCAAGCGTGATGATT-AAATACT
233 TTTCAAAAAATA--AAATTTTTGAA----A--AGTAAG-----AAAGCGT--T--TTCCAA-AGT
* * *** * * ** * * *
6575258 ATTGGTTATCTTCCAGAC--TTTCGAGCAAGATT-ATAAGTCCTT-CGGCCA-TCGCTATGACAT
280 -TT-CTTACCTAGTAGACTATTTC---CAAAATTGGTAAGTCCTTAATGCCATTAG-TAAGTC-T
* * * * ** * * **** * *** * * *
6575318 TT-GGGTAGGATGTTTTCATA-TGATTTGTAAAAAATGAGA-AAACGATTTTCAAAATTTCTCAA
338 TTCGAGCATGATGATTAAATACT-ATTGGTTATCTGTCAGACTTTCGA---GCAAGA-TTAT-AA
* ** ** * *** * ** * * * * * *
6575380 TTAGGATT-TTCAGAAAAATAAAAGTTTTGACGTGGTA-GACTATTTCCA-A-AACTGGTAAGTC
397 GT--CCTTGGGC-CATCTATAAGACCTTT---G-GGTAGGA-TGTTTTCATATGATTTGTAA--A
*** * * * * * *
6575441 CTTTGAGCCATCAATAAGTCTTCCGAGCATGATGATTAAATCCTTAAGGTCGTGTTTCAGTCATT
452 AAATGAG--A-AAACAA-T-TTTC-A--A--A--ATT---T-C------TC--ATTTAAG-AATT
* * * * * ** ***
6575506 TGAGCAAGATGATAAGTCCTTCGAGCCATCTACAAGACCTTCGG--T-C-AAGATGTT-TT--CA
492 TTAG-AAAATGA-AAAT--TTTGA--AAAGT--AAGAAAGT-GGTTTCCAAAG-T-TTCTTACCA
* ** * * * ** * * ** * *
6575564 TGT-GA-TATTTGTGAAAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGT-ATTTTCAAAAA
546 AGTAGACTATTT-CCAAAATTG-GTAAGT-CCTTT---GGGTCATCAGTAAGTCA--TTC-----
* * * ** ** * * * * *
6575626 ATAAAATTTTTGAAAAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCA--A
598 --AACA-TTATG---A-T--TAAA-TCCTTT-----GGGTC--ATCT-GT-CATTCTTTCGAGTA
* *** * * * * * * *
6575689 A-ATTGGTAAGTCCTTAATGCCAT-TAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTT
644 AGA-TGATAAGTCCTTCGGGCCATCTA-TAAGACATTCGGGCAGGATG-TT--TTAATA-TGATT
*** * * *
6575752 ATCTGTCAGACTTTCATGCAA--GATTAT--AAGTCCTTGGGC-CATCTATAAG-ACCTTTGGGT
703 -T-T-T-AGAAAATGA-GAAAGCGATTTTCAAAGT--TT---CTCAT-T-T-AGTA--TTT---T
*** ** * *
6575811 -AGGATGTTTTCATATGATTTGTAAAG-A
750 CA-GA-AAATAAAAAT--TTTGAAAAGTA
* * * *** * * ** **
6575838 ATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAA
1 A-GA-AAGA-GATTTCCAAAGTTTCT--TGCCAG----GTAG--ACT----ATTTCCAAAA-TTG
* ** * * * * * ** * * **
6575903 GAAAGTGGGTTCCAAAGTTTCTTACAAAGTAGACTATTTCCAAAAC--TG-GTAAGTCCTTTTGG
50 GTAAGT-CCTT-C-AAG--CCAT-C--AGTA-AGTCTTTCGAGCACGATGATTAAATCCTTAGGG
* *** * * ** * * *
6575965 TTATCAGTAAGTCATTC-AACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGTAA
106 TCATGTTTCAGTCATTCGAGCAAGATGA-TAAGTTCTTAGGG----C---CA-TC--T--A-T-A
* *
6576029 GATGATAAGTCCTTCAGGCCATCTATAAGACATACCGACAGGATGTTTTAATATGAT-TTT-T-A
156 -A-G---A--CCTTC-GG---TC---AAG--AT--------G-T-TTTC-ATGTGATATTTGTGA
** * * *
6576091 GAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTGGTATTTTCATAAAAATAAAAATTTTGAAA
194 -AAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCA-AAAAATAAAATTTTTGAAA
* * * * ** *
6576156 AGTATGAAAGAGATTTCCAAAGTTTCTTGCCGGGTAGACTATTTCCATAATTGGTAAGTCCTTCA
257 AGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTT-A
* * * * * * * * * *
6576221 A-GCAATCAGTAAGTCTTTCGACCACGATGATTAAAT-CTTTATGGTCATGTATCAGTCATTCGA
321 ATGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTAT-TGGTTATCTGTCAGACTTTCGA
* * * * * * * *
6576284 GCAAGATGATAAGTCCTTCGAGCCATGTATAAGACCTTCGAGCAAGATGTTTTCATGTGATATTT
385 GCAAGATTATAAGTCCTT-GGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATG--ATTT
* * * * * * * *
6576349 GTGAAAAATGAGAAAACAATTTTTAGAGTTTTTCATTT-AGTATTTTCAAAAAAT-AAATTTTTG
447 GTAAAAAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTG
* * * * * *
6576412 AAAATTAACAAAGCGTTTTCCAAAGTTTCTTTCCTAGTAGACTATTTCCAAAATTGGTAAGTCCT
511 AAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCT
** * * * * * * **
6576477 TAAGGCCATTAGTAAGTCATTCGAGCATGATGATTAAATACTATT-GGTCATTTGTCAGACTTTC
576 TTGGGTCATCAGTAAGTCATTC-AACATTATGATTAAATCCT-TTGGGTCATCTGTCATTCTTTC
** * * * * * * *
6576541 GAACAAGATTATAAGTCCTT-GCGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTT
639 GAGTAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTT
* * * * * *
6576605 GTAAAAAATGAG-AAGACAATTTTCAAAATTTCTCATCTAAGAATTTT-AGAAAATAAAAATTTT
704 TTAGAAAATGAGAAAG-CGATTTTCAAAGTTTCTCAT-TTAGTATTTTCAGAAAATAAAAATTTT
6576668 GAAAAGTA
767 GAAAAGTA
* * * * * *** *
6576676 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCAAAAATTGGTAAGTCCTTTGGGTC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * ** * * * * * * *
6576741 ATCAGTAAGTCATTC-AACATTATGATTAAATTCTTTGGGTCATCTGTCATTCTTTCGAGTAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * * * *
6576805 TGATAAGTCCTTCGGGCCATCTATAAGGCATTCGGGT-AAGATGTTTTAATATGAT-TTT-T-AG
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTC-GGTCAAGATGTTTTCATGTGATATTTGTGA-
** * * **
6576866 AAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAAATTTGAAAAG
194 AAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAG
* * * *
6576931 TAAGAAAGAGATTTCCAATGTTTCTTGCC-AGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAA
259 TAAGAAAGCGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCTT-AA
* * * * * * * * * *
6576995 -GCCATCAGTAAGTCTTTCGAGCACGATGA-TAAATCCT-TAGGGTCATGTTTCAGTCATTCTAG
322 TGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTAT-TGGTTATCTGTCAGACTTTCGAG
* * * * * ** * *
6577057 TAAGATGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGGAAAAATATTTTCATGTGATTTTAG
386 CAAGATTATAAGTCCTT-GGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGA-TTT-G
* *** * * * * * *
6577122 TGAAAAATGAGAAAATGTTTTTCAAAGTTTTTCATTT-AGTATTTTCAAAAAAAT-AAATTTTTT
448 TAAAAAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTT--AGAAAATGAAAATTTTG
* * * * * * *
6577185 AGAAGTAAGAAAGT-GTTCTTCAAAGTTTCTTACCTAGTATATTATTTCCATAATTAGTAAGTCC
511 AAAAGTAAGAAAGTGGTT-TCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCC
** * * * * * * *
6577249 TTAAGG-CGATTAGTAAGTCTTTCAAGCGTGATGATTAAATACTATT-GGTTATCT-TCCAGTCT
575 TTTGGGTC-ATCAGTAAGTCATTCAA-CATTATGATTAAATCCT-TTGGGTCATCTGT-CATTCT
* * * * * * * *
6577311 TTCGAGCAAGATTATAAGTCCTT-GGGCCATCTCTAAGACCTTTGGGTATGATGTTTTCATATGA
636 TTCGAGTAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGA
* * * * * *
6577375 TTTGTAAAAAATGAGAAAACGATTTTCAAAATTTCTCAATTAGGATTTTCAG-----AAAAA---
701 TTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTT
6577432 T-AAAAGT-
766 TGAAAAGTA
* * * **
6577439 ---------TTT-----G--AC--G--TGGTAGACTATTTCCAAAACTGGTAAGTCCTTTGAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * * * * *
6577484 ATCAATAAGTCTTCCGAGCATGATGATTAAATCCTTAAGGTCGTGTTTCAATCATTTGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * * * *
6577549 TAATAAGTCCTTCGAGCCATCTACAAGACCTTCGGTTAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
6577614 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
*
6577679 AGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* *
6577744 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGAATTTCGTGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6577809 TTATAAGTCCTTGGGCCATCTATAACACCTTTGGGTAGGATGTTTTCATATGATTTG-AAAAGAA
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAA-AA
*
6577873 TGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAG
455 TGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAG
* * *
6577938 AAAGTGGTTTCCAAAGTTTCTTACCAAGTATACTATTTCCAAAATTGGTAAGTCCGTTGGGTTAT
520 AAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCAT
* ** *
6578003 CAGTAAGTAATTCAACATTATGATTAAATCCTTCAGGTCATTTGTCATTCTTTCGAGTAAGATGA
585 CAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGA
*
6578068 TAAGTCCTTCGGGCCAACTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
650 TAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
* * * *
6578133 GAAAGCAATTTTCAAAGTTTCTCATTTAGTATTTTCGGAAAAATATAAATTTTGAAATGTA
715 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* *
6578194 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTTCTCCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6578259 ATCAGTACGTCTTTCGAGTACAATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
6578324 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
6578389 AATGAGAAAATGATTTTCAAAGTTTTTCA-TTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
*
6578453 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCG
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
6578518 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6578583 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
* *
6578648 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAAAAAATGAAAATTTTGAAGAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
* ** * * *
6578713 AAGTGGTTTCCAAAGTTTCCTACCAAGTAGACTATTTCCAAAATTGACAAGTTCTTTTGGTTATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
* * *
6578778 AGTAAGTCATTCAACATTATAATTAAATCCTTCGGGTCATCTGTCATTCTTTCTAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
* * * *
6578843 AAGTCCTTCAGGCCATCTATAAGACATACAGGCAGGATGTTTTAATAAGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
* *
6578908 AAAGCGATTTTCAAAGTTTCTCATTAAGTATTTTCATAAAA-ATAAAATTTTGAAAAGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATA-AAAATTTTGAAAAGTA
* *
6578967 TGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * * *
6579032 ATCAGTAAGTCTTTCGACCACGATGACTAAATCTTTATGGTCATGTTTCAGTCATTCGAGCAAGG
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * * * *
6579097 TGATAAGTACTTCGAGCCAT-GATTAAGTCCTTCGAG-CAAGATGTTTTCATGTGATATATGTGA
131 TGATAAGTTCTTAGGGCCATCTA-TAAGACCTTCG-GTCAAGATGTTTTCATGTGATATTTGTGA
** * ** *
6579160 AAAATGAGAAAACAATTTTCAGAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTAAAAAAT
194 AAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAG
* *
6579225 TAAGAAAGCGTTTTACAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGG
259 TAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATG
* * *
6579290 CCATTAGTAAGTCTTTCGAGCATGATGATTAAAAACTATTGGTCATCTGTCAGATTTTCGAGCAA
324 CCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAA
* *
6579355 GATTATAAGTCCTTGGGCCATCTATAAGACCTTTGTGTAGGAT-TCTTTCATATGATTTGTAAAC
389 GATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGT-TTTCATATGATTTGTAAAA
*
6579419 AATGACAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTA
453 AATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTA
*
6579484 AGAAAGTGGTTTCCAAAGTTTCCTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
518 AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
* *
6579549 ATCAGTAAGTCATTCAACTTTATGATTAACTCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGAT
583 ATCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGAT
*
6579614 GATAAGTCCTTCGGGCCATCTATAAGACATTCGTGCAGGATGTTTTAATATGATTTTTAGAAAAT
648 GATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAAT
* *
6579679 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTTAGAAAATAAAAAATTTGAAAAGTA
713 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
*
6579741 AGAAAGAGATTTCCAAAGTTTCTTGCAAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6579806 ATTAGTAAGTCTTTCGAGCACGATGATTAAATCCTTATGGTCATGTTTCAGTCATTCTAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
*
6579871 TGATAAGTTCTTAGGGCCATCTACAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
*
6579936 AATGAGAAAATGATTTTAAAAGTTTTTCATTTAGTATTTTCAAAAAA-ATAAATTTCTTGAAAAG
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATA-AAATTT-TTGAAAAG
* * *
6580000 TAAGGAAGCGTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAAGG
259 TAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATG
* *
6580065 CCATTAGTAAGTCTTTTGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGTGCAA
324 CCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAA
* *
6580130 GATTATAAGTCCTTGGGCCATATATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAA
389 GATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAA
* *
6580195 ATGAGAAAACAATTTTCAAAATTTATCATTTAAGAATTTTAGAAAATGAAAGTTTTGAAAAGTAA
454 ATGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAA
6580260 GAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCA
519 GAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCA
* * ** *
6580325 TCAGTAAGTAATTCAACATTATGCTTAAATCCTTCAGGTCATTTGTCATTCTTTCGAGTAAGATG
584 TCAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATG
* *
6580390 ATAAGTCTTTCGGGCCAAT-TATAAGACATTCAGGCAGGATGTTTTAATATGATTTTTAGAAAAT
649 ATAAGTCCTTCGGGCC-ATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAAT
6580454 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
713 GAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* **
6580517 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCATCAAGGT
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6580582 ATCAGTAAGTCTTTCGAGCACAATGATTAATTCCTTAGGGTCATGTTTCAGTCATCCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
6580647 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* *
6580712 AATGAGAAAATGATTTTCACAGTTTTTCATTTAGTATTTTCAAAAAATAAAAGTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
6580777 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* *
6580842 ACTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTATCAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6580907 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
* *
6580972 GAGAAAACGATTTTGAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
*
6581037 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
* * ** *
6581102 AATAAGTAATTCAACATTATGATTAAATCCTTCAGGTCATCTGTTATTCTTTCGAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
* ** * * *
6581167 AAGTCTTTTTGGCCAACTATAAGACATTCAGGCAGGATGCTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
6581232 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* **
6581292 AGAAAGAGATTTCCAAAGTTTCTTACCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGGA
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* *
6581357 ATCAGTAAGTCTTTCGAGCACAATGATTAATTCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
*
6581422 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTTAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
* *
6581487 AATGAGAAAATGATTTTCACAGTTTTTCATTTAGTATTTTCAAAAAATAAAAGTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
*
6581552 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCT
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* * *
6581617 ACTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTATTAGACTTTCGAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
* *
6581682 TTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTAATATGATTTGTAAAAAAA
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGT-AAAAAA
* * *
6581747 TGAGAAAACGATTTTGAAAATTTCTCATTTAAGACTTTTAGAAAATGAAAATTTTGAAAAGTAAG
455 TGAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAG
* *
6581812 AATGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTTGGTCAT
520 AAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCAT
* * *
6581877 CAGTAAGTCATTCAACATTATGATTAAATCCTTCGGGCCATCTGTCATTCTTTCGAGTAACATGA
585 CAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGA
** * *
6581942 TAAGTCCTTTAGGCCATCTATAAGACATACCGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
650 TAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
*
6582007 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCATAAAA-ATAAAATTTTGAAAAGTA
715 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATA-AAAATTTTGAAAAGTA
* * *
6582067 TGAAAGAGATTTCCAAAGTTTCTTGCCGGGTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * * *
6582132 ATCAGTAAGTCTTTCGACCACGATGATTAAATCTTTATGGTCATGTTTCAGTCATTCGAGCACGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
*
6582197 TGATAAG----T-----C--CT-T-CGA------G-CAAGATGTTTTCATGTGATATTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
** * *
6582242 AATGAGAAAACAATTTTCAATGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
* *
6582307 AGAAAGCGTTTTCCAAAGTTTCTTACGTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
** * * *
6582372 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGCCATTTGTCAGAGTTTCGAACAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6582437 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
*
6582502 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAAT-AAATATTTTGAAAAATAAG
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAA-ATTTTGAAAAGTAAG
*
6582566 AAAGTGGTTACCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCAT
520 AAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCAT
* * *
6582631 CAGTAAGACATTCAAAATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAAATGA
585 CAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGA
* * * *
6582696 TAAGGCCTTTGGGCCATCTATAAGACATTCGGACAAGATGTTTTAATATGATTTTTAGAAAATGA
650 TAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
**
6582761 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAAAATTGAAAAGTA
715 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* *
6582821 AGAAAGAGATTTCCAATGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
*
6582886 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCTAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * *
6582951 TGATAAGTTCTTAGGGCCATCTACAAGACTTTCGGTCAAGATGTTTTCTTGTGATATTTATGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
*
6583016 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATTAAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
*** *
6583081 AGAAAGCGAACTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAATGCC
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* *
6583146 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGTTTATCTGTCAGACTTTCTAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
* * *
6583211 TTATAAGTCCTTGGGCCATCTATAAGACTTTTGGGTAGGATGCTTTCATATGATTTGTTAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
* *
6583276 GTGAAAACAATTTTCAAAAATTCTCATTTAAGAATTTTAGAAAAT-AAAATTTTTGAAAAGTAAG
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAA-TTTTGAAAAGTAAG
* * *
6583340 AAAGTGGTTTCCAAAGTTCCTTACCAAGTAGACTATTTCCAAAATTAGTAAGTCCTTTAGGTCAT
520 AAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCAT
* * **
6583405 CAGTAAGTAATTCAAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGTAAGATGA
585 CAGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGA
* * *
6583470 TAAGTCCTTCGTGCCATCAATAAGACATTCGGGAAGGATGTTTTAATATGATTTTTAGAAAATGA
650 TAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGA
*
6583535 GAAAGCGATTTTCAAAGTTTCTCATTTTGTATTTTCAGAAAAATAAAAATTTTGAAAAGTA
715 GAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTA
* *
6583596 AG--AGAGATTTCAAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCT
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6583659 ATCAGTAAGCCTTTCGAGCACAATGATTAAATCCTTAGGGTCATGTTTCAGTCTTTCGAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* *
6583724 TGATAAATTCTTAGGG-CATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTTTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
*
6583788 AATGAGAAAATAATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAAT-AAATTTTTGAAAAGTA
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
* * *
6583852 AGAAAGCGTTTTCCAAAGTTTCTTGCCTAGTAGACTATTTCCAAAAATGGTAAGTCCTTAATGCT
261 AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
* *
6583917 ATTAGTAAGTCTTTTGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCTAGCAAGA
326 ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
*
6583982 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAAT
391 TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
6584047 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
456 GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
*
6584112 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTGGGTCATC
521 AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
**
6584177 AGTAAGTCATTCAACATTATGATTAACCCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
586 AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
6584242 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
651 AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
6584307 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAG--AA-AAAAATTTTGAAAAGTA
716 AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
* * *
6584363 AGAAAGAGATTTCTAAAGTTTCTTGCAAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAATCC
1 AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
* * *
6584428 ATTAGTAAGTCTTCCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCTAGCAAGA
66 ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
* * * *
6584493 TGATAAGTTCTTAGGGCCATCTACAAGACCTTCGGTCAAGAAGTTTTCTTGTGATTTTTGTGAAA
131 TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
*
6584558 AATGAGAAAATGATTTTCAAAGTTTTTCATTAAGTATTTTCACAAAAATAAAA-TTTTGAAAAGT
196 AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCA-AAAAATAAAATTTTTGAAAAGT
* *
6584622 AAGAAAGCGTTTTCAAAAGTTTCTTACCTAGTATACTATTTCCAAAATTGGTAAGTCCTTAATGC
260 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGC
*
6584687 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGCCAGACTTTCGAGCAAG
325 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAG
*
6584752 ATTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATAT
390 ATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATAT
6584804 TGTCGTAACC
Statistics
Matches: 17851, Mismatches: 1935, Indels: 1499
0.84 0.09 0.07
Matches are distributed among these distances:
673 239 0.01
674 18 0.00
675 5 0.00
676 1 0.00
677 4 0.00
679 12 0.00
680 1 0.00
682 6 0.00
683 10 0.00
685 6 0.00
686 1 0.00
687 4 0.00
688 1 0.00
690 4 0.00
691 2 0.00
692 12 0.00
693 29 0.00
694 2 0.00
695 10 0.00
697 5 0.00
699 9 0.00
700 4 0.00
701 7 0.00
702 2 0.00
703 1 0.00
704 1 0.00
705 2 0.00
706 3 0.00
708 4 0.00
709 3 0.00
710 1 0.00
712 10 0.00
713 34 0.00
714 13 0.00
715 30 0.00
716 28 0.00
717 4 0.00
718 2 0.00
719 3 0.00
721 2 0.00
722 8 0.00
723 7 0.00
725 7 0.00
726 8 0.00
727 2 0.00
729 5 0.00
730 1 0.00
731 3 0.00
732 30 0.00
733 32 0.00
734 11 0.00
735 35 0.00
736 6 0.00
738 1 0.00
739 3 0.00
740 3 0.00
742 4 0.00
743 104 0.01
744 268 0.02
745 19 0.00
746 179 0.01
747 45 0.00
748 5 0.00
749 10 0.00
750 4 0.00
751 5 0.00
752 63 0.00
753 519 0.03
754 825 0.05
755 714 0.04
756 37 0.00
757 3 0.00
758 5 0.00
759 2 0.00
760 2 0.00
761 4 0.00
762 6 0.00
763 10 0.00
764 13 0.00
765 23 0.00
766 363 0.02
767 31 0.00
768 34 0.00
769 254 0.01
770 129 0.01
771 703 0.04
772 436 0.02
773 2611 0.15
774 3433 0.19
775 4063 0.23
776 1058 0.06
777 217 0.01
778 53 0.00
779 8 0.00
780 9 0.00
781 6 0.00
782 3 0.00
783 6 0.00
784 5 0.00
785 19 0.00
786 1 0.00
787 6 0.00
788 2 0.00
789 9 0.00
790 35 0.00
791 20 0.00
792 10 0.00
793 3 0.00
794 6 0.00
799 1 0.00
800 5 0.00
801 1 0.00
802 1 0.00
803 4 0.00
804 4 0.00
805 1 0.00
806 3 0.00
807 2 0.00
808 3 0.00
809 2 0.00
810 1 0.00
811 5 0.00
812 4 0.00
813 5 0.00
814 7 0.00
815 34 0.00
816 8 0.00
817 3 0.00
818 2 0.00
819 1 0.00
821 3 0.00
822 6 0.00
823 8 0.00
825 1 0.00
827 6 0.00
828 13 0.00
829 8 0.00
830 5 0.00
831 3 0.00
832 11 0.00
833 3 0.00
835 14 0.00
836 3 0.00
837 13 0.00
838 6 0.00
839 8 0.00
840 3 0.00
841 2 0.00
844 4 0.00
845 2 0.00
846 7 0.00
847 6 0.00
848 4 0.00
849 7 0.00
850 1 0.00
851 4 0.00
852 4 0.00
853 3 0.00
854 2 0.00
855 9 0.00
856 21 0.00
857 22 0.00
858 6 0.00
859 8 0.00
860 5 0.00
861 1 0.00
863 2 0.00
864 2 0.00
865 16 0.00
866 2 0.00
867 8 0.00
868 5 0.00
869 7 0.00
870 6 0.00
871 10 0.00
872 4 0.00
873 2 0.00
874 3 0.00
875 6 0.00
876 2 0.00
877 1 0.00
878 9 0.00
879 15 0.00
880 4 0.00
881 7 0.00
882 5 0.00
883 12 0.00
884 8 0.00
885 8 0.00
886 1 0.00
887 8 0.00
888 6 0.00
889 3 0.00
891 3 0.00
894 14 0.00
895 4 0.00
896 2 0.00
897 7 0.00
898 5 0.00
899 2 0.00
900 1 0.00
901 13 0.00
902 6 0.00
903 4 0.00
907 1 0.00
908 4 0.00
909 1 0.00
910 4 0.00
911 9 0.00
912 3 0.00
913 5 0.00
914 2 0.00
915 13 0.00
916 5 0.00
917 3 0.00
918 10 0.00
919 20 0.00
920 28 0.00
921 13 0.00
922 2 0.00
923 4 0.00
925 4 0.00
928 1 0.00
930 5 0.00
931 2 0.00
932 1 0.00
934 1 0.00
935 4 0.00
936 6 0.00
937 6 0.00
938 2 0.00
939 2 0.00
940 27 0.00
941 8 0.00
943 1 0.00
944 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (774 bp):
AGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCC
ATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGA
TGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGTCAAGATGTTTTCATGTGATATTTGTGAAA
AATGAGAAAATGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTA
AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCC
ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTTATCTGTCAGACTTTCGAGCAAGA
TTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAAT
GAGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTAAGA
AAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATC
AGTAAGTCATTCAACATTATGATTAAATCCTTTGGGTCATCTGTCATTCTTTCGAGTAAGATGAT
AAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAG
AAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTA
Found at i:6567487 original size:21 final size:22
Alignment explanation
Indices: 6567461--6567515 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 22
6567451 GTTTCAGTCA
6567461 TTCGAGCAAGATG-ATAAGTAC
1 TTCGAGCAAGATGTATAAGTAC
* *
6567482 TTCGAGC--CATGTATAAGTCC
1 TTCGAGCAAGATGTATAAGTAC
6567502 TTCGAGCAAGATGT
1 TTCGAGCAAGATGT
6567516 TTTCATGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.11
20 14 0.50
21 7 0.25
22 4 0.14
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (22 bp):
TTCGAGCAAGATGTATAAGTAC
Found at i:6573197 original size:257 final size:257
Alignment explanation
Indices: 6572469--6574462 Score: 2026
Period size: 257 Copynumber: 7.7 Consensus size: 257
6572459 ATTCAAAATT
* ** * * *
6572469 ATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGTGCCATCT
1 ATGATTAAATCCTTAAGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCT
* * * * * * *
6572534 ATAAGACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTT
66 ATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTT
6572599 TCTCATTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCT
131 TCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCT
* * * **
6572664 TTCCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTAAGCTATCAGTAAGTCTTTCAAGCACA
195 TACCAAGTAGACTATTTCCAAAATTGGTAAGTCC-TTAAGCCATCAGTAAGTCTTTCGAGCATG
* * * * * *
6572728 ATGATTAAATCCTTAGGGACATGTTTCA-ATCTTTCGAGCAAGATGATAAATTCTTAGGGCCATC
1 ATGATTAAATCCTTAAGGTCATCTGTCAGA-CTTTCGAGCAAGATGATAAGTCCTTAGGGCCATC
* * * * *
6572792 TATAAGACC-TTCGGTCAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTCAA
65 TATAAGACCTTTGGGT-AGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAA
* ** * * *
6572856 AGTTTTTCATTTAGTATTTAAAAAAAATAAAATTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTT
127 AGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTT
* *
6572921 TCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATTAGTAAGTCTTTCGAGCA
192 TCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA-GCCATCAGTAAGTCTTTCGAGCA
6572986 TG
256 TG
* * * * *
6572988 ATGATTAAATAC-TATTGGTTATCTGTCAGACTTTCGTGCAAGATTATAAGTCCTT-GGGCCATC
1 ATGATTAAATCCTTA-AGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTAGGGCCATC
* * *
6573051 TATAAGACCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAATGAGAAAACAATTTTCAAAAT
65 TATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGT
* * * * * *
6573116 TTCTCATTTTAGAATTTT-AGAAAATGAAAGTTTGGAAAAGTAAGAAAGTGGTTTCCAAAGTTTC
130 TTCTCA-TTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTC
* ** * ** * *
6573180 TTACCAAGTACACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATCAGTAAGTAATTC-AACATT
194 TTACCAAGTAGACTATTTCCAAAATTGGTAAGTCC-TTAAGCCATCAGTAAGTCTTTCGAGCATG
* * ** * * *
6573244 ATGATTAAATCCTTCAGGTCATTTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGGGCCAACT
1 ATGATTAAATCCTTAAGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCT
* * * * * * * *
6573309 ATAAGACATTCGGGCAGGAGGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAG-T
66 ATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTT
* * *
6573373 TCTCATTTAGTATTTTCAGAAAAATAAAAATTATGAAAAGTATGAAAGAGATTTCCAAAGTTTCT
131 TCTCATTTAGTATTTTCAG-AAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCT
* * * * **
6573438 TGCCAGGTAGACTATTTCCAAATTTGGTAAGTCCTTCAAGCTATCAGTAAGTCTTTCGAGCACA
195 TACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTT-AAGCCATCAGTAAGTCTTTCGAGCATG
* * * * * * *
6573502 ATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGACCAAGATGATAAGTTCTTAGGGCCATCT
1 ATGATTAAATCCTTAAGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCT
** * * * * *
6573567 ATAAGACC-TTCAGTCAAGATGTTTTCATTTGATATTTGTGAAAAATGAGAAAATGATTTTCACA
66 ATAAGACCTTTGGGT-AGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAA
* * * * *
6573631 GTTTTTCATTTAGTGTTTTCAAAAAATAAAATTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTT
128 GTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTT
* *
6573696 CTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATTAGTAAGTCTTTCGAGCAT
193 CTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA-GCCATCAGTAAGTCTTTCGAGCAT
6573761 G
257 G
* * * *
6573762 ATGATTAAATAC-TATTGGTTATCTGTCAGACTTTCGAGCAAGATTATAAGTCCTT-GGGCCATC
1 ATGATTAAATCCTTA-AGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTAGGGCCATC
* * *
6573825 TCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTCTAAAAAATGAGAAAACGATTTTCAAAAT
65 TATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGT
* * * * *
6573890 TTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTAAGATAGTGGTTTCCAAAGTTTC
130 TTCTCATTT-AGTATTTTCAGAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTC
* ** * * * *
6573954 TTACCAAGTAGACTATTTCCAAAATTGGTAAGTTCTTTTGGTCATCAGTAAGTCATTC-AACATT
194 TTACCAAGTAGACTATTTCCAAAATTGGTAAG-TCCTTAAGCCATCAGTAAGTCTTTCGAGCATG
* * * *
6574018 ATGATTAAATCCTTCAGGTCATCTGTCATG-CTTTCGAGTAACATGATATGTCCTTTA-GGCCAT
1 ATGATTAAATCCTTAAGGTCATCTGTCA-GACTTTCGAGCAAGATGATAAGTCC-TTAGGGCCAT
** *** ** * * * * *
6574081 CTATAAGAGATACCGACATGATATTTTAATATGATTTTTAGAAAATGAGAAAGA-GATTTTCAAA
64 CTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAA-ACGATTTTCAAA
* * * * **
6574145 GTTTGTCATTTAGTATTTTCATAAAAATAAAAATTTTGAAAAGTATGAAAGAGATTTCGTAAGTT
128 GTTTCTCATTTAGTATTTTCA-GAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTT
* * * * * *
6574210 TCTTTCCAGGTAGACTATTTCCAAAATTGGAAAGTTCTTCAAGCCATCAGTAAGTCTTTCGACCC
192 TCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTT-AAGCCATCAGTAAGTCTTTCGAGCA
*
6574275 CG
256 TG
* * * * *** * * *
6574277 ATGATTAAATCTTTATGGTCATGTTTCAGTGATTCGAG-AACGATGATAAGTCCTTCGAGCCATG
1 ATGATTAAATCCTTAAGGTCATCTGTCAGACTTTCGAGCAA-GATGATAAGTCCTTAGGGCCATC
* * * * * *
6574341 TATAAGACCTTCCAGCG-A-GATGTTTTCATGTGATATTTGTGAGAAATGAGAAAACAATTTTCA
65 TATAAGACCTT--TGGGTAGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCA
** * * * * *
6574404 GTGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAATTAAGAAAGCGTTTTC
126 AAGTTTCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTC
6574463 GAGCATGATG
Statistics
Matches: 1417, Mismatches: 276, Indels: 83
0.80 0.16 0.05
Matches are distributed among these distances:
255 10 0.01
256 109 0.08
257 460 0.32
258 188 0.13
259 208 0.15
260 338 0.24
261 104 0.07
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (257 bp):
ATGATTAAATCCTTAAGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTAGGGCCATCT
ATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTT
TCTCATTTAGTATTTTCAGAAAATAAAAATTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTT
ACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGCCATCAGTAAGTCTTTCGAGCATG
Found at i:6575938 original size:257 final size:255
Alignment explanation
Indices: 6575414--6577443 Score: 2143
Period size: 257 Copynumber: 7.9 Consensus size: 255
6575404 TTTTGACGTG
* * * *
6575414 GTAGACTATTTCCAAAACTGGTAAGTCCTTTGAGCCATCAATAAGTCTTCCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCC-TTAAGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * * * *
6575479 AATCCTTAAGGTCGTGTTTCAGTCATTT-GAGCAAGATGATAAGTCCTTCGAGCCATCTACAAGA
65 AATACTTATGGTCATCTGTCAGTC-TTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * *
6575543 CCTTC-GGTCAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTCAAAGTTTTT
129 CCTTCGGGT-AAGATGTTTTCATATG--ATTTGT-AAAAATGAGAAAACGATTTTCAAAGTTTCT
*
6575607 CATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTAAGAAAGTGTTTTCCAAAGTTTCTTACC
190 CATTTAGTATTTTCAAAAAATAAAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACC
*
6575672 TA
254 AA
*
6575674 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAA-GCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * *
6575739 AATAC-TATTGGTTATCTGTCAGACTTTC-ATGCAAGATTATAAGTCCTT-GGGCCATCTATAAG
65 AATACTTA-TGGTCATCTGTCAGTCTTTCGA-GCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* * *
6575801 ACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAGAATGAGAAAACGATTTTCAAAATTTCTCA
128 ACCTTCGGGTAAGATGTTTTCATATGATTTGTAAA-AATGAGAAAACGATTTTCAAAGTTTCTCA
* * ** *
6575866 TTTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTAAGAAAGTGGGTTCCAAAGTTTCTTACAA
192 TTT-AGTATTTTCAAAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
6575930 A
255 A
* ** ** * * *
6575931 GTAGACTATTTCCAAAACTGGTAAGTCCTTTTGGTTATCAGTAAGTCATTC-AACATTATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCC-TTAAGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* ** * * *
6575995 AATCCTTCGGGTCATCTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCAGGCCATCTATAAGAC
65 AATACTTATGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGAC
* * * ** * * * *
6576060 ATACCGACAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCATT
130 CTTCGGGTAAGATGTTTTCATATGATTTGTA-AAAATGAGAAAACGATTTTCAAAGTTTCTCATT
* * * * **
6576125 TGGTATTTTCATAAAAATAAAAATTTTGAAAAGTATGAAAGAGATTTCCAAAGTTTCTTGCCGG
194 TAGTATTTTCA-AAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* * * *
6576189 GTAGACTATTTCCATAATTGGTAAGTCCTTCAAGCAATCAGTAAGTCTTTCGACCACGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AAGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * *
6576254 AAT-CTTTATGGTCATGTATCAGTCATTCGAGCAAGATGATAAGTCCTTCGAGCCATGTATAAGA
65 AATAC-TTATGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * * *
6576318 CCTTCGAGCAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAACAATTTTTAGAGTTTTTC
129 CCTTCGGGTAAGATGTTTTCATATG--ATTTGT-AAAAATGAGAAAACGATTTTCAAAGTTTCTC
* * * * * * *
6576383 ATTTAGTATTTTCAAAAAATAAATTTTTGAAAATTAACAAAGCGTTTTCCAAAGTTTCTTTCCTA
191 ATTTAGTATTTTCAAAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* *
6576448 GTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCCATTAGTAAGTCATTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAA-GCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * *
6576513 AATAC-TATTGGTCATTTGTCAGACTTTCGAACAAGATTATAAGTCCTT-GCGCCATCTATAAGA
65 AATACTTA-TGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * *
6576576 CCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAATGAGAAGACAATTTTCAAAATTTCTCAT
129 CCTTCGGGTAAGATGTTTTCATATGATTTGT-AAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * *
6576641 CTAAGAATTTT-AGAAAATAAAAATTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAA
193 -TTAGTATTTTCAAAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* ** * * * *
6576705 GTAGACTATTTCAAAAATTGGTAAGTCCTTTGGGTCATCAGTAAGTCATTC-AACATTATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCC-TTAAGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * *
6576769 AATTCTT-TGGGTCATCTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGGGCCATCTATAAGG
65 AATACTTAT-GGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * *
6576833 CATTCGGGTAAGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
129 CCTTCGGGTAAGATGTTTTCATATGATTTGTA-AAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * * * *
6576898 TTAGTATTTTCAGAAAATAAAAAATTTGAAAAGTAAGAAAGAGATTTCCAATGTTTCTTGCCAG
193 TTAGTATTTTCAAAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
*
6576962 GTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGCCATCAGTAAGTCTTTCGAGCACGATGA-TA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AAGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * * * * * *
6577026 AATCCTTAGGGTCATGTTTCAGTCATTCTAGTAAGATGATAAGTTCTTAGGGCCATCTATAAGAC
65 AATACTTATGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGAC
* * * * * * *
6577091 CTTCGGGAAAAATATTTTCATGTGATTTTAGTGAAAAATGAGAAAATGTTTTTCAAAGTTTTTCA
130 CTTCGGGTAAGATGTTTTCATATGA-TTT-GT-AAAAATGAGAAAACGATTTTCAAAGTTTCTCA
* * * * *
6577156 TTTAGTATTTTCAAAAAAATAAATTTTTTAGAAGTAAGAAAGTG-TTCTTCAAAGTTTCTTACCT
192 TTTAGTATTTTC-AAAAAATAAAATTTTGAAAAGTAAGAAAGTGATT-TCCAAAGTTTCTTACCA
6577220 A
255 A
* * * * * * * *
6577221 GTATATTATTTCCATAATTAGTAAGTCCTTAAGGCGATTAGTAAGTCTTTCAAGCGTGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAA-GCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * *
6577286 AATAC-TATTGGTTATCT-TCCAGTCTTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTCTAAG
65 AATACTTA-TGGTCATCTGT-CAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* * *
6577348 ACCTTTGGGTATGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAATTTCTCA
128 ACCTTCGGGTAAGATGTTTTCATATGATTTGT-AAAAATGAGAAAACGATTTTCAAAGTTTCTCA
* *
6577413 ATTAGGATTTTCAGAAAAATAAAAGTTTTGA
192 TTTAGTATTTTCA-AAAAATAAAA-TTTTGA
6577444 CGTGGTAGAC
Statistics
Matches: 1469, Mismatches: 255, Indels: 94
0.81 0.14 0.05
Matches are distributed among these distances:
255 1 0.00
256 156 0.11
257 562 0.38
258 159 0.11
259 407 0.28
260 140 0.10
261 43 0.03
262 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (255 bp):
GTAGACTATTTCCAAAATTGGTAAGTCCTTAAGCCATCAGTAAGTCTTTCGAGCATGATGATTAA
ATACTTATGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACC
TTCGGGTAAGATGTTTTCATATGATTTGTAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTA
GTATTTTCAAAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
Found at i:6576303 original size:21 final size:22
Alignment explanation
Indices: 6576267--6576333 Score: 77
Period size: 20 Copynumber: 3.2 Consensus size: 22
6576257 CTTTATGGTC
* *
6576267 ATGTATCAGTCATTCGAGCAAG
1 ATGTATAAGTCCTTCGAGCAAG
*
6576289 ATG-ATAAGTCCTTCGAGC--C
1 ATGTATAAGTCCTTCGAGCAAG
*
6576308 ATGTATAAGACCTTCGAGCAAG
1 ATGTATAAGTCCTTCGAGCAAG
6576330 ATGT
1 ATGT
6576334 TTTCATGTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
19 3 0.08
20 14 0.38
21 13 0.35
22 7 0.19
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (22 bp):
ATGTATAAGTCCTTCGAGCAAG
Found at i:6577975 original size:257 final size:257
Alignment explanation
Indices: 6577448--6584803 Score: 7306
Period size: 257 Copynumber: 28.6 Consensus size: 257
6577438 TTTTGACGTG
* * * *
6577448 GTAGACTATTTCCAAAACTGGTAAGTCCTTTGA-GCCATCAATAAGTCTTCCGAGCATGATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCC-TTAATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * *
6577512 AAATCCTTAAGGTCGTGTTTCA-ATCATTT-GAGCAAGATAATAAGTCCTTCGAGCCATCTACAA
65 AAATCCTTATGGTCATCTGTCAGA-C-TTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
* * * * * * *
6577575 GACCTTCGGTTAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTCAAAGTTTT
128 GACCTTTGGGTAGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTC
* *
6577640 TCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTAAGAAAGTGTTTTCCAAAGTTTCTTAC
191 TCATTTAGTATTTTCAGAAAATAAAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTAC
*
6577705 CTA
255 CAA
*
6577708 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * * *
6577773 AATAC-TATTGGTTATCTGTCAGAATTTCGTGCAAGATTATAAGTCCTT-GGGCCATCTATAACA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
*
6577836 CCTTTGGGTAGGATGTTTTCATATGATTTG-AAAAGAATGAGAAAACGATTTTCAAAATTTCTCA
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAA-AATGAGAAAACGATTTTCAAAGTTTCTCA
* *
6577900 TTTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCA
194 TTT-AGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
6577964 A
257 A
* ** ** ** * *
6577965 GTATACTATTTCCAAAATTGGTAAGTCCGTT-GGGTTATCAGTAAGTAATTC-AACATTATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCC-TTAATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* ** * *
6578028 AAATCCTTCA-GGTCATTTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGGGCCAACTATAAG
65 AAATCCTT-ATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* * * * * * * *
6578092 ACATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCAATTTTCAAAGTTTCTCA
129 ACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCA
* * * *
6578157 TTTAGTATTTTCGGAAAAATATAAATTTTGAAATGTAAGAAAGAGATTTCCAAAGTTTCTTGCCA
194 TTTAGTATTTTCAG-AAAATA-AAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
*
6578222 G
257 A
* * * * **
6578223 GTAGACTATTTCCAAAATTGGTAAGTTCTCCAA-GCCATCAGTACGTCTTTCGAGTACAATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCT-TAATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * *
6578287 AAATCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGATGATAAGTTCTTAGGGCCATCTATAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * *
6578352 CC-TTCGGTCAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTCAAAGTTTTT
130 CCTTTGGGT-AGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCT
* * *
6578416 CA-TTAGTATTTTCAAAAAATAAAATTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACC
192 CATTTAGTATTTTCAGAAAATAAAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACC
*
6578480 TA
256 AA
* *
6578482 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCGATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * *
6578547 AATAC-TATTGGTTATCTGTCAGACTTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTCTAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* *
6578610 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACAATTTTCAAAATTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * * *
6578675 TTAAGAATTTT-AAAAAATGAAAATTTTGAAGAGTAAGAAAGTGGTTTCCAAAGTTTCCTACCAA
195 TT-AGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
** * * ** * * * *
6578739 GTAGACTATTTCCAAAATTGACAAGTTCTT-TTGGTTATCAGTAAGTCATTC-AACATTATAATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAAT-GCCATCAGTAAGTCTTTCGAGCATGATGATT
** ** * * *
6578802 AAATCCTTCGGGTCATCTGTCATTCTTTCTAGTAAGATGATAAGTCCTTCAGGCCATCTATAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* *** * * * * * *
6578867 CATACAGGCAGGATGTTTTAATAAGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * * * *
6578932 TAAGTATTTTCATAAAAATAAAATTTTGAAAAGTATGAAAGAGATTTCCAAAGTTTCTTGCCAG
195 TTAGTATTTTCA-GAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* * * *
6578996 GTAGACTATTTCCATAATTGGTAAGTCCTTCAA-GCCATCAGTAAGTCTTTCGACCACGATGACT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * * * *
6579060 AAATCTTTATGGTCATGTTTCAGTCATTCGAGCAAGGTGATAAGTACTTCGAGCCAT-GATTAAG
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTA-TAAG
* * * * * * * * * *
6579124 TCCTTCGAGCAAGATGTTTTCATGTGATATATGTGAAAAATGAGAAAACAATTTTCAGAGTTTTT
129 ACCTTTGGGTAGGATGTTTTCATATGAT-T-TGTAAAAAATGAGAAAACGATTTTCAAAGTTTCT
* * * * * *
6579189 CATTTAGTATTTTCAAAAAATAAAATTTTAAAAAATTAAGAAAGCGTTTTACAAAGTTTCTTACC
192 CATTTAGTATTTTCAGAAAATAAAATTTT-GAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACC
*
6579254 TA
256 AA
* *
6579256 GTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
** * *
6579321 AAAAC-TATTGGTCATCTGTCAGATTTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTATAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * *
6579384 CCTTTGTGTAGGAT-TCTTTCATATGATTTGTAAACAATGACAAAACAATTTTCAAAATTTCTCA
130 CCTTTGGGTAGGATGT-TTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCA
* * *
6579448 TTTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCCTACCA
194 TTT-AGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
6579512 A
257 A
*** * * * * *
6579513 GTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATCAGTAAGTCATTC-AACTTTATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* ** *
6579577 ACTCCTT-TGGGTCATCTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGGGCCATCTATAAGA
66 AATCCTTAT-GGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * * * *
6579641 CATTCGTGCAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * *
6579706 TTAGTATTTTTAGAAAATAAAAAATTTGAAAAGTAAGAAAGAGATTTCCAAAGTTTCTT-GCAA
195 TTAGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* *
6579769 GGTAGACTATTTCCAAAATTGGTAAGTCCTTCAA-GCCATTAGTAAGTCTTTCGAGCACGATGAT
1 -GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGAT
* * * * * * * *
6579833 TAAATCCTTATGGTCATGTTTCAGTCATTCTAGCAAGATGATAAGTTCTTAGGGCCATCTACAAG
64 TAAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* * * * * * *
6579898 ACC-TTCGGTCAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTAAAAGTTTT
129 ACCTTTGGGT-AGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTC
* * * * *
6579962 TCATTTAGTATTTTCAAAAAAATAAATTTCTTGAAAAGTAAGGAAGCGTTTTCCAAAGTTTCTTA
191 TCATTTAGTATTTTC-AGAAAATAAAATT-TTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTA
*
6580027 CCTA
254 CCAA
* * * *
6580031 GTAAACTATTTCCAAAATTGGTAAGTCCTTAAGGCCATTAGTAAGTCTTTTGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * *
6580096 AATAC-TATTGGTTATCTGTCAGACTTTCGTGCAAGATTATAAGTCCTT-GGGCCATATATAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * *
6580159 CCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAATGAGAAAACAATTTTCAAAATTTATCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * *
6580224 TTAAGAATTTT-AGAAAATGAAAGTTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAA
195 TT-AGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
*** * ** * * *
6580288 GTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATCAGTAAGTAATTC-AACATTATGCTTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* ** * *
6580352 AATCCTTCA-GGTCATTTGTCATTCTTTCGAGTAAGATGATAAGTCTTTCGGGCCAAT-TATAAG
66 AATCCTT-ATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCC-ATCTATAAG
* ** * * * * *
6580415 ACATTCAGGCAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCA
129 ACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCA
* *
6580480 TTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTAAGAAAGAGATTTCCAAAGTTTCTTGCCA
194 TTTAGTATTTTCAG-AAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
*
6580545 G
257 A
* ** **
6580546 GTAGACTATTTCCAAAATTGGTAAGTCCATCAA-GGTATCAGTAAGTCTTTCGAGCACAATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCC-TTAATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * * * *
6580610 AATTCCTTAGGGTCATGTTTCAGTCATCCGAGCAAGATGATAAGTTCTTAGGGCCATCTATAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * * *
6580675 CC-TTCGGTCAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTCACAGTTTTT
130 CCTTTGGGT-AGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCT
* * *
6580739 CATTTAGTATTTTCAAAAAATAAAAGTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACC
192 CATTTAGTATTTTCAGAAAATAAAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACC
*
6580804 TA
256 AA
6580806 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCA-CTAGTAAGTCTTTCGAGCATGATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATC-AGTAAGTCTTTCGAGCATGATGATT
* * * * *
6580870 AAATAC-TATTGGTTATCTATCAGACTTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTCTAAG
65 AAATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* *
6580933 ACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTGAAAATTTCTCA
129 ACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCA
* *
6580998 TTTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCA
194 TTT-AGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
6581062 A
257 A
* * * ** * *
6581063 GTAGACTATTTCCAAAATTGGTAAGTCCTT-TTGGTCATCAATAAGTAATTC-AACATTATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAAT-GCCATCAGTAAGTCTTTCGAGCATGATGATT
* ** * * ** *
6581126 AAATCCTTCA-GGTCATCTGTTATTCTTTCGAGTAAGATGATAAGTCTTTTTGGCCAACTATAAG
65 AAATCCTT-ATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* ** * * * * * *
6581190 ACATTCAGGCAGGATGCTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCA
129 ACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCA
*
6581255 TTTAGTATTTTCAGAAAAATAAAAATTTTGAAAAGTAAGAAAGAGATTTCCAAAGTTTCTTACCA
194 TTTAGTATTTTCAG-AAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
*
6581320 G
257 A
** **
6581321 GTAGACTATTTCCAAAATTGGTAAGTCCTTCAA-GGAATCAGTAAGTCTTTCGAGCACAATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * * *
6581385 AATTCCTTAGGGTCATGTTTCAGTCATTCGAGCAAGATGATAAGTTCTTAGGGCCATCTATAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * * * *
6581450 CCTTCGGTTAAGATGTTTTCATGTGATATTTGTGAAAAATGAGAAAATGATTTTCACAGTTTTTC
130 CCTTTGGGTAGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTC
* * * *
6581515 ATTTAGTATTTTCAAAAAATAAAAGTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCT
193 ATTTAGTATTTTCAGAAAATAAAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
6581580 A
257 A
*
6581581 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCTA-CTAGTAAGTCTTTCGAGCATGATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATC-AGTAAGTCTTTCGAGCATGATGATT
* * * * * *
6581645 AAATAC-TATTGGTTATCTATTAGACTTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTCTAAG
65 AAATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* * *
6581708 ACCTTTGGGTAGGATGTTTTAATATGATTTGTAAAAAAATGAGAAAACGATTTTGAAAATTTCTC
129 ACCTTTGGGTAGGATGTTTTCATATGATTTGT-AAAAAATGAGAAAACGATTTTCAAAGTTTCTC
* *
6581773 ATTTAAG-ACTTTT-AGAAAATGAAAATTTTGAAAAGTAAGAATGTGGTTTCCAAAGTTTCTTAC
193 ATTT-AGTA-TTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTAC
6581836 CAA
255 CAA
* * * * *
6581839 GTAGACTATTTCCAAAATTGGTAAGTCCTT-TTGGTCATCAGTAAGTCATTC-AACATTATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAAT-GCCATCAGTAAGTCTTTCGAGCATGATGATT
** * ** * * **
6581902 AAATCCTTCGGGCCATCTGTCATTCTTTCGAGTAACATGATAAGTCCTTTAGGCCATCTATAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* *** * * * * *
6581967 CATACCGGCAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * * **
6582032 TTAGTATTTTCATAAAAATAAAATTTTGAAAAGTATGAAAGAGATTTCCAAAGTTTCTTGCCGG
195 TTAGTATTTTCA-GAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* * *
6582096 GTAGACTATTTCCATAATTGGTAAGTCCTTCAA-GCCATCAGTAAGTCTTTCGACCACGATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * *
6582160 AAATCTTTATGGTCATGTTTCAGTCATTCGAGCACGATGATAAGTCCTTC--G--AGC---AAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
** *** * * ** ** **** * *
6582218 TGTTTTCAT-GTGATATTTGTGA-AAAATGAG-AAAACAAT-TTTCAATGTTTTTC--A--TT-T
130 CCTTTGGGTAG-GATGTTT-TCATATGATTTGTAAAA-AATGAGAAAACGATTTTCAAAGTTTCT
* * *** * ** ** * * * *
6582274 -A-GTA-TTTTCAAAAAATAA-AATTTTTGAAAA-TTAAGAAAGCGTTTTCCAAAGTTTCTTACG
192 CATTTAGTATTTTCAGAA-AATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACC
*
6582334 TA
256 AA
* *
6582336 GTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * * *
6582401 AATAC-TATTGGCCATTTGTCAGAGTTTCGAACAAGATTATAAGTCCTT-GGGCCATCTATAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * *
6582464 CCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAATGAGAAAACAATTTTCAAAATTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * *
6582529 TTAAGAATTTT-AGAAAATAAATATTTTGAAAAATAAGAAAGTGGTTACCAAAGTTTCTTACCAA
195 TT-AGTATTTTCAGAAAATAAA-ATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
*** * * * ** *
6582593 GTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTCATCAGTAAGACATTC-AAAATTATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
** * * * *
6582657 AATCCTT-TGGGTCATCTGTCATTCTTTCGAGTAAAATGATAAGGCCTTTGGGCCATCTATAAGA
66 AATCCTTAT-GGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * ** * * * * *
6582721 CATTCGGACAAGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
** * * * *
6582786 TTAGTATTTTCAGAAAATAAAAAAATTGAAAAGTAAGAAAGAGATTTCCAATGTTTCTTGCCAG
195 TTAGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* *
6582850 GTAGACTATTTCCAAAATTGGTAAGTCCTTCAA-GCTATCAGTAAGTCTTTCGAGCACGATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * * * *
6582914 AAATCCTTAGGGTCATGTTTCAGTCATTCTAGCAAGATGATAAGTTCTTAGGGCCATCTACAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * *
6582979 -CTTTCGGTCAAGATGTTTTCTTGTGATATT-TATGAAAAATGAGAAAATGATTTTCAAAGTTTT
130 CCTTTGGGT-AGGATGTTTTCATATGAT-TTGTA--AAAAATGAGAAAACGATTTTCAAAGTTTC
* * * **
6583042 TCATTTAGTATTTTCAAAAAATTAAATTTTTGAAAAGTAAGAAAGCGAACTCCAAAGTTTCTTAC
191 TCATTTAGTATTTTCAGAAAA-TAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTAC
*
6583107 CTA
255 CAA
* *
6583110 GTAAACTATTTCCAAAATTGGTAAGTCCTTAATGCCATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * *
6583175 AATAC-TATTGTTTATCTGTCAGACTTTCTAGCAAGATTATAAGTCCTT-GGGCCATCTATAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * **
6583238 CTTTTGGGTAGGATGCTTTCATATGATTTGTTAAAAATGTGAAAACAATTTTCAAAAATTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * *
6583303 TTAAGAATTTT-AGAAAATAAAATTTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTCCTTACCAA
195 TT-AGTATTTTCAGAAAATAAAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* * * * ** ** *
6583367 GTAGACTATTTCCAAAATTAGTAAGTCCTTTAGGTCATCAGTAAGTAATTC-AAAATTATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
** * * *
6583431 AATCCTTCA-GGTCATCTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGTGCCATCAATAAGA
66 AATCCTT-ATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * * *
6583495 CATTCGGGAAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * * * *
6583560 TTTGTATTTTCAGAAAAATAAAAATTTTGAAAAGTAAG--AGAGATTTCAAAAGTTTCTTGCCAG
195 TTAGTATTTTCAG-AAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* * **
6583623 GTAGACTATTTCCAAAATTGGTAAGTCCTTCAA-GCTATCAGTAAGCCTTTCGAGCACAATGATT
1 GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGATT
* * * * * * *
6583687 AAATCCTTAGGGTCATGTTTCAGTCTTTCGAGCAAGATGATAAATTCTTAGGG-CATCTATAAGA
65 AAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * ** *
6583751 CC-TTCGGTCAAGATGTTTTCATGTGATATTTTTGAAAAATGAGAAAATAATTTTCAAAGTTTTT
130 CCTTTGGGT-AGGATGTTTTCATATG--ATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCT
* * * * * *
6583815 CATTTAGTATTTTCAAAAAATAAATTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTGCCT
192 CATTTAGTATTTTCAGAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCA
6583880 A
257 A
* * * *
6583881 GTAGACTATTTCCAAAAATGGTAAGTCCTTAATGCTATTAGTAAGTCTTTTGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * *
6583946 AATAC-TATTGGTTATCTGTCAGACTTTCTAGCAAGATTATAAGTCCTT-GGGCCATCTATAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * *
6584009 CCTTTGGGTAGGATGCTTTCATATGATTTGTAAAAAATGAGAAAACAATTTTCAAAATTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* *
6584074 TTAAGAATTTT-AGAAAATGAAAATTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAA
195 TT-AGTATTTTCAGAAAAT-AAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* *** * * * *
6584138 GTAGACTATTTCCAAAATTTGTAAGTCCTTTGGGTCATCAGTAAGTCATTC-AACATTATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
** ** *
6584202 ACCCCTT-TGGGTCATCTGTCATTCTTTCGAGTAAGATGATAAGTCCTTCGGGCCATCTATAAGA
66 AATCCTTAT-GGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
* * * * * * *
6584266 CATTCGGGCAGGATGTTTTAATATGATTTTTAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCAT
130 CCTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCAT
* * *
6584331 TTAGTATTTTCAG-AAA-AAAATTTTGAAAAGTAAGAAAGAGATTTCTAAAGTTTCTT-GCAA
195 TTAGTATTTTCAGAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
* * *
6584391 GGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAT-CCATTAGTAAGTCTTCCGAGCACGATGAT
1 -GTAGACTATTTCCAAAATTGGTAAGTCCTT-AATGCCATCAGTAAGTCTTTCGAGCATGATGAT
* * * * * * * * *
6584455 TAAATCCTTAGGGTCATGTTTCAGTCATTCTAGCAAGATGATAAGTTCTTAGGGCCATCTACAAG
64 TAAATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAG
* * * * * * * *
6584520 ACC-TTCGGTCAAGAAGTTTTCTTGTGATTTTTGTGAAAAATGAGAAAATGATTTTCAAAGTTTT
129 ACCTTTGGGT-AGGATGTTTTCATATGA--TTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTC
* * * * *
6584584 TCATTAAGTATTTTCACAAAAATAAAATTTTGAAAAGTAAGAAAGCGTTTTCAAAAGTTTCTTAC
191 TCATTTAGTATTTTCA-GAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTAC
*
6584649 CTA
255 CAA
* *
6584652 GTATACTATTTCCAAAATTGGTAAGTCCTTAATGCCATTAGTAAGTCTTTCGAGCATGATGATTA
1 GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
* * * * *
6584717 AATAC-TATTGGTTATCTGCCAGACTTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTCTAAGA
66 AATCCTTA-TGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGA
6584780 CCTTTGGGTAGGATGTTTTCATAT
130 CCTTTGGGTAGGATGTTTTCATAT
6584804 TGTCGTAACC
Statistics
Matches: 5798, Mismatches: 1094, Indels: 409
0.79 0.15 0.06
Matches are distributed among these distances:
239 4 0.00
240 116 0.02
241 12 0.00
242 6 0.00
243 4 0.00
244 1 0.00
245 3 0.00
246 22 0.00
247 12 0.00
248 1 0.00
249 1 0.00
250 11 0.00
251 19 0.00
252 3 0.00
253 4 0.00
254 87 0.02
255 86 0.01
256 630 0.11
257 1898 0.33
258 1065 0.18
259 633 0.11
260 916 0.16
261 262 0.05
262 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (257 bp):
GTAGACTATTTCCAAAATTGGTAAGTCCTTAATGCCATCAGTAAGTCTTTCGAGCATGATGATTA
AATCCTTATGGTCATCTGTCAGACTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGAC
CTTTGGGTAGGATGTTTTCATATGATTTGTAAAAAATGAGAAAACGATTTTCAAAGTTTCTCATT
TAGTATTTTCAGAAAATAAAATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAA
Found at i:6579112 original size:21 final size:21
Alignment explanation
Indices: 6579086--6579136 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
6579076 GTTTCAGTCA
6579086 TTCGAGCAAGGTGA-TAAGTAC
1 TTCGAGCAA-GTGATTAAGTAC
* *
6579107 TTCGAGCCA-TGATTAAGTCC
1 TTCGAGCAAGTGATTAAGTAC
6579127 TTCGAGCAAG
1 TTCGAGCAAG
6579137 ATGTTTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 8 0.32
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (21 bp):
TTCGAGCAAGTGATTAAGTAC
Found at i:6586258 original size:25 final size:25
Alignment explanation
Indices: 6586225--6586272 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6586215 TAGTATGTTG
*
6586225 CTCTCTGTTTTCGGTCTCTCTCTGT
1 CTCTCTGTTCTCGGTCTCTCTCTGT
* *
6586250 CTCTGTGTTCTCTGTCTCTCTCT
1 CTCTCTGTTCTCGGTCTCTCTCT
6586273 CTATTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.00, C:0.33, G:0.15, T:0.52
Consensus pattern (25 bp):
CTCTCTGTTCTCGGTCTCTCTCTGT
Found at i:6586679 original size:11 final size:11
Alignment explanation
Indices: 6586653--6586686 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
6586643 TGTAATTAAT
*
6586653 TATTTATATATG
1 TATTTA-ATATA
6586665 TATTTAATATA
1 TATTTAATATA
6586676 TATTTAATATA
1 TATTTAATATA
6586687 ATAATAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (11 bp):
TATTTAATATA
Done.