Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 62
Found at i:6812999 original size:60 final size:59
Alignment explanation
Indices: 6812917--6813059 Score: 150
Period size: 60 Copynumber: 2.4 Consensus size: 59
6812907 CATACGTCTT
* * ** *
6812917 CAAATTATGAC-TCATTTTAAATTGA-TCTTTAAA-TTATTAAATGTTTTAATTTCATCC
1 CAAATTATGACATCATTCTAAATTGAGTCTTAAAACTT-TTAAACATTTCAATTTCATCC
* * *
6812974 CAAAATTATGAGTATCATTCTAAATT-AGTCTTAAAACTTTTGAACATTTCATTTTCATCC
1 C-AAATTATGA-CATCATTCTAAATTGAGTCTTAAAACTTTTAAACATTTCAATTTCATCC
6813034 CAAATTATGACATACATTCTAAATTG
1 CAAATTATGACAT-CATTCTAAATTG
6813060 GTCCCCAGAC
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
57 1 0.01
58 11 0.16
59 21 0.30
60 35 0.50
61 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.43
Consensus pattern (59 bp):
CAAATTATGACATCATTCTAAATTGAGTCTTAAAACTTTTAAACATTTCAATTTCATCC
Found at i:6813072 original size:59 final size:60
Alignment explanation
Indices: 6812964--6813097 Score: 155
Period size: 60 Copynumber: 2.2 Consensus size: 60
6812954 TAAATGTTTT
* ** *
6812964 AATTTCATCCCAAAATTATGAGTATCATTCTAAATTAGTCTTAAAAC-TTTTGAACATTTC
1 AATTTCATCCC-AAATTATGAATATCATTCTAAATTAGTCCCAAAACTTTTTGAACATTCC
* * * *
6813024 ATTTTCATCCCAAATTATGACATA-CATTCTAAATTGGTCCCCAGACTTTTTGAACATTCC
1 AATTTCATCCCAAATTATGA-ATATCATTCTAAATTAGTCCCAAAACTTTTTGAACATTCC
*
6813084 AATGTCATCCCAAA
1 AATTTCATCCCAAA
6813098 CTATATGTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
59 26 0.42
60 36 0.58
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (60 bp):
AATTTCATCCCAAATTATGAATATCATTCTAAATTAGTCCCAAAACTTTTTGAACATTCC
Found at i:6814115 original size:105 final size:105
Alignment explanation
Indices: 6813928--6814121 Score: 237
Period size: 105 Copynumber: 1.8 Consensus size: 105
6813918 GAGGGTATCA
* * *
6813928 ATACTCAACCCTTGGGTATCAATACTCATCTCGAGTATCGATACCAAATTTAAGCTCGACGTTCC
1 ATACTCAACCCTTGGGTATCAATACTCACCTCAAGTACCGATACCAAATTTAAGCTCGACGTTCC
** *
6813993 AATAAATTTCATGGGTATCGATACCCCCATACGAGTATTG
66 AATAAATACCATCGGTATCGATACCCCCATACGAGTATTG
* * * ** * *
6814033 ATACTCACCCCTTGGGTATCAATACTCACCTTAAGTACCGATATCATTTTTAA-CTTCGATGTTT
1 ATACTCAACCCTTGGGTATCAATACTCACCTCAAGTACCGATACCAAATTTAAGC-TCGACGTTC
* *
6814097 GAATAAATACCCTCGGTATCGATAC
65 CAATAAATACCATCGGTATCGATAC
6814122 TTACAAGAAA
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
104 1 0.01
105 72 0.99
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (105 bp):
ATACTCAACCCTTGGGTATCAATACTCACCTCAAGTACCGATACCAAATTTAAGCTCGACGTTCC
AATAAATACCATCGGTATCGATACCCCCATACGAGTATTG
Found at i:6816971 original size:24 final size:25
Alignment explanation
Indices: 6816915--6816971 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
6816905 TATTTTAAAT
* *
6816915 AGTATTTTAGTTTATCTTTGTTTTA
1 AGTATTTTAGTTTATCATAGTTTTA
*
6816940 TGTATTTTAGTTTAT-ATAGTTTTA
1 AGTATTTTAGTTTATCATAGTTTTA
*
6816964 AGTGTTTT
1 AGTATTTT
6816972 TATTAGGATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.21, C:0.02, G:0.14, T:0.63
Consensus pattern (25 bp):
AGTATTTTAGTTTATCATAGTTTTA
Found at i:6817637 original size:18 final size:18
Alignment explanation
Indices: 6817614--6817658 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
6817604 CTTTAGATTA
*
6817614 TTTATTTAATTATTTTCT
1 TTTATTTAATTATTATCT
6817632 TTTATTTAATTATTATCT
1 TTTATTTAATTATTATCT
6817650 TTTATTTAA
1 TTTATTTAA
6817659 AAACAACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:6823217 original size:21 final size:21
Alignment explanation
Indices: 6823184--6823246 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
6823174 GAGGCAACCC
6823184 ATTTC-GTTCTATTTTTATTTT
1 ATTTCAGTT-TATTTTTATTTT
*
6823205 ATTTCAGTTTATTTTCATTTT
1 ATTTCAGTTTATTTTTATTTT
*
6823226 ATTTCATTTTATTTTTATTTT
1 ATTTCAGTTTATTTTTATTTT
6823247 TAGCAAACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 35 0.92
22 3 0.08
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.71
Consensus pattern (21 bp):
ATTTCAGTTTATTTTTATTTT
Found at i:6823245 original size:11 final size:11
Alignment explanation
Indices: 6823193--6823246 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
6823183 CATTTCGTTC
*
6823193 TATTTTTATTT
1 TATTTTCATTT
*
6823204 TA-TTTCAGTT
1 TATTTTCATTT
6823214 TATTTTCATTT
1 TATTTTCATTT
6823225 TA-TTTCATTT
1 TATTTTCATTT
*
6823235 TATTTTTATTT
1 TATTTTCATTT
6823246 T
1 T
6823247 TAGCAAACTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 18 0.49
11 19 0.51
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.74
Consensus pattern (11 bp):
TATTTTCATTT
Found at i:6823285 original size:14 final size:14
Alignment explanation
Indices: 6823255--6823304 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
6823245 TTTAGCAAAC
*
6823255 TTTATTTCATTCT-A
1 TTTATTTAATT-TAA
6823269 TTTATTTAATTTAA
1 TTTATTTAATTTAA
*
6823283 TTTAATTTAATTTAT
1 TTT-ATTTAATTTAA
6823298 TTTATTT
1 TTTATTT
6823305 TTTCTGAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 1 0.03
14 18 0.56
15 13 0.41
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTATTTAATTTAA
Found at i:6823304 original size:5 final size:5
Alignment explanation
Indices: 6823268--6823301 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
6823258 ATTTCATTCT
*
6823268 ATTT- ATTTA ATTTA ATTTA ATTTA ATTTA TTTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
6823302 TTTTTTCTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
ATTTA
Found at i:6823305 original size:5 final size:5
Alignment explanation
Indices: 6823196--6823246 Score: 57
Period size: 5 Copynumber: 9.8 Consensus size: 5
6823186 TTCGTTCTAT
* * *
6823196 TTTTA TTTTA TTTCA GTTTA TTTTCA TTTTA TTTCA TTTTA TTTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA -TTTTA TTTT
6823247 TAGCAAACTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
5 28 0.74
6 10 0.26
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:6827895 original size:18 final size:18
Alignment explanation
Indices: 6827872--6827913 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6827862 CTTTAGATAA
*
6827872 TTTATTTAATTATTTTCT
1 TTTATTTAATTATTATCT
* *
6827890 TTTATTTAGTTCTTATCT
1 TTTATTTAATTATTATCT
6827908 TTTATT
1 TTTATT
6827914 AAAAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:6828038 original size:35 final size:35
Alignment explanation
Indices: 6827969--6828038 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
6827959 TTTATTAATT
* *
6827969 TATTTTTCCCTTTTTATTTATTATTACTTATTTTAG
1 TATTTTT-CCTTTTTAATTATAATTACTTATTTTAG
*
6828005 TATTTTT-CTTTTTAAATTATAATTATTTATTTTA
1 TATTTTTCCTTTTT-AATTATAATTACTTATTTTA
6828039 TTTCAAACCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 6 0.20
35 17 0.57
36 7 0.23
ACGTcount: A:0.24, C:0.07, G:0.01, T:0.67
Consensus pattern (35 bp):
TATTTTTCCTTTTTAATTATAATTACTTATTTTAG
Found at i:6828670 original size:2 final size:2
Alignment explanation
Indices: 6828663--6828694 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6828653 CACTTGAGAC
6828663 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6828695 GGCTTACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:6831919 original size:63 final size:62
Alignment explanation
Indices: 6831812--6831934 Score: 151
Period size: 63 Copynumber: 2.0 Consensus size: 62
6831802 CCCTAAGGGA
* * *
6831812 ACATCTTAGGCCTGAGAGCCTACCCAAGATAGATTTCGGTGCCGTGGGGCCGACCTAAGAAC
1 ACATCTTAGGCCTGAGAGCCTACCCAAGATAGATCTCGGTGCCGTAGAGCCGACCTAAGAAC
* * *
6831874 ACATCTTAGGGCTGCAGAGCCTACCCGAGA-ATGATCTCAGG-GCCGTAGAGCCTACCTAAGA
1 ACATCTTAGGCCTG-AGAGCCTACCCAAGATA-GATCTC-GGTGCCGTAGAGCCGACCTAAGA
6831935 GTCACATTAG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
62 14 0.27
63 36 0.69
64 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.27, T:0.19
Consensus pattern (62 bp):
ACATCTTAGGCCTGAGAGCCTACCCAAGATAGATCTCGGTGCCGTAGAGCCGACCTAAGAAC
Found at i:6832840 original size:29 final size:29
Alignment explanation
Indices: 6832799--6832966 Score: 225
Period size: 29 Copynumber: 5.9 Consensus size: 29
6832789 ATAGTCTAAA
*
6832799 TTCAAAA-A-TTCCCAAAATGTCACCTTT
1 TTCAAAATATTTCCCAGAATGTCACCTTT
* *
6832826 TTCAAAATAATTCCCAGAATGTCACATTT
1 TTCAAAATATTTCCCAGAATGTCACCTTT
*
6832855 TTCAAAATATTTCCCCGAATGTCACCTTT
1 TTCAAAATATTTCCCAGAATGTCACCTTT
** *
6832884 TTCAAAATATTTCTTAGAATGTCACATTT
1 TTCAAAATATTTCCCAGAATGTCACCTTT
* * *
6832913 TT-AAAATATTTCCCAAAATATCACCTAT
1 TTCAAAATATTTCCCAGAATGTCACCTTT
6832941 TTCAAAATATTTCCCAGAATGTCACC
1 TTCAAAATATTTCCCAGAATGTCACC
6832967 GGGTCGGGTC
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 7 0.06
28 23 0.19
29 91 0.75
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (29 bp):
TTCAAAATATTTCCCAGAATGTCACCTTT
Found at i:6832946 original size:57 final size:58
Alignment explanation
Indices: 6832799--6832965 Score: 250
Period size: 57 Copynumber: 2.9 Consensus size: 58
6832789 ATAGTCTAAA
*
6832799 TTCAAAA-A-TTCCCAAAATGTCACCTTTTTCAAAATAATTCCCAGAATGTCACATTT
1 TTCAAAATATTTCCCAAAATGTCACCTTTTTCAAAATATTTCCCAGAATGTCACATTT
** **
6832855 TTCAAAATATTTCCCCGAATGTCACCTTTTTCAAAATATTTCTTAGAATGTCACATTT
1 TTCAAAATATTTCCCAAAATGTCACCTTTTTCAAAATATTTCCCAGAATGTCACATTT
* *
6832913 TT-AAAATATTTCCCAAAATATCACCTATTTCAAAATATTTCCCAGAATGTCAC
1 TTCAAAATATTTCCCAAAATGTCACCTTTTTCAAAATATTTCCCAGAATGTCAC
6832966 CGGGTCGGGT
Statistics
Matches: 98, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
56 7 0.07
57 46 0.47
58 45 0.46
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.37
Consensus pattern (58 bp):
TTCAAAATATTTCCCAAAATGTCACCTTTTTCAAAATATTTCCCAGAATGTCACATTT
Found at i:6832986 original size:17 final size:17
Alignment explanation
Indices: 6832961--6832995 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
6832951 TTCCCAGAAT
*
6832961 GTCACCGGGTCGGGTCG
1 GTCAACGGGTCGGGTCG
6832978 GTCAACGGGTCGGGTCG
1 GTCAACGGGTCGGGTCG
6832995 G
1 G
6832996 GTCAGATCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.09, C:0.26, G:0.49, T:0.17
Consensus pattern (17 bp):
GTCAACGGGTCGGGTCG
Found at i:6839037 original size:82 final size:84
Alignment explanation
Indices: 6838919--6839112 Score: 230
Period size: 82 Copynumber: 2.3 Consensus size: 84
6838909 AAATTCCAAA
* * * * *
6838919 AATGTCACTTTTTTCCAAAATAATTCCCATAATGTCATATTTTTCAAAATAATTCCCAGAATGTC
1 AATGTCACATTTTT--AAAATATTTCCCAGAATGTCACATTTTTCAAAATAATTCCCAAAATGTC
*
6838984 ACCTTTTTCAAAATA-TT-AG
64 AACTTTTTCAAAATATTTCAG
* * * *
6839003 AATGTCACATTTTTAAAATATTTCCTAGAATGTCACCTTTTTCAAAATATTTCTCAAAATGTCAA
1 AATGTCACATTTTTAAAATATTTCCCAGAATGTCACATTTTTCAAAATAATTCCCAAAATGTCAA
6839068 CTTTTTCAAAATATTTCCCAG
66 CTTTTTCAAAATATTT--CAG
*
6839089 AATGTCACATATTTCAAAATATTT
1 AATGTCACAT-TTTTAAAATATTT
6839113 GACAGAATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
82 55 0.59
83 2 0.02
84 13 0.14
86 12 0.13
87 12 0.13
ACGTcount: A:0.36, C:0.18, G:0.06, T:0.40
Consensus pattern (84 bp):
AATGTCACATTTTTAAAATATTTCCCAGAATGTCACATTTTTCAAAATAATTCCCAAAATGTCAA
CTTTTTCAAAATATTTCAG
Found at i:6839120 original size:29 final size:29
Alignment explanation
Indices: 6838919--6839112 Score: 229
Period size: 29 Copynumber: 6.8 Consensus size: 29
6838909 AAATTCCAAA
* * *
6838919 AATGTCACTTTTTTCCAAAATAATTCCCAT
1 AATGTCACATTTTT-CAAAATATTTCCCAG
* *
6838949 AATGTCATATTTTTCAAAATAATTCCCAG
1 AATGTCACATTTTTCAAAATATTTCCCAG
*
6838978 AATGTCACCTTTTTCAAAATA-TT---AG
1 AATGTCACATTTTTCAAAATATTTCCCAG
*
6839003 AATGTCACATTTTT-AAAATATTTCCTAG
1 AATGTCACATTTTTCAAAATATTTCCCAG
* * *
6839031 AATGTCACCTTTTTCAAAATATTTCTCAA
1 AATGTCACATTTTTCAAAATATTTCCCAG
6839060 AATGTCA-ACTTTTTCAAAATATTTCCCAG
1 AATGTCACA-TTTTTCAAAATATTTCCCAG
*
6839089 AATGTCACATATTTCAAAATATTT
1 AATGTCACATTTTTCAAAATATTT
6839113 GACAGAATAT
Statistics
Matches: 143, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
24 6 0.04
25 17 0.12
28 17 0.12
29 90 0.63
30 13 0.09
ACGTcount: A:0.36, C:0.18, G:0.06, T:0.40
Consensus pattern (29 bp):
AATGTCACATTTTTCAAAATATTTCCCAG
Found at i:6843053 original size:48 final size:49
Alignment explanation
Indices: 6842990--6843113 Score: 155
Period size: 48 Copynumber: 2.6 Consensus size: 49
6842980 TTTATAGAAC
* * * *
6842990 GAGTTTGATATCTGTGTGATGGTGGTGCTATTATATGATACTTG-GCA-T
1 GAGTCTGACATCTGTGTGATGGTGGTGCCATTATATGATA-ATGAGCACT
**
6843038 GAGTCTGACATCTGTGTGACAGTGGTGCCATTATATGATAATGAGCACT
1 GAGTCTGACATCTGTGTGATGGTGGTGCCATTATATGATAATGAGCACT
*
6843087 -AGTCTGACGTCTGTGTGATGGTGGTGC
1 GAGTCTGACATCTGTGTGATGGTGGTGC
6843114 GTTGGTACTT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 2 0.03
48 62 0.95
49 1 0.02
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (49 bp):
GAGTCTGACATCTGTGTGATGGTGGTGCCATTATATGATAATGAGCACT
Found at i:6843554 original size:14 final size:14
Alignment explanation
Indices: 6843544--6843575 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
6843534 TTATTATTGT
6843544 TATTATTTTATTTA
1 TATTATTTTATTTA
*
6843558 TATTATTTTATTAA
1 TATTATTTTATTTA
6843572 TATT
1 TATT
6843576 GATAGAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTATTTTATTTA
Found at i:6845358 original size:21 final size:21
Alignment explanation
Indices: 6845332--6845371 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
6845322 TGACACTAGG
*
6845332 TACCTAGCTAGCTAGCTACAC
1 TACCTAGCTAGCTACCTACAC
6845353 TACCTAGCTAGCTACCTAC
1 TACCTAGCTAGCTACCTAC
6845372 CTAGCTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.35, G:0.12, T:0.25
Consensus pattern (21 bp):
TACCTAGCTAGCTACCTACAC
Found at i:6845361 original size:17 final size:16
Alignment explanation
Indices: 6845327--6845378 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
6845317 TGGAGTGACA
* *
6845327 CTAGGTACCTAGCTAG
1 CTAGCTACCTACCTAG
6845343 CTAGCTACACTACCTAG
1 CTAGCTAC-CTACCTAG
6845360 CTAGCTACCTACCTAG
1 CTAGCTACCTACCTAG
6845376 CTA
1 CTA
6845379 TGTGGCCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
16 18 0.55
17 15 0.45
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (16 bp):
CTAGCTACCTACCTAG
Found at i:6845369 original size:12 final size:12
Alignment explanation
Indices: 6845327--6845378 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
6845317 TGGAGTGACA
*
6845327 CTAGGTACCTAG
1 CTAGCTACCTAG
*
6845339 CTAGCTAGCTA-
1 CTAGCTACCTAG
6845350 C-A-CTACCTAG
1 CTAGCTACCTAG
*
6845360 CTAGCTACCTAC
1 CTAGCTACCTAG
6845372 CTAGCTA
1 CTAGCTA
6845379 TGTGGCCTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 6 0.18
10 2 0.06
11 2 0.06
12 23 0.70
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (12 bp):
CTAGCTACCTAG
Found at i:6845413 original size:20 final size:20
Alignment explanation
Indices: 6845390--6845433 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
6845380 GTGGCCTAGT
6845390 AAGCTACCTAGGAACCTACC
1 AAGCTACCTAGGAACCTACC
6845410 AAGCTACCTAGGAACCTACC
1 AAGCTACCTAGGAACCTACC
6845430 AAGC
1 AAGC
6845434 ATGCTACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.14
Consensus pattern (20 bp):
AAGCTACCTAGGAACCTACC
Found at i:6848178 original size:23 final size:23
Alignment explanation
Indices: 6848148--6848192 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
6848138 CATCTTTCAC
6848148 ACTAGGACTATTATGGTTGAGAA
1 ACTAGGACTATTATGGTTGAGAA
6848171 ACTAGGACTATTATGGTTGAGA
1 ACTAGGACTATTATGGTTGAGA
6848193 TAGTTGTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (23 bp):
ACTAGGACTATTATGGTTGAGAA
Found at i:6852713 original size:38 final size:38
Alignment explanation
Indices: 6852670--6852744 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
6852660 GATAAATTTC
6852670 AATGTTATATG-AAAATGTCTAAATTATGTATTTAGTTA
1 AATGTTATA-GAAAAATGTCTAAATTATGTATTTAGTTA
6852708 AATGTTATAGAAAAATGTCTAAATTATGTATTTAGTT
1 AATGTTATAGAAAAATGTCTAAATTATGTATTTAGTT
6852745 TACGATAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 1 0.03
38 35 0.97
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.44
Consensus pattern (38 bp):
AATGTTATAGAAAAATGTCTAAATTATGTATTTAGTTA
Found at i:6853300 original size:28 final size:28
Alignment explanation
Indices: 6853269--6853323 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
6853259 TTTTGAATAT
6853269 ATTTTAAATAAATATAATTAAATTATTA
1 ATTTTAAATAAATATAATTAAATTATTA
* * *
6853297 ATTTTAAATCATTATTATTAAATTATT
1 ATTTTAAATAAATATAATTAAATTATT
6853324 TCAAGATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (28 bp):
ATTTTAAATAAATATAATTAAATTATTA
Found at i:6853303 original size:14 final size:14
Alignment explanation
Indices: 6853285--6853323 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
6853275 AATAAATATA
6853285 ATTAAATTATTAATT
1 ATTAAATTATT-ATT
*
6853300 -TTAAATCATTATT
1 ATTAAATTATTATT
6853313 ATTAAATTATT
1 ATTAAATTATT
6853324 TCAAGATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 3 0.14
14 18 0.86
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (14 bp):
ATTAAATTATTATT
Found at i:6853384 original size:21 final size:21
Alignment explanation
Indices: 6853355--6853394 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6853345 TTAAAATTAC
*
6853355 TAAAAACTATTAAATTTATAA
1 TAAAAACTATTAAAGTTATAA
*
6853376 TAAATACTATTAAAGTTAT
1 TAAAAACTATTAAAGTTAT
6853395 TTTTAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (21 bp):
TAAAAACTATTAAAGTTATAA
Found at i:6853405 original size:31 final size:32
Alignment explanation
Indices: 6853370--6853436 Score: 109
Period size: 31 Copynumber: 2.1 Consensus size: 32
6853360 ACTATTAAAT
6853370 TTATAATAAATACTATTAAAGTTATTTTTA-A
1 TTATAATAAATACTATTAAAGTTATTTTTACA
* *
6853401 TTATAATTAATATTATTAAAGTTATTTTTACA
1 TTATAATAAATACTATTAAAGTTATTTTTACA
6853433 TTAT
1 TTAT
6853437 TTGAATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (32 bp):
TTATAATAAATACTATTAAAGTTATTTTTACA
Found at i:6853444 original size:31 final size:30
Alignment explanation
Indices: 6853378--6853444 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
6853368 ATTTATAATA
*
6853378 AATACTATTAAAGTTATTTTTAATTATAATT
1 AATATTATTAAAGTTATTTTTAATTAT-ATT
6853409 AATATTATTAAAGTTATTTTTACATTAT-TT
1 AATATTATTAAAGTTATTTTTA-ATTATATT
6853439 GAATAT
1 -AATAT
6853445 ATTCATATGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
30 2 0.06
31 26 0.79
32 5 0.15
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.52
Consensus pattern (30 bp):
AATATTATTAAAGTTATTTTTAATTATATT
Found at i:6871577 original size:11 final size:11
Alignment explanation
Indices: 6871538--6871569 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
6871528 AAAAGAAGGG
6871538 AAAAAAACATT
1 AAAAAAACATT
6871549 AAAAAAACATT
1 AAAAAAACATT
6871560 AAAAAAACAT
1 AAAAAAACAT
6871570 GAGAAAAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAACATT
Found at i:6879389 original size:27 final size:25
Alignment explanation
Indices: 6879349--6879426 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 25
6879339 AATTTGTTTC
6879349 TTTAA-CATTAATCGAACCGAAATT
1 TTTAACCATTAATCGAACCGAAATT
* * *
6879373 TTAATGACCGTTAATCGAACCAAAATT
1 TT--TAACCATTAATCGAACCGAAATT
6879400 ATTTAACCATTAATCGAACCGAAATT
1 -TTTAACCATTAATCGAACCGAAATT
6879426 T
1 T
6879427 ATTTGAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
24 2 0.05
25 1 0.02
26 22 0.50
27 17 0.39
28 2 0.05
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (25 bp):
TTTAACCATTAATCGAACCGAAATT
Found at i:6879438 original size:27 final size:27
Alignment explanation
Indices: 6879352--6879438 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
6879342 TTGTTTCTTT
*
6879352 AACATTAATCGAACCGAAATTT-TAATG
1 AACATTAATCGAACCGAAATTTAT-TTG
* * *
6879379 ACCGTTAATCGAACC-AAAATTATTT-
1 AACATTAATCGAACCGAAATTTATTTG
6879404 AACCATTAATCGAACCGAAATTTATTTG
1 AA-CATTAATCGAACCGAAATTTATTTG
*
6879432 AAAATTA
1 AACATTA
6879439 TTAACCGAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
25 1 0.02
26 18 0.38
27 27 0.56
28 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (27 bp):
AACATTAATCGAACCGAAATTTATTTG
Found at i:6879560 original size:67 final size:65
Alignment explanation
Indices: 6879401--6879563 Score: 215
Period size: 64 Copynumber: 2.5 Consensus size: 65
6879391 ACCAAAATTA
*
6879401 TTTAACCATTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAATAAAATAAATTATTTTTC
1 TTTAACCATTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACAAAATAAATTATTTTTC
* * * * *
6879466 TTTAACCGTTAATCGAA-CTAAATTTATTTTAAAATTATTAATCGAACCAAATCAACCAATT-TT
1 TTTAACCATTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACAAAAT--A--AATTATT
6879529 TTTC
62 TTTC
6879533 TTTAACCATTAATCGAACCGAAA-TTATTTGA
1 TTTAACCATTAATCGAACCGAAATTTATTTGA
6879564 CCGTTAATCG
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
64 30 0.36
65 16 0.19
66 1 0.01
67 29 0.35
68 8 0.10
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (65 bp):
TTTAACCATTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACAAAATAAATTATTTTTC
Found at i:6879704 original size:80 final size:81
Alignment explanation
Indices: 6879608--6879816 Score: 375
Period size: 81 Copynumber: 2.6 Consensus size: 81
6879598 TAATCGAATA
*
6879608 AAATAAATTTGGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAA-AT
1 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAACAT
6879672 TCGGTTAATAATTTTC
66 TCGGTTAATAATTTTC
6879688 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAACAT
1 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAACAT
*
6879753 TTGGTTAATAATTTTC
66 TCGGTTAATAATTTTC
* *
6879769 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAA
1 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAA
6879817 CAAGTGTTGA
Statistics
Matches: 124, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
80 61 0.49
81 63 0.51
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (81 bp):
AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAACAT
TCGGTTAATAATTTTC
Found at i:6879803 original size:26 final size:27
Alignment explanation
Indices: 6879608--6879817 Score: 139
Period size: 26 Copynumber: 7.9 Consensus size: 27
6879598 TAATCGAATA
*
6879608 AAATAAATTTGGGTTCGATTAACGGTC
1 AAATAAATTTCGGTTCGATTAACGGTC
* * *
6879635 AAAT-AATTTCGATTCGATTAATGGTTA
1 AAATAAATTTCGGTTCGATTAACGG-TC
* * * ***
6879662 AAGAAAAAATTCGGTT--AATAATTTTC
1 AA-ATAAATTTCGGTTCGATTAACGGTC
6879688 AAATAAATTTCGGTTCGATTAACGGTC
1 AAATAAATTTCGGTTCGATTAACGGTC
* * *
6879715 AAAT-AATTTCGATTCGATTAATGGTTAA
1 AAATAAATTTCGGTTCGATTAACGG-T-C
* * ***
6879743 AGAAAAACATTT-GGTT--AATAATTTTC
1 A-AATAA-ATTTCGGTTCGATTAACGGTC
6879769 AAATAAATTTCGGTTCGATTAACGGTC
1 AAATAAATTTCGGTTCGATTAACGGTC
*
6879796 AAAT-AATTTTGGTTCGATTAAC
1 AAATAAATTTCGGTTCGATTAAC
6879818 AAGTGTTGAG
Statistics
Matches: 138, Mismatches: 32, Indels: 27
0.70 0.16 0.14
Matches are distributed among these distances:
24 4 0.03
25 19 0.14
26 56 0.41
27 34 0.25
28 7 0.05
29 10 0.07
30 4 0.03
31 4 0.03
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (27 bp):
AAATAAATTTCGGTTCGATTAACGGTC
Found at i:6897249 original size:54 final size:54
Alignment explanation
Indices: 6897150--6897442 Score: 381
Period size: 54 Copynumber: 5.4 Consensus size: 54
6897140 TCGATACGGT
* * * * * * * *
6897150 AATTCACAAACTCATTATGAATTACGTGGGGTGCACACATGGTGTCAATAC-AGA
1 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGA-A
* * * * * *
6897204 AATTTATAAACTAATTATGAATTTCTTAGGTTTCAGACATAGTGTCAATATGGA
1 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAA
** *
6897258 AATTCATAAAAAAATTATGAATTTCTTAGGTTGCACACATAATGCCAATACGAA
1 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAA
*
6897312 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAATGCCAATACGAA
1 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAA
* * *
6897366 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACAGATAGTGCCGATATGAA
1 AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAA
6897420 AATTCATAAACTAATTATGAATT
1 AATTCATAAACTAATTATGAATT
6897443 AAATGGTTTA
Statistics
Matches: 211, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 211 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (54 bp):
AATTCATAAACTAATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAA
Found at i:6897486 original size:18 final size:18
Alignment explanation
Indices: 6897463--6897501 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
6897453 TAGAGAGCAT
6897463 AATTAAA-GTTTATATATA
1 AATTAAAGGTTTATAT-TA
6897481 AATTAAATGGTTTATATTA
1 AATTAAA-GGTTTATATTA
6897500 AA
1 AA
6897502 ATGGTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 4 0.21
20 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (18 bp):
AATTAAAGGTTTATATTA
Found at i:6899275 original size:47 final size:47
Alignment explanation
Indices: 6899220--6899359 Score: 235
Period size: 47 Copynumber: 3.0 Consensus size: 47
6899210 GAACAACAAG
*
6899220 ACGCATATCCTCAAGAGTATCAGGCACCCCAGGTATACCATACAAAA
1 ACGCATATCCTTAAGAGTATCAGGCACCCCAGGTATACCATACAAAA
* *
6899267 TCGCATATCCTTAAGAGTATCAGGCACCCCAGGTATGCCATACAAAA
1 ACGCATATCCTTAAGAGTATCAGGCACCCCAGGTATACCATACAAAA
* *
6899314 ACGCATATCCTTAAGAGTATCACGCACCTCAGGTATACCATACAAA
1 ACGCATATCCTTAAGAGTATCAGGCACCCCAGGTATACCATACAAA
6899360 TATGAAGGAT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.36, C:0.29, G:0.15, T:0.20
Consensus pattern (47 bp):
ACGCATATCCTTAAGAGTATCAGGCACCCCAGGTATACCATACAAAA
Found at i:6901352 original size:365 final size:357
Alignment explanation
Indices: 6900524--6901369 Score: 1031
Period size: 359 Copynumber: 2.3 Consensus size: 357
6900514 AAAGGTTCAG
* * * * * *
6900524 TTGTTATGGATTGATGTTTTAGTCTTTTCAAATTAACCAGAATAGTTTGCTCGCTTAGTCCAGTG
1 TTGTTATGGACTGATGTTTTCGTCTTCTCAGATTGACCAGAATAGTTTCCTCGCTTAGTCCAGTG
* * *
6900589 GAAACATCCCCAATATGCTACTCCAGCTCCATCACTTCCTACAAAATAAACAACAAGAGCTTTTA
66 CAAACATCCCCAATTTGCT-CTCCAGCTCC-TCAGTTCCTACAAAATAAACAACAAGAGCTTTTA
* * *
6900654 AAACCCTAAGTAATTTCCATTGAACTCAAAATGTTTGAGTGTTACCTCATAAGACATGTTATCGG
129 AAACCCTAAGTAATTCCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGACATGTTATCGA
* **
6900719 CATCAAGGCACATATCATCAATAATATCAAGATCCTCAGGTATGCCATACAAATATTAAGGATTG
194 CATCAAGGCACATATCATCAATAATATCAAGATCCTCAGGCATGCCATACAAATAGGAAGGATTG
** * *
6900784 ATCACATCCTGCCATATATTTTATGTTGGTTGAAAATCAGTGTTAAACATTGATAATAATAGCAT
259 ATCACATCCTGCCATATATTCCACGTTGGTTGAAAATCAGTGTTAAACATTGATAAGAATAGCAT
* * *
6900849 TGATTTCCTTAGTATTCAAACATTGATATTCTAG
324 TGATTTCCTTAGTATTCAAACATTAATATTCCAA
* * * * *
6900883 TTGTTATGGACTGATGTTTTCATCTTCTTAGATTGGCGAGAATAGTTTCCTCGCTTAGTCCAGTT
1 TTGTTATGGACTGATGTTTTCGTCTTCTCAGATTGACCAGAATAGTTTCCTCGCTTAGTCCAGTG
* * * *
6900948 CAAACATCCCCAATTTTCTCCTCCAGCTCCAAT-AGTTCCTACAAAATAAGCGACACGAGCTTTT
66 CAAACATCCCCAATTTGCT-CTCCAGCTCC--TCAGTTCCTACAAAATAAACAACAAGAGCTTTT
* * * *
6901012 AAAACTCTAAGTAATTCCCATTGGACTCAAAATATTTGAGTGTTACCTCATAAGATATGTTATCT
128 AAAACCCTAAGTAATTCCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGACATGTTATCG
* ** * * * * *
6901077 ACATCTAGGTGCATATCCTCGATAATAT-TAGTATCCTCAGGCATGCCTTACAACTAGGAAGGAT
193 ACATCAAGGCACATATCATCAATAATATCAAG-ATCCTCAGGCATGCCATACAAATAGGAAGGAT
*
6901141 TGATTACAATCACATCCTGCCTTATATTCCACGTTGG-TGCAAAA-CTAGTGTTAAACATTTG-T
257 TG------ATCACATCCTGCCATATATTCCACGTTGGTTG-AAAATC-AGTGTTAAACA-TTGAT
*
6901203 AAGAATAGCATTGATTTCCTTCA-TATTTAAACATTAATATTCCAA
313 AAGAATAGCATTGATTTCCTT-AGTATTCAAACATTAATATTCCAA
* * *
6901248 TTGTTATGGACTGATATTTTCGTCTTCTCAGATTGACCATAATAGTTTCCTCGCTTAGTCCCGTG
1 TTGTTATGGACTGATGTTTTCGTCTTCTCAGATTGACCAGAATAGTTTCCTCGCTTAGTCCAGTG
* *
6901313 CAAACATCCCCAATTTGCTCTTCAAGCTCCTGCAGTTCCTACAAAATAATCAA-AAGA
66 CAAACATCCCCAATTTGCTC-TCCAGCTCCT-CAGTTCCTACAAAATAAACAACAAGA
6901370 AAATGATCAG
Statistics
Matches: 413, Mismatches: 59, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
358 2 0.00
359 217 0.53
360 2 0.00
363 1 0.00
364 7 0.02
365 180 0.44
366 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (357 bp):
TTGTTATGGACTGATGTTTTCGTCTTCTCAGATTGACCAGAATAGTTTCCTCGCTTAGTCCAGTG
CAAACATCCCCAATTTGCTCTCCAGCTCCTCAGTTCCTACAAAATAAACAACAAGAGCTTTTAAA
ACCCTAAGTAATTCCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGACATGTTATCGACA
TCAAGGCACATATCATCAATAATATCAAGATCCTCAGGCATGCCATACAAATAGGAAGGATTGAT
CACATCCTGCCATATATTCCACGTTGGTTGAAAATCAGTGTTAAACATTGATAAGAATAGCATTG
ATTTCCTTAGTATTCAAACATTAATATTCCAA
Found at i:6902087 original size:79 final size:79
Alignment explanation
Indices: 6901933--6902098 Score: 205
Period size: 79 Copynumber: 2.1 Consensus size: 79
6901923 AGTATATTAA
* * *
6901933 ATAATAT--TATTTATTTTATTTAAAATTTATGATGAATAATTTCTGAAAATTTTATTAAATAGT
1 ATAATATCATATTTATTGTATTTAAAATTTATAATGAATAATTTCTGAAAATTTTATTAAAAAGT
* *
6901996 AGTAAATGATTTAT
66 AATAAATGATTTAC
** *
6902010 ATAATATCATATTTATTGTATTTAGTATTTATAATGAATAATTTTTGAAAATTTTA-TAAAAAGA
1 ATAATATCATATTTATTGTATTTAAAATTTATAATGAATAATTTCTGAAAATTTTATTAAAAAG-
*
6902074 TAA-ATAATTATTTAC
65 TAATA-AATGATTTAC
6902089 ATAATATCAT
1 ATAATATCAT
6902099 TCAAATATTA
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
77 7 0.09
78 7 0.09
79 62 0.82
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (79 bp):
ATAATATCATATTTATTGTATTTAAAATTTATAATGAATAATTTCTGAAAATTTTATTAAAAAGT
AATAAATGATTTAC
Found at i:6905086 original size:14 final size:14
Alignment explanation
Indices: 6905059--6905095 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
6905049 AAACATTTGG
6905059 TACCCAAA-TTAAA
1 TACCCAAATTTAAA
6905072 TACCCAAATTTAAA
1 TACCCAAATTTAAA
*
6905086 TATCCAAATT
1 TACCCAAATT
6905096 GGTATGTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
TACCCAAATTTAAA
Found at i:6906453 original size:33 final size:34
Alignment explanation
Indices: 6906383--6906453 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
6906373 GATTACATTT
* **
6906383 TTTTAATTTTGGTAATTTTCTTTATGTTATTTTA
1 TTTTAATATTGGTAATTTTCTTTATGTTATTAAA
*
6906417 TTTTAATATT-GTAATTTT-TTCTATTTTATTAAA
1 TTTTAATATTGGTAATTTTCTT-TATGTTATTAAA
6906450 TTTT
1 TTTT
6906454 GGTAACGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 2 0.06
33 21 0.66
34 9 0.28
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.68
Consensus pattern (34 bp):
TTTTAATATTGGTAATTTTCTTTATGTTATTAAA
Found at i:6906587 original size:21 final size:19
Alignment explanation
Indices: 6906549--6906597 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 19
6906539 TCGGGTAAAA
*
6906549 TTCTAACCTTTTTTACTAAT
1 TTCTAA-CTTTTTTACTAAC
6906569 TTCTAACTTTTAATTACTAAC
1 TTCTAACTTTT--TTACTAAC
6906590 TTCTAACT
1 TTCTAACT
6906598 AGCTAACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 6 0.23
21 15 0.58
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (19 bp):
TTCTAACTTTTTTACTAAC
Found at i:6906588 original size:14 final size:14
Alignment explanation
Indices: 6906564--6906607 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
6906554 ACCTTTTTTA
*
6906564 CTAATTTCTAACTT
1 CTAATTACTAACTT
*
6906578 TTAATTACTAACTT
1 CTAATTACTAACTT
*
6906592 CTAACTAGCTAACTT
1 CTAATTA-CTAACTT
6906607 C
1 C
6906608 AAAAAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (14 bp):
CTAATTACTAACTT
Found at i:6906771 original size:29 final size:27
Alignment explanation
Indices: 6906727--6906792 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 27
6906717 TTTATTTGAT
6906727 TTTATATTTATGTTATTTACATTTCTGCCC
1 TTTA-ATTTATGTTATTTA-ATTTCTG-CC
* * *
6906757 TTTAATTTCTGTTATTTAATTTTTGTC
1 TTTAATTTATGTTATTTAATTTCTGCC
6906784 TTTAATTTA
1 TTTAATTTA
6906793 ATGTGCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 9 0.28
28 6 0.19
29 13 0.41
30 4 0.12
ACGTcount: A:0.21, C:0.11, G:0.06, T:0.62
Consensus pattern (27 bp):
TTTAATTTATGTTATTTAATTTCTGCC
Found at i:6906789 original size:13 final size:14
Alignment explanation
Indices: 6906727--6906791 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
6906717 TTTATTTGAT
* *
6906727 TTTATATTTATGTTA
1 TTTA-ATTTCTGTTC
**
6906742 TTTACATTTCTGCCC
1 TTTA-ATTTCTGTTC
*
6906757 TTTAATTTCTGTTA
1 TTTAATTTCTGTTC
*
6906771 TTTAATTTTTG-TC
1 TTTAATTTCTGTTC
6906784 TTTAATTT
1 TTTAATTT
6906792 AATGTGCTTT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
13 9 0.22
14 17 0.43
15 14 0.35
ACGTcount: A:0.20, C:0.11, G:0.06, T:0.63
Consensus pattern (14 bp):
TTTAATTTCTGTTC
Found at i:6908125 original size:31 final size:31
Alignment explanation
Indices: 6908087--6908170 Score: 150
Period size: 31 Copynumber: 2.7 Consensus size: 31
6908077 TGTGTTTAAA
*
6908087 AGGGATGGATCAAAGGATGTTGATTGTCTAT
1 AGGGATGGATCAAGGGATGTTGATTGTCTAT
6908118 AGGGATGGATCAAGGGATGTTGATTGTCTAT
1 AGGGATGGATCAAGGGATGTTGATTGTCTAT
*
6908149 AGGGATGAATCAAGGGATGTTG
1 AGGGATGGATCAAGGGATGTTG
6908171 GGGTACAGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.29, C:0.06, G:0.36, T:0.30
Consensus pattern (31 bp):
AGGGATGGATCAAGGGATGTTGATTGTCTAT
Found at i:6908154 original size:19 final size:19
Alignment explanation
Indices: 6908101--6908155 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
6908091 ATGGATCAAA
6908101 GGATGTTGATTGTCTATAG
1 GGATGTTGATTGTCTATAG
6908120 GGATG--GA---TC-A-AG
1 GGATGTTGATTGTCTATAG
6908132 GGATGTTGATTGTCTATAG
1 GGATGTTGATTGTCTATAG
6908151 GGATG
1 GGATG
6908156 AATCAAGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
12 7 0.24
13 1 0.03
14 4 0.14
17 4 0.14
18 1 0.03
19 12 0.41
ACGTcount: A:0.24, C:0.05, G:0.36, T:0.35
Consensus pattern (19 bp):
GGATGTTGATTGTCTATAG
Found at i:6908644 original size:49 final size:49
Alignment explanation
Indices: 6908585--6908683 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
6908575 TGTGAATCAC
*
6908585 TGAAACGACAGGAAAAATAAATGACGATTGTGCATGAATGTACTTTAGG
1 TGAAACGACAGGAAAAATAAATGACGATTGTGCATGAAAGTACTTTAGG
* *
6908634 TGAAAGGACAGGAAAAGTAAATGACGATTGTGCATGAAAGTACTTTAGG
1 TGAAACGACAGGAAAAATAAATGACGATTGTGCATGAAAGTACTTTAGG
6908683 T
1 T
6908684 TACAAAAAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.24
Consensus pattern (49 bp):
TGAAACGACAGGAAAAATAAATGACGATTGTGCATGAAAGTACTTTAGG
Found at i:6920517 original size:19 final size:19
Alignment explanation
Indices: 6920493--6920534 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6920483 CCCAAGCCAT
6920493 TGACTGAGCCATTGACCGA
1 TGACTGAGCCATTGACCGA
** *
6920512 TGACTGAGCTGTTGACCGT
1 TGACTGAGCCATTGACCGA
6920531 TGAC
1 TGAC
6920535 CACCGTTCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (19 bp):
TGACTGAGCCATTGACCGA
Found at i:6924383 original size:59 final size:58
Alignment explanation
Indices: 6924208--6924388 Score: 154
Period size: 60 Copynumber: 3.1 Consensus size: 58
6924198 ACTCTCATTT
* * *
6924208 TAAATTGGTCCCT-AA-ATTATTAAACATTTTAATTTTATCCCTAAACTTTAAGTATCATTC
1 TAAATTAGTCCCTAAACATT-TTAAACATTTTAATTTCATCCC-AAACTAT-AGTAT-ATTC
* * ** * *
6924268 TAAACTAGT-CCTCAAAC-TTTTGATTATTTTATTTTCATCCCCAAACTATGAATATATTC
1 TAAATTAGTCCCT-AAACATTTTAAACATTTTAATTTCAT-CCCAAACTAT-AGTATATTC
** *
6924327 TAAATTAGTCCCTAAACATTTTAAACATTCCAATTTCATCCCAAACTATATGTATATAC
1 TAAATTAGTCCCTAAACATTTTAAACATTTTAATTTCATCCCAAACTATA-GTATATTC
6924386 TAA
1 TAA
6924389 TCTCATTCCT
Statistics
Matches: 95, Mismatches: 19, Indels: 15
0.74 0.15 0.12
Matches are distributed among these distances:
58 1 0.01
59 38 0.40
60 49 0.52
61 7 0.07
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.40
Consensus pattern (58 bp):
TAAATTAGTCCCTAAACATTTTAAACATTTTAATTTCATCCCAAACTATAGTATATTC
Found at i:6924776 original size:3 final size:3
Alignment explanation
Indices: 6924768--6924798 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
6924758 GTTATCTATA
6924768 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
6924799 CCGTGCAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:6926198 original size:46 final size:46
Alignment explanation
Indices: 6926145--6926375 Score: 390
Period size: 46 Copynumber: 5.0 Consensus size: 46
6926135 TAAAACAAAT
6926145 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
6926191 CCATAAATGAATTGCATGAAAGGATGCATTAAGGCATGAAAGGATT
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* * *
6926237 CCATAAATGAAATGCATGAAAGGATGCACTAAGGCATAAAAGGAAG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
6926283 CCATAAATGAAATGCATGAAAGGATGAATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
6926329 CCATAAATGAAATACATGAAAGGATGCATTAAGGCATGGAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
6926375 C
1 C
6926376 ATTAAGGCAT
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 171 1.00
ACGTcount: A:0.44, C:0.11, G:0.25, T:0.19
Consensus pattern (46 bp):
CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:6926366 original size:66 final size:66
Alignment explanation
Indices: 6926158--6926439 Score: 255
Period size: 66 Copynumber: 4.2 Consensus size: 66
6926148 TAAATGAAAT
* * *
6926158 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAATTGCATGAAAGGATGCATTAA
1 GCATGAAAGGATGAATTAAGGCATGAAAGGATGCCATAAATGAAATACATGAAAGGATGCATTAA
6926223 G
66 G
* * * ** * * * *
6926224 GCATGAAAGGATTCCATAAATGAAATGCATGAAAGGATG-CACT-AA-GGCATAAAAGGAAGCCA
1 GCATGAAAGG-----ATGAAT-TAAGGCATGAAAGGATGCCA-TAAATGAAATACATGAAAG-GA
** * *
6926286 TAAATGAAAT
58 TGCAT-TAAG
6926296 GCATGAAAGGATGAATTAAGGCATGAAAGGATGCCATAAATGAAATACATGAAAGGATGCATTAA
1 GCATGAAAGGATGAATTAAGGCATGAAAGGATGCCATAAATGAAATACATGAAAGGATGCATTAA
6926361 G
66 G
* * * * ** *
6926362 GCATGGAAGGATGCATTAAGGCATGAAAGGATGCTATAAATAAAATGTATGAAAGGATGCATTAG
1 GCATGAAAGGATGAATTAAGGCATGAAAGGATGCCATAAATGAAATACATGAAAGGATGCATTAA
6926427 G
66 G
6926428 GCATGAAAGGAT
1 GCATGAAAGGAT
6926440 CCATAAATGA
Statistics
Matches: 167, Mismatches: 37, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
66 98 0.59
67 13 0.08
68 9 0.05
70 7 0.04
71 12 0.07
72 28 0.17
ACGTcount: A:0.44, C:0.10, G:0.26, T:0.20
Consensus pattern (66 bp):
GCATGAAAGGATGAATTAAGGCATGAAAGGATGCCATAAATGAAATACATGAAAGGATGCATTAA
G
Found at i:6926366 original size:112 final size:111
Alignment explanation
Indices: 6926250--6926452 Score: 316
Period size: 112 Copynumber: 1.8 Consensus size: 111
6926240 TAAATGAAAT
*
6926250 GCATGAAAGGATGCACTAAGGCATAAAAGGAAGCCATAAATGAAATGCATGAAAGGATGAATTAA
1 GCATGAAAGGATGCACTAAGGCATAAAAGGAAGCCATAAATAAAATGCATGAAAGGATGAATTAA
6926315 GGCATGAAAGGATGCCATAAATGAAATACATGAAAGGATGCATTAAG
66 GGCATGAAAGGAT-CCATAAATGAAATACATGAAAGGATGCATTAAG
* * * * * * * *
6926362 GCATGGAAGGATGCATTAAGGCATGAAAGGATGCTATAAATAAAATGTATGAAAGGATGCATTAG
1 GCATGAAAGGATGCACTAAGGCATAAAAGGAAGCCATAAATAAAATGCATGAAAGGATGAATTAA
6926427 GGCATGAAAGGATCCATAAATGAAAT
66 GGCATGAAAGGATCCATAAATGAAAT
6926453 TAACGAATGG
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
111 13 0.16
112 69 0.84
ACGTcount: A:0.45, C:0.10, G:0.26, T:0.20
Consensus pattern (111 bp):
GCATGAAAGGATGCACTAAGGCATAAAAGGAAGCCATAAATAAAATGCATGAAAGGATGAATTAA
GGCATGAAAGGATCCATAAATGAAATACATGAAAGGATGCATTAAG
Found at i:6927052 original size:68 final size:68
Alignment explanation
Indices: 6926918--6927052 Score: 155
Period size: 68 Copynumber: 2.0 Consensus size: 68
6926908 AGATTAGTGA
* * * *
6926918 CCTAACTGTGCATTTGACAAAAAGGTGTCAATCATACAAGTTAGATGAAAGGCTAGATGCCTTTG
1 CCTAACTGTGCATTTGACAAAAAGGTGTCAATCATACAAGTTAGATGAAAGACTAAATACCATTG
6926983 AGG
66 AGG
** * * * * *
6926986 CCTAACTGTGCATTTGACAGGAATGTGTCAATGATGCCAA-TTAGATGAACGATTAAATACCATT
1 CCTAACTGTGCATTTGACAAAAAGGTGTCAATCAT-ACAAGTTAGATGAAAGACTAAATACCATT
6927050 GAG
65 GAG
6927053 TAAAAGATTT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
68 52 0.95
69 3 0.05
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.27
Consensus pattern (68 bp):
CCTAACTGTGCATTTGACAAAAAGGTGTCAATCATACAAGTTAGATGAAAGACTAAATACCATTG
AGG
Found at i:6928055 original size:420 final size:421
Alignment explanation
Indices: 6927271--6928086 Score: 1393
Period size: 420 Copynumber: 1.9 Consensus size: 421
6927261 TATAAATATA
* *
6927271 AATGAATAAAGAGATAAATTAAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATATTAAA
1 AATGAATAAAGAGATAAATGAAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACTAAA
* ** * *
6927336 AATAATTAAGATAATTGTGAATGGAATACGGTTTAAATGAGGAGGATTATAGGACCCTTAAAGAA
66 AATAATCAAGATAATTGTGAATGGAATACGAATTAAAAGAGGAGAATTATAGGACCCTTAAAGAA
* *
6927401 TATACGATTTAGTACGAACTAAATAAATATGATATACCTATGTATACACAAAGGTTACTTTACAG
131 TATACGATTTAGTACGAACTAAATAAATATGACATACCTATGTATACACAAAGGTTACTTTACAA
* * *
6927466 TATTATTTCTCACTAAGTAAATACTTAACGTGTGATGTTTCCACGCGTAGGTAAAAGTGGAGACA
196 TATTATGTCTCACTAAGTAAATACTTAACGTGTGATGTTTCAACGCGTAGGTAAAAGCGGAGACA
*
6927531 AATTAAATAAGGAGTGCAACAGTAGCAACAAATATCATCTGTTAAGGTTGACTCTCATCAGTAAT
261 AATTAAATAAGGAGTGCAACAGTAGCAACAAATATCATCTGTTAAGGTTGACTCTCATCAGTAAC
* **
6927596 AGTAGGACAATCATGTTTATTTTGAACAATTGTTGGCATGTAATAAAATTTAAAGAAAAATGCTC
326 AGTAGAACAATCATGTTTATTTTGAACAATTACTGGCATGTAATAAAATTTAAAGAAAAATGCTC
6927661 TGTAATGTTGCTATCAATGAAAATAAAGAAT
391 TGTAATGTTGCTATCAATGAAAATAAAGAAT
* *
6927692 AATGAATAAAGAGATAAATGGAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCGTACTAAA
1 AATGAATAAAGAGATAAATGAAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACTAAA
** *
6927757 AATAATCAAGATAATAT-TGAATGGAATAC-AATTAAAAGTTGAGAATTATAGGATCCTTAAAGA
66 AATAATCAAGATAAT-TGTGAATGGAATACGAATTAAAAGAGGAGAATTATAGGACCCTTAAAGA
6927820 ATATACGATTTAGTACGAACTAAATAAATATGACATACCTATGTATACACAAAGGTTACTTTACA
130 ATATACGATTTAGTACGAACTAAATAAATATGACATACCTATGTATACACAAAGGTTACTTTACA
*
6927885 ATATTATGTCTCACTAAGTAAATACTTAACGTTTGATGTTTCAACGCGTAGGTAAAAGCGGAGAC
195 ATATTATGTCTCACTAAGTAAATACTTAACGTGTGATGTTTCAACGCGTAGGTAAAAGCGGAGAC
6927950 AAATTAAATAAGGAGTGCAACAGTAGCAACAAATATCATCTGTTAAGGTTGACTCTCATCAGTAA
260 AAATTAAATAAGGAGTGCAACAGTAGCAACAAATATCATCTGTTAAGGTTGACTCTCATCAGTAA
* *
6928015 CGGTAGAACAATCATGTTTATTTTGAACAATTACTGGCATGTAATCAAATTTAAAGAAAAATGCT
325 CAGTAGAACAATCATGTTTATTTTGAACAATTACTGGCATGTAATAAAATTTAAAGAAAAATGCT
6928080 CTGTAAT
390 CTGTAAT
6928087 ATATATAAAG
Statistics
Matches: 370, Mismatches: 24, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
420 282 0.76
421 87 0.24
422 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (421 bp):
AATGAATAAAGAGATAAATGAAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACTAAA
AATAATCAAGATAATTGTGAATGGAATACGAATTAAAAGAGGAGAATTATAGGACCCTTAAAGAA
TATACGATTTAGTACGAACTAAATAAATATGACATACCTATGTATACACAAAGGTTACTTTACAA
TATTATGTCTCACTAAGTAAATACTTAACGTGTGATGTTTCAACGCGTAGGTAAAAGCGGAGACA
AATTAAATAAGGAGTGCAACAGTAGCAACAAATATCATCTGTTAAGGTTGACTCTCATCAGTAAC
AGTAGAACAATCATGTTTATTTTGAACAATTACTGGCATGTAATAAAATTTAAAGAAAAATGCTC
TGTAATGTTGCTATCAATGAAAATAAAGAAT
Found at i:6930429 original size:15 final size:15
Alignment explanation
Indices: 6930409--6930453 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6930399 TAGTAGGATT
* *
6930409 TCAAGTGATGCGTTA
1 TCAAGTGAGGCATTA
6930424 TCAAGTGAGGCATTA
1 TCAAGTGAGGCATTA
*
6930439 TCAGGTGAGAGCATT
1 TCAAGTGAG-GCATT
6930454 TTACTTATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (15 bp):
TCAAGTGAGGCATTA
Found at i:6934054 original size:12 final size:12
Alignment explanation
Indices: 6934033--6934062 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6934023 TACTTAAATG
*
6934033 AAATAGAATCAT
1 AAATAAAATCAT
6934045 AAATAAAATCAT
1 AAATAAAATCAT
6934057 AAATAA
1 AAATAA
6934063 CATAAGGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (12 bp):
AAATAAAATCAT
Found at i:6934850 original size:20 final size:20
Alignment explanation
Indices: 6934825--6934868 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6934815 GCATCCGAAT
*
6934825 TAAAATGAACTAAATATAAA
1 TAAAATGAACAAAATATAAA
**
6934845 TAAAATGGTCAAAATATAAA
1 TAAAATGAACAAAATATAAA
6934865 TAAA
1 TAAA
6934869 CAAAAGCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.25
Consensus pattern (20 bp):
TAAAATGAACAAAATATAAA
Found at i:6937671 original size:21 final size:21
Alignment explanation
Indices: 6937647--6937692 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
6937637 TCATTTACAC
6937647 TTAGCTCATAGTATGTTTATG
1 TTAGCTCATAGTATGTTTATG
6937668 TTAGCTCATAGTATGTTTATG
1 TTAGCTCATAGTATGTTTATG
6937689 TTAG
1 TTAG
6937693 TTCGTTGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGCTCATAGTATGTTTATG
Found at i:6938083 original size:21 final size:21
Alignment explanation
Indices: 6938025--6938075 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
6938015 CTGGAGTGAC
6938025 ACTATG-TACCTAGCTAGCTA
1 ACTATGCTACCTAGCTAGCTA
* *
6938045 CCTATACTACCTAGCTAGCTA
1 ACTATGCTACCTAGCTAGCTA
6938066 ACTATGCTAC
1 ACTATGCTAC
6938076 ATATCTAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (21 bp):
ACTATGCTACCTAGCTAGCTA
Found at i:6947813 original size:41 final size:41
Alignment explanation
Indices: 6947756--6947839 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
6947746 AAATTATATA
6947756 ATTTATCTTACTTGAATGGTCATAACTTGAACACATGTAGT
1 ATTTATCTTACTTGAATGGTCATAACTTGAACACATGTAGT
6947797 ATTTATCTTACTTGAATGGTCATAACTTGAACACATGTAGT
1 ATTTATCTTACTTGAATGGTCATAACTTGAACACATGTAGT
6947838 AT
1 AT
6947840 AGTATAATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (41 bp):
ATTTATCTTACTTGAATGGTCATAACTTGAACACATGTAGT
Found at i:6951956 original size:54 final size:54
Alignment explanation
Indices: 6951897--6952338 Score: 641
Period size: 54 Copynumber: 8.2 Consensus size: 54
6951887 ATTAGTTTTC
* * * * * * * * * *
6951897 GCACACATAATGTCGATACGGTAATTCAAAAACTCATTATGAATTACGTGGGGT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
*
6951951 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCATAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* *
6952005 GCACACATAGTGTCAATACGGAAATTCATAAACAAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* *
6952059 GCACACATAGTGTCAATACGGAAATTCAAAAACTAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* *
6952113 GCACAAATAGTGCCGATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* * * *
6952167 ACACAGATAGTGTCGATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* * *
6952221 GCACACATAGTGCCAATACGAAAATTCATAAAGTAATTATGAATTTTTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* *
6952275 GCACACATAGTGCCAATACGGAAATTCATAAACTTATTATGTATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
*
6952329 GCATACATAG
1 GCACACATAG
6952339 CGCCCATTCA
Statistics
Matches: 353, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 353 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (54 bp):
GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
Found at i:6954929 original size:22 final size:22
Alignment explanation
Indices: 6954897--6954963 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
6954887 AGTCGAGGGT
*
6954897 TACATATGTCCTTCGGGACATA
1 TACATAGGTCCTTCGGGACATA
*
6954919 TACATAGGTCCTTCGGGACAAA
1 TACATAGGTCCTTCGGGACATA
*
6954941 TACATAGGTCCTTCGAGACATA
1 TACATAGGTCCTTCGGGACATA
6954963 T
1 T
6954964 TTCACATGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (22 bp):
TACATAGGTCCTTCGGGACATA
Found at i:6957119 original size:365 final size:365
Alignment explanation
Indices: 6956440--6957141 Score: 955
Period size: 365 Copynumber: 1.9 Consensus size: 365
6956430 ATCCCCAACA
* * * *
6956440 AGCTTTTAAAACCCTAAGTAATTTCCATTGAACTCAAAATATTTGATTGTTACCTTATAAGATAA
1 AGCTTTTAAAACCCTAAGTAATTCCCATTGAACTCAAAATATTTAAGTGTTACCTCATAAGATAA
* * * **
6956505 GTTATCGACATCAAGGTGCATATCCTCAAGAATATCAAGATCCTCGAGTATGCCATACAAATATT
66 GTTATCGACATCAAGGTACATATCCTCAAGAATATCAAGATCCTCGAGAATGCCATACAAAAAGG
* * * *
6956570 AAGGATTGATTACCATCACATCCTGCCATATATTCTATGTTGGTGCGAAATCAGTGTTAAACATT
131 AAGGACTGATTACAATCACATCCTGCCATATATTCCATGTTGGTGCAAAATCAGTGTTAAACATT
* * * * * *
6956635 GATAATAATAGCATTGATTTCCTTCATATTCAAACATTGATATTCTAGTTGTTATGGACTAATGT
196 GATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAATATTCTAATTATTATAGACTAATAT
* * * * *
6956700 TTTCGTCTTCTTATATTGGCGAGAATAGTTTCCTCGCTTAGTCCACTACAAACATCCCCAATTTG
261 TTTCGTCTTCTCATATTGACCAGAATAGTTTCCTCACTTAGTCCACCACAAACATCCCCAATTTG
6956765 CTCCTCCAACTCAAACAATTCCGACAAAATAAGTGACACG
326 CTCCTCCAACTCAAACAATTCCGACAAAATAAGTGACACG
6956805 AGCTTTTAAAACTCC-AAGTAATTCCCATT-ATACTCAAAATATTTAAGTGTTACCTCATAAGAT
1 AGCTTTTAAAAC-CCTAAGTAATTCCCATTGA-ACTCAAAATATTTAAGTGTTACCTCATAAGAT
* * * * * * *
6956868 ATGTTATCTACATCTAGGTACATATCCTCAATAATATGAGGATCCTC-AGGAATGCCTTACAAAA
64 AAGTTATCGACATCAAGGTACATATCCTCAAGAATATCAAGATCCTCGA-GAATGCCATACAAAA
* *
6956932 AGGAATGACTGATTACAATCACATCCTGCCTTATATTCCATGTTGGTGCAAAA-CTAGTGTTAAA
128 AGGAAGGACTGATTACAATCACATCCTGCCATATATTCCATGTTGGTGCAAAATC-AGTGTTAAA
* * * *
6956996 CATTGATAAGATTAGCATTGATTTCCTTCATATTCATACATTAATATTTTAATTATTATAGACTG
192 CATTGATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAATATTCTAATTATTATAGACTA
* * *
6957061 ATATTTTCGTCTTCTCATATTGACCATAATAGTTTCCTCATTTAGTCC-CGCGCAAACATCCCCA
257 ATATTTTCGTCTTCTCATATTGACCAGAATAGTTTCCTCACTTAGTCCAC-CACAAACATCCCCA
*
6957125 ATTTGCTCTTCCAACTC
321 ATTTGCTCCTCCAACTC
6957142 CTACAGTTCA
Statistics
Matches: 291, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
364 4 0.01
365 285 0.98
366 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (365 bp):
AGCTTTTAAAACCCTAAGTAATTCCCATTGAACTCAAAATATTTAAGTGTTACCTCATAAGATAA
GTTATCGACATCAAGGTACATATCCTCAAGAATATCAAGATCCTCGAGAATGCCATACAAAAAGG
AAGGACTGATTACAATCACATCCTGCCATATATTCCATGTTGGTGCAAAATCAGTGTTAAACATT
GATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAATATTCTAATTATTATAGACTAATAT
TTTCGTCTTCTCATATTGACCAGAATAGTTTCCTCACTTAGTCCACCACAAACATCCCCAATTTG
CTCCTCCAACTCAAACAATTCCGACAAAATAAGTGACACG
Found at i:6959747 original size:24 final size:24
Alignment explanation
Indices: 6959711--6959781 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
6959701 TTTGATTTGA
* * *
6959711 ATTCTGTTATGATACCTGACCTGG
1 ATTCTGATCTGATACATGACCTGG
*
6959735 ATTCTGATCTGATACATAACCTGG
1 ATTCTGATCTGATACATGACCTGG
*
6959759 ATTCTGATCTGATACTTGACCTG
1 ATTCTGATCTGATACATGACCTG
6959782 AATTATGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (24 bp):
ATTCTGATCTGATACATGACCTGG
Found at i:6963818 original size:260 final size:259
Alignment explanation
Indices: 6963157--6970769 Score: 6625
Period size: 257 Copynumber: 29.2 Consensus size: 259
6963147 TAATTTTCGT
* * * * * *
6963157 AAAAACGAGAAAACAATTTTCAAACATTT-TCATTTAAG-ATGTTT-AGAAAATGAAATTTTTGA
1 AAAAATGAGAAAACGATTTTCAAA-GTTTCTCATTT-AGTAT-TTTCAAAAAATAAAAATTTTGA
* * * *
6963219 AAAGTAAGAAAGTGATTTCCAAATTTTCTTACCT-GATAGACTATTTCCAAAATTGGCAAGTTCT
63 AAAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAG-TAGACTATTTCCAAAATTGGTAAGTCCT
* * * * ***
6963283 TCAGGCCATCAGTAAGTCCTTCGAGCAAGATTATTAAATCCTTCCTGTCATCTGTCAGTCTTTCG
127 TAAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCG
* * * *
6963348 AGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGAGCAGGATGTTTTAATATG--ATT
192 AGCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATT
6963411 TGTA
256 TGTA
* *
6963415 AAAAATGAGAAAGA-GATTTTCAAAGATTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAA
1 AAAAATGAGAAA-ACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-AAAAATAAAAATTTTGAA
* * * * * *
6963479 AATTAATAAAGAGATTTCCAAAGTTTCTTGCC-AGGTAGACTATTTCCAAAATTGGTATGTCCTT
64 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCTT
* * * * *
6963543 CAA-GCCATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATCTTTCTGTCATTCC
128 -AAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCG
* *
6963607 AGCAAGATGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATT
192 AGCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATT
**
6963672 TGGG
256 TGTA
* * *
6963676 AAAAACGAGAAAACGATTATCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
*
6963741 GTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * *
6963806 GCCATTAGTAAGTCTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGTCAGACTTTCGAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* * * * * * * *
6963870 AAGATTATAAATCATTGGACCATCTCTAAGACCTTTGGGTAAGATGTTTTCATATG--ATTTATA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * *
6963933 AAAAATGAGAAAATGATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * * * * **
6963997 AGTAAGAAAGTGGTTTCCAAAATTTCTTACCAAGTAGACTATTTCTAAAATTGCTAAGTCTTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * * * * * *
6964062 GGTCATCAGTAAGTCATTT-GA-CATTATGATTTAATCCTTCGGGTCTTATGTCATTCTTTTGAG
130 GGCCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAG
* * * *
6964125 TAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATG--ATTTG
194 CAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTG
6964188 TA
258 TA
*
6964190 AAAAATGAG-AAACTGATTTTCAAAGTTTCTCATTTAGGATTTTCATAAAAATAAAAATTTTGAA
1 AAAAATGAGAAAAC-GATTTTCAAAGTTTCTCATTTAGTATTTTCA-AAAAATAAAAATTTTGAA
* * *
6964254 AAGTAAGAAAGAT-ATTTCCAAAGTTTCTT-GCTAGGTAGACTATTTCCAAAACTGGTAAGTCCT
64 AAGTAAGAAAG-TGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCT
* * * * * *
6964317 T-TGAGCCATCAATAATTATTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTC
127 TAAG-GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTC
* * * * *
6964381 GAGCAAGATGAGAAGTTCTTAGGGTCATCTATAAGACCTTCGGGGAAGATGTTTTCATGTGATAT
191 GAGCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATAT
6964446 TTGTGA
255 TTGT-A
* *
6964452 AAAAATGAGAAAACGCTTTTCAAAG-TTCTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTC-TCATTTAGTATTTTCAAAAAATAAAAATTTTGAAA
* * **
6964516 AGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCTTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * * * * *
6964581 GGTCATCAGTAA---TTT-GA-CATTATGATTAAATCCTTCGGGTCATATATCATTCTTTCGAGT
130 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGC
* * * *
6964641 AAGATGATTAGTCCTTCGGGCCATCTATAAGACATTTGGGCAAGATGTTTTAATATG--ATTTGT
195 AAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGT
6964704 A
259 A
* * *
6964705 AAAAATGAGAAAGCGATTTTAAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-AAAAATAAAAATTTTGAAA
* * * * **
6964770 AGTAATAAAGAGATTTCCAAAGTTTCTTGCC-AGGTAGACTATTTCCAAAATTGGTAAGTTTTTC
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCTT-
* * * *
6964834 AA-GCCATCAATAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGA
128 AAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGA
* * * * * *
6964898 GTAAGATGATAAGTTCATAGGGCCATCTATAAGACCTTGGGGCAAGATGTTTTCATGTGATATAT
193 GCAAGATGATAAG-TCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTT
**
6964963 GGG
257 GTA
* * * *
6964966 AAAAATGAGAAAACAATTTTCATAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
*
6965031 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTTCAAAATTGGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * *
6965096 GCCATTAGTAAGTCTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGTCAGACTTTCGAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* * * * *
6965160 AAGATTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATG--ATTTGTA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * *
6965223 AAAAATGAGAAAACGATTTTTAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * * *
6965287 AGTAAGAAAGTGGTTTCCAAAATTTCTTACCAAGT-GTACTATTTCCAAAATTGGTAAGTCTTTT
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAG-ACTATTTCCAAAATTGGTAAGTCCTTA
* * * * * *
6965351 GGGTCATCAGTAAGTCATTT-GA-CATTATGATTAAATCCTTCGGGTCATATGTCATTCTTTCGA
129 AGGCCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGA
* * * *
6965414 GCAAGATGATAAGTCCTTTAGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATG--ATTT
193 GCAAGATGATAAGTCC-TTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTT
6965477 GTA
257 GTA
*
6965480 AAAAATGAG-AAACTGATTTTCAAAGTTTCTCATTTAGGATTTTCATAAAAATAAAAATTTTGAA
1 AAAAATGAGAAAAC-GATTTTCAAAGTTTCTCATTTAGTATTTTCA-AAAAATAAAAATTTTGAA
* * *
6965544 AAGTAAGAAAGTGATTTCCAAAGTTTCTT-GCTAGGTAGACTATTTCCAAAACTGGTAAGTCCTT
64 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCTT
* * * * *
6965608 -TGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCG
128 AAG-GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCG
* * * *
6965672 AGCAAGATGATAAGTTCTTAGGGCAATCTATAAGACCTTCGGGGAAGATGTTTTCATGTGATATT
192 AGCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATT
*
6965737 TGTG
256 TGTA
* * *
6965741 AAAAATGAGAAAACGCTTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
* *
6965806 GTAAGAAAGTTTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * * * * *
6965871 GCTATTAGTTAGTCTTTCGAGCATGATGATTGAATAC-TATTGGTCATCTGTCAGACTTTCGAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* * * * * * *
6965935 AAGATTATAAGTCCTTGGGCCATCTAGAAGACCTTTGAGTAGGATGATTTCATATG--ATTTGTA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * ** * * * * *
6965998 AAATATAAGAAAATAATTTTCAAAATTTCGCATTTAAGAATTTT-AGAAAATGAAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * **
6966062 AGTAAGAAAGTGGTCTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * ** * * **
6966127 GGTCATCAGTAAGTCATTC-AATATTATGATGAAATCCTTCTGGTCATCTGTCAGTCTTTCGAGC
130 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGC
* * * *
6966191 AAGATGATAAGTTCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATG--ATTTGT
195 AAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGT
6966254 A
259 A
* * *
6966255 GAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCA-AAAAATAAAAATTTTGAAA
* * *
6966320 AGTAAGAAAGAGATTTCCAAAGTTTCTTACC-AGGTAGAATATTTCCAAAATTGGTAAGTCCTTC
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCTT-
* * * *
6966384 AA-GCCATTAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGA
128 AAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGA
* * ** * *
6966448 GCAAGATAATAAGTTCTTAGGATCATCTATAAGACCTTCGAGCAAGATGTTTTCATGTGATATTT
193 GCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTT
*
6966513 GTG
257 GTA
* * *
6966516 AAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTACAAAAAATAAAATTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
* *
6966581 TTAAGAAA-TCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTATGTCCTTAA
66 GTAAGAAAGT-GTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * *
6966645 GGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGTTA-TACTTTCGA
130 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGT-CTTTCGA
* * * * * * *
6966708 GCAAGATTATAAGTCCTTGGACCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATG--ATTTC
193 GCAAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTG
6966771 TA
258 TA
* * * * *
6966773 AAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATTTTAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * **
6966837 AGTAAGAAAGTGGTTTCCAAAATTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * * * *
6966902 GGTCATCAGTAAGTCATTT-GA-CATTATGTTTAAATCCTTCGGGTCATATGTCATTCTTTCGAG
130 GGCCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAG
* * * * * * * *
6966965 CAAAATGACAAGTCCTTCAGGCCATATATAAAACATTCGGGCAGGATGTTTTAATATG--ATTTG
194 CAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTG
6967028 TA
258 TA
* * *
6967030 AAAAATGAG-AAACTGATTTTCAAAGTATCTCATTTAGGATTTTCATAAAAATAAAATTTTTGAA
1 AAAAATGAGAAAAC-GATTTTCAAAGTTTCTCATTTAGTATTTTCA-AAAAATAAAAATTTTGAA
* * * * *
6967094 AAATAAGAAAGAGATTTCCAAAGTTTCTT-GCTAGGTAGACTATTTCCAAAACTGGTAAGTCCTT
64 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTCCTT
* * *
6967158 -TGAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTT-
128 AAG-GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTC-TTTC
* * * *
6967221 GAGCAAGATGATAAGTTCTTAAGGTCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATAT
191 GAGCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATAT
*
6967286 TTGTG
255 TTGTA
* * **
6967291 AAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTTAAAAAATAAATTTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
6967356 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * * *
6967421 GCCATTAGTAAGTCTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGTCAGACTTTCAAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* * * * * *
6967485 AAGATTATAAGTCCTTGGGTCATCTATAAGACCTTTGTGTAGGATGTTTTCATATG--ATTTGTA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * * * *
6967548 AAAAATGAGAAAGCGATTTTCAAAATTTCTAATTTAAGAATTTT-AGAAAATGAACATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * * **
6967612 AGTAAGAAAGTGGTCTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * * *
6967677 GGTCATCAGTAAGTCATTCGA-AATTATGATTAAATCCTTCA-GGTCATCTGTCATTCTTTCGAG
130 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-AGGGTCATCTGTCAGTCTTTCGAG
* * * ** * * * ** * **
6967740 CAAGATGATAAGTCCTTCGGGTCATCTGTCATTCTTTTGAGCAAGATGATAAGTCCT-TCGCCAT
194 CAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATG-T-TTTCATAT-GATAT
* *
6967804 CTATA
255 TTGTA
* * * ** * * * * *
6967809 AGACATTCAG-GCAGGATGTTTTAATATGATTTCTAAAAAATGTGAAACCTATTTTCAAAGTTTC
1 A-AAAATGAGAAAACGAT-TTTCAA-A-G-TTTCT----CAT-T--TA-GTATTTTCAAA-----
** ** * * ** ** ** **
6967873 TCATTTAGGATTTTTAGAAAAATAA-AAA-T-TTTGAAAAGTAAGAAAGAGATTTCAAAAGTTTC
48 --AAATAAAAATTTT-GAAAAGTAAGAAAGTGTTT------T--CCAA-AG-TTTC-TTACCTAG
* ** ** ** *** ** *
6967935 TTG-CTAGGTAGACTATTTCCAA-AACTGGTAAGTCCTTTGAGCCATCAATAAGTCTTTCGAGCA
99 TAGACTATTTCCAAAATTGGTAAGTCCT--TAA-------G-GCCATCAGTAAGTCTTTCGAGCA
* * * * *
6967998 TGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGTAAGATGATATGTCCTTTGGGCCAT
154 TGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCC-TTGGGCCAT
* * ** *
6968063 CTATAAGACCTACGGGTAAGATGTTTTCACGTGATATTTGTG
218 CTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * * * *
6968105 AAAAATAAGAAAACGATTTTCAAAGTTTTTAATTTAGGATTTTCAGAAAATGAAATTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
*
6968170 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * * *
6968235 GCCATTACTAAGTTTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGT-AGTCTTTCGAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* ** * * * * * * * **
6968298 -------T--GTCCTTGGGCCATCTATATGAGTTTTGGGTAGGTTATTTTCATATGATCTGTAAA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * *
6968354 AAAAATGAGAAAACGATTTTCAAAATTTTTCATTTAAG-ATTTTTAGAAAAT-TAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * *
6968417 AGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAAACTATTTCCCAAAATTGGTAAGTCCTTT
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTT-CCAAAATTGGTAAGTCCTTA
* * * * *
6968482 GGGTCATCAGTAAGTCATTT-GAGCATGATGATTAAATCCTTCGGGTCATCTGTTAGTCTTTTGA
129 AGGCCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGA
* * * * * *
6968546 GCAAGATGATAAGTCCCTTGGGCTATCTATAAAACCTTCTGGCATGATATTTCCATATGATATTT
193 GCAAGATGATAAGT-CCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTT
*
6968611 GAAAA
257 G--TA
* * * * * *
6968616 AAAAATGAGAAAGCGAGTGTCAAAGTTTCTCATTTA-TGATTTTCAGAAAAT-TAAATTTCTAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGT-ATTTTCAAAAAATAAAAATTT-TGAA
* * * * * * *
6968679 AAGTAAGAAA-CGATTTCTAAAGTTTTTTACCCAGTAGACTATTTCCAAAATTGCTAAGT-CTTT
64 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
* * * * * *
6968742 CGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTTGGGTCATCTTTCAGTCATTCGA
129 AG-GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGA
* * * *
6968807 GCAAGATGATAAGTTCTTAGGGCAATCTATAAGACCTTCGGGGAAGATGTTTTCATGTGATATTT
193 GCAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTT
*
6968872 GTG
257 GTA
* * * *
6968875 AAAAATGAGAAAACGCTTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATTAAATTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
* *
6968940 GTAAGAAAGTTTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * * *
6969005 GCCATTAGTAAGTCTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGTCAGACTTTCAAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* * * * * *
6969069 AAGATTATAAGTCCTTGGGTCATCTATAAGACCTTTGTGTAGGATGTTTTCATATG--ATTTGTA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * * * *
6969132 AAAAATGAGAAAGCGATTTTCAAAATTTCTAATTTAAGAATTTT-AGAAAATGAACATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * * **
6969196 AGTAAGAAAGTGGTCTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * * *
6969261 GGTCATCAGTAAGTCATTCGA-AATTATGATTAAATCCTTCA-GGTCATCTGTCATTCTTTCGAG
130 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT-AGGGTCATCTGTCAGTCTTTCGAG
* * * ** * * * ** * **
6969324 CAAGATGATAAGTCCTTCGGGTCATCTGTCATTCTTTTGAGCAAGATGATAAGTCCT-TCGCCAT
194 CAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAAGATG-T-TTTCATAT-GATAT
* *
6969388 CTATA
255 TTGTA
* * * ** * * * * *
6969393 AGACATTCAG-GCAGGATGTTTTAATATGATTTCTAAAAAATGTGAAACCTATTTTCAAAGTTTC
1 A-AAAATGAGAAAACGAT-TTTCAA-A-G-TTTCT----CAT-T--TA-GTATTTTCAAA-----
** ** * * ** ** ** **
6969457 TCATTTAGGATTTTTAGAAAAATAA-AAA-T-TTTGAAAAGTAAGAAAGAGATTTCAAAAGTTTC
48 --AAATAAAAATTTT-GAAAAGTAAGAAAGTGTTT------T--CCAA-AG-TTTC-TTACCTAG
* ** ** ** *** ** *
6969519 TTG-CTAGGTAGACTATTTCCAA-AACTGGTAAGTCCTTTGAGCCATCAATAAGTCTTTCGAGCA
99 TAGACTATTTCCAAAATTGGTAAGTCCT--TAA-------G-GCCATCAGTAAGTCTTTCGAGCA
* * * * *
6969582 TGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGTAAGATGATATGTCCTTTGGGCCAT
154 TGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCAAGATGATAAGTCC-TTGGGCCAT
* * ** *
6969647 CTATAAGACCTACGGGTAAGATGTTTTCACGTGATATTTGTG
218 CTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * * * *
6969689 AAAAATAAGAAAACGATTTTCAAAGTTTTTAATTTAGGATTTTCAGAAAATGAAATTTTTGAAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
*
6969754 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTTAAG
66 GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
* * * * *
6969819 GCCATTACTAAGTTTTTCGAGCATGATGATTAAATAC-TATTGGTCATCTGT-AGTCTTTCGAGC
131 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTA-GGGTCATCTGTCAGTCTTTCGAGC
* ** * * * * * * * **
6969882 -------T--GTCCTTGGGCCATCTATATGAGTTTTGGGTAGGTTATTTTCATATGATCTGTAAA
195 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
* * * * *
6969938 AAAAATGAGAAAACGATTTTCAAAATTTTTCATTTAAG-ATTTTTAGAAAAT-TAAATTTTGAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAAA
* * * * **
6970001 AGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAAACTATTCCCAAAATTGGTAAGTCCTTTG
65 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* * * *
6970066 GGTCATCAGTAAGTCATTT-GAGCATGATGATTAAATCCTTCGGGTCATCTGTTAGTCTTTTGAG
130 GGCCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAG
* * * * * *
6970130 CAAGATGATAAGTCCCTTGGGCTATCTATAAAACCTTCTGGCATGATATTTCCATATGATATTTG
194 CAAGATGATAAGT-CCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTG
*
6970195 AAAA
258 --TA
* * * * * *
6970199 AAAAATGAGAAAGCGAGTGTCAAAGTTTCTCATTTA-TGATTTTCAGAAAAT-TAAATTTCTAAA
1 AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGT-ATTTTCAAAAAATAAAAATTT-TGAA
* * * * * * *
6970262 AAGTAAGAAA-CGATTTCTAAAGTTTTTTACCCAGTAGACTATTTCCAAAATTGCTAAGT-CTTT
64 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
* * * * *
6970325 CGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTTGGGTCATCTATCAGTCTTTCGA
129 AG-GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGA
* *** * * * * *
6970390 GAAAGATGATAAGTCCCTCATGCCACCTATAATACCTTCGAGTAAGATGTTTCCATATGATATTT
193 GCAAGATGATAAGT-CCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTT
*
6970455 GAAA
257 G-TA
** * * * * **
6970459 AAAATATGAGAAAGTGGTTTTCAAAGTTTCTCATTTAAG-ATTTTTAGAAAATGAATTTTTTGAA
1 AAAA-ATGAGAAAACGATTTTCAAAGTTTCTCATTT-AGTATTTTCAAAAAATAAAAATTTTGAA
* * * * *
6970523 AAGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAATAGACTATTTTCCAAAATTGGTAAGTCATT
64 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTA-TTTCCAAAATTGGTAAGTCCTT
** * * * * * * * * *
6970588 CGGGCTATCAATAAGTCTTTCGAGCATGATAATTAAATCATGCAGGCT-ATTTGTTAGGCTTTCG
128 AAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TAGGGTCATCTGTCAGTCTTTCG
* * *
6970652 AGCAAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCTGGCAGGATGTTTTCATATG--ATT
192 AGCAAGATGATAAGT-CCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATT
6970715 TGTA
256 TGTA
**** ** *
6970719 AAAAAGTGAGAAATTTTTTTTCAAAGTTTCTCATTTAAAAATTTCAAAAAA
1 AAAAA-TGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAA
6970770 AAATGAAAAA
Statistics
Matches: 5951, Mismatches: 1114, Indels: 578
0.78 0.15 0.08
Matches are distributed among these distances:
248 158 0.03
249 232 0.04
250 27 0.00
252 2 0.00
253 39 0.01
254 92 0.02
256 404 0.07
257 1107 0.19
258 427 0.07
259 939 0.16
260 993 0.17
261 713 0.12
262 192 0.03
263 132 0.02
264 6 0.00
265 10 0.00
268 14 0.00
269 34 0.01
270 10 0.00
271 6 0.00
272 10 0.00
273 6 0.00
276 16 0.00
277 22 0.00
278 4 0.00
279 8 0.00
280 18 0.00
281 16 0.00
284 18 0.00
285 2 0.00
286 4 0.00
287 10 0.00
288 36 0.01
289 8 0.00
292 8 0.00
293 2 0.00
294 2 0.00
295 20 0.00
296 26 0.00
297 40 0.01
298 134 0.02
299 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (259 bp):
AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAGTATTTTCAAAAAATAAAAATTTTGAAAA
GTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCA
AGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATATGATATTTGTA
Found at i:6965017 original size:775 final size:770
Alignment explanation
Indices: 6963157--6970762 Score: 9056
Period size: 775 Copynumber: 9.7 Consensus size: 770
6963147 TAATTTTCGT
* * * * * * *
6963157 AAAAACGAGAAAACAATTTTCAAACATTT-TCATTTAAGATGTTT-AG-AAAATGAAATTTTTGA
1 AAAAATGAGAAAGCGATTTTCAAA-GTTTCTCATTTAGGAT-TTTCAGAAAAATAAAAATTTTGA
* * * * * * *
6963219 AAAGTAAGAAAGTGATTTCCAAATTTTCTTACCTGATAGACTATTTCCAAAATTGGCAAGTTC-T
64 AAAGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTT
* * * * * *** * *
6963283 TCAGGCCATCAGTAAGTCCTTCGAGCAAGATTATTAAATCCTTCCTGTCATCTGTCAGTCTTTCG
129 TGA-GCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCG
* * * * * *
6963348 AGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGAGCAGGATGTTTTAATATG--ATT
193 AGCAAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATT
* * * * *
6963411 TGTAAAAAATGAGAAAGA-GATTTTCAAAGATTCTCATTTAGGATTTTCAGAAAAATAAAAATTT
258 TGTGAAAAATGAGAAA-ACGATTTTCAAAGTTTTTCATTTAGTATTTTCA-AAAAATAAAATTTT
* * ** * *
6963475 TGAAAATTAATAAAGAGATTTCCAAAGTTTCTTGCC-AGGTAGACTATTTCCAAAATTGGTATGT
321 TGAAAAGTAAGAAAG-TTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGT
* * * * * *
6963539 CCTTCAA-GCCATCAGTAAGTCTTTCGAGCACGATGATTAAATCCT-TAGGGTCATCTTTCTGTC
384 CCTT-AAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTAT-TGGTCATCTGTCAGTC
* * * * * * * *
6963602 ATTCCAGCAAGATGATAAGTTCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTG
447 TTTCGAGCAAGATTATAAGTCCTT-GGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATG
** * * * * * * *
6963667 ATATTTGGGAAAAACGAGAAAACGATTATCAAAGTTTTTCATTT-AGTATTTTCAAAAAATAAAA
511 --ATTTGTAAAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAA
* * *
6963731 ATTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTA
573 ATTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTA
** * * * * * *
6963796 AGTCCTTAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTAT-TGGTCATCTGTCAG
638 AGTCCTTTGGGTCATCAGTAA---TTT-GA-CATTATGATTAAATCCT-TCGGGTCATCTGTCAT
* * * * * * * * * * *
6963860 ACTTTCGAGCAAGATTATAAATCATT-GGACCATCTCTAAGACCTTTGGGTAAGATGTTTTCATA
697 TCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATA
*
6963924 TGATTTATA
762 TGATTTGTA
** * * *
6963933 AAAAATGAGAAAATGATTTTCAAAATTTCTCATTTAAGAATTTT-AG-AAAATGAAAATTTTGAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTT-AGGATTTTCAGAAAAATAAAAATTTTGAA
* * * * * * * *
6963996 AAGTAAGAAAGTGGTTTCCAAAATTTCTTACCAAGTAGACTATTTCTAAAATTGCTAAGTCTTTT
65 AAGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTT
* * * * * * * * * * * *
6964061 GGGTCATCAGTAAGTCATTT-GA-CATTATGATTTAATCCTTCGGGTCTTATGTCATTCTTTTGA
130 GAGCCATCAATAAGTC-TTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGA
* * * * * *
6964124 GTAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATG--ATTT
194 GCAAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTT
* * * *
6964187 GTAAAAAATGAG-AAACTGATTTTCAAAGTTTCTCATTTAGGATTTTCATAAAAATAAAAATTTT
259 GTGAAAAATGAGAAAAC-GATTTTCAAAGTTTTTCATTTAGTATTTTCA-AAAAATAAAATTTTT
* * *
6964251 GAAAAGTAAGAAAGATATTTCCAAAGTTTCTT-GCTAGGTAGACTATTTCCAAAACTGGTAAGTC
322 GAAAAGTAAGAAAG-TTTTTCCAAAGTTTCTTACCTA-GTAGACTATTTCCAAAATTGGTAAGTC
* * * * * * * * *
6964315 CTT-TGAGCCATCAATAATTATTTCGAGCATGATGATTAAATCCT-TAGGGTCATCTTTCAGTCA
385 CTTAAG-GCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTAT-TGGTCATCTGTCAGTCT
* * * * * * * *
6964378 TTCGAGCAAGATGAGAAGTTCTTAGGGTCATCTATAAGACCTTCGGGGAAGATGTTTTCATGTGA
448 TTCGAGCAAGATTATAAGTCCTT-GGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATG-
* * * *
6964443 TATTTGTGAAAAAATGAGAAAACGCTTTTC-AAAGTTCTTCATTT-AGTATTTTCAAAAAAT-AA
511 -ATTTGT-AAAAAATGAGAAAACGATTTTCAAAATTTC-TCATTTAAGAATTTT-AGAAAATGAA
* * *
6964505 AATTTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGG
572 AA-TTTTGAAAAGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGG
* * *
6964570 TAAGTCTTTTGGGTCATCAGTAATTTGACATTATGATTAAATCCTTCGGGTCATATATCATTCTT
636 TAAGTCCTTTGGGTCATCAGTAATTTGACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTT
* * * *
6964635 TCGAGTAAGATGATTAGTCCTTCGGGCCATCTATAAGACATTTGGGCAAGATGTTTTAATATGAT
701 TCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGAT
6964700 TTGTA
766 TTGTA
*
6964705 AAAAATGAGAAAGCGATTTTAAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
* *
6964770 AGTAATAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGT-TTTTC
66 AGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTT-
* *
6964834 AAGCCATCAATAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAG
130 GAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAG
* * * * *
6964899 TAAGATGATAAGTTCATAGGGCCATCTATAAGACCTTGGGGCAAGATGTTTTCATGTGATATATG
195 CAAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTG
* * *
6964964 GGAAAAATGAGAAAACAATTTTCATAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAA
260 TGAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAA
*
6965029 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTTCAAAATTGGTAAGTCCTTA
325 AAGTAAGAAAGT-TTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
*
6965094 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGACTTTCGAG
389 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCGAG
*
6965159 CAAGATTATAAGTCCTTGGGCCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAA
454 CAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAA
*
6965224 AAAATGAGAAAACGATTTTTAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAG
519 AAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAG
* *
6965289 TAAGAAAGTGGTTTCCAAAATTTCTTACCAAGT-GTACTATTTCCAAAATTGGTAAGTCTTTTGG
584 TAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAG-ACTATTTCCAAAATTGGTAAGTCCTTTGG
*
6965353 GTCATCAGTAAGTCATTTGACATTATGATTAAATCCTTCGGGTCATATGTCATTCTTTCGAGCAA
648 GTCATCAGT-A---ATTTGACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCAA
**
6965418 GATGATAAGTCCTTTAGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
709 GATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
*
6965480 AAAAATGAGAAA-CTGATTTTCAAAGTTTCTCATTTAGGATTTTCATAAAAATAAAAATTTTGAA
1 AAAAATGAGAAAGC-GATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAA
* * *
6965544 AAGTAAGAAAGTGATTTCCAAAGTTTCTTGCTAGGTAGACTATTTCCAAAACTGGTAAGTCCTTT
65 AAGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTT
*
6965609 GAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAG
130 GAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAG
* * *
6965674 CAAGATGATAAGTTCTTAGGGCAATCTATAAGACCTTCGGGGAAGATGTTTTCATGTGATATTTG
195 CAAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTG
*
6965739 TGAAAAATGAGAAAACGCTTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAA
260 TGAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAA
*
6965804 AAGTAAGAAAGTTTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTA
325 AAGTAAGAAAG-TTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
* * * *
6965869 AGGCTATTAGTTAGTCTTTCGAGCATGATGATTGAATACTATTGGTCATCTGTCAGACTTTCGAG
389 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCGAG
* * *
6965934 CAAGATTATAAGTCCTTGGGCCATCTAGAAGACCTTTGAGTAGGATGATTTCATATGATTTGTAA
454 CAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAA
* * ** *
6965999 AATATAAGAAAATAATTTTCAAAATTTCGCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAG
519 AAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAG
*
6966064 TAAGAAAGTGGTCTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGG
584 TAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGG
* * * * *
6966129 TCATCAGTAAGTCATTCAATATTATGATGAAATCCTTCTGGTCATCTGTCAGTCTTTCGAGCAAG
649 TCATCAGTAA-T--TT-GACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
*
6966194 ATGATAAGTTCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
710 ATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
*
6966255 GAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
* * **
6966320 AGTAAGAAAGAGATTTCCAAAGTTTCTTACCAGGTAGAATATTTCCAAAATTGGTAAGTCCTTCA
66 AGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
* * *
6966385 AGCCATTAGTAAGTCTTTCGAGCACGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGC
131 AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGC
* * ** *
6966450 AAGATAATAAGTTCTTAGGATCATCTATAAGACCTTCGAGCAAGATGTTTTCATGTGATATTTGT
196 AAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTGT
*
6966515 GAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTACAAAAAATAAAATTTTTGAAA
261 GAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAA
* *
6966580 ATTAAGAAA-TCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTATGTCCTTA
326 AGTAAGAAAGT--TTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
*
6966644 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTTA-TACTTTCGA
389 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGT-CTTTCGA
* * *
6966708 GCAAGATTATAAGTCCTTGGACCATCTCTAAGACCTTTGGGTAGGATGTTTTCATATGATTTCTA
453 GCAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTA
*
6966773 AAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTAAAAA
518 AAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAA
*
6966838 GTAAGAAAGTGGTTTCCAAAATTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGG
583 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGG
* *
6966903 GTCATCAGTAAGTCATTTGACATTATGTTTAAATCCTTCGGGTCATATGTCATTCTTTCGAGCAA
648 GTCATCAGT-A---ATTTGACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCAA
* * * * *
6966968 AATGACAAGTCCTTCAGGCCATATATAAAACATTCGGGCAGGATGTTTTAATATGATTTGTA
709 GATGATAAGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
* * *
6967030 AAAAATGAGAAA-CTGATTTTCAAAGTATCTCATTTAGGATTTTCATAAAAATAAAATTTTTGAA
1 AAAAATGAGAAAGC-GATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAA
* * *
6967094 AAATAAGAAAGAGATTTCCAAAGTTTCTTGCTAGGTAGACTATTTCCAAAACTGGTAAGTCCTTT
65 AAGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTT
*
6967159 GAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTTGAG
130 GAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAG
* * *
6967224 CAAGATGATAAGTTCTTAAGGTCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTG
195 CAAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTG
* *
6967289 TGAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTTAAAAAATAAATTTTTTGAA
260 TGAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAA
6967354 AAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
325 AAGTAAGAAAGT-TTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
* *
6967419 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGACTTTCAAG
389 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCGAG
* *
6967484 CAAGATTATAAGTCCTTGGGTCATCTATAAGACCTTTGTGTAGGATGTTTTCATATGATTTGTAA
454 CAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAA
* * *
6967549 AAAATGAGAAAGCGATTTTCAAAATTTCTAATTTAAGAATTTTAGAAAATGAACATTTTGAAAAG
519 AAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAG
* *
6967614 TAAGAAAGTGGTCTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTGGG
584 TAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGG
* *
6967679 TCATCAGTAAGTCATTCGAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGCAAG
649 TCATCAGTAA-T--TT-GACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
6967744 ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTTGAGCAAGATGATAAGTCCTTCGCCATCTATA
710 ATGAT-A------------A---GTC---C--TT---C-----G----G------GCCATCTATA
* *
6967809 AGACATTCAGGCAGGATGTTTTAATATGATTTCTA
736 AGACATTCGGGCAGGATGTTTTAATATGATTTGTA
* * * *
6967844 AAAAATGTGAAACCTATTTTCAAAGTTTCTCATTTAGGATTTTTAGAAAAATAAAAATTTTGAAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
* * *
6967909 AGTAAGAAAGAGATTTCAAAAGTTTCTTGCTAGGTAGACTATTTCCAAAACTGGTAAGTCCTTTG
66 AGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
* *
6967974 AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGT
131 AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGC
* * * * *
6968039 AAGATGATATGTCCTTTGGGCCATCTATAAGACCTACGGGTAAGATGTTTTCACGTGATATTTGT
196 AAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTGT
* * * * *
6968104 GAAAAATAAGAAAACGATTTTCAAAGTTTTTAATTTAGGATTTTCAGAAAATGAAATTTTTGAAA
261 GAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAA
*
6968169 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTTAA
326 AGTAAGAAAGT-TTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* *
6968234 GGCCATTACTAAGTTTTTCGAGCATGATGATTAAATACTATTGGTCATCTGT-AGTCTTTCGAGC
390 GGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCGAGC
* ** * * *
6968298 -------T--GTCCTTGGGCCATCTATATGAGTTTTGGGTAGGTTATTTTCATATGATCTGTAAA
455 AAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGT--A
* * *
6968354 AAAAATGAGAAAACGATTTTCAAAATTTTTCATTTAAGATTTTTAGAAAAT-TAAATTTTGAAAA
518 AAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAA
*
6968418 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAAACTATTTCCCAAAATTGGTAAGTCCTTTG
583 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTT-CCAAAATTGGTAAGTCCTTTG
* * * *
6968483 GGTCATCAGTAAGTCATTTGAGCATGATGATTAAATCCTTCGGGTCATCTGTTAGTCTTTTGAGC
647 GGTCATCAGT-A---ATTTGA-CATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGC
* * * * * * **
6968548 AAGATGATAAGTCCCTT-GGGCTATCTATAAAACCTTCTGGCATGATATTTCCATATGATATTTG
707 AAGATGATAAGT-CCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATG--ATTTG
*
6968612 AAAA
769 --TA
* * * * *
6968616 AAAAATGAGAAAGCGAGTGTCAAAGTTTCTCATTTATGATTTTCAG-AAAAT-TAAATTTCTAAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTT-TGAA
* * * * *
6968679 AAGTAAGAAA-CGATTTCTAAAGTTTTTTACCCA-GTAGACTATTTCCAAAATTGCTAAGT-CTT
65 AAGTAAGAAAGAGATTTCCAAAGTTTCTT-GCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTT
* *
6968741 TCGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTTGGGTCATCTTTCAGTCATTCG
129 T-GAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCG
* * *
6968806 AGCAAGATGATAAGTTCTTAGGGCAATCTATAAGACCTTCGGGGAAGATGTTTTCATGTGATATT
193 AGCAAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATT
* *
6968871 TGTGAAAAATGAGAAAACGCTTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATTAAATTTTTG
258 TGTGAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTG
*
6968936 AAAAGTAAGAAAGTTTTTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
323 AAAAGTAAGAAAG-TTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCT
* *
6969001 TAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGACTTTCA
387 TAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCG
* *
6969066 AGCAAGATTATAAGTCCTTGGGTCATCTATAAGACCTTTGTGTAGGATGTTTTCATATGATTTGT
452 AGCAAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGT
* * *
6969131 AAAAAATGAGAAAGCGATTTTCAAAATTTCTAATTTAAGAATTTTAGAAAATGAACATTTTGAAA
517 AAAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAA
* *
6969196 AGTAAGAAAGTGGTCTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTTGTAAGTCCTTTG
582 AGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
* *
6969261 GGTCATCAGTAAGTCATTCGAAATTATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGCA
647 GGTCATCAGTAA-T--TT-GACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCA
6969326 AGATGATAAGTCCTTCGGGTCATCTGTCATTCTTTTGAGCAAGATGATAAGTCCTTCGCCATCTA
708 AGATGAT-A------------A---GTC---C--TT---C-----G----G------GCCATCTA
* *
6969391 TAAGACATTCAGGCAGGATGTTTTAATATGATTTCTA
734 TAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
* * * *
6969428 AAAAATGTGAAACCTATTTTCAAAGTTTCTCATTTAGGATTTTTAGAAAAATAAAAATTTTGAAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
* * *
6969493 AGTAAGAAAGAGATTTCAAAAGTTTCTTGCTAGGTAGACTATTTCCAAAACTGGTAAGTCCTTTG
66 AGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
* *
6969558 AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATGTTTCAGTCATTCGAGT
131 AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGC
* * * * *
6969623 AAGATGATATGTCCTTTGGGCCATCTATAAGACCTACGGGTAAGATGTTTTCACGTGATATTTGT
196 AAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTGT
* * * * *
6969688 GAAAAATAAGAAAACGATTTTCAAAGTTTTTAATTTAGGATTTTCAGAAAATGAAATTTTTGAAA
261 GAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAA
*
6969753 AGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTAGTAAGTCCTTAA
326 AGTAAGAAAGT-TTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAA
* *
6969818 GGCCATTACTAAGTTTTTCGAGCATGATGATTAAATACTATTGGTCATCTGT-AGTCTTTCGAGC
390 GGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCGAGC
* ** * * *
6969882 -------T--GTCCTTGGGCCATCTATATGAGTTTTGGGTAGGTTATTTTCATATGATCTGTAAA
455 AAGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGT--A
* * *
6969938 AAAAATGAGAAAACGATTTTCAAAATTTTTCATTTAAGATTTTTAGAAAAT-TAAATTTTGAAAA
518 AAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAA
* *
6970002 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAAACTATTCCCAAAATTGGTAAGTCCTTTGG
583 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGG
* * * *
6970067 GTCATCAGTAAGTCATTTGAGCATGATGATTAAATCCTTCGGGTCATCTGTTAGTCTTTTGAGCA
648 GTCATCAGT-A---ATTTGA-CATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCA
* * * * * * **
6970132 AGATGATAAGTCCCTT-GGGCTATCTATAAAACCTTCTGGCATGATATTTCCATATGATATTTGA
708 AGATGATAAGT-CCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATG--ATTTG-
*
6970196 AAA
769 -TA
* * * * *
6970199 AAAAATGAGAAAGCGAGTGTCAAAGTTTCTCATTTATGATTTTCAG-AAAAT-TAAATTTCTAAA
1 AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTT-TGAA
* * * * *
6970262 AAGTAAGAAA-CGATTTCTAAAGTTTTTTACCCA-GTAGACTATTTCCAAAATTGCTAAGT-CTT
65 AAGTAAGAAAGAGATTTCCAAAGTTTCTT-GCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTT
* * * *
6970324 TCGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTTGGGTCATCTATCAGTCTTTCG
129 T-GAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCG
* * * * * * * * *
6970389 AGAAAGATGATAAGTCCCTCA-TGCCACCTATAATACCTTCGAGTAAGATGTTTCCATATGATAT
193 AGCAAGATGATAAGT-CCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATAT
** ** * * * * * *
6970453 TTGAAAAAAATATGAGAAAGTGGTTTTCAAAGTTTCTCATTTAAG-ATTTTTAGAAAATGAATTT
257 TTG-TGAAAA-ATGAGAAAACGATTTTCAAAGTTTTTCATTT-AGTATTTTCAAAAAATAAAATT
** * *
6970517 TTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAATAGACTATTTTCCAAAATTGGTAA
319 TTTGAAAAGTAAGAAAG-TTTTTCCAAAGTTTCTTACCTAGTAGACTA-TTTCCAAAATTGGTAA
* ** * * * * * * *
6970582 GTCATTCGGGCTATCAATAAGTCTTTCGAGCATGATAATTAAAT-C-A-TGCAGGCTATTTGTTA
382 GTCCTTAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTG--GTC-ATCTGTCA
* * * *
6970644 GGCTTTCGAGCAAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCT-GGCAGGATGTTTTCA
444 GTCTTTCGAGCAAGATTATAAGT-CCTTGGGCCATCTATAAGACCTT-TGGGTAGGATGTTTTCA
**** * *
6970708 TATGATTTGTAAAAAAGTGAGAAATTTTTTTTCAAAGTTTCTCATTTAAAAATTT
507 TATGATTTGTAAAAAA-TGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTT
6970763 CAAAAAAAAA
Statistics
Matches: 6017, Mismatches: 601, Indels: 418
0.86 0.09 0.06
Matches are distributed among these distances:
767 30 0.00
768 34 0.01
769 164 0.03
770 369 0.06
771 322 0.05
772 207 0.03
773 99 0.02
774 130 0.02
775 2656 0.44
776 291 0.05
777 60 0.01
778 84 0.01
779 53 0.01
780 45 0.01
781 6 0.00
782 32 0.01
783 40 0.01
784 1 0.00
786 2 0.00
787 2 0.00
788 2 0.00
789 1 0.00
790 3 0.00
791 6 0.00
792 2 0.00
793 3 0.00
794 2 0.00
795 1 0.00
796 2 0.00
797 2 0.00
799 1 0.00
804 88 0.01
805 136 0.02
806 180 0.03
807 48 0.01
808 2 0.00
809 2 0.00
810 2 0.00
812 40 0.01
813 41 0.01
814 791 0.13
815 5 0.00
816 30 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (770 bp):
AAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
AGTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTTG
AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGC
AAGATGATAAGTCCTTAGGGCCATCTATAAGACCTTCGGGCAAGATGTTTTCATGTGATATTTGT
GAAAAATGAGAAAACGATTTTCAAAGTTTTTCATTTAGTATTTTCAAAAAATAAAATTTTTGAAA
AGTAAGAAAGTTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAG
GCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTGTCAGTCTTTCGAGCA
AGATTATAAGTCCTTGGGCCATCTATAAGACCTTTGGGTAGGATGTTTTCATATGATTTGTAAAA
AATGAGAAAACGATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAAGTA
AGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGGGTC
ATCAGTAATTTGACATTATGATTAAATCCTTCGGGTCATCTGTCATTCTTTCGAGCAAGATGATA
AGTCCTTCGGGCCATCTATAAGACATTCGGGCAGGATGTTTTAATATGATTTGTA
Found at i:6967231 original size:42 final size:41
Alignment explanation
Indices: 6967171--6967250 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
6967161 GCCATCAATA
* *
6967171 AGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTC
1 AGTCTTTCGAGCAAGATGA-TAAATCCTTAAGGTCATCTTTC
* *
6967213 AGTCATTT-GAGCAAGATGATAAGTTCTTAAGGTCATCT
1 AGTC-TTTCGAGCAAGATGATAAATCCTTAAGGTCATCT
6967251 ATAAGACCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 16 0.48
42 14 0.42
43 3 0.09
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (41 bp):
AGTCTTTCGAGCAAGATGATAAATCCTTAAGGTCATCTTTC
Found at i:6967799 original size:41 final size:41
Alignment explanation
Indices: 6967702--6967799 Score: 160
Period size: 41 Copynumber: 2.4 Consensus size: 41
6967692 ATTCGAAATT
* *
6967702 ATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGCAAG
1 ATGA-TAAGTCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
*
6967744 ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTTGAGCAAG
1 ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
6967785 ATGATAAGTCCTTCG
1 ATGATAAGTCCTTCG
6967800 CCATCTATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 49 0.92
42 4 0.08
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (41 bp):
ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
Found at i:6968528 original size:42 final size:42
Alignment explanation
Indices: 6968476--6968555 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
6968466 AATTGGTAAG
* *
6968476 TCCTTTGGGTCATCAGTAAGTCATTTGAGCATGATGATTAAA
1 TCCTTCGGGTCATCAGTAAGTCATTTGAGCAAGATGATTAAA
* * *
6968518 TCCTTCGGGTCATCTGTTAGTCTTTTGAGCAAGATGAT
1 TCCTTCGGGTCATCAGTAAGTCATTTGAGCAAGATGAT
6968556 AAGTCCCTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.38
Consensus pattern (42 bp):
TCCTTCGGGTCATCAGTAAGTCATTTGAGCAAGATGATTAAA
Found at i:6969383 original size:41 final size:41
Alignment explanation
Indices: 6969286--6969383 Score: 160
Period size: 41 Copynumber: 2.4 Consensus size: 41
6969276 ATTCGAAATT
* *
6969286 ATGATTAAATCCTTCAGGTCATCTGTCATTCTTTCGAGCAAG
1 ATGA-TAAGTCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
*
6969328 ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTTGAGCAAG
1 ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
6969369 ATGATAAGTCCTTCG
1 ATGATAAGTCCTTCG
6969384 CCATCTATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 49 0.92
42 4 0.08
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (41 bp):
ATGATAAGTCCTTCGGGTCATCTGTCATTCTTTCGAGCAAG
Found at i:6970111 original size:42 final size:42
Alignment explanation
Indices: 6970059--6970138 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
6970049 AATTGGTAAG
* *
6970059 TCCTTTGGGTCATCAGTAAGTCATTTGAGCATGATGATTAAA
1 TCCTTCGGGTCATCAGTAAGTCATTTGAGCAAGATGATTAAA
* * *
6970101 TCCTTCGGGTCATCTGTTAGTCTTTTGAGCAAGATGAT
1 TCCTTCGGGTCATCAGTAAGTCATTTGAGCAAGATGAT
6970139 AAGTCCCTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.38
Consensus pattern (42 bp):
TCCTTCGGGTCATCAGTAAGTCATTTGAGCAAGATGATTAAA
Found at i:6970866 original size:14 final size:13
Alignment explanation
Indices: 6970836--6970883 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
6970826 AAAAATGGTG
6970836 AAAAAAG-GAAAA
1 AAAAAAGAGAAAA
6970848 AAAAAAGAGAAAA
1 AAAAAAGAGAAAA
*
6970861 TGAAAAAGAAGAAAA
1 -AAAAAAG-AGAAAA
*
6970876 ATAAAAGA
1 AAAAAAGA
6970884 AAATAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 7 0.23
13 6 0.20
14 11 0.37
15 6 0.20
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (13 bp):
AAAAAAGAGAAAA
Found at i:6970867 original size:28 final size:26
Alignment explanation
Indices: 6970764--6970886 Score: 83
Period size: 28 Copynumber: 4.6 Consensus size: 26
6970754 TAAAAATTTC
* *
6970764 AAAAAAAAATGAAAAAT-AAAAAAGGG
1 AAAAAAAAAAGAAAAATGAAAAAA-AG
* *
6970790 AAAAATTAGAAAG-AAAA-GAAAGAAAG
1 AAAAA--AAAAAGAAAAATGAAAAAAAG
* *
6970816 AAAAAAAAATA-AAAATGGTGAAAAAAGG
1 AAAAAAAAA-AGAAAA--ATGAAAAAAAG
6970844 AAAAAAAAAAGAGAAAATGAAAAAGAAG
1 AAAAAAAAAAGA-AAAATGAAAAA-AAG
*
6970872 AAAAATAAAAGAAAA
1 AAAAAAAAAAGAAAA
6970887 TAAATAAATG
Statistics
Matches: 75, Mismatches: 11, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
24 3 0.04
25 4 0.05
26 11 0.15
27 20 0.27
28 34 0.45
29 3 0.04
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.07
Consensus pattern (26 bp):
AAAAAAAAAAGAAAAATGAAAAAAAG
Found at i:6978231 original size:29 final size:29
Alignment explanation
Indices: 6978189--6978275 Score: 174
Period size: 29 Copynumber: 3.0 Consensus size: 29
6978179 GAAAATATGT
6978189 GTGTTTGGTCTCCAGTTATCTTAGTGTAA
1 GTGTTTGGTCTCCAGTTATCTTAGTGTAA
6978218 GTGTTTGGTCTCCAGTTATCTTAGTGTAA
1 GTGTTTGGTCTCCAGTTATCTTAGTGTAA
6978247 GTGTTTGGTCTCCAGTTATCTTAGTGTAA
1 GTGTTTGGTCTCCAGTTATCTTAGTGTAA
6978276 CAACCTCAGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.17, C:0.14, G:0.24, T:0.45
Consensus pattern (29 bp):
GTGTTTGGTCTCCAGTTATCTTAGTGTAA
Found at i:6978752 original size:18 final size:17
Alignment explanation
Indices: 6978729--6978762 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6978719 AAGAAATAAA
*
6978729 AAATATTTATTGAAAATT
1 AAATATTAATT-AAAATT
6978747 AAATATTAATTAAAAT
1 AAATATTAATTAAAAT
6978763 ACCTACGCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
AAATATTAATTAAAATT
Found at i:6978810 original size:12 final size:13
Alignment explanation
Indices: 6978795--6978823 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
6978785 AATATATACT
6978795 TAAAATAA-TAAC
1 TAAAATAATTAAC
6978807 TAAAATAATTAAC
1 TAAAATAATTAAC
6978820 TAAA
1 TAAA
6978824 TAAATAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (13 bp):
TAAAATAATTAAC
Found at i:6980170 original size:6 final size:6
Alignment explanation
Indices: 6980159--6980273 Score: 196
Period size: 6 Copynumber: 19.2 Consensus size: 6
6980149 GACACGTATT
* *
6980159 ACCACG ACCACG ACCACG ACCACG ACCACG ACCTA-G ACCTCG ACCTCG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-ACG ACCACG ACCACG
6980207 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
6980255 ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG A
6980274 GCCGAGCCGA
Statistics
Matches: 105, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
6 104 0.99
7 1 0.01
ACGTcount: A:0.32, C:0.49, G:0.17, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:6980281 original size:5 final size:5
Alignment explanation
Indices: 6980271--6980324 Score: 63
Period size: 5 Copynumber: 10.8 Consensus size: 5
6980261 ACCACGACCA
* * * * *
6980271 CGAGC CGAGC CGAGC CGAGC CGTGC CGTGC CGTGC CGTGC CGAGC CGAGA
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
6980321 CGAG
1 CGAG
6980325 ACGGACGGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.15, C:0.37, G:0.41, T:0.07
Consensus pattern (5 bp):
CGAGC
Found at i:6986204 original size:6 final size:6
Alignment explanation
Indices: 6986193--6986241 Score: 98
Period size: 6 Copynumber: 8.2 Consensus size: 6
6986183 GACACGTATT
6986193 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
6986241 A
1 A
6986242 GCCGAGCCGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.35, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:6986249 original size:5 final size:5
Alignment explanation
Indices: 6986239--6986292 Score: 72
Period size: 5 Copynumber: 10.8 Consensus size: 5
6986229 ACCACGACCA
* * * *
6986239 CGAGC CGAGC CGAGC CGAGC CGTGC CGTGC CGTGC CGAGC CGAGC CGAGA
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
6986289 CGAG
1 CGAG
6986293 ACGGACGGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.06
Consensus pattern (5 bp):
CGAGC
Found at i:6997586 original size:31 final size:31
Alignment explanation
Indices: 6997551--6997639 Score: 99
Period size: 31 Copynumber: 2.9 Consensus size: 31
6997541 CTAATGTGAC
* **
6997551 TCTTGGGCAGGCTCTGCGGCCCTGAG-ATCTT
1 TCTTGGGTAGGCTCTGCGGCCCCAAGAAT-TT
* *
6997582 TCTTGGGTAGGCCCTGTGGCCCCAAGAATTT
1 TCTTGGGTAGGCTCTGCGGCCCCAAGAATTT
**
6997613 TCTTGGGTAGGCTCTTAGGCCCCAAGA
1 TCTTGGGTAGGCTCTGCGGCCCCAAGA
6997640 TGCTCCCTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
31 47 0.96
32 2 0.04
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (31 bp):
TCTTGGGTAGGCTCTGCGGCCCCAAGAATTT
Found at i:6999116 original size:60 final size:60
Alignment explanation
Indices: 6998996--6999148 Score: 168
Period size: 60 Copynumber: 2.5 Consensus size: 60
6998986 GGTCCCTAAG
* * *
6998996 TTTTTAAACATTTTAATTTCATCCCTAAACCATGAGTAT-CATTCTAAATTAATCCTCAAAC
1 TTTTTAAACATTTCAATTTCATCCC-AAACTATGA-CATGCATTCTAAATTAATCCTCAAAC
* * * * **
6999057 -TTTTGAATATTTCATTTTTATCCCCAAACTATGACATGCATTCTAAATTGGTCAC-CAAAC
1 TTTTTAAACATTTCAATTTCAT-CCCAAACTATGACATGCATTCTAAATTAATC-CTCAAAC
6999117 TTTTTAAACATTTCAATTTCATCCCAAACTAT
1 TTTTTAAACATTTCAATTTCATCCCAAACTAT
6999149 ATGTATATAC
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
59 2 0.03
60 52 0.69
61 21 0.28
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.40
Consensus pattern (60 bp):
TTTTTAAACATTTCAATTTCATCCCAAACTATGACATGCATTCTAAATTAATCCTCAAAC
Found at i:7000672 original size:20 final size:19
Alignment explanation
Indices: 7000626--7000681 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
7000616 ACATATTCAA
* *
7000626 GTGGTATCGATACCAAGAG
1 GTGGTATCGACACCATGAG
*
7000645 GGGAGTATCGACACCATGAG
1 GTG-GTATCGACACCATGAG
7000665 GATGGTATCGACACCAT
1 G-TGGTATCGACACCAT
7000682 TGAGAACATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.90
21 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (19 bp):
GTGGTATCGACACCATGAG
Found at i:7001245 original size:46 final size:46
Alignment explanation
Indices: 7001178--7001362 Score: 334
Period size: 46 Copynumber: 4.0 Consensus size: 46
7001168 TAAAATGAAT
* *
7001178 CCATAAATAAAATGCATGAAAGGATGCATTAAGGAATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
7001224 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7001270 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAAGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7001316 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAATGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
7001362 C
1 C
7001363 ATTAAGGCAT
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 135 1.00
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.20
Consensus pattern (46 bp):
CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:7001249 original size:26 final size:25
Alignment explanation
Indices: 7001178--7001408 Score: 161
Period size: 20 Copynumber: 10.0 Consensus size: 25
7001168 TAAAATGAAT
7001178 CCATAAATAAAATGCATGAAAGGATG
1 CCATAAAT-AAATGCATGAAAGGATG
* *
7001204 -CAT---T-AAGGAATGAAAGGATG
1 CCATAAATAAATGCATGAAAGGATG
7001224 CCATAAATGAAATGCATGAAAGGATG
1 CCATAAAT-AAATGCATGAAAGGATG
*
7001250 -CAT---T-AAGGCATGAAAGGATG
1 CCATAAATAAATGCATGAAAGGATG
7001270 CCATAAATGAAATGCATGAAAGGATG
1 CCATAAAT-AAATGCATGAAAGGATG
* *
7001296 -CAT---T-AAGGCATGAAAAGATG
1 CCATAAATAAATGCATGAAAGGATG
7001316 CCATAAATGAAATGCATGAAAGGATG
1 CCATAAAT-AAATGCATGAAAGGATG
* *
7001342 -CAT---T-AAGGCATGAAATGATG
1 CCATAAATAAATGCATGAAAGGATG
*
7001362 -CAT---T-AAGGCATGAAAGGATG
1 CCATAAATAAATGCATGAAAGGATG
*
7001382 CCATAAATGAAATGTATGAAAGGATG
1 CCATAAAT-AAATGCATGAAAGGATG
7001408 C
1 C
7001409 ATTAAGGCAT
Statistics
Matches: 166, Mismatches: 15, Indels: 48
0.72 0.07 0.21
Matches are distributed among these distances:
20 76 0.46
21 12 0.07
22 4 0.02
24 4 0.02
25 12 0.07
26 58 0.35
ACGTcount: A:0.45, C:0.10, G:0.25, T:0.20
Consensus pattern (25 bp):
CCATAAATAAATGCATGAAAGGATG
Found at i:7001307 original size:66 final size:62
Alignment explanation
Indices: 7001191--7001428 Score: 201
Period size: 66 Copynumber: 3.5 Consensus size: 62
7001181 TAAATAAAAT
* *
7001191 GCATGAAAGGATGCATTAAGGAATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCAT-T-
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGCATATA
7001254 AAG
60 AAG
* *
7001257 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAAGATGCCATAA
1 GCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGCATTAAGGCATGAAAGGATG-CAT--
*
7001322 ATGAAAT
57 AT-AAAG
*
7001329 GCATGAAAGGATGCATTAAGGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAATGAAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCATTAAGGCATGAAAGGATG-CAT--AT-AAA
*
7001394 T
62 G
* *
7001395 GTATGAAAGGATGCATTAAGGCATGAATGGATGC
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGC
7001429 TATAAATGAA
Statistics
Matches: 149, Mismatches: 11, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
66 104 0.70
67 6 0.04
68 2 0.01
70 2 0.01
71 6 0.04
72 29 0.19
ACGTcount: A:0.43, C:0.10, G:0.26, T:0.21
Consensus pattern (62 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCATTAAGGCATGAAAGGATGCATATAAAG
Found at i:7001353 original size:112 final size:112
Alignment explanation
Indices: 7001237--7001440 Score: 363
Period size: 112 Copynumber: 1.8 Consensus size: 112
7001227 TAAATGAAAT
7001237 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
7001302 GGCATGAAAAGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
66 GGCATGAAAAGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
* *
7001349 GCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGTATGAAAGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
** *
7001414 GGCATGAATGGATGCTATAAATGAAAT
66 GGCATGAAAAGATGCCATAAATGAAAT
7001441 TAACGAATGG
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
112 87 1.00
ACGTcount: A:0.43, C:0.10, G:0.25, T:0.22
Consensus pattern (112 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
GGCATGAAAAGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
Found at i:7001401 original size:46 final size:46
Alignment explanation
Indices: 7001351--7001440 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
7001341 GCATTAAGGC
*
7001351 ATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGT
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGT
* *
7001397 ATGAAAGGATGCATTAAGGCATGAATGGATGCTATAAATGAAAT
1 ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAAT
7001441 TAACGAATGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24
Consensus pattern (46 bp):
ATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGT
Found at i:7001408 original size:92 final size:89
Alignment explanation
Indices: 7001191--7001382 Score: 300
Period size: 92 Copynumber: 2.2 Consensus size: 89
7001181 TAAATAAAAT
*
7001191 GCATGAAAGGATGCATTAAGGAATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
*
7001256 GGCATGAAAGGATGCCATAAATGAAAT
66 GGCATGAAAGGATGCCAT--AT-AAAG
*
7001283 GCATGAAAGGATGCATTAAGGCATGAAAAGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
*
7001348 GGCATGAAATGATG-CAT-T-AAG
66 GGCATGAAAGGATGCCATATAAAG
7001369 GCATGAAAGGATGC
1 GCATGAAAGGATGC
7001383 CATAAATGAA
Statistics
Matches: 96, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
86 16 0.17
88 1 0.01
91 3 0.03
92 76 0.79
ACGTcount: A:0.43, C:0.10, G:0.27, T:0.20
Consensus pattern (89 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA
GGCATGAAAGGATGCCATATAAAG
Found at i:7001716 original size:56 final size:54
Alignment explanation
Indices: 7001606--7001746 Score: 142
Period size: 56 Copynumber: 2.5 Consensus size: 54
7001596 AAAATTTAGT
* * * * *
7001606 AATTCATAATAAGTTTATGAATTTCCATATGGGCACTATGTCTGCAAAACTAAGAA
1 AATTCATAATAAG-TTATGAATTTCCGTATGGGAAATATATCTACAAAACTAAG-A
* *
7001662 AATTCATACTAAGTGTATGAATTTCCGTATGGGAAATATATGTACAAATA-TAAGA
1 AATTCATAATAAGT-TATGAATTTCCGTATGGGAAATATATCTACAAA-ACTAAGA
*
7001717 AGTTCATAATAA-TTAGGTGAATTTCCGTAT
1 AATTCATAATAAGTTA--TGAATTTCCGTAT
7001747 TAGTAGTGGA
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
53 2 0.03
54 1 0.01
55 25 0.35
56 43 0.60
57 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (54 bp):
AATTCATAATAAGTTATGAATTTCCGTATGGGAAATATATCTACAAAACTAAGA
Found at i:7002043 original size:68 final size:68
Alignment explanation
Indices: 7001907--7002043 Score: 175
Period size: 68 Copynumber: 2.0 Consensus size: 68
7001897 CAAGATTAAT
* * * ** *
7001907 GGCCTAACTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAATTAGATGAAAGGCTAAATAACAT
7001972 TGA
66 TGA
* * * * *
7001975 GGCCTGACTGTGCATTTGACAGGAAGGTGTCAATGATGCCAATTAGATGAACGGTTAAATAACAT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAATTAGATGAAAGGCTAAATAACAT
7002040 TGA
66 TGA
7002043 G
1 G
7002044 TAAAAGATTT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (68 bp):
GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAATTAGATGAAAGGCTAAATAACAT
TGA
Found at i:7004858 original size:100 final size:100
Alignment explanation
Indices: 7004733--7004928 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 100
7004723 TGTTAGAAAT
* * *
7004733 GTTAATAGAGTCTGGACCATAATAATGCGGGTCGTACCCCGGATCGGGACACCGCAAGGTCGTAT
1 GTTAATAGAGTCTGGACCATAATAATGCGGATCGTACCCCGGATCAGGACACCACAAGGTCGTAT
*
7004798 -AATAATT-TAAACAAATTAATAAAAAATAGTTAAGA
66 CAAT-ATTATAAAC-AATAAATAAAAAATAGTTAAGA
* * * *
7004833 GTTAGTAGAGT-TCGGACCATAATAATGTGGATCGTACCCTGGATCAGGTCACCACAAGGTCGTA
1 GTTAATAGAGTCT-GGACCATAATAATGCGGATCGTACCCCGGATCAGGACACCACAAGGTCGTA
*
7004897 TCGAATATTATAAACAATAAATAAATAATAGT
65 TC-AATATTATAAACAATAAATAAAAAATAGT
7004929 GGTTAAAGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
99 1 0.01
100 56 0.67
101 18 0.22
102 8 0.10
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (100 bp):
GTTAATAGAGTCTGGACCATAATAATGCGGATCGTACCCCGGATCAGGACACCACAAGGTCGTAT
CAATATTATAAACAATAAATAAAAAATAGTTAAGA
Found at i:7007171 original size:222 final size:222
Alignment explanation
Indices: 7006785--7007221 Score: 732
Period size: 222 Copynumber: 2.0 Consensus size: 222
7006775 TATCATCTTA
* * *
7006785 CTCGAAAGACTTATAGATGACCCGAATGATTTAAGCTCCATGCTCAAAAGACTTACTAATGGCCC
1 CTCGAAAGACTTATAAATGACCCGAAGGATTTAAGCACCATGCTCAAAAGACTTACTAATGGCCC
* *
7006850 AAAGGACTTACTAAGTAAGAAATTTTAGAAATCGTTTTCTTACTTTTCAAAAAAAATCAATTTTC
66 AAAGAACTTACTAAGTAAGAAATTTTAGAAATCGTTTTCTTACATTTCAAAAAAAATCAATTTTC
7006915 AAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTC-AGTTTTCAAAAATCATGTGAAAAC
131 AAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGA-TTTTCAAAAATCATGTGAAAAC
7006979 ATCCTACCCAAAGGTCTTATGGATGGTG
195 ATCCTACCCAAAGGTCTTATGGATGGTG
** * *
7007007 CTCGAAAGACTTATAAATGACCCGAAGGATTTAAGCACCATGCTTGAAAGACTTACTGATTGCCC
1 CTCGAAAGACTTATAAATGACCCGAAGGATTTAAGCACCATGCTCAAAAGACTTACTAATGGCCC
* * * *
7007072 GAAGAACTTACTAAGTAATAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTC
66 AAAGAACTTACTAAGTAAGAAATTTTAGAAATCGTTTTCTTACATTTCAAAAAAAATCAATTTTC
*
7007137 AAAAAAGATTTAAATGAGAAAATTTATAAATCACTTTCTCGATTTTCAAAAATCATGTGAAAACA
131 AAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGATTTTCAAAAATCATGTGAAAACA
7007202 TCCTACCCAAAGGTCTTATG
196 TCCTACCCAAAGGTCTTATG
7007222 AATGTCCCAA
Statistics
Matches: 200, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
222 199 1.00
223 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (222 bp):
CTCGAAAGACTTATAAATGACCCGAAGGATTTAAGCACCATGCTCAAAAGACTTACTAATGGCCC
AAAGAACTTACTAAGTAAGAAATTTTAGAAATCGTTTTCTTACATTTCAAAAAAAATCAATTTTC
AAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGATTTTCAAAAATCATGTGAAAACA
TCCTACCCAAAGGTCTTATGGATGGTG
Found at i:7007324 original size:241 final size:242
Alignment explanation
Indices: 7007008--7008178 Score: 716
Period size: 241 Copynumber: 4.6 Consensus size: 242
7006998 TGGATGGTGC
* * * * *
7007008 TCGAAAGACTTATAAATGACCCG-AAGGATTTAAGCACCATGCTTGAAAGACTTACTGATTGCCC
1 TCGAAAGACTTATAAATGACCCGAAAGG-TTTAAGAACCAAGCTCGAAAGACTTAATGATGGCCC
* *
7007072 GAAGAACTTACTAAGTAATAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTC
65 GAAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTC
*
7007137 AAAAAAGATTTAAATGAGAAAATTTATAAATCACTTTCTCGA-TTTTCAAAAATCATGTGAAAAC
130 AAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGACTTTTCAAAAATCATGTGAAAAC
7007201 ATCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACATATTATCTTAT
195 ATCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACATATTATCTTAT
*
7007249 TCGAAAGACTTATAGATGACCCGAAAGGTTTAAGAACCAAGCTCGAAAGACTTAATGATGGCCCG
1 TCGAAAGACTTATAAATGACCCGAAAGGTTTAAGAACCAAGCTCGAAAGACTTAATGATGGCCCG
* * * *
7007314 AAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCA
66 AAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTCA
* * * * * * * *
7007379 GAAAAGATTTAAATCAGAAACTTTGGAAATCATTTTCT-TACTTTTCAAGAAA--A-ATG--AAT
131 AAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGACTTTTCAA-AAATCATGTGAAAAC
* * ** * ** * *
7007438 TTTC-A-GAAAAGAT-TTA--AA--TCAGAAACTTTGGAAATCACTTTATCATTTT
195 ATCCTACCCAAAGGTCTTATGAATGTCCCAAA----GGACAT-A--TTATC-TTAT
* * * *
7007487 TCGAAA-ATCATGTGAAAACATCCAGCCC-AAAGGTCTTATGGATGGCCTTGATATAGTTATCAT
1 TCGAAAGA-C-T-T-ATAA-AT-GA-CCCGAAAGGT-TTA-AGA--ACC-----A-AG-------
* * *
7007550 CTTACTCGAAAGACTT-ATAGATGACCCGAAGGATTTAAGCTCCATGCTCAA-AAGACTTACTGA
42 ----CTCGAAAGACTTAAT-GATGGCCCGAAGGACTT-A-CT--AAG-T-AAGAA-A--T--T--
* * * * * * *
7007613 TTGCCCAAA-GGACTTACTAAGTAAGAAATTT-TAGAAATCGTTTTCTTACTTTTCAAAAAAAAA
89 TTG--GAAATCG-TTTTCT---T---ACATTTCAAGAAA----------A---ATCAA-------
*
7007676 TCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTC-AGTTTTCAAAAATCA
125 ----TTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGACTTTTCAAAAATCA
* * * ** * * * * **
7007740 TGTAAAAACATCCTACCCAAAGGTCTTATGGATGGCCTGATGTACTTATCATCTTGC
186 TGTGAAAACATCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACATATTATCTTAT
* * * *
7007797 TCGAAAGACTTATAAATGACCCG-AAGGATTTAAGCACCATGCTTGAAAGACTTACTGATGGCCC
1 TCGAAAGACTTATAAATGACCCGAAAGG-TTTAAGAACCAAGCTCGAAAGACTTAATGATGGCCC
*
7007861 GAAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTC
65 GAAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTC
*
7007926 AAAAAAGATTTAAATGAGAAAATTTATAAATCACTTTCTCGA-TTTTCAAAAATCATGTGAAAAC
130 AAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGACTTTTCAAAAATCATGTGAAAAC
7007990 ATCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACATA-TATC-TAT
195 ATCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACATATTATCTTAT
* *
7008036 TCGAAAGACTTATAGATGACCCGAAAGGTTTAAGAACCAAG-TCGAAAGAC-T-A-GATGGCTCG
1 TCGAAAGACTTATAAATGACCCGAAAGGTTTAAGAACCAAGCTCGAAAGACTTAATGATGGCCCG
* * * *
7008097 AAGGACTTTCTAAGTAAGAAACTTTGGAAATCGTTTTCTTAC-TTTC--CAAAAATCAACTTTCA
66 AAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTCA
*
7008159 GAAAAGATTTAAATGAGAAA
131 AAAAAGATTTAAATGAGAAA
7008179 CTCGATGGAC
Statistics
Matches: 705, Mismatches: 117, Indels: 225
0.67 0.11 0.21
Matches are distributed among these distances:
230 5 0.01
232 35 0.05
234 12 0.02
235 54 0.08
236 1 0.00
237 11 0.02
238 18 0.03
239 37 0.05
240 10 0.01
241 251 0.36
242 10 0.01
243 7 0.01
244 6 0.01
245 2 0.00
247 2 0.00
252 5 0.01
253 2 0.00
255 1 0.00
263 2 0.00
264 31 0.04
265 6 0.01
266 2 0.00
267 1 0.00
268 2 0.00
269 3 0.00
270 10 0.01
271 1 0.00
272 3 0.00
274 2 0.00
276 4 0.01
278 10 0.01
279 3 0.00
280 2 0.00
281 1 0.00
282 2 0.00
283 6 0.01
284 30 0.04
285 1 0.00
293 1 0.00
295 1 0.00
296 4 0.01
301 2 0.00
303 1 0.00
304 10 0.01
305 2 0.00
306 5 0.01
307 50 0.07
308 2 0.00
309 2 0.00
310 9 0.01
311 9 0.01
312 1 0.00
313 6 0.01
314 6 0.01
316 1 0.00
318 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (242 bp):
TCGAAAGACTTATAAATGACCCGAAAGGTTTAAGAACCAAGCTCGAAAGACTTAATGATGGCCCG
AAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTTCTTACATTTCAAGAAAAATCAATTTTCA
AAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCGACTTTTCAAAAATCATGTGAAAACA
TCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACATATTATCTTAT
Found at i:7007488 original size:64 final size:64
Alignment explanation
Indices: 7007330--7007474 Score: 290
Period size: 64 Copynumber: 2.3 Consensus size: 64
7007320 TTACTAAGTA
7007330 AGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATC
1 AGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATC
7007394 AGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATC
1 AGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATC
7007458 AGAAACTTTGGAAATCA
1 AGAAACTTTGGAAATCA
7007475 CTTTATCATT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (64 bp):
AGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATC
Found at i:7007848 original size:242 final size:240
Alignment explanation
Indices: 7007394--7008178 Score: 1081
Period size: 242 Copynumber: 3.3 Consensus size: 240
7007384 GATTTAAATC
* * * *
7007394 AGAAACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATCA
1 AGAAACTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGA
* * * * *
7007459 GAAACTTTGGAAATCACTTTATCATTTTTCGAAAATCATGTGAAAACATCC-AGCCCAAAGGTCT
66 GAAAATTTAGAAATCACTTTCTCAGTTTTCAAAAATCATGTGAAAACATCCTA-CCCAAAGGTCT
* *
7007523 TATGGATGGCCTTGATATAGTTATCATCTTACTCGAAAGACTTATAGATGACCCGAAGGATTTAA
130 TATGGATGGCC-TGATGTACTTATCATCTT-CTCGAAAGACTTATAGATGACCCGAAGGATTTAA
* * * *
7007588 GCTCCATGCTCAAAAGACTTACTGATTGCCCAAAGGACTTACTAAGTA
193 GCACCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTA
* * *
7007636 AGAAATTTTAGAAATCGTTTTCTTACTTTTCAAAAAAAAATCAATTTTCAAAAAAGATTTAAATG
1 AGAAACTTTGGAAATCGTTTTCTTACTTTTC-AAGAAAAATCAATTTTCAAAAAAGATTTAAATG
*
7007701 AGAAAATTTAGAAATCACTTTCTCAGTTTTCAAAAATCATGTAAAAACATCCTACCCAAAGGTCT
65 AGAAAATTTAGAAATCACTTTCTCAGTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCT
*
7007766 TATGGATGGCCTGATGTACTTATCATCTTGCTCGAAAGACTTATAAATGACCCGAAGGATTTAAG
130 TATGGATGGCCTGATGTACTTATCATCTT-CTCGAAAGACTTATAGATGACCCGAAGGATTTAAG
*
7007831 CACCATGCTTGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTA
194 CACCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTA
*
7007878 AGAAATTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGA
1 AGAAACTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGA
*
7007943 GAAAATTTATAAATCACTTTCTC-GATTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCT
66 GAAAATTTAGAAATCACTTTCTCAG-TTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCT
* * ** * * *
7008007 TATGAATGTCCCAAAGGACATAT-ATCTAT-TCGAAAGACTTATAGATGACCCGAAAGG-TTTAA
130 TATGGATGGCCTGATGTACTTATCATCT-TCTCGAAAGACTTATAGATGACCCG-AAGGATTTAA
* * * *
7008069 GAACCAAG-TCGAAAGAC-TA--GATGGCTCGAAGGACTTTCTAAGTA
193 GCACCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTA
* * *
7008113 AGAAACTTTGGAAATCGTTTTCTTAC-TTTC--CAAAAATCAACTTTCAGAAAAGATTTAAATGA
1 AGAAACTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGA
7008175 GAAA
66 GAAA
7008179 CTCGATGGAC
Statistics
Matches: 495, Mismatches: 43, Indels: 20
0.89 0.08 0.04
Matches are distributed among these distances:
232 33 0.07
234 4 0.01
235 48 0.10
237 2 0.00
238 8 0.02
239 33 0.07
240 9 0.02
241 110 0.22
242 150 0.30
243 97 0.20
244 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (240 bp):
AGAAACTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGA
GAAAATTTAGAAATCACTTTCTCAGTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTT
ATGGATGGCCTGATGTACTTATCATCTTCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCA
CCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTA
Found at i:7008528 original size:58 final size:55
Alignment explanation
Indices: 7008434--7008595 Score: 164
Period size: 58 Copynumber: 2.8 Consensus size: 55
7008424 AAGGACTTAC
* * * *
7008434 TCATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAAACTTTCATTT-ACAATTA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAAAAA--TTC-TTTGA-AATAA
* * *
7008492 TCATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTAATAATTCTTTGGAAATAA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTC-TTAAAAATTCTTT-GAAATAA
* *
7008549 TCATCAAGAGACTCCTAAAAATCAGGCTTAGTTTCTTTTAAAAATTC
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTC--TTAAAAATTC
7008596 ATCATGTTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
56 3 0.03
57 38 0.43
58 41 0.47
59 6 0.07
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (55 bp):
TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAAAAATTCTTTGAAATAA
Found at i:7008674 original size:55 final size:55
Alignment explanation
Indices: 7008604--7008982 Score: 438
Period size: 55 Copynumber: 6.9 Consensus size: 55
7008594 TCATCATGTT
* * **
7008604 AAGAAACCTCTGAAAATCAGACTTAGTTTATTTGAAAGCTCATTTAAAAATTGTC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * *
7008659 AAGAAACTTCCGAAAATAAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * ***
7008714 AAG-AACTTATGAAAACCAGACTTAGTTTCTTTGAAAGCTTATTTAAAAATTGCC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * *
7008768 AAGAAACTTATGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* *
7008823 AAGAAACTTCTGAAAATCAAACTTAGTTTCTTTGAAAGATCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * * * * *
7008878 AAGAAACTTCTAAAAAGCAGGCTTAGTTTCCTTGAAAGTTCATTTAAAAATAATT
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* ** * * * * *
7008933 AAGAAAATTCCAAAAATCGGACATAGTCTCTTTCAAA-TTCATTTAAAAAT
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAAT
7008983 ATAAAAAACA
Statistics
Matches: 276, Mismatches: 47, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
54 57 0.21
55 219 0.79
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (55 bp):
AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
Found at i:7008747 original size:109 final size:109
Alignment explanation
Indices: 7008614--7008937 Score: 450
Period size: 109 Copynumber: 3.0 Consensus size: 109
7008604 AAGAAACCTC
* * *
7008614 TGAAAATCAGACTTAGTTTATTTGAAAGCTCATTTAAAAATTGTCAAGAAACTTCCGAAAATAAG
1 TGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATTGTCAAGAAACTTCTGAAAATCAG
7008679 ACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAACTTA
66 ACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAACTTA
* * * *
7008723 TGAAAACCAGACTTAGTTTCTTTGAAAGCTTATTTAAAAATTGCCAAGAAACTTATGAAAATCAG
1 TGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATTGTCAAGAAACTTCTGAAAATCAG
*
7008788 ACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTC
66 ACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAG-AACTTA
* * ** * *
7008833 TGAAAATCAAACTTAGTTTCTTTGAAAGATCATTTAAAAATCATCAAGAAACTTCTAAAAAGCAG
1 TGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATTGTCAAGAAACTTCTGAAAATCAG
* * * ** * *
7008898 GCTTAGTTTCCTTGAAAGTTCATTTAAAAATAATTAAGAA
66 ACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAA
7008938 AATTCCAAAA
Statistics
Matches: 189, Mismatches: 25, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
109 98 0.52
110 91 0.48
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (109 bp):
TGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATTGTCAAGAAACTTCTGAAAATCAG
ACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAACTTA
Found at i:7008784 original size:164 final size:165
Alignment explanation
Indices: 7008604--7008928 Score: 469
Period size: 164 Copynumber: 2.0 Consensus size: 165
7008594 TCATCATGTT
* * * **
7008604 AAGAAACCTCTGAAAATCAGACTTAGTTTATTTGAAAGCTCATTTAAAAATTGTCAAGAAACTTC
1 AAGAAACCTATGAAAATCAGACTTAGTTTATTTAAAAACTCATTTAAAAATCATCAAGAAACTTC
*
7008669 CGAAAAT-AAGACTTAGTTTCTTT-AAAAACTCATTTAAAAATCATCAAG-AACTTATGAAAACC
66 CGAAAATCAA-ACTTAGTTTCTTTGAAAAA-TCATTTAAAAATCATCAAGAAACTTATAAAAACC
*
7008731 AGACTTAGTTTCTTTGAAAGCTT-ATTTAAAAATTGCC
129 AGACTTAGTTTCCTTGAAAG-TTCATTTAAAAATTGCC
* *
7008768 AAGAAACTTATGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTC
1 AAGAAACCTATGAAAATCAGACTTAGTTTATTTAAAAACTCATTTAAAAATCATCAAGAAACTTC
* * * *
7008833 TGAAAATCAAACTTAGTTTCTTTGAAAGATCATTTAAAAATCATCAAGAAACTTCTAAAAAGCAG
66 CGAAAATCAAACTTAGTTTCTTTGAAAAATCATTTAAAAATCATCAAGAAACTTATAAAAACCAG
*
7008898 GCTTAGTTTCCTTGAAAGTTCATTTAAAAAT
131 ACTTAGTTTCCTTGAAAGTTCATTTAAAAAT
7008929 AATTAAGAAA
Statistics
Matches: 143, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
164 98 0.69
165 45 0.31
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (165 bp):
AAGAAACCTATGAAAATCAGACTTAGTTTATTTAAAAACTCATTTAAAAATCATCAAGAAACTTC
CGAAAATCAAACTTAGTTTCTTTGAAAAATCATTTAAAAATCATCAAGAAACTTATAAAAACCAG
ACTTAGTTTCCTTGAAAGTTCATTTAAAAATTGCC
Found at i:7009655 original size:15 final size:15
Alignment explanation
Indices: 7009635--7009664 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7009625 GCTCTTGATC
7009635 ATTATTATCAAACTT
1 ATTATTATCAAACTT
*
7009650 ATTATTTTCAAACTT
1 ATTATTATCAAACTT
7009665 GCTCAAACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATTATCAAACTT
Found at i:7010664 original size:35 final size:35
Alignment explanation
Indices: 7010555--7010655 Score: 193
Period size: 35 Copynumber: 2.9 Consensus size: 35
7010545 CGTCACGTCC
7010555 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
*
7010590 AGTAAGGCCCTGAGCACATAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
7010625 AGTAAGGCCCTGAGCACACAGCCGAGGAACC
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACC
7010656 TCCAAGTAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 64 1.00
ACGTcount: A:0.32, C:0.29, G:0.31, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
Found at i:7010752 original size:24 final size:24
Alignment explanation
Indices: 7010739--7010832 Score: 127
Period size: 24 Copynumber: 4.0 Consensus size: 24
7010729 AAACATAATT
7010739 CAAGTCAAGTATCATATCAGAATC
1 CAAGTCAAGTATCATATCAGAATC
*
7010763 CAAGTCATGTATCATATCAGAATC
1 CAAGTCAAGTATCATATCAGAATC
* *
7010787 CATGTCAA-TATCAAATCAGAATC
1 CAAGTCAAGTATCATATCAGAATC
* * *
7010810 CAGGTCAGGTATCATAACAGAAT
1 CAAGTCAAGTATCATATCAGAAT
7010833 TCAAATTTGA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
23 20 0.33
24 41 0.67
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (24 bp):
CAAGTCAAGTATCATATCAGAATC
Found at i:7010822 original size:47 final size:48
Alignment explanation
Indices: 7010742--7010832 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
7010732 CATAATTCAA
* * *
7010742 GTCAAGTATCATATCAGAATCCAAGTCATGTATCATATCAGAATCCAT
1 GTCAAGTATCAAATCAGAATCCAAGTCAGGTATCATAACAGAATCCAT
*
7010790 GTCAA-TATCAAATCAGAATCCAGGTCAGGTATCATAACAGAAT
1 GTCAAGTATCAAATCAGAATCCAAGTCAGGTATCATAACAGAAT
7010833 TCAAATTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 34 0.87
48 5 0.13
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (48 bp):
GTCAAGTATCAAATCAGAATCCAAGTCAGGTATCATAACAGAATCCAT
Found at i:7013161 original size:18 final size:18
Alignment explanation
Indices: 7013124--7013181 Score: 109
Period size: 18 Copynumber: 3.3 Consensus size: 18
7013114 CGCCAGTCAA
7013124 CGGGTCAACGGGTC-GGT
1 CGGGTCAACGGGTCGGGT
7013141 CGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
7013159 CGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
7013177 CGGGT
1 CGGGT
7013182 TGTGACTGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
17 14 0.35
18 26 0.65
ACGTcount: A:0.10, C:0.22, G:0.50, T:0.17
Consensus pattern (18 bp):
CGGGTCAACGGGTCGGGT
Found at i:7014735 original size:14 final size:13
Alignment explanation
Indices: 7014705--7014738 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7014695 TTTATTTCAA
*
7014705 TTTTCTTTTCTCT
1 TTTTCTTTTATCT
7014718 TTTTCTTTTATGCT
1 TTTTCTTTTAT-CT
7014732 TTTTCTT
1 TTTTCTT
7014739 CTTTTCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTCTTTTATCT
Found at i:7014762 original size:19 final size:17
Alignment explanation
Indices: 7014720--7014771 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
7014710 TTTTCTCTTT
* *
7014720 TTCTTTTATGCTTTTTC
1 TTCTTTTCTTCTTTTTC
7014737 TTCTTTTCTTCTTTTTC
1 TTCTTTTCTTCTTTTTC
*
7014754 ATCTCTTTTTTTCTTTTT
1 -T-TCTTTTCTTCTTTTT
7014772 ATTTTCCCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 15 0.50
18 1 0.03
19 14 0.47
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (17 bp):
TTCTTTTCTTCTTTTTC
Found at i:7014768 original size:8 final size:8
Alignment explanation
Indices: 7014710--7014771 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
7014700 TTCAATTTTC
*
7014710 TTTTCTCT
1 TTTTCTTT
7014718 TTTTCTTT
1 TTTTCTTT
* *
7014726 TATGCTTT
1 TTTTCTTT
7014734 TTCTTCTTT
1 TT-TTCTTT
*
7014743 TCTTCTTT
1 TTTTCTTT
7014751 TTCATCTCTTT
1 TT--T-TCTTT
7014762 TTTTCTTT
1 TTTTCTTT
7014770 TT
1 TT
7014772 ATTTTCCCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 28 0.65
9 7 0.16
10 1 0.02
11 7 0.16
ACGTcount: A:0.03, C:0.19, G:0.02, T:0.76
Consensus pattern (8 bp):
TTTTCTTT
Found at i:7020472 original size:12 final size:12
Alignment explanation
Indices: 7020451--7020480 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7020441 TGCTTAAATG
*
7020451 AAATAGAATCAT
1 AAATAAAATCAT
7020463 AAATAAAATCAT
1 AAATAAAATCAT
7020475 AAATAA
1 AAATAA
7020481 CATAAGGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (12 bp):
AAATAAAATCAT
Found at i:7020755 original size:20 final size:20
Alignment explanation
Indices: 7020730--7020772 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
7020720 AAAGGTGCAT
7020730 AAAATT-AAATAACAAAAATA
1 AAAATTGAAATAA-AAAAATA
*
7020750 AAAATTGCAATAAAAAAATA
1 AAAATTGAAATAAAAAAATA
7020770 AAA
1 AAA
7020773 TGTTAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAATTGAAATAAAAAAATA
Found at i:7021271 original size:20 final size:20
Alignment explanation
Indices: 7021246--7021289 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7021236 GTATCCTAAT
7021246 TAAAATGAACAAAAGATAAA
1 TAAAATGAACAAAAGATAAA
** *
7021266 TAAAATGGTCAAAATATAAA
1 TAAAATGAACAAAAGATAAA
7021286 TAAA
1 TAAA
7021290 TAAAACCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (20 bp):
TAAAATGAACAAAAGATAAA
Found at i:7025197 original size:54 final size:53
Alignment explanation
Indices: 7025137--7025523 Score: 531
Period size: 54 Copynumber: 7.2 Consensus size: 53
7025127 TGGTTTTTGT
* * * * * * *
7025137 ACACATAGTGTCAATACAATAATTCACAAACTTATTATGAATTCCGTGGGGTGC
1 ACACATAGTGCCAATACAA-AATTCATAAACTAATTATGAATTTCTTAGGTTGC
* **
7025191 ACACATAATGCCAATATGGAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATA-CAAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
* *
7025245 ACACATAGTGTCAATACGAAAATTCATAAACAAATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATAC-AAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
* *
7025299 ACACATAGTGCCAATAAGAAAATTCATAAACTAACTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAAT-ACAAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
* ** *
7025353 ACAGATAGTATCGATACAGAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATACA-AAATTCATAAACTAATTATGAATTTCTTAGGTTGC
*
7025407 ACACATAGTGCCAATACAAAAATTCATAAACTAATTATGAATTTATTAGGTTGC
1 ACACATAGTGCCAATAC-AAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
*
7025461 ACACATAGTGCCAATACGAAAATTCATAAACTTATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATAC-AAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
7025515 ACACATAGT
1 ACACATAGT
7025524 ACCCATTCGG
Statistics
Matches: 295, Mismatches: 33, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 290 0.98
55 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (53 bp):
ACACATAGTGCCAATACAAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
Found at i:7027769 original size:356 final size:356
Alignment explanation
Indices: 7027223--7027926 Score: 918
Period size: 356 Copynumber: 2.0 Consensus size: 356
7027213 AAACGGCTCA
* *
7027223 AGCTTTTAAAACCCTAAGTAATTTCCATTGAACTCAAAATATTTGAGTGTTACCTTATAAGATAT
1 AGCTTTTAAAACCATAAGTAATTTCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATAT
* * *
7027288 GTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCTCAGGTATTCCATACAAATATT
66 GTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCTCAGGCATGCCATACAAATATA
* * * *
7027353 AAGTATTGACTACCATCACATCCTTCCATATATTCTATGTTAGTGCAAAATCAATGTTAAACATT
131 AAGTATTGACTACAATCACATCATGCCATATATTCCATGTTAGTGCAAAATCAATGTTAAACATT
* * * * * *
7027418 GATAATAATAGCATTGATTTCCTTCATATTCAAACATTGATATTCTAGTTGTTATGGACTAATGT
196 GATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTCTAATTATTATGGACTAATAT
* * * * * *
7027483 TTTCGTCTTCTTATATTAGA-GAAAATAGTTTCCTTACTTAGTCCAGTGA-AAACATCCCCAATT
261 TTTCGCCTTCTCAGATT-GACCAAAATAGTTTCCTCACTTAGTCCAG-CACAAACATCCCCAATT
**
7027546 TGGTCCTCCAGCTCCAACAAAATAAGTGACACG
324 TACTCCTCCAGCTCCAACAAAATAAGTGACACG
*
7027579 AGCTTTTAAAACTATAAGTAA-TTCCTATT-ATACTCAAAATATTTGAGTGTTACCTCATAAGAT
1 AGCTTTTAAAACCATAAGTAATTTCC-ATTGA-ACTCAAAATATTTGAGTGTTACCTCATAAGAT
* * * * * * *
7027642 ATGTTATCTACATCTAGGTACATATCCTCGATAATA-CGAGGATCCTCAGGCATGCCTTACAAAT
64 ATGTTATCGACATCAAGGCACATATCCTCAAGAATATC-AAGATCCTCAGGCATGCCATACAAAT
* * * * *
7027706 ATAAA-TGATTGATTACAATCACATCATGCCTTATATTCCATTTTGGTGCAAAA-CTAGTGTTAA
128 ATAAAGT-ATTGACTACAATCACATCATGCCATATATTCCATGTTAGTGCAAAATC-AATGTTAA
*
7027769 ACATTGATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTTTAATTATTATGGACT
191 ACATTGATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTCTAATTATTATGGACT
* * *
7027834 GATATTTTCGCCTTCTCAGATTGACCATAATAGTTTCCTCGCTTAGTCCAGCACAAACATCCCCA
256 AATATTTTCGCCTTCTCAGATTGACCAAAATAGTTTCCTCACTTAGTCCAGCACAAACATCCCCA
* *
7027899 ATTTACTCTTCCAGCTCCTACAAAATAA
321 ATTTACTCCTCCAGCTCCAACAAAATAA
7027927 TCACAAGAAA
Statistics
Matches: 299, Mismatches: 42, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
355 11 0.04
356 288 0.96
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.35
Consensus pattern (356 bp):
AGCTTTTAAAACCATAAGTAATTTCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATAT
GTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCTCAGGCATGCCATACAAATATA
AAGTATTGACTACAATCACATCATGCCATATATTCCATGTTAGTGCAAAATCAATGTTAAACATT
GATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTCTAATTATTATGGACTAATAT
TTTCGCCTTCTCAGATTGACCAAAATAGTTTCCTCACTTAGTCCAGCACAAACATCCCCAATTTA
CTCCTCCAGCTCCAACAAAATAAGTGACACG
Found at i:7032810 original size:44 final size:45
Alignment explanation
Indices: 7032690--7032815 Score: 166
Period size: 47 Copynumber: 2.8 Consensus size: 45
7032680 TATAAAATCT
*
7032690 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
7032735 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTT-TCATATATA
1 CTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCA-AAATA
* *
7032782 CTTGCCA-TTATTCCATAAGCTCATAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
7032816 GCATGGTTAC
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
44 24 0.33
45 10 0.14
46 4 0.05
47 35 0.48
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Done.