Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 30 of 62
Found at i:7032964 original size:40 final size:40
Alignment explanation
Indices: 7032920--7033041 Score: 235
Period size: 40 Copynumber: 3.0 Consensus size: 40
7032910 ACCGTAGTGC
7032920 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
7032960 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
7033000 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
7033040 TA
1 TA
7033042 TAAACCTGCA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:7036597 original size:25 final size:26
Alignment explanation
Indices: 7036503--7036587 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 26
7036493 ACCAACGTGC
* *
7036503 TAATATACATAAGGTTGTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
* * * *
7036529 TAATGCACAAAAGTTCTTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
7036555 TAATACACATAAGGTCGTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
7036581 T-ATACAC
1 TAATACAC
7036588 TTAGTGTCGT
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
25 6 0.12
26 43 0.88
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (26 bp):
TAATACACATAAGGTCGTGCCCACCA
Found at i:7036603 original size:26 final size:26
Alignment explanation
Indices: 7036503--7036604 Score: 82
Period size: 26 Copynumber: 3.9 Consensus size: 26
7036493 ACCAACGTGC
* * *
7036503 TAATATACATAAGGTTGTGCCCACCA
1 TAATACACATAAGGTCGTACCCACCA
* * * * *
7036529 TAATGCACAAAAGTTCTTGCCCACCA
1 TAATACACATAAGGTCGTACCCACCA
*
7036555 TAATACACATAAGGTCGTGCCCACCA
1 TAATACACATAAGGTCGTACCCACCA
*
7036581 T-ATACAC-TTAGTGTCGTTACCCAC
1 TAATACACATAAG-GTCG-TACCCAC
7036605 TATAGTTATG
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
24 3 0.05
25 10 0.16
26 49 0.79
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (26 bp):
TAATACACATAAGGTCGTACCCACCA
Found at i:7036820 original size:22 final size:23
Alignment explanation
Indices: 7036787--7036830 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7036777 AATACCCAAA
* *
7036787 ATATCATTCATGTTAAATATCAT
1 ATATCATTCATGATAAACATCAT
7036810 ATAT-ATTCATGATAAACATCA
1 ATATCATTCATGATAAACATCA
7036831 AATGTAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (23 bp):
ATATCATTCATGATAAACATCAT
Found at i:7045083 original size:32 final size:32
Alignment explanation
Indices: 7045045--7045124 Score: 88
Period size: 34 Copynumber: 2.4 Consensus size: 32
7045035 TGCACTATTA
* **
7045045 GAACAATAAAAAAAGTAGAACTGCTTTGGTTC
1 GAACAATAAAAAAAATAGAACAACTTTGGTTC
* *
7045077 GAACAATAACAAAACAATAGTACAATTTTGGTTC
1 GAACAATAA-AAAA-AATAGAACAACTTTGGTTC
*
7045111 GAACAGTAAAAAAA
1 GAACAATAAAAAAA
7045125 TAGCAGTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 10 0.25
33 8 0.20
34 22 0.55
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (32 bp):
GAACAATAAAAAAAATAGAACAACTTTGGTTC
Found at i:7045111 original size:34 final size:34
Alignment explanation
Indices: 7045069--7045157 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
7045059 GTAGAACTGC
* *
7045069 TTTGGTTCGAACAATAACAAAACAATAGTACAAT
1 TTTGGTTCGAACAATAAAAAAACAACAGTACAAT
* * * *
7045103 TTTGGTTCGAACAGTAAAAAAATAGCAGTATAAT
1 TTTGGTTCGAACAATAAAAAAACAACAGTACAAT
* *
7045137 TTTCGTTCGAAC-AGAAAAAAA
1 TTTGGTTCGAACAATAAAAAAA
7045158 GAAAAACAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 7 0.15
34 39 0.85
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (34 bp):
TTTGGTTCGAACAATAAAAAAACAACAGTACAAT
Found at i:7053576 original size:551 final size:550
Alignment explanation
Indices: 7052530--7053632 Score: 1888
Period size: 551 Copynumber: 2.0 Consensus size: 550
7052520 TTCTTCTTCT
7052530 TCCCATGCAAGGACCACCCTCCATAGCCAAAGGTAAACTTCAATTAATCATTTTTCCTTTCGATT
1 TCCCATGCAAGGACCACCCTCCATAGCCAAAGGTAAACTTCAATTAATCATTTTTCCTTTCGATT
*
7052595 ATGGGTTGTTTTCACAACCTTAAGTGATATGTAAGCTAACAGAGGGTTAAATAGGATTAAAACAA
66 ATGGGTTGTTTTCACAAACTTAAGTGATATGTAAGCTAACAGAGGGTTAAATAGGATT-AAACAA
* *
7052660 ATATATGGATGAAATATTAGAGATTTAAGAAAATGGGTTTTGAAATGATATGCTAATATATGAGT
130 AGATATGGATGAAATATTAGAGATTTAAGAAAATGGGTTTTAAAATGATATGCTAATATATGAGT
*
7052725 GTTTATGGATGTTTATTGGTAGATTTGACTTGTCAAAGAGGTAAATGAGAGATTGGAAGCATTGG
195 GTTTATGAATGTTTATTGGTAGATTTGACTTGTCAAAGAGGTAAATGAGAGATTGGAAGCATTGG
7052790 ATAGGATTAAGAACATATTAGAAAAAGTAGTGTGATTCTTAGAATTGAATGTTCTTGGAAGATTT
260 ATAGGATTAAGAACATATTAGAAAAAGTAGTGTGATTCTTAGAATTGAATGTTCTTGGAAGATTT
* * *
7052855 TAGATGTTTTAAGAAGTTAATGAAGGAAAGTTAGTATGAATAGGCAAAGAAGAGTTTAATAGTAT
325 TAGATGTTTTAAGAACTAAATGAAGGAAAGTTAGTATGAATAGGAAAAGAAGAGTTTAATAGTAT
* ** *
7052920 TGTATGATGTAATCATAACGAAATTTGACCCCATTTGGGTGATAATCGGGTTGAAAATTGGAAAT
390 TGTATGATGTAATAATAACGAAATTTGACCCCATTTGGGTGATAATCAAGTTGAAAACTGGAAAT
* * *
7052985 TCTGGGCACGGGTATCCGTACTGATAGAACAATACCAATACTATAGGCTTAAAATCAGTATTATC
455 TCTGGGCACGAGTATCCGTACTGATAGAACAATACCAATACTATAGGCTTAAAATCAGCATAATC
* *
7053050 TGTTGAGCAGTATCGATGCCGATTCAAGTGG
520 TATTGAGCAGTATCGATACCGATTCAAGTGG
*
7053081 TCCCGTGCAAGGACCACCCTCCATAGCCAAAGGTAAACTTCAATTAATCAGTTTTTCCTTTCGAT
1 TCCCATGCAAGGACCACCCTCCATAGCCAAAGGTAAACTTCAATTAATCA-TTTTTCCTTTCGAT
*
7053146 TATGGGTTGTTTTTACAAACTTAAGTGATATGTAAGCTAA-AGGGAGGGTTAAATAGGATT-AAC
65 TATGGGTTGTTTTCACAAACTTAAGTGATATGTAAGCTAACA--GAGGGTTAAATAGGATTAAAC
* *
7053209 AAAGATATGGATGAAATATTATAGATTTAAGAAAATGGGTTTTAAAATGATATGTTAATATATGA
128 AAAGATATGGATGAAATATTAGAGATTTAAGAAAATGGGTTTTAAAATGATATGCTAATATATGA
7053274 GTGTTTATGAATGTTTATTGGTAGATTTGACTTGTCAAAGAGGTAAATGAGAGATTGGAAGCATT
193 GTGTTTATGAATGTTTATTGGTAGATTTGACTTGTCAAAGAGGTAAATGAGAGATTGGAAGCATT
*
7053339 GGATAGGATTAAGAACATATTAGAAAAAGTAGTGTGATTCTTAGAATTGAATGTTTTTGGAAGAT
258 GGATAGGATTAAGAACATATTAGAAAAAGTAGTGTGATTCTTAGAATTGAATGTTCTTGGAAGAT
* * *
7053404 TTTAGATGTTTTAAGAAACTAAATGAAGGAAAGTT-TTATGAATAGGAAAAGAATAGTTTACTAG
323 TTTAGATGTTTTAAG-AACTAAATGAAGGAAAGTTAGTATGAATAGGAAAAGAAGAGTTTAATAG
*
7053468 TATTGTATGGTGTAATAATAACGAAATTTGACCCCATTTGGGTGATAATCAAGTTGAAAACTGGA
387 TATTGTATGATGTAATAATAACGAAATTTGACCCCATTTGGGTGATAATCAAGTTGAAAACTGGA
*
7053533 AATTCTGGGCACGAGTATCGGTACTGATAGAACAATACCAATACTATAGGCTTAAAATCAGCATA
452 AATTCTGGGCACGAGTATCCGTACTGATAGAACAATACCAATACTATAGGCTTAAAATCAGCATA
* *
7053598 ATCTATTGAGTAGTGTCGATACCGATTCAAGTGG
517 ATCTATTGAGCAGTATCGATACCGATTCAAGTGG
7053632 T
1 T
7053633 ATCGATACCA
Statistics
Matches: 520, Mismatches: 28, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
551 434 0.83
552 69 0.13
553 17 0.03
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (550 bp):
TCCCATGCAAGGACCACCCTCCATAGCCAAAGGTAAACTTCAATTAATCATTTTTCCTTTCGATT
ATGGGTTGTTTTCACAAACTTAAGTGATATGTAAGCTAACAGAGGGTTAAATAGGATTAAACAAA
GATATGGATGAAATATTAGAGATTTAAGAAAATGGGTTTTAAAATGATATGCTAATATATGAGTG
TTTATGAATGTTTATTGGTAGATTTGACTTGTCAAAGAGGTAAATGAGAGATTGGAAGCATTGGA
TAGGATTAAGAACATATTAGAAAAAGTAGTGTGATTCTTAGAATTGAATGTTCTTGGAAGATTTT
AGATGTTTTAAGAACTAAATGAAGGAAAGTTAGTATGAATAGGAAAAGAAGAGTTTAATAGTATT
GTATGATGTAATAATAACGAAATTTGACCCCATTTGGGTGATAATCAAGTTGAAAACTGGAAATT
CTGGGCACGAGTATCCGTACTGATAGAACAATACCAATACTATAGGCTTAAAATCAGCATAATCT
ATTGAGCAGTATCGATACCGATTCAAGTGG
Found at i:7053674 original size:20 final size:19
Alignment explanation
Indices: 7053628--7053682 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
7053618 ACCGATTCAA
7053628 GTGGTATCGATACCAAGAG
1 GTGGTATCGATACCAAGAG
*
7053647 GGGAGTATCGATA-CAATGAG
1 GTG-GTATCGATACCAA-GAG
*
7053667 GATGGTATCGACACCA
1 G-TGGTATCGATACCA
7053683 TTGAGCACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 5 0.17
20 21 0.72
21 3 0.10
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (19 bp):
GTGGTATCGATACCAAGAG
Found at i:7054252 original size:26 final size:25
Alignment explanation
Indices: 7054181--7054467 Score: 202
Period size: 20 Copynumber: 12.4 Consensus size: 25
7054171 TAAAATGAAT
*
7054181 CCATAAATAAAATGCATGAAAGGATG
1 CCATAAAT-GAATGCATGAAAGGATG
*
7054207 -CAT---T-AAGGCATGAAAGGATG
1 CCATAAATGAATGCATGAAAGGATG
* *
7054227 CCATAAATGAAATGCATGAGATGATG
1 CCATAAATG-AATGCATGAAAGGATG
*
7054253 -CAT---T-AAGGCATGAAAGGATG
1 CCATAAATGAATGCATGAAAGGATG
7054273 CCATAAATGAAATGCATGAAAGGAT-
1 CCATAAATG-AATGCATGAAAGGATG
* *
7054298 TCAT---T-AAGGCATGAAAGGATG
1 CCATAAATGAATGCATGAAAGGATG
*
7054319 CCATAAATGTAATGCATGAAATGATG
1 CCATAAATG-AATGCATGAAAGGATG
*
7054345 -CAT---T-AAGGCATGAAAGGATG
1 CCATAAATGAATGCATGAAAGGATG
7054365 CCATAAATGAAATGCATGAAAGGATG
1 CCATAAATG-AATGCATGAAAGGATG
*
7054391 -CATTAA-G-A--CATGAAAGGATG
1 CCATAAATGAATGCATGAAAGGATG
*
7054411 CCATAAATGAAATGTATGAAAGGATG
1 CCATAAATG-AATGCATGAAAGGATG
*
7054437 -CAT---T-AAGGCATGAAAGGATG
1 CCATAAATGAATGCATGAAAGGATG
7054457 CCATAAATGAA
1 CCATAAATGAA
7054468 ATTAACGAAT
Statistics
Matches: 205, Mismatches: 21, Indels: 71
0.69 0.07 0.24
Matches are distributed among these distances:
20 82 0.40
21 20 0.10
22 7 0.03
24 7 0.03
25 22 0.11
26 67 0.33
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (25 bp):
CCATAAATGAATGCATGAAAGGATG
Found at i:7054253 original size:46 final size:46
Alignment explanation
Indices: 7054181--7054469 Score: 506
Period size: 46 Copynumber: 6.3 Consensus size: 46
7054171 TAAAATGAAT
*
7054181 CCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
7054227 CCATAAATGAAATGCATGAGATGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7054273 CCATAAATGAAATGCATGAAAGGATTCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
7054319 CCATAAATGTAATGCATGAAATGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7054365 CCATAAATGAAATGCATGAAAGGATGCATTAAGACATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7054411 CCATAAATGAAATGTATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
7054457 CCATAAATGAAAT
1 CCATAAATGAAAT
7054470 TAACGAATGG
Statistics
Matches: 229, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 229 1.00
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (46 bp):
CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:7054745 original size:56 final size:56
Alignment explanation
Indices: 7054635--7054757 Score: 142
Period size: 56 Copynumber: 2.2 Consensus size: 56
7054625 AAAATTTTGT
* * * * *
7054635 AATTCATAATAAGTTTATGAATTTCCATATGGGCACTATGTGTGCAAAATTAAGAA
1 AATTCATAATAAGTGTATGAATTTCCATATGGGAAATATATGTACAAAATTAAGAA
* * *
7054691 AATTCATACTAAGTGTATGAATTTTCGTATGGGAAATATATGTAC-AAATATAAG-A
1 AATTCATAATAAGTGTATGAATTTCCATATGGGAAATATATGTACAAAAT-TAAGAA
*
7054746 AGTTCATAATAA
1 AATTCATAATAA
7054758 TTAGGTGAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
55 15 0.27
56 41 0.73
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.34
Consensus pattern (56 bp):
AATTCATAATAAGTGTATGAATTTCCATATGGGAAATATATGTACAAAATTAAGAA
Found at i:7055072 original size:68 final size:68
Alignment explanation
Indices: 7054936--7055072 Score: 177
Period size: 68 Copynumber: 2.0 Consensus size: 68
7054926 CAAGATTAAT
* * * * * *
7054936 GGCCTGACTGTGCATTTGACAGAAATGTGTCAATCATGTCAGTTAGATGAAAGACTAAGTTCCTT
1 GGCCTGACTGTGCAATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGACTAAATACCGT
7055001 TGA
66 TGA
* * *
7055004 GGCCTGACTGTGCAATTGACAGGAAGGTGTCAATGATGCCAGTTAGATGAACAG-TTAAATACCG
1 GGCCTGACTGTGCAATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAA-AGACTAAATACCG
7055068 TTGA
65 TTGA
7055072 G
1 G
7055073 TAAAAGATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 57 0.97
69 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (68 bp):
GGCCTGACTGTGCAATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGACTAAATACCGT
TGA
Found at i:7055178 original size:80 final size:81
Alignment explanation
Indices: 7055014--7055178 Score: 174
Period size: 80 Copynumber: 2.0 Consensus size: 81
7055004 GGCCTGACTG
* * * *
7055014 TGCAATTGACAGGAAGGTGTCAATGATGCCAGTTAGATGAACAGTTAAATACCGTTGAGTAAAAG
1 TGCAATTGACAGAAAGGTGTCAATCATGCCAATTAGATGAACAGTTAAATACCGTTAAGTAAAAG
** * * *
7055079 ATTTATGGCCTAGCTA
66 ATAGATGGCATAACAA
* * *
7055095 TGCACTTGACAGAAAGG-GTCAATCATGCCAATTAGATGAA-AGGTTAAATGCCTTTAAGTAAAA
1 TGCAATTGACAGAAAGGTGTCAATCATGCCAATTAGATGAACA-GTTAAATACCGTTAAGTAAAA
*
7055158 GACTAGAT-GTATAACAA
65 GA-TAGATGGCATAACAA
7055175 TGCA
1 TGCA
7055179 TAACGTTGTA
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
79 1 0.01
80 50 0.72
81 18 0.26
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (81 bp):
TGCAATTGACAGAAAGGTGTCAATCATGCCAATTAGATGAACAGTTAAATACCGTTAAGTAAAAG
ATAGATGGCATAACAA
Found at i:7056082 original size:421 final size:421
Alignment explanation
Indices: 7055295--7056132 Score: 1372
Period size: 421 Copynumber: 2.0 Consensus size: 421
7055285 TATGAATGGA
*
7055295 TGCTATCAATGAAAATAAAGAATAAAGAATAAAGAGATAAATGGAAAAGAAAAATATAAAGGAAG
1 TGCTATCAATGAAAATAAAGAATAAAGAATAAAGAGATAAATAGAAAAGAAAAATATAAAGGAAG
* * * *
7055360 ATAGGTATGCTAGGCATACTAAAAATAATTAAGATATTTGTGAATGGAATGCGGTTTAAATGAGG
66 ATAGGTATGCTAGGCATACAAAAAATAATTAAGATAATTGTGAATGGAATACAGTTTAAATGAGG
* * *
7055425 AGGATTATAGGATCCTTAAAGAATATATGATTTAGTACGAAGTAAATAAATATGAAATACCTATG
131 AGGATTATAGGATCCTTAAAGAATATACGATTTAGTACGAACTAAATAAATATCAAATACCTATG
*
7055490 TATACACAAAGGTTACTTTACAATATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCC
196 TATACACAAAGCTTACTTTACAATATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCC
** * * *
7055555 ACGTGTAGGTAAAAGTGGAGACAAATTAAATAAGGAGTGCAACAGTAGCAACATATATCATCTGT
261 ACACGTAGGTAAAAGCGGAGACAAATTAAATAAGGAGTGCAACAGTAACAACAGATATCATCTGT
* * * *
7055620 TGAGGTTGATTCTCATGAGTAACGGTAGGATAATAATGTTTATTTTGAACAATTGCTGGCATGTA
326 TAAGGTTGACTCTCATGAGTAACGATAGGAAAATAATGTTTATTTTGAACAATTGCTGGCATGTA
7055685 ATCAAATTTAAAGAAAAATGCTCTGTATTGT
391 ATCAAATTTAAAGAAAAATGCTCTGTATTGT
* * *
7055716 TGCTATCAATGAAAATAAAGAATAATGAATAAATAGATAAATAGTAAAGAAAAATATAAAGGAAG
1 TGCTATCAATGAAAATAAAGAATAAAGAATAAAGAGATAAATAGAAAAGAAAAATATAAAGGAAG
* * *
7055781 ATAGGTATTCTAGGCATACAAAAAATAATTAAGATAATTGTGAATGGATTACAGTTTATATGAGG
66 ATAGGTATGCTAGGCATACAAAAAATAATTAAGATAATTGTGAATGGAATACAGTTTAAATGAGG
*
7055846 AGGATTATAGGATCCTTAAAGAATATACGATTTAGTACGAACTAAATAAATATCACATACCTATG
131 AGGATTATAGGATCCTTAAAGAATATACGATTTAGTACGAACTAAATAAATATCAAATACCTATG
* * *
7055911 TATACACAGAGCTTACTTTACAATATTATGTCTCACTAAGTAAATACTTAATGTGTGTTGTTTCC
196 TATACACAAAGCTTACTTTACAATATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCC
*
7055976 ACACGTAGGTAAAAGCGGAGACAAATTAAATAAGGAGTGCACCAGTAACAACAGATATCATCTGT
261 ACACGTAGGTAAAAGCGGAGACAAATTAAATAAGGAGTGCAACAGTAACAACAGATATCATCTGT
*
7056041 TAAGGTTGACTCTCATCG-GTAACGATAGGAAAATCATGTTTATTTTGAACAATTGCTGGCATGT
326 TAAGGTTGACTCTCAT-GAGTAACGATAGGAAAATAATGTTTATTTTGAACAATTGCTGGCATGT
* *
7056105 AATCAAATTTAAAGAACAATTCTCTGTA
390 AATCAAATTTAAAGAAAAATGCTCTGTA
7056133 ATGTATATAA
Statistics
Matches: 384, Mismatches: 32, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
421 383 1.00
422 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (421 bp):
TGCTATCAATGAAAATAAAGAATAAAGAATAAAGAGATAAATAGAAAAGAAAAATATAAAGGAAG
ATAGGTATGCTAGGCATACAAAAAATAATTAAGATAATTGTGAATGGAATACAGTTTAAATGAGG
AGGATTATAGGATCCTTAAAGAATATACGATTTAGTACGAACTAAATAAATATCAAATACCTATG
TATACACAAAGCTTACTTTACAATATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCC
ACACGTAGGTAAAAGCGGAGACAAATTAAATAAGGAGTGCAACAGTAACAACAGATATCATCTGT
TAAGGTTGACTCTCATGAGTAACGATAGGAAAATAATGTTTATTTTGAACAATTGCTGGCATGTA
ATCAAATTTAAAGAAAAATGCTCTGTATTGT
Found at i:7059998 original size:2 final size:2
Alignment explanation
Indices: 7059991--7060044 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
7059981 TGAAACATGC
7059991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7060033 AT AT AT AT AT AT
1 AT AT AT AT AT AT
7060045 GTTTCATATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7060773 original size:20 final size:20
Alignment explanation
Indices: 7060748--7060788 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7060738 CATCCGAATC
7060748 AAAAT-GAACAAAATATAAAT
1 AAAATGGAA-AAAATATAAAT
*
7060768 AAAATGGTAAAAATATAAAT
1 AAAATGGAAAAAATATAAAT
7060788 A
1 A
7060789 GAAGCATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (20 bp):
AAAATGGAAAAAATATAAAT
Found at i:7063411 original size:479 final size:480
Alignment explanation
Indices: 7062353--7063608 Score: 1716
Period size: 479 Copynumber: 2.6 Consensus size: 480
7062343 CGGATGGCCT
** * * * *
7062353 GAAGGATTTGGGCTTCATGCTCGAAAGACTTGCTGATGGCCCGAAT-AACTTAATAAGTAAGAAA
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCG-ATGGACTTACTAAGTAAGAAA
*
7062417 CTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATCATAAAC
65 CTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAAT-AGAAAC
7062482 TTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGA
129 TTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGA
* * *
7062547 TGGCCCGATGTACTTATCATCTTACTCGAAAGACTTATAGATGACCC-AAATGATTTAATCACCA
194 TGGCCCGAAGGACTTATCATCTTACTCGAAAGACTTATAGATGACCCGAAA-GATTTAAGCACCA
* * *
7062611 TGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTATGTAAGAAATTTTAGAAATCGTTTTCT
258 TGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTAGAAATCGTTTTCT
* * *
7062676 TACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTC
323 TACTTTTC-ACAAAAATCAACTTTCAAAAAAGATTTAAATGAGAAAATCTAGAAATCACTTTCTC
* *
7062741 AGTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCTGATGTACTTATC
387 AGTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCTGAAGGACTTATC
* *
7062806 ATCTTGCTCGAAAGACTTATAAATGACCC
452 ATCATGCTCAAAAGACTTATAAATGACCC
* * * *
7062835 GAAGGATTTAAGCACCATGCTTGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAAT
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGATGGACTTACTAAGTAAGAAAC
* * * *
7062900 TTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAAT
66 TTTGGAAATCATTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAAT-AGAAACT
** * * * *
7062965 TTATAAATCACTTTCTCGA-TTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGAA
130 TTGGAAATCGCTTTCTC-ATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGA
* * * * * * * *
7063029 TGTCCCAAAGGACATATTATCTTATTCGAAAGACTTATAGATGACCCGAAAGGTTTAAGAACCAA
194 TGGCCCGAAGGACTTATCATCTTACTCGAAAGACTTATAGATGACCCGAAAGATTTAAGCACCAT
* *
7063094 GCTCGAAAGACTTAATGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTT
259 GCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTAGAAATCGTTTTCTT
* * * *
7063159 AC-TTTC-CAAAAATCAACTTTCAGAAAAGATTTAAATGAGAAACTCT-GGAATCCGCTTTCTCA
324 ACTTTTCACAAAAATCAACTTTCAAAAAAGATTTAAATGAGAAAATCTAGAAAT-CACTTTCTCA
* ** * *
7063221 TTTTTTGAAAATCATGTGAAAACATCCTGCCCGAAGGTCTTATGGATGGTCC-GAAGGACTTATC
388 GTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATGG-CCTGAAGGACTTATC
* *
7063285 ATCATGCTCAAAAGACTTATAGATGACCT
452 ATCATGCTCAAAAGACTTATAAATGACCC
* * *
7063314 GAATGATTTAAGCATCATGCTCGAAAGACTTATTGATGGCTCGATGGACTTACTAAGTAAGAAAC
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGATGGACTTACTAAGTAAGAAAC
* * *
7063379 CTTGGAAATCATTTTCTTACTTTTCAAGAAAAATTAATTTTGAGAAAAGATTTAAATATGAAACT
66 TTTGGAAATCATTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATA-GAAACT
* * * **
7063444 TTGGAAATCGCTTCCTCATTTTTTGAAAATCATGTGAAAACATCATGCCTGAAGGTCTTATGGAT
130 TTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGAT
* * **
7063509 GGCTCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACTAGAAAGATTTAAGCACCATG
195 GGCCCGAAGGACTTATCATCTTACTCGAAAGACTTATAGATGACCCGAAAGATTTAAGCACCATG
* * **
7063574 CTTGAAAGACTTACTAATAACCCGAAGGACTTACT
260 CTCGAAAGACTTACTGATGGCCCGAAGGACTTACT
7063609 CATCAAGAAA
Statistics
Matches: 670, Mismatches: 97, Indels: 17
0.85 0.12 0.02
Matches are distributed among these distances:
478 6 0.01
479 373 0.56
480 2 0.00
481 5 0.01
482 280 0.42
483 4 0.01
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (480 bp):
GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGATGGACTTACTAAGTAAGAAAC
TTTGGAAATCATTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATAGAAACTT
TGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATG
GCCCGAAGGACTTATCATCTTACTCGAAAGACTTATAGATGACCCGAAAGATTTAAGCACCATGC
TCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTAGAAATCGTTTTCTTAC
TTTTCACAAAAATCAACTTTCAAAAAAGATTTAAATGAGAAAATCTAGAAATCACTTTCTCAGTT
TTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCTGAAGGACTTATCATCA
TGCTCAAAAGACTTATAAATGACCC
Found at i:7063620 original size:241 final size:241
Alignment explanation
Indices: 7062368--7063608 Score: 1668
Period size: 241 Copynumber: 5.2 Consensus size: 241
7062358 ATTTGGGCTT
* ** *
7062368 CATGCTCGAAAGACTTGCTGATGGCCCGAATAACTTAATAAGTAAGAAACTTTGGAAATCATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * *
7062433 CTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATCATAAACTTTGGAAATCGCTTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCGCTTTC
* *
7062498 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGATGTACTTA
131 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTA
* * *
7062563 TCATCTTACTCGAAAGACTTATAGATGACCCA-AATGATTTAATCAC
196 TCATCTTGCTCGAAAGACTTATAGATGA-CCAGAAAGATTTAAGCAC
* * * * *
7062609 CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTATGTAAGAAATTTTAGAAATCGTTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * * *
7062674 CTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCGCTTTC
* * * * * *
7062739 TCAGTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCTGATGTACTTA
131 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTA
* * *
7062804 TCATCTTGCTCGAAAGACTTATAAATGACCCGAAGGATTTAAGCAC
196 TCATCTTGCTCGAAAGACTTATAGATGACCAGAAAGATTTAAGCAC
* * *
7062850 CATGCTTGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAATTTTGGAAATCGTTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * ** *
7062915 CTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTATAAATCACTTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCGCTTTC
* * * * * *
7062980 TCGA-TTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGAATGTCCCAAAGGACAT
131 TC-ATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTT
* ** * * *
7063044 ATTATCTTATTCGAAAGACTTATAGATGACCCGAAAGGTTTAAGAAC
195 ATCATCTTGCTCGAAAGACTTATAGATGACCAGAAAGATTTAAGCAC
* * *
7063091 CAAGCTCGAAAGACTTAATGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * *
7063156 CTTAC-TTTC--CAAAAATCAACTTTCAGAAAAGATTTAAATGAGAAACTCTGG-AATCCGCTTT
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAAT-CGCTTT
* * *
7063217 CTCATTTTTTGAAAATCATGTGAAAACATCCTGCCCGAAGGTCTTATGGATGGTCCGAAGGACTT
130 CTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTT
* * * * *
7063282 ATCATCATGCTCAAAAGACTTATAGATGACCTGAATGATTTAAGCAT
195 ATCATCTTGCTCGAAAGACTTATAGATGACCAGAAAGATTTAAGCAC
* * * *
7063329 CATGCTCGAAAGACTTATTGATGGCTCGATGGACTTACTAAGTAAGAAACCTTGGAAATCATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * *
7063394 CTTACTTTTCAAGAAAAATTAATTTTGAGAAAAGATTTAAAT-ATGAAACTTTGGAAATCGCTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGA-GAAACTTTGGAAATCGCTTT
* * ** *
7063458 CTCATTTTTTGAAAATCATGTGAAAACATCATGCCTGAAGGTCTTATGGATGGCTCGAAGGACTT
130 CTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTT
*
7063523 ATCATCTTGCTCGAAAGACTTATAGATGACTAGAAAGATTTAAGCAC
195 ATCATCTTGCTCGAAAGACTTATAGATGACCAGAAAGATTTAAGCAC
* * **
7063570 CATGCTTGAAAGACTTACTAATAACCCGAAGGACTTACT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACT
7063609 CATCAAGAAA
Statistics
Matches: 888, Mismatches: 103, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
237 4 0.00
238 195 0.22
239 4 0.00
240 7 0.01
241 674 0.76
242 4 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (241 bp):
CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCGCTTTC
TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTA
TCATCTTGCTCGAAAGACTTATAGATGACCAGAAAGATTTAAGCAC
Found at i:7063702 original size:58 final size:55
Alignment explanation
Indices: 7063608--7063769 Score: 173
Period size: 58 Copynumber: 2.8 Consensus size: 55
7063598 AAGGACTTAC
* * * *
7063608 TCATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAAACTTTCATTT-ACAATTA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAAAAA--TTC-TTTGA-AATAA
* * *
7063666 TCATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTAACAATTCTTTGGAAATAA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTC-TTAAAAATTCTTT-GAAATAA
*
7063723 TCATCAAGAGACCCCTAAAAATCAGGCTTAGTTTCTTTTAAAAATTC
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTC--TTAAAAATTC
7063770 ATCATGTTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
56 3 0.03
57 39 0.44
58 41 0.46
59 6 0.07
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (55 bp):
TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAAAAATTCTTTGAAATAA
Found at i:7063848 original size:55 final size:55
Alignment explanation
Indices: 7063778--7064158 Score: 438
Period size: 55 Copynumber: 6.9 Consensus size: 55
7063768 TCATCATGTT
* * * **
7063778 AAGAAACCTCAGAAAATCAGACTTAGTTTATTTGAAAGCTCATTTAAAAATTGTC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * *
7063833 AAGAAACTTCCGAAAATAAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * ***
7063888 AAGAAACTTATGAAAACCAGACTTAGTTTCTTTGAAAGCTTATTTAAAAATTGCC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * *
7063943 AAGAAACTTATGAAAATCATACTTAGTTTCTTTAAAAACTCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
*
7063998 AAGAAACTTCTGAAAATCAAACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* * * * * * *
7064053 AAGAAACTTCTAAAAAGCAGGCTTAGTTTCCTTGAAAGTTCATTTAAAAATAATT
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
* ** * * * * **
7064108 AAGAAAATTCCAAAAATCGGACATAGTCTCTTTCAAAATTCATTTAAAAAT
1 AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAAT
7064159 ATAAAAAACC
Statistics
Matches: 278, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 278 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (55 bp):
AAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATC
Found at i:7065783 original size:2 final size:2
Alignment explanation
Indices: 7065776--7065802 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7065766 TTTTTAAAAC
7065776 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7065803 CCCCCATCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7065937 original size:35 final size:35
Alignment explanation
Indices: 7065864--7065938 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
7065854 CGTCACGTCC
* **
7065864 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCAAGGAACCGCCA
*
7065899 AGTAAGGCCCTGAGCACACAGCCAAGGAACCTCCA
1 AGTAAGGCCCTGAGCACACAGCCAAGGAACCGCCA
7065934 AGTAA
1 AGTAA
7065939 TCTTCCTCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.29, G:0.27, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCAAGGAACCGCCA
Found at i:7066044 original size:24 final size:24
Alignment explanation
Indices: 7066017--7066107 Score: 130
Period size: 24 Copynumber: 3.8 Consensus size: 24
7066007 CATAATTCAA
7066017 GTCAAGTATCATATCAGAATCCAG
1 GTCAAGTATCATATCAGAATCCAG
* *
7066041 GTCATGTATCATATCAGAATCCAT
1 GTCAAGTATCATATCAGAATCCAG
*
7066065 GTCAA-TATCAGATCAGAATCCAG
1 GTCAAGTATCATATCAGAATCCAG
* *
7066088 GTCAGGTATCATAACAGAAT
1 GTCAAGTATCATATCAGAAT
7066108 TCAAATTTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
23 20 0.34
24 38 0.66
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (24 bp):
GTCAAGTATCATATCAGAATCCAG
Found at i:7066087 original size:47 final size:48
Alignment explanation
Indices: 7066017--7066107 Score: 148
Period size: 47 Copynumber: 1.9 Consensus size: 48
7066007 CATAATTCAA
* * *
7066017 GTCAAGTATCATATCAGAATCCAGGTCATGTATCATATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAGGTCAGGTATCATAACAGAATCCAT
7066065 GTCAA-TATCAGATCAGAATCCAGGTCAGGTATCATAACAGAAT
1 GTCAAGTATCAGATCAGAATCCAGGTCAGGTATCATAACAGAAT
7066108 TCAAATTTGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 35 0.88
48 5 0.12
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (48 bp):
GTCAAGTATCAGATCAGAATCCAGGTCAGGTATCATAACAGAATCCAT
Found at i:7068432 original size:17 final size:18
Alignment explanation
Indices: 7068407--7068479 Score: 114
Period size: 17 Copynumber: 4.2 Consensus size: 18
7068397 AACGGTTAAC
7068407 GGTCAACGGGTC-GGTCG
1 GGTCAACGGGTCGGGTCG
*
7068424 GGTCTACGGGTC-GGTCG
1 GGTCAACGGGTCGGGTCG
*
7068441 GGTTAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
7068459 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
7068477 GGT
1 GGT
7068480 TGTGACCGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 26 0.51
18 25 0.49
ACGTcount: A:0.10, C:0.21, G:0.49, T:0.21
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:7068459 original size:18 final size:17
Alignment explanation
Indices: 7068411--7068480 Score: 97
Period size: 18 Copynumber: 4.0 Consensus size: 17
7068401 GTTAACGGTC
7068411 AACGGGTCGGTCGGGTCT
1 AACGGGTCGGTCGGGT-T
7068429 -ACGGGTCGGTCGGGTT
1 AACGGGTCGGTCGGGTT
*
7068445 AACGGGTCGGGTCGGGTC
1 AACGGGTC-GGTCGGGTT
7068463 AACGGGTCGGGTCGGGTT
1 AACGGGTC-GGTCGGGTT
7068481 GTGACCGGTC
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
16 1 0.02
17 22 0.46
18 25 0.52
ACGTcount: A:0.10, C:0.20, G:0.49, T:0.21
Consensus pattern (17 bp):
AACGGGTCGGTCGGGTT
Found at i:7070419 original size:2 final size:2
Alignment explanation
Indices: 7070412--7070436 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7070402 TTTTTAAAAC
7070412 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7070437 CCCCCATCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7070571 original size:35 final size:35
Alignment explanation
Indices: 7070498--7070572 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
7070488 CGTCACACCC
**
7070498 AGTAAGGCCCTAAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTAAGCACACAGCCGAGGAACCGCCA
* *
7070533 AGTAAGGCCCTGAGCACACAGCCGAGGAACCTCCA
1 AGTAAGGCCCTAAGCACACAGCCGAGGAACCGCCA
7070568 AGTAA
1 AGTAA
7070573 TCTTCCTCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.29, G:0.27, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTAAGCACACAGCCGAGGAACCGCCA
Found at i:7070677 original size:24 final size:24
Alignment explanation
Indices: 7070650--7070731 Score: 112
Period size: 24 Copynumber: 3.5 Consensus size: 24
7070640 CATAATTCAA
* *
7070650 GTCAAGTATCATATCAGAATCTAG
1 GTCAAGTATCAGATCAGAATCCAG
* *
7070674 GTCATGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAG
7070698 GTCAA-TATCAGATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
*
7070721 GTCAGGTATCA
1 GTCAAGTATCA
7070732 TAACATAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
23 21 0.42
24 29 0.58
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAG
Found at i:7073093 original size:17 final size:17
Alignment explanation
Indices: 7073047--7073114 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
7073037 GCCAGTCAAC
* *
7073047 GGTCAACGGGTCAGTCA
1 GGTCAACGGGTCGGTCG
7073064 GGTCAACGGGTCGGTCG
1 GGTCAACGGGTCGGTCG
7073081 GGTCAAC--G--GGTCG
1 GGTCAACGGGTCGGTCG
7073094 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTC-GGTCG
7073112 GGT
1 GGT
7073115 TGTGACTGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
13 12 0.27
15 2 0.05
17 22 0.50
18 8 0.18
ACGTcount: A:0.15, C:0.22, G:0.46, T:0.18
Consensus pattern (17 bp):
GGTCAACGGGTCGGTCG
Found at i:7073094 original size:13 final size:13
Alignment explanation
Indices: 7073076--7073110 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
7073066 TCAACGGGTC
7073076 GGTCGGGTCAACG
1 GGTCGGGTCAACG
7073089 GGTCGGGTCAACG
1 GGTCGGGTCAACG
7073102 GGTCGGGTC
1 GGTCGGGTC
7073111 GGGTTGTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.23, G:0.49, T:0.17
Consensus pattern (13 bp):
GGTCGGGTCAACG
Found at i:7074668 original size:14 final size:13
Alignment explanation
Indices: 7074638--7074671 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7074628 TTTATTTCAA
*
7074638 TTTTCTTTTCTCT
1 TTTTCTTTTATCT
7074651 TTTTCTTTTATGCT
1 TTTTCTTTTAT-CT
7074665 TTTTCTT
1 TTTTCTT
7074672 CTTTTCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTCTTTTATCT
Found at i:7074695 original size:19 final size:17
Alignment explanation
Indices: 7074653--7074704 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
7074643 TTTTCTCTTT
* *
7074653 TTCTTTTATGCTTTTTC
1 TTCTTTTCTTCTTTTTC
7074670 TTCTTTTCTTCTTTTTC
1 TTCTTTTCTTCTTTTTC
*
7074687 ATCTCTTTTTTTCTTTTT
1 -T-TCTTTTCTTCTTTTT
7074705 ATTTTCCCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 15 0.50
18 1 0.03
19 14 0.47
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (17 bp):
TTCTTTTCTTCTTTTTC
Found at i:7074701 original size:8 final size:8
Alignment explanation
Indices: 7074643--7074704 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
7074633 TTCAATTTTC
*
7074643 TTTTCTCT
1 TTTTCTTT
7074651 TTTTCTTT
1 TTTTCTTT
* *
7074659 TATGCTTT
1 TTTTCTTT
7074667 TTCTTCTTT
1 TT-TTCTTT
*
7074676 TCTTCTTT
1 TTTTCTTT
7074684 TTCATCTCTTT
1 TT--T-TCTTT
7074695 TTTTCTTT
1 TTTTCTTT
7074703 TT
1 TT
7074705 ATTTTCCCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 28 0.65
9 7 0.16
10 1 0.02
11 7 0.16
ACGTcount: A:0.03, C:0.19, G:0.02, T:0.76
Consensus pattern (8 bp):
TTTTCTTT
Found at i:7080403 original size:12 final size:12
Alignment explanation
Indices: 7080382--7080411 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7080372 TGCTTAAATG
*
7080382 AAATAGAATCAT
1 AAATAAAATCAT
7080394 AAATAAAATCAT
1 AAATAAAATCAT
7080406 AAATAA
1 AAATAA
7080412 CATAAGGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (12 bp):
AAATAAAATCAT
Found at i:7080483 original size:2 final size:2
Alignment explanation
Indices: 7080476--7080535 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
7080466 TGAAACATGC
7080476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7080518 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
7080536 TCATGGGGCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7080732 original size:20 final size:20
Alignment explanation
Indices: 7080707--7080749 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
7080697 AAAGGTGCAT
7080707 AAAATT-AAATAACAAAAATA
1 AAAATTGAAATAA-AAAAATA
*
7080727 AAAATTGCAATAAAAAAATA
1 AAAATTGAAATAAAAAAATA
7080747 AAA
1 AAA
7080750 TGTTAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAATTGAAATAAAAAAATA
Found at i:7081248 original size:20 final size:20
Alignment explanation
Indices: 7081223--7081266 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7081213 CTATCCTAAT
7081223 TAAAATGAACAAAAGATAAA
1 TAAAATGAACAAAAGATAAA
** *
7081243 TAAAATGGTCAAAATATAAA
1 TAAAATGAACAAAAGATAAA
7081263 TAAA
1 TAAA
7081267 TAAAACCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (20 bp):
TAAAATGAACAAAAGATAAA
Found at i:7085186 original size:54 final size:53
Alignment explanation
Indices: 7085126--7085512 Score: 531
Period size: 54 Copynumber: 7.2 Consensus size: 53
7085116 TGGTTTTTGT
* * * * * * *
7085126 ACACATAGTGTCAATACAATAATTCACAAACTTATTATGAATTCCGTGGGGTGC
1 ACACATAGTGCCAATACAA-AATTCATAAACTAATTATGAATTTCTTAGGTTGC
* **
7085180 ACACATAATGCCAATATGGAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATA-CAAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
* *
7085234 ACACATAGTGTCAATACGAAAATTCATAAACAAATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATAC-AAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
* *
7085288 ACACATAGTGCCAATAAGAAAATTCATAAACTAACTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAAT-ACAAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
* ** *
7085342 ACAGATAGTATCGATACAGAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATACA-AAATTCATAAACTAATTATGAATTTCTTAGGTTGC
*
7085396 ACACATAGTGCCAATACAAAAATTCATAAACTAATTATGAATTTATTAGGTTGC
1 ACACATAGTGCCAATAC-AAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
*
7085450 ACACATAGTGCCAATACGAAAATTCATAAACTTATTATGAATTTCTTAGGTTGC
1 ACACATAGTGCCAATAC-AAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
7085504 ACACATAGT
1 ACACATAGT
7085513 ACCCATTCGG
Statistics
Matches: 295, Mismatches: 33, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 290 0.98
55 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (53 bp):
ACACATAGTGCCAATACAAAATTCATAAACTAATTATGAATTTCTTAGGTTGC
Found at i:7087758 original size:356 final size:356
Alignment explanation
Indices: 7087212--7087915 Score: 927
Period size: 356 Copynumber: 2.0 Consensus size: 356
7087202 AAACGGCTCA
* *
7087212 AGCTTTTAAAACCCTAAGTAATTTCCATTGAACTCAAAATATTTGAGTGTTACCTTATAAGATAT
1 AGCTTTTAAAACCATAAGTAATTTCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATAT
* * *
7087277 GTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCTCAGGTATTCCATACAAATATT
66 GTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCTCAGGCATGCCATACAAATATA
* * *
7087342 AAGTATTGACTACCATCACATCCTGCCATATATTCTATGTTAGTGCGAAATCAATGTTAAACATT
131 AAGTATTGACTACAATCACATCCTGCCATATATTCCATGTTAGTGCAAAATCAATGTTAAACATT
* * * * * *
7087407 GATAATAATAGCATTGATTTCCTTCATATTCAAACATTGATATTCTAGTTGTTATGGACTAATGT
196 GATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTCTAATTATTATGGACTAATAT
* * * * * *
7087472 TTTCGTCTTCTTATATTGGA-GAAAATAGTTTCCTTACTTAGTCCAGTGA-AAACATCCCCAATT
261 TTTCGCCTTCTCAGATT-GACCAAAATAGTTTCCTCACTTAGTCCAG-CACAAACATCCCCAATT
**
7087535 TGGTCCTCCAGCTCCAACAAAATAAGTGACACG
324 TACTCCTCCAGCTCCAACAAAATAAGTGACACG
*
7087568 AGCTTTTAAAACTATAAGTAA-TTCCTATT-ATACTCAAAATATTTGAGTGTTACCTCATAAGAT
1 AGCTTTTAAAACCATAAGTAATTTCC-ATTGA-ACTCAAAATATTTGAGTGTTACCTCATAAGAT
* * * * * * *
7087631 ATGTTATCTACATCTAGGTACATATCCTCGATAATA-CGAGGATCCTCAGGCATGCCTTACAAAT
64 ATGTTATCGACATCAAGGCACATATCCTCAAGAATATC-AAGATCCTCAGGCATGCCATACAAAT
* * * * *
7087695 ATAAA-TGATTGATTACAATCACATCCTGCCTTATATTCCATTTTGGTGCAAAA-CTAGTGTTAA
128 ATAAAGT-ATTGACTACAATCACATCCTGCCATATATTCCATGTTAGTGCAAAATC-AATGTTAA
*
7087758 ACATTGATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTTTAATTATTATGGACT
191 ACATTGATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTCTAATTATTATGGACT
* * *
7087823 GATATTTTCGCCTTCTCAGATTGACCATAATAGTTTCCTCGCTTAGTCCAGCACAAACATCCCCA
256 AATATTTTCGCCTTCTCAGATTGACCAAAATAGTTTCCTCACTTAGTCCAGCACAAACATCCCCA
* *
7087888 ATTTACTCTTCCAGCTCCTACAAAATAA
321 ATTTACTCCTCCAGCTCCAACAAAATAA
7087916 TCACAAGAAA
Statistics
Matches: 300, Mismatches: 41, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
355 11 0.04
356 289 0.96
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (356 bp):
AGCTTTTAAAACCATAAGTAATTTCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATAT
GTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCTCAGGCATGCCATACAAATATA
AAGTATTGACTACAATCACATCCTGCCATATATTCCATGTTAGTGCAAAATCAATGTTAAACATT
GATAAGAATAGCATTGATTTCCTTCATATTCAAACATTAACATTCTAATTATTATGGACTAATAT
TTTCGCCTTCTCAGATTGACCAAAATAGTTTCCTCACTTAGTCCAGCACAAACATCCCCAATTTA
CTCCTCCAGCTCCAACAAAATAAGTGACACG
Found at i:7091252 original size:43 final size:44
Alignment explanation
Indices: 7091205--7091341 Score: 133
Period size: 43 Copynumber: 3.2 Consensus size: 44
7091195 TTACAACATA
*
7091205 TAGCGGCGATTGT-TCA-ACAAACGCCGCAAAAGGTATTGATATT
1 TAGCGGCGATT-TATCATACAAACGCCGCAATAGGTATTGATATT
*
7091248 TAGCGGCG-TTTATCATTA-AAACGCCGCAATAGGTTTTGATATT
1 TAGCGGCGATTTATCA-TACAAACGCCGCAATAGGTATTGATATT
* ** * * *
7091291 TAACGGC-ATTTGGCAGACAAACGCCGCAATA-GTCGTTGATGTT
1 TAGCGGCGATTTATCATACAAACGCCGCAATAGGT-ATTGATATT
7091334 TAGCGGCG
1 TAGCGGCG
7091342 TTTTCTTCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 8 0.10
43 68 0.87
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (44 bp):
TAGCGGCGATTTATCATACAAACGCCGCAATAGGTATTGATATT
Found at i:7091848 original size:21 final size:21
Alignment explanation
Indices: 7091784--7091850 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
7091774 TGATACATTA
*
7091784 CTTCTCTCTGTTCTGCCGCTG
1 CTTCTCTCTGTGCTGCCGCTG
*
7091805 CCTCTCTCTGTGCTGCCGCTG
1 CTTCTCTCTGTGCTGCCGCTG
* *
7091826 CTTCTCTCTCTGCTTCCGCTG
1 CTTCTCTCTGTGCTGCCGCTG
7091847 CTTC
1 CTTC
7091851 CGCTGCTGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.00, C:0.42, G:0.18, T:0.40
Consensus pattern (21 bp):
CTTCTCTCTGTGCTGCCGCTG
Found at i:7091856 original size:30 final size:30
Alignment explanation
Indices: 7091815--7091880 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
7091805 CCTCTCTCTG
* *
7091815 TGCTGCCGCTGCTTCTCTCTCTGCTTCCGC-
1 TGCTTCCGCTGCTGCTCTCTCTGCTTCC-CT
*
7091845 TGCTTCCGCTGCTGCTCTCTCTGTTTCCCT
1 TGCTTCCGCTGCTGCTCTCTCTGCTTCCCT
7091875 TGCTTC
1 TGCTTC
7091881 ATTTTCCGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.00, C:0.41, G:0.18, T:0.41
Consensus pattern (30 bp):
TGCTTCCGCTGCTGCTCTCTCTGCTTCCCT
Found at i:7091859 original size:21 final size:21
Alignment explanation
Indices: 7091796--7091860 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
7091786 TCTCTCTGTT
* * *
7091796 CTGCCGCTGCCTCTCTCTGTG
1 CTGCCGCTGCTTCTCGCTCTG
*
7091817 CTGCCGCTGCTTCTCTCTCTG
1 CTGCCGCTGCTTCTCGCTCTG
*
7091838 CTTCCGCTGCTTC-CGCTGCTG
1 CTGCCGCTGCTTCTCGCT-CTG
7091859 CT
1 CT
7091861 CTCTCTGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 3 0.08
21 36 0.92
ACGTcount: A:0.00, C:0.43, G:0.22, T:0.35
Consensus pattern (21 bp):
CTGCCGCTGCTTCTCGCTCTG
Found at i:7099619 original size:41 final size:43
Alignment explanation
Indices: 7099569--7099663 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 43
7099559 TTTGTGGTAT
* * * *
7099569 AAACGCCGCTAATTTG-CCACCCTATTGCGGCATTTTT-GTAA
1 AAACGCCGCTAATATGTCAACCCTATTGCAGCATTTTTACTAA
* *
7099610 AAACGCCGCT-ATATGTCAACTCTATTGCAGCGTTTTTACTAA
1 AAACGCCGCTAATATGTCAACCCTATTGCAGCATTTTTACTAA
7099652 AAACGCCGCTAA
1 AAACGCCGCTAA
7099664 AGTATCAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 4 0.09
41 27 0.60
42 13 0.29
43 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAATATGTCAACCCTATTGCAGCATTTTTACTAA
Found at i:7101546 original size:44 final size:45
Alignment explanation
Indices: 7101426--7101551 Score: 166
Period size: 47 Copynumber: 2.8 Consensus size: 45
7101416 TATAAAATCT
*
7101426 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
7101471 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTT-TCATATATA
1 CTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCA-AAATA
* *
7101518 CTTGCCA-TTATTCCATAAGCTCATAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
7101552 GCATGGTTAC
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
44 24 0.33
45 10 0.14
46 4 0.05
47 35 0.48
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:7101700 original size:40 final size:40
Alignment explanation
Indices: 7101656--7101777 Score: 235
Period size: 40 Copynumber: 3.0 Consensus size: 40
7101646 ACCGTAGTGC
7101656 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
7101696 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
7101736 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
7101776 TA
1 TA
7101778 TAAACCTGCA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:7105325 original size:25 final size:26
Alignment explanation
Indices: 7105231--7105315 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 26
7105221 ACCAACGTGC
* *
7105231 TAATATACATAAGGTTGTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
* * * *
7105257 TAATGCACAAAAGTTCTTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
7105283 TAATACACATAAGGTCGTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
7105309 T-ATACAC
1 TAATACAC
7105316 TTAGTGTCGT
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
25 6 0.12
26 43 0.88
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (26 bp):
TAATACACATAAGGTCGTGCCCACCA
Found at i:7105331 original size:26 final size:26
Alignment explanation
Indices: 7105231--7105332 Score: 82
Period size: 26 Copynumber: 3.9 Consensus size: 26
7105221 ACCAACGTGC
* * *
7105231 TAATATACATAAGGTTGTGCCCACCA
1 TAATACACATAAGGTCGTACCCACCA
* * * * *
7105257 TAATGCACAAAAGTTCTTGCCCACCA
1 TAATACACATAAGGTCGTACCCACCA
*
7105283 TAATACACATAAGGTCGTGCCCACCA
1 TAATACACATAAGGTCGTACCCACCA
*
7105309 T-ATACAC-TTAGTGTCGTTACCCAC
1 TAATACACATAAG-GTCG-TACCCAC
7105333 TATAGTTATG
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
24 3 0.05
25 10 0.16
26 49 0.79
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (26 bp):
TAATACACATAAGGTCGTACCCACCA
Found at i:7113747 original size:32 final size:29
Alignment explanation
Indices: 7113710--7113820 Score: 98
Period size: 34 Copynumber: 3.5 Consensus size: 29
7113700 TGCACTATTA
*
7113710 GAACAATAAAAAAAGTAGAACTGCTTTGGTTC
1 GAACAATAAAAAAAGTACAA-T--TTTGGTTC
7113742 GAACAATAACAAAAAAGTACAATTTTGGTTC
1 GAACAAT-A-AAAAAAGTACAATTTTGGTTC
*
7113773 GAACAGTAAAAAAATAGCAGTACAATTTTGGTTC
1 GAACA--ATAAAAA-A--AGTACAATTTTGGTTC
*
7113807 GAAC-AGAAAAAAAG
1 GAACAATAAAAAAAG
7113821 AAAAACAAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
28 2 0.03
30 1 0.01
31 23 0.33
32 9 0.13
33 3 0.04
34 31 0.45
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.23
Consensus pattern (29 bp):
GAACAATAAAAAAAGTACAATTTTGGTTC
Found at i:7113772 original size:31 final size:33
Alignment explanation
Indices: 7113734--7113819 Score: 115
Period size: 31 Copynumber: 2.7 Consensus size: 33
7113724 GTAGAACTGC
*
7113734 TTTGGTTCGAACAATAACAAAA-A-AGTACAAT
1 TTTGGTTCGAACAATAAAAAAATACAGTACAAT
*
7113765 TTTGGTTCGAACAGTAAAAAAATAGCAGTACAAT
1 TTTGGTTCGAACAATAAAAAAATA-CAGTACAAT
*
7113799 TTTGGTTCGAAC-AGAAAAAAA
1 TTTGGTTCGAACAATAAAAAAA
7113820 GAAAAACAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
31 20 0.42
32 1 0.02
33 7 0.15
34 20 0.42
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (33 bp):
TTTGGTTCGAACAATAAAAAAATACAGTACAAT
Found at i:7113800 original size:34 final size:31
Alignment explanation
Indices: 7113734--7113819 Score: 120
Period size: 34 Copynumber: 2.7 Consensus size: 31
7113724 GTAGAACTGC
* *
7113734 TTTGGTTCGAACAATAACAAAAAAGTACAAT
1 TTTGGTTCGAACAGTAAAAAAAAAGTACAAT
7113765 TTTGGTTCGAACAGTAAAAAAATAGCAGTACAAT
1 TTTGGTTCGAACAGTAAAAAAA-A--AGTACAAT
7113799 TTTGGTTCGAACAG-AAAAAAA
1 TTTGGTTCGAACAGTAAAAAAA
7113820 GAAAAACAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
31 20 0.40
32 1 0.02
33 7 0.14
34 22 0.44
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (31 bp):
TTTGGTTCGAACAGTAAAAAAAAAGTACAAT
Found at i:7122153 original size:187 final size:186
Alignment explanation
Indices: 7121840--7122211 Score: 701
Period size: 187 Copynumber: 2.0 Consensus size: 186
7121830 TGAAGGAAAG
7121840 TTTATGAATAGGAAAAGAATAGTTACTAGTATTGTATGGTGTAATAATAACGAAATTTGACCCCA
1 TTTATGAATAGGAAAAGAATAGTTACTAGTATTGTATGGTGTAATAATAACGAAATTTGACCCCA
7121905 TTTGGTGATAATCAAGTTGAAAACTGGAAATTCTGGGCACGAGTATCGGTACTGATAGAACAATA
66 TTTGGTGATAATCAAGTTGAAAACTGGAAATTCTGGGCACGAGTATCGGTACTGATAGAACAATA
7121970 CCAATACTATAGGCTTAAAATCAGC-ATCTATTGAGTAGTGTCGATACCGATTAGT
131 CCAATACTATAGGCTTAAAATCAGCAATCTATTGAGTAGTGTCGATACCGATTAGT
7122025 TTTATGAATAGGAAAAGAATAGTTTACTAGTATTGTATGGTGTAATAATAACGAAATTTGACCCC
1 TTTATGAATAGGAAAAGAATAG-TTACTAGTATTGTATGGTGTAATAATAACGAAATTTGACCCC
7122090 ATTTGGGTGATAATCAAGTTGAAAACTGGAAATTCTGGGCACGAGTATCGGTACTGATAGAACAA
65 ATTT-GGTGATAATCAAGTTGAAAACTGGAAATTCTGGGCACGAGTATCGGTACTGATAGAACAA
7122155 TACCAATACTATAGGCTTAAAATCAGCATAATCTATTGAGTAGTGTCGATACCGATT
129 TACCAATACTATAGGCTTAAAATCAGC--AATCTATTGAGTAGTGTCGATACCGATT
7122212 CAAGTGGTAT
Statistics
Matches: 182, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
185 22 0.12
186 46 0.25
187 87 0.48
190 27 0.15
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (186 bp):
TTTATGAATAGGAAAAGAATAGTTACTAGTATTGTATGGTGTAATAATAACGAAATTTGACCCCA
TTTGGTGATAATCAAGTTGAAAACTGGAAATTCTGGGCACGAGTATCGGTACTGATAGAACAATA
CCAATACTATAGGCTTAAAATCAGCAATCTATTGAGTAGTGTCGATACCGATTAGT
Found at i:7122261 original size:20 final size:19
Alignment explanation
Indices: 7122215--7122269 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
7122205 ACCGATTCAA
7122215 GTGGTATCGATACCAAGAG
1 GTGGTATCGATACCAAGAG
*
7122234 GGGAGTATCGATA-CAATGAG
1 GTG-GTATCGATACCAA-GAG
*
7122254 GATGGTATCGACACCA
1 G-TGGTATCGATACCA
7122270 TTGAGCACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 5 0.17
20 21 0.72
21 3 0.10
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (19 bp):
GTGGTATCGATACCAAGAG
Found at i:7122837 original size:46 final size:46
Alignment explanation
Indices: 7122768--7123055 Score: 515
Period size: 46 Copynumber: 6.3 Consensus size: 46
7122758 TAAAATGAAT
7122768 CCATAAAT-AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7122813 CCATAAATGAAATGCATGAGAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7122859 CCATAAATGAAATGCATGAAAGGATTCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
7122905 CCATAAATGTAATGCATGAAATGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7122951 CCATAAATGAAATGCATGAAAGGATGCATTAAGACATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7122997 CCATAAATGAAATGTATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
7123043 CCATAAATGAAAT
1 CCATAAATGAAAT
7123056 TAACGAATGG
Statistics
Matches: 231, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
45 8 0.03
46 223 0.97
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (46 bp):
CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:7123278 original size:56 final size:55
Alignment explanation
Indices: 7123218--7123340 Score: 140
Period size: 56 Copynumber: 2.2 Consensus size: 55
7123208 AAAATTTTGT
* * * * *
7123218 AATTCATAATAAGTTTATGAATTTCCATATGGGCACTATGTGTGCAAA-ATTAAGAA
1 AATTCATAATAAGTGTATGAATTTCCATATGGGAAATATATGTACAAATA-TAAG-A
* * *
7123274 AATTCATACTAAGTGTATGAATTTTCGTATGGGAAATATATGTACAAATATAAGA
1 AATTCATAATAAGTGTATGAATTTCCATATGGGAAATATATGTACAAATATAAGA
*
7123329 AGTTCATAATAA
1 AATTCATAATAA
7123341 TTAGGTGAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
55 11 0.20
56 44 0.79
57 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.34
Consensus pattern (55 bp):
AATTCATAATAAGTGTATGAATTTCCATATGGGAAATATATGTACAAATATAAGA
Found at i:7123655 original size:68 final size:68
Alignment explanation
Indices: 7123519--7123655 Score: 177
Period size: 68 Copynumber: 2.0 Consensus size: 68
7123509 CAAGATTAAT
* * * * * *
7123519 GGCCTGACTGTGCATTTGACAGAAATGTGTCAATCATGTCAGTTAGATGAAAGACTAAGTTCCTT
1 GGCCTGACTGTGCAATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGACTAAATACCGT
7123584 TGA
66 TGA
* * *
7123587 GGCCTGACTGTGCAATTGACAGGAAGGTGTCAATGATGCCAGTTAGATGAACAG-TTAAATACCG
1 GGCCTGACTGTGCAATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAA-AGACTAAATACCG
7123651 TTGA
65 TTGA
7123655 G
1 G
7123656 TAAAAGATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 57 0.97
69 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (68 bp):
GGCCTGACTGTGCAATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGACTAAATACCGT
TGA
Found at i:7123740 original size:80 final size:81
Alignment explanation
Indices: 7123594--7123742 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 81
7123584 TGAGGCCTGA
* * * * *
7123594 CTGTGCAATTGACAGGAAGGTGTCAATGATGCCAGTTAGATGAACAGTTAAATACCGTTGAGTAA
1 CTGTGCAATTGACAGAAAGGTGTCAATCATGCCAATTAGATGAACAGTTAAATACCGTTAAATAA
7123659 AAGATTTATGGCCTAG
66 AAGATTTATGGCCTAG
* * *
7123675 CTGTGCACTTGACAGAAAGG-GTCAATCATGCCAATTAGATGAA-AGGTTAAATGCCTTTAAATA
1 CTGTGCAATTGACAGAAAGGTGTCAATCATGCCAATTAGATGAACA-GTTAAATACCGTTAAATA
7123738 AAAGA
65 AAAGA
7123743 CTAGATGTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
79 1 0.02
80 40 0.68
81 18 0.31
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.26
Consensus pattern (81 bp):
CTGTGCAATTGACAGAAAGGTGTCAATCATGCCAATTAGATGAACAGTTAAATACCGTTAAATAA
AAGATTTATGGCCTAG
Found at i:7124674 original size:418 final size:418
Alignment explanation
Indices: 7123891--7124702 Score: 1295
Period size: 418 Copynumber: 1.9 Consensus size: 418
7123881 TATCAATGAA
*
7123891 AATAAAGAATAAAGAGATAAATGGAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACT
1 AATAAAGAATAAAGAGATAAATAGAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACT
* * *
7123956 AAAAATAATTAAGATATTTGTGAATGGAATGCGGTTTAAATGAGGAGGATTATAGGATCCTTAAA
66 AAAAATAATTAAGATAATTGTGAATGGAATACAGTTTAAATGAGGAGGATTATAGGATCCTTAAA
* * *
7124021 GAATATGATTTAGTACGAAGTAAAAAATATGAAATACCTATGTATACACAAAGGTTACTTTACAA
131 GAATATGATTTAGTACGAACTAAAAAATATCAAATACCTATGTATACACAAAGCTTACTTTACAA
** *
7124086 TATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCCACGTGTAGGTAAAAGTGGAGACA
196 TATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCCACACGTAGGTAAAAGCGGAGACA
* * * *
7124151 AATTAAATAAGGAGTGCAACAGTAGCAACATATATCATCTGTTGAGGTTGATTCTCATCAGTAAC
261 AATTAAATAAGGAGTGCAACAGTAACAACAGATATCATCTGTTAAGGTTGACTCTCATCAGTAAC
* * *
7124216 GGTAGGATAATAATGTTTATTTTGAACAATTGCTGGCATGTAATCAAATTTAAAGAAAAATGCTC
326 GATAGGAAAATAATGTTTATTTTAAACAATTGCTGGCATGTAATCAAATTTAAAGAAAAATGCTC
7124281 TGTATTGTTGCTATCAATGAAAATAAAG
391 TGTATTGTTGCTATCAATGAAAATAAAG
* * * *
7124309 AATAATGAATAAATAGATAAATAGTAAAGAAAAATATAAAGGAAGATAGGTATTCTAGGCATAC-
1 AATAAAGAATAAAGAGATAAATAGAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACT
* *
7124373 AAAAATAATTAAGATAATTGTGAATGGATTACAGTTTATATGAGGAGGATTATAGGATCCTTAAA
66 AAAAATAATTAAGATAATTGTGAATGGAATACAGTTTAAATGAGGAGGATTATAGGATCCTTAAA
* * *
7124438 GAATATACGATTTAGTACGAACTAAATAA-ATCACATACCTATGTATACACAGAGCTTACTTTAC
131 GAATAT--GATTTAGTACGAACTAAAAAATATCAAATACCTATGTATACACAAAGCTTACTTTAC
* *
7124502 AATATTATGTCTCACTAAGTAAATACTTAATGTGTGTTGTTTCCACACGTAGGTAAAAGCGGAGA
194 AATATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCCACACGTAGGTAAAAGCGGAGA
* *
7124567 CAAATTAAATAAGGAGTGCACCAGTAACAACAGATATCATCTGTTAAGGTTGACTCTCATCGGTA
259 CAAATTAAATAAGGAGTGCAACAGTAACAACAGATATCATCTGTTAAGGTTGACTCTCATCAGTA
* * *
7124632 ACGATAGGAAAATCATGTTTATTTTAAACAATTGCTGGCATGTAATCAAATTTAAAGAACAATTC
324 ACGATAGGAAAATAATGTTTATTTTAAACAATTGCTGGCATGTAATCAAATTTAAAGAAAAATGC
7124697 TCTGTA
389 TCTGTA
7124703 ATGTATATAA
Statistics
Matches: 359, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
417 66 0.18
418 274 0.76
419 19 0.05
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (418 bp):
AATAAAGAATAAAGAGATAAATAGAAAAGAAAAATATAAAGGAAGATAGGTATGCTAGGCATACT
AAAAATAATTAAGATAATTGTGAATGGAATACAGTTTAAATGAGGAGGATTATAGGATCCTTAAA
GAATATGATTTAGTACGAACTAAAAAATATCAAATACCTATGTATACACAAAGCTTACTTTACAA
TATTATGTCTCACTAAGTAAATACTTAACGTGTGTTGCTTCCACACGTAGGTAAAAGCGGAGACA
AATTAAATAAGGAGTGCAACAGTAACAACAGATATCATCTGTTAAGGTTGACTCTCATCAGTAAC
GATAGGAAAATAATGTTTATTTTAAACAATTGCTGGCATGTAATCAAATTTAAAGAAAAATGCTC
TGTATTGTTGCTATCAATGAAAATAAAG
Found at i:7128522 original size:2 final size:2
Alignment explanation
Indices: 7128515--7128574 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
7128505 TGAAACATGC
7128515 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7128557 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
7128575 GTTTCATATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7131344 original size:241 final size:241
Alignment explanation
Indices: 7130849--7132100 Score: 1692
Period size: 241 Copynumber: 5.2 Consensus size: 241
7130839 ATTTGGGCTT
* * * *
7130849 CATGCTCGAAAGACTTGCTGATGACCCGAATA-ACTTAATAAGTAAGAAACTTTGGAAATCATTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAA-AGACTTACTAAGTAAGAAACTTTGGAAATCGTTT
* * * *
7130913 TCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATCATAAACTTTGGAAATCGCTTT
65 TCTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTAGAAATCGCTTT
*
7130978 CTCATTTTTCGAAAATCATGTGAAAACA-CCTGCCCAAAGGTCTTATGGATGGCCCGATGTACTT
130 CTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGATGGACTT
* * * *
7131042 ATCATCTTACTCGAAAGACTTATAGATGACCCAAATGATTTAATCAC
195 ATCATCTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
* * *
7131089 CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTATGTAAGAAATTTTAGAAATCGTTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTAAGTAAGAAACTTTGGAAATCGTTTT
* * *
7131154 CTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTAGAAATCGCTTTC
* * * *
7131219 TCATTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATAGCCCGATGTACTTA
131 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGATGGACTTA
*
7131284 TCATTTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
196 TCATCTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
* * * * *
7131330 CATGCTCGAAAGACTTACTGATGGTCTGAAGGACTTACTATGTAAGAAATTTTGGAAATCGTTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTAAGTAAGAAACTTTGGAAATCGTTTT
* * *
7131395 CTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTAGAAATCGCTTTC
* * * * *
7131460 TCCTTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGAATGGCCCGAAGGACTTA
131 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGATGGACTTA
* *
7131525 TCATCTTGTTCGAAAGACTTATAGATGACCCGAAGGATTTAAGAAC
196 TCATCTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
* * * * *
7131571 CATGCTCGAAAGACTCACTTAAGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTAAGTAAGAAACTTTGGAAATCGTTTT
* * *
7131636 CTTAC-TTTC--CAAAAATCAATTTTTAGAAAAGATTTAAATGAGAAACTTTAGAATTCGCTTTC
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTAGAAATCGCTTTC
* * * *
7131698 TCATTTTTTTGAAAATCATGTGAAAACATCCTGCCCGAAGGTCTTATGGATGGTCCGAAGGACTT
131 TCA-TTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGATGGACTT
* ** *
7131763 ATCAT-TATGCTCCAAAGACTTATAGATGACATGAAGGATTTAAGCAT
195 ATCATCT-TGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
* * ** *
7131810 CATGCTCGAAAGACTTATTGATGGCTCGATGGACTTACTAAGTAAGAAACTTTCGAAATCGTTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTAAGTAAGAAACTTTGGAAATCGTTTT
* * * * * * * *
7131875 CTTACTTTTCAAGAAAATTTAATTTTGAGAAAATATTTAATTAAGAAACTTTGGAAATCGCTTTA
66 CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTAGAAATCGCTTTC
* * * * *
7131940 TCATTTTTTGAAAATCATTTGAAAACATCATGCCCGAAGGTCTTATGGATGGCTCGAAT-GACTT
131 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCG-ATGGACTT
* *
7132004 ATCATATTGCTTGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
195 ATCATCTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
** * *
7132051 CATGCTCGAAAGACTTACTGATAACCCG-AAGAACTTACTCATTAAGAAAC
1 CATGCTCGAAAGACTTACTGATGGCCCGAAAG-ACTTACTAAGTAAGAAAC
7132101 CCTTGAAAAT
Statistics
Matches: 905, Mismatches: 97, Indels: 19
0.89 0.10 0.02
Matches are distributed among these distances:
238 50 0.06
239 157 0.17
240 149 0.16
241 501 0.55
242 48 0.05
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (241 bp):
CATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTAAGTAAGAAACTTTGGAAATCGTTTT
CTTACTTTTCAAGAAAAATCAATTTTCAGAAAAGATTTAAATGAGAAACTTTAGAAATCGCTTTC
TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGATGGACTTA
TCATCTTGCTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCAC
Found at i:7131799 original size:41 final size:42
Alignment explanation
Indices: 7131754--7131832 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
7131744 TGGATGGTCC
* *
7131754 GAAGGACTT-ATCATTATGCTCCAAAGACTTATAGATGACAT
1 GAAGGACTTAAGCATCATGCTCCAAAGACTTATAGATGACAT
* * *
7131795 GAAGGATTTAAGCATCATGCTCGAAAGACTTATTGATG
1 GAAGGACTTAAGCATCATGCTCCAAAGACTTATAGATG
7131833 GCTCGATGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 8 0.25
42 24 0.75
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.29
Consensus pattern (42 bp):
GAAGGACTTAAGCATCATGCTCCAAAGACTTATAGATGACAT
Found at i:7131871 original size:480 final size:481
Alignment explanation
Indices: 7130833--7132100 Score: 1724
Period size: 480 Copynumber: 2.6 Consensus size: 481
7130823 ACAGATGGCC
** * * * * * *
7130833 TGAAGGATTTGGGCTTCATGCTCGAAAGACTTGCTGATGACCCGAAT-AACTTAATAAGTAAGAA
1 TGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCG-ATGGACTTACTAAGTAAGAA
* * *
7130897 ACTTTGGAAATCATTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATCATAAA
65 ACTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATAAGAAA
7130962 CTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACA-CCTGCCCAAAGGTCTTATGG
130 CTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGG
* * ** * * *
7131026 ATGGCCCGATGTACTTATCATCTTACTCGAAAGACTTATAGATGACCCAAATGATTTAATCACCA
195 ATGGCCCGAAGGACTTATCATCTTGTTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCACCA
* * * * * *
7131091 TGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACTATGTAAGAAATTTTAGAAATCGTTTTCT
260 TGCTCGAAAGACTTACTTAAGGCCCGAAGGACTTACTAAGTAAGAAACTTTAGAAATCATTTTCT
*
7131156 TACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTC
325 TACTTTTC-ACAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTC
* *
7131221 ATTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATAGCCCGATGTACTTATC
389 ATTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATAGCCCGAAGGACTTATC
* * *
7131286 ATTTTGCTCGAAAGACTTATAGATGACC
454 ATTATGCTCCAAAGACTTATAGATGACA
* * * *
7131314 CGAAGGATTTAAGCACCATGCTCGAAAGACTTACTGATGG-TCTGAAGGACTTACTATGTAAGAA
1 TGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTC-GATGGACTTACTAAGTAAGAA
* * * *
7131378 ATTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAA
65 ACTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATAAGAAA
* * * * * * *
7131443 ATTTAGAAATCACTTTCTCCTTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGA
130 CTTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGG
*
7131508 ATGGCCCGAAGGACTTATCATCTTGTTCGAAAGACTTATAGATGACCCGAAGGATTTAAGAACCA
195 ATGGCCCGAAGGACTTATCATCTTGTTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCACCA
* *
7131573 TGCTCGAAAGACTCACTTAAGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTTCT
260 TGCTCGAAAGACTTACTTAAGGCCCGAAGGACTTACTAAGTAAGAAACTTTAGAAATCATTTTCT
* * * * *
7131638 TAC-TTTC-CAAAAATCAATTTTTAGAAAAGATTTAAATGAGAAACTTTAGAATTCGCTTTCTCA
325 TACTTTTCACAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCA
** * * * *
7131701 TTTTTTTGAAAATCATGTGAAAACATCCTGCCCGAAGGTCTTATGGATGGTCCGAAGGACTTATC
390 -TTTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATAGCCCGAAGGACTTATC
7131766 ATTATGCTCCAAAGACTTATAGATGACA
454 ATTATGCTCCAAAGACTTATAGATGACA
*
7131794 TGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGATGGCTCGATGGACTTACTAAGTAAGAAA
1 TGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCGATGGACTTACTAAGTAAGAAA
* * * * * *
7131859 CTTTCGAAATCGTTTTCTTACTTTTCAAGAAAATTTAATTTTGAGAAAATATTTAATTAAGAAAC
66 CTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATAAGAAAC
* * * * *
7131924 TTTGGAAATCGCTTTATCATTTTTTGAAAATCATTTGAAAACATCATGCCCGAAGGTCTTATGGA
131 TTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGA
* * *
7131989 TGGCTCGAATGACTTATCATATTGCTT-GAAAGACTTATAGATGACCCGAAGGATTTAAGCACCA
196 TGGCCCGAAGGACTTATCATCTTG-TTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCACCA
* * *
7132053 TGCTCGAAAGACTTACTGATAA--CCCGAAGAACTTACTCATTAAGAAAC
260 TGCTCGAAAGACTTACT--TAAGGCCCGAAGGACTTACTAAGTAAGAAAC
7132101 CCTTGAAAAT
Statistics
Matches: 687, Mismatches: 92, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
479 50 0.07
480 345 0.50
481 154 0.22
482 138 0.20
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (481 bp):
TGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCGATGGACTTACTAAGTAAGAAA
CTTTGGAAATCGTTTTCTTACTTTTCAAGAAAAATAAATTTTCAGAAAAGATTTAAATAAGAAAC
TTTGGAAATCGCTTTCTCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGA
TGGCCCGAAGGACTTATCATCTTGTTCGAAAGACTTATAGATGACCCGAAGGATTTAAGCACCAT
GCTCGAAAGACTTACTTAAGGCCCGAAGGACTTACTAAGTAAGAAACTTTAGAAATCATTTTCTT
ACTTTTCACAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTAGAAATCACTTTCTCAT
TTTTCAAAAATCATGTGAAAACATCCTACCCAAAGGTCTTATGGATAGCCCGAAGGACTTATCAT
TATGCTCCAAAGACTTATAGATGACA
Found at i:7132320 original size:55 final size:55
Alignment explanation
Indices: 7132257--7132638 Score: 482
Period size: 55 Copynumber: 7.0 Consensus size: 55
7132247 ATTCATCATG
* * * *
7132257 TCAAGAAACCTCTGAAAATCAGACTTAGTTTGTTTGAAAGCTCAATTAAAAATTA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * *
7132312 TCAAGAAACTTCTGAAAATAAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
*
7132367 TCAAGAAACTTCT-AAAAGTCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATTA
1 TCAAGAAACTTCTGAAAA-TCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * * *
7132422 CCAAGAAACTTCTAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* *
7132477 TCAAGAAACTTCTGAAATTCAGACTTAGTTTCTTTTAAAGCTCATTT-AAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * * * *
7132531 TCAAGAAACTTCTAAAAAGT-AGGCTTAGTTTCCTTGAAAGTTCATTTAAAAATAA
1 TCAAGAAACTTCTGAAAA-TCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
** * * * * **
7132586 TCAAGAAACTTCCAAAAACCGGACTTAGTCTCTTTCAAAATTCATTTAAAAAT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAAT
7132639 ATAAAAAAAC
Statistics
Matches: 287, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
54 50 0.17
55 233 0.81
56 4 0.01
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (55 bp):
TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
Found at i:7132613 original size:164 final size:165
Alignment explanation
Indices: 7132271--7132638 Score: 524
Period size: 164 Copynumber: 2.2 Consensus size: 165
7132261 GAAACCTCTG
* * * * * *
7132271 AAAATCAGACTTAGTTTGTTTGAAAGCTCAATTAAAAATTATCAAGAAACTTCTGAAAATAAGAC
1 AAAACCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAATAAGAC
*
7132336 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAGTCAGACTTAGTTTCTT
66 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAGTCAGACTTAGTTTCCT
* *
7132401 TGAAAGCTCATTTAAAAATTACCAAGAAACTTCTA
131 TGAAAGCTCATTTAAAAATAACCAAGAAACTTCCA
* * *
7132436 AAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAATTCAGAC
1 AAAACCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAATAAGAC
* * *
7132501 TTAGTTTCTTTTAAAGCTCATTT-AAAATCATCAAGAAACTTCTAAAAAGT-AGGCTTAGTTTCC
66 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCT-AAAAGTCAGACTTAGTTTCC
* *
7132564 TTGAAAGTTCATTTAAAAATAATCAAGAAACTTCCA
130 TTGAAAGCTCATTTAAAAATAACCAAGAAACTTCCA
* * * *
7132600 AAAACCGGACTTAGTCTCTTTCAAAATTCATTTAAAAAT
1 AAAACCAGACTTAGTTTCTTTAAAAACTCATTTAAAAAT
7132639 ATAAAAAAAC
Statistics
Matches: 182, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
164 97 0.53
165 85 0.47
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.33
Consensus pattern (165 bp):
AAAACCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAATAAGAC
TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAAGTCAGACTTAGTTTCCT
TGAAAGCTCATTTAAAAATAACCAAGAAACTTCCA
Found at i:7134485 original size:25 final size:25
Alignment explanation
Indices: 7134449--7134523 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 25
7134439 CAATTTTGTT
7134449 TTCTCTTT-TTCTTTTATACTTTTTC-
1 TTCT-TTTCTTCTTTT-TACTTTTTCA
* *
7134474 TTCTTTTCTTCTTTTCTTCTTTTCCA
1 TTCTTTTCTTCTTTT-TACTTTTTCA
*
7134500 TCTCTTTTCTTCTTTTTATTTTTT
1 T-TCTTTTCTTCTTTTTACTTTTT
7134524 TCCTTATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
24 3 0.07
25 18 0.44
26 6 0.15
27 14 0.34
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.73
Consensus pattern (25 bp):
TTCTTTTCTTCTTTTTACTTTTTCA
Found at i:7134490 original size:16 final size:19
Alignment explanation
Indices: 7134469--7134515 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
7134459 CTTTTATACT
7134469 TTTTCTTCTTTT-C-T-TC
1 TTTTCTTCTTTTCCATCTC
7134485 TTTTCTTCTTTTCCATCTC
1 TTTTCTTCTTTTCCATCTC
7134504 TTTTCTTCTTTT
1 TTTTCTTCTTTT
7134516 TATTTTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.43
17 1 0.04
18 1 0.04
19 14 0.50
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTTTCCATCTC
Found at i:7140192 original size:12 final size:12
Alignment explanation
Indices: 7140171--7140200 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7140161 TGCTTAAATG
*
7140171 AAATAGAATCAT
1 AAATAAAATCAT
7140183 AAATAAAATCAT
1 AAATAAAATCAT
7140195 AAATAA
1 AAATAA
7140201 CATAAGGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (12 bp):
AAATAAAATCAT
Found at i:7140272 original size:2 final size:2
Alignment explanation
Indices: 7140265--7140308 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7140255 TGAAACATGC
7140265 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7140307 AT
1 AT
7140309 TCATGGGGCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7142278 original size:14 final size:14
Alignment explanation
Indices: 7142246--7142272 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7142236 TTTAGTACTG
7142246 ATATTATTTTATTT
1 ATATTATTTTATTT
7142260 ATATTATTTTATT
1 ATATTATTTTATT
7142273 ATTATTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
ATATTATTTTATTT
Found at i:7157643 original size:272 final size:272
Alignment explanation
Indices: 7157144--7157647 Score: 719
Period size: 272 Copynumber: 1.9 Consensus size: 272
7157134 AATATCAGGC
* * *
7157144 ACATCAAGACGCATATCCTCAAGAGTATCAGGCACCTCAGGTATGCCATACAAATATGAAGGATT
1 ACATCAAGACGCATATCCTCAAGAGTATCAGGCACCTCAAGTATGCCATACAAATATGAAGAATC
* * * * *
7157209 ATTTACCACTACATCCTGCCATATATTCCATGTTTGAGCAACACTAGTGGTACACATTGATAATA
66 AATTACCACTACACCCCGCCATATATTCCATGTTGGAGCAAAACTAGTGGTACACATTGATAATA
* * * * *
7157274 ATAACATTGATTTCCTTCATATTCAAACATTTGTATGGCAGGATGTAATGGTAATCGATCTTTCA
131 ATAACATTAATTTCCTTCATATTCAAACATTTGTATGGAAAGATGTAATGCTAATCGATCCTTCA
*
7157339 TATTTGTATGGCATACTTGAAATGCATGATATTCTTGAGGATGTGTGCCTTGATGTGTCTGATAA
196 TATTTGTATGGCATACATGAAATGCATGATATTCTTGAGGATGTGTGCCTTGATGTGTCTGATAA
7157404 GACATGTTATCA
261 GACATGTTATCA
* ** *
7157416 ACATCAAGGCGCATATCCTCAAGAGTATCAGG-ATGTTCAAGTATGCCATACAATTATGAAGAAT
1 ACATCAAGACGCATATCCTCAAGAGTATCAGGCA-CCTCAAGTATGCCATACAAATATGAAGAAT
* *
7157480 CAATTACCATTACACCCCGCCATATATTCCATGTTGGTGCAAAACCT-GTGGTGA-ACATTGATA
65 CAATTACCACTACACCCCGCCATATATTCCATGTTGGAGCAAAA-CTAGTGGT-ACACATTGATA
* * * *
7157543 ATAATATCATTAATTTCCTTTATATTCGAACATTTGTATGTAAAGATGTAATGCTAATCGATCCT
128 ATAATAACATTAATTTCCTTCATATTCAAACATTTGTATGGAAAGATGTAATGCTAATCGATCCT
*
7157608 TCATATTTGTATGGCATACATGAAGTGTC-TGATATTCTTG
193 TCATATTTGTATGGCATACATGAAATG-CATGATATTCTTG
7157648 TTATTGACAT
Statistics
Matches: 203, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
271 1 0.00
272 198 0.98
273 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (272 bp):
ACATCAAGACGCATATCCTCAAGAGTATCAGGCACCTCAAGTATGCCATACAAATATGAAGAATC
AATTACCACTACACCCCGCCATATATTCCATGTTGGAGCAAAACTAGTGGTACACATTGATAATA
ATAACATTAATTTCCTTCATATTCAAACATTTGTATGGAAAGATGTAATGCTAATCGATCCTTCA
TATTTGTATGGCATACATGAAATGCATGATATTCTTGAGGATGTGTGCCTTGATGTGTCTGATAA
GACATGTTATCA
Found at i:7158574 original size:107 final size:108
Alignment explanation
Indices: 7158421--7158643 Score: 340
Period size: 107 Copynumber: 2.1 Consensus size: 108
7158411 ACGTGGGGTG
* *
7158421 CACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTTTCACA-ATAATG
1 CACACATAATGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTTGCACAGATAATG
* * *
7158485 TCAATACGGAAATTCATAAACAAATTATGAATTTCTTAGGTTA
66 CCAATACGAAAATTCATAAACAAATTATGAATTTCTAAGGTTA
* *
7158528 CACACATAATGCTAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTTGCACAGATAGTG
1 CACACATAATGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTTGCACAGATAATG
* * * *
7158593 CCGATACGAAAATTCATAAGCTAATTATGAATTTCTAAGGTTG
66 CCAATACGAAAATTCATAAACAAATTATGAATTTCTAAGGTTA
7158636 CACACATA
1 CACACATA
7158644 GTTCCCATTA
Statistics
Matches: 104, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
107 55 0.53
108 49 0.47
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (108 bp):
CACACATAATGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTTGCACAGATAATG
CCAATACGAAAATTCATAAACAAATTATGAATTTCTAAGGTTA
Found at i:7158645 original size:54 final size:54
Alignment explanation
Indices: 7158366--7158645 Score: 364
Period size: 54 Copynumber: 5.2 Consensus size: 54
7158356 AGTGGTTTTC
* * * * * * * * *
7158366 GCACACATAGTGCCGATACAGTAATTCACAAACTCATTATGAATTACGTGGGGT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
7158420 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* * * *
7158474 TCACA-ATAATGTCAATACGGAAATTCATAAACAAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* * *
7158527 ACACACATAATGCTAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
* * * * *
7158581 GCACAGATAGTGCCGATACGAAAATTCATAAGCTAATTATGAATTTCTAAGGTT
1 GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
7158635 GCACACATAGT
1 GCACACATAGT
7158646 TCCCATTAGG
Statistics
Matches: 199, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 49 0.25
54 150 0.75
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.30
Consensus pattern (54 bp):
GCACACATAGTGCCAATACGGAAATTCATAAACTAATTATGAATTTCTTAGGTT
Found at i:7161051 original size:365 final size:364
Alignment explanation
Indices: 7160381--7161208 Score: 1097
Period size: 365 Copynumber: 2.3 Consensus size: 364
7160371 CGCTGGAGTG
* *
7160381 ATGTTTTCGTCTTCTTAAATTAGCCAGAATAGTTTCCTCACTTAGTCCAGTTGAAACATCCCCAA
1 ATGTTTTCGTCTTCTTAAATTGGCCAGAATAGTTTCCTCGCTTAGTCCAG-TGAAACATCCCCAA
* * *
7160446 TTTGCTAC-TCCTA-CTCCATCACTTCCTACAAAATAAAAGACACAAGCTTTTATAACCCTAAGT
65 TTTGCT-CTTCC-AGCTCCAACAGTTCCTACAAAATAAAAGACACAAGCTTTTAAAACCCTAAGT
* * * *
7160509 AATTTCCATTGAACTCGAAATATTTGATTGTTACCTTATAAGATATGTTATCGACATCAAGGCAC
128 AATTCCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCAC
* * ** *
7160574 ATATCCTCAAGAATATCAAGATCCTCAGGTATGCCATACAAATATTAAGGATTGATTACCATCAC
193 ATATCATCAAGAATATCAAGATCCTCAGGAATGCCATACAAATAGGAAGGATTGATTACAATCAC
* * * * *
7160639 ATCCTGCCTTATATTCTATGTTAGTGTGAAATCAGTGTTAAACATTGATAATAATAGCATTGATT
258 ATCCTACCTTATATTCCATGTTAGTGTGAAAACAGTATTAAACATTGATAAGAATAGCATTGATT
* *
7160704 TCCTTCATATTCAAACATTGATATTCTAGTTGTTATGGACTA
323 TCCTTCATATTCAAACATTAATATTCTAATTGTTATGGACTA
* *
7160746 ATGTTTTCGTCTTCTTATATTGGCGAGAATAGTTTCCTCGCTTAGTCCAGTGCAAACATCCCCAA
1 ATGTTTTCGTCTTCTTAAATTGGCCAGAATAGTTTCCTCGCTTAGTCCAGTG-AAACATCCCCAA
* ** *
7160811 TTTGCTCTTCCAGCTCCAACAGTTCCGACAAAATAAGTGACACAAGCTTTTAAAACTCTAAGTAA
65 TTTGCTCTTCCAGCTCCAACAGTTCCTACAAAATAAAAGACACAAGCTTTTAAAACCCTAAGTAA
* * * *
7160876 TTCCCATTGGACTCAAAATATTTGAGTGTTACCTCATAAGATATGTTATCTACATCTAGGTACAT
130 TTCCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCACAT
* * * * * * *
7160941 ATCATCGATAATATGAGGATCCTCATGAATGCCTTACAAATAGGAATGATTGATTACAATCACAT
195 ATCATCAAGAATATCAAGATCCTCAGGAATGCCATACAAATAGGAAGGATTGATTACAATCACAT
7161006 CCTACCTTATATTCCATGTT-G-GTGCAAAACTAGTATTAAACATTGATAAGAATAGCATTGATT
260 CCTACCTTATATTCCATGTTAGTGTG-AAAAC-AGTATTAAACATTGATAAGAATAGCATTGATT
* * *
7161069 TCCTTTATATTCAAACATTAATATTTTAATTGTTATGGACTG
323 TCCTTCATATTCAAACATTAATATTCTAATTGTTATGGACTA
* * * * * * *
7161111 ATATTTTCGTCTTCTCAGATTGACCATAATAGTTTCCTCGCTTAGTCCCGCGTAAACATCCCCAA
1 ATGTTTTCGTCTTCTTAAATTGGCCAGAATAGTTTCCTCGCTTAGTCCAGTG-AAACATCCCCAA
* * **
7161176 TTTTCTCTTCTAGCTCCTGCAGTTCCTACAAAA
65 TTTGCTCTTCCAGCTCCAACAGTTCCTACAAAA
7161209 AAATCACAAG
Statistics
Matches: 403, Mismatches: 55, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
363 3 0.01
364 9 0.02
365 391 0.97
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (364 bp):
ATGTTTTCGTCTTCTTAAATTGGCCAGAATAGTTTCCTCGCTTAGTCCAGTGAAACATCCCCAAT
TTGCTCTTCCAGCTCCAACAGTTCCTACAAAATAAAAGACACAAGCTTTTAAAACCCTAAGTAAT
TCCCATTGAACTCAAAATATTTGAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCACATA
TCATCAAGAATATCAAGATCCTCAGGAATGCCATACAAATAGGAAGGATTGATTACAATCACATC
CTACCTTATATTCCATGTTAGTGTGAAAACAGTATTAAACATTGATAAGAATAGCATTGATTTCC
TTCATATTCAAACATTAATATTCTAATTGTTATGGACTA
Found at i:7165156 original size:14 final size:14
Alignment explanation
Indices: 7165129--7165165 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
7165119 AAACATTTGG
7165129 TACCCAAA-TTAAA
1 TACCCAAATTTAAA
7165142 TACCCAAATTTAAA
1 TACCCAAATTTAAA
*
7165156 TATCCAAATT
1 TACCCAAATT
7165166 GGTATGTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
TACCCAAATTTAAA
Found at i:7167384 original size:22 final size:22
Alignment explanation
Indices: 7167356--7167426 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
7167346 ACCGAAGGGG
7167356 AGTATCGGTACCATAGTGTAGT
1 AGTATCGGTACCATAGTGTAGT
* * *
7167378 AGTATCGATA-C-TGAG-ATA-A
1 AGTATCGGTACCAT-AGTGTAGT
7167397 AGGTATCGGTACCATAGTGTAGT
1 A-GTATCGGTACCATAGTGTAGT
7167420 AGTATCG
1 AGTATCG
7167427 ATAATGAGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
19 1 0.03
20 11 0.30
21 6 0.16
22 18 0.49
23 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (22 bp):
AGTATCGGTACCATAGTGTAGT
Found at i:7167408 original size:42 final size:42
Alignment explanation
Indices: 7167357--7167473 Score: 180
Period size: 42 Copynumber: 2.8 Consensus size: 42
7167347 CCGAAGGGGA
7167357 GTATCGGTACCATAGTGTAGTAGTATCGATACTGAGATAAAG
1 GTATCGGTACCATAGTGTAGTAGTATCGATACTGAGATAAAG
* *
7167399 GTATCGGTACCATAGTGTAGTAGTATCGATAATGAGATAAAT
1 GTATCGGTACCATAGTGTAGTAGTATCGATACTGAGATAAAG
* * * *
7167441 GTATCGATACCATAGTATAGAAGTATCAATACT
1 GTATCGGTACCATAGTGTAGTAGTATCGATACT
7167474 ATGGTAGGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (42 bp):
GTATCGGTACCATAGTGTAGTAGTATCGATACTGAGATAAAG
Found at i:7167943 original size:44 final size:44
Alignment explanation
Indices: 7167895--7168127 Score: 367
Period size: 44 Copynumber: 5.2 Consensus size: 44
7167885 AAAACGAATT
* *
7167895 CATAAATGAAATGCATAACGGTGCATTAAGGCAAGAAAGGATGA
1 CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATGC
* * * *
7167939 CATAAGTTAAATGCATAACGGTGCATCAGGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATGC
*
7167983 CATAAATGAAATGCATAACGGTGCAATAAAGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACGGTGC-ATTAAGGCATGAAAGGATGC
*
7168028 CATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATGC
*
7168072 CATAAATGAAATGCATAACGATGCATTAATGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACGGTGCATTAA-GGCATGAAAGGATGC
7168117 CATAAATGAAA
1 CATAAATGAAA
7168128 ATAATGAATA
Statistics
Matches: 173, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
44 106 0.61
45 67 0.39
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (44 bp):
CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATGC
Found at i:7168045 original size:89 final size:89
Alignment explanation
Indices: 7167895--7168127 Score: 360
Period size: 89 Copynumber: 2.6 Consensus size: 89
7167885 AAAACGAATT
* * * * * *
7167895 CATAAATGAAATGCATAACGGTGC-ATTAAGGCAAGAAAGGATGACATAAGTTAAATGCATAACG
1 CATAAATGAAATGCATAACGGTGCAATAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACA
*
7167959 GTGCATCAGGGCATGAAAGGATGC
66 GTGCATCAAGGCATGAAAGGATGC
7167983 CATAAATGAAATGCATAACGGTGCAATAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACA
1 CATAAATGAAATGCATAACGGTGCAATAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACA
*
7168048 GTGCATTAAGGCATGAAAGGATGC
66 GTGCATCAAGGCATGAAAGGATGC
* * *
7168072 CATAAATGAAATGCATAACGATGCATTAATGGCATGAAAGGATGCCATAAATGAAA
1 CATAAATGAAATGCATAACGGTGCAATAAAGGCATGAAAGGATGCCATAAATGAAA
7168128 ATAATGAATA
Statistics
Matches: 133, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
88 24 0.18
89 109 0.82
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (89 bp):
CATAAATGAAATGCATAACGGTGCAATAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACA
GTGCATCAAGGCATGAAAGGATGC
Found at i:7185538 original size:41 final size:42
Alignment explanation
Indices: 7185459--7185538 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 42
7185449 GCCATCAGTA
* * * *
7185459 AGTCTTTCGAGCATGATGATTAAATTCTTAGGGTCATCTTTT
1 AGTCATTCGAACAAGATGATTAAATTCTTAGGGCCATCTTTT
*
7185501 AGTCATTCGAACAAGATGA-TAAGTTCTTAGGGCCATCT
1 AGTCATTCGAACAAGATGATTAAATTCTTAGGGCCATCT
7185539 ATAAGACCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 17 0.52
42 16 0.48
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (42 bp):
AGTCATTCGAACAAGATGATTAAATTCTTAGGGCCATCTTTT
Found at i:7185556 original size:41 final size:42
Alignment explanation
Indices: 7185464--7185559 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 42
7185454 CAGTAAGTCT
* * * * * *
7185464 TTCGAGCATGATGATTAAATTCTTAGGGTCATCTTTTAGTCA
1 TTCGAACAAGATGATTAAATTCTTAGGGCCATCTATAAGACA
* *
7185506 TTCGAACAAGATGA-TAAGTTCTTAGGGCCATCTATAAGACC
1 TTCGAACAAGATGATTAAATTCTTAGGGCCATCTATAAGACA
*
7185547 TTCGGACAAGATG
1 TTCGAACAAGATG
7185560 TTTTAATGTG
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 33 0.73
42 12 0.27
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (42 bp):
TTCGAACAAGATGATTAAATTCTTAGGGCCATCTATAAGACA
Found at i:7186399 original size:517 final size:514
Alignment explanation
Indices: 7185058--7187427 Score: 2449
Period size: 517 Copynumber: 4.6 Consensus size: 514
7185048 TATAATTTTC
* * *
7185058 GTAAAAATGAGGAAACAATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAA
1 GTAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAATAAAATTTTTGAA
* * * *
7185123 AAGTAAGAAA-ATGATTTCCAAATTTTCTTACCCAGTAGATTATTTCCAAAATTAGTAAGTCCTT
66 AAGTAAGAAAGA-GATTTCCAAAGTTTCTTA-CCAGTAGACTATTTCCAAAATTGGTAAGTCTTT
* * * * * *
7185187 CAGGCCATCAATAAGTCTTTGGAGCATGATGATTAAATCTTTCCGATCATCTGTCAGTGTTTCGA
129 GA-GCCATCAATAAGTCTTTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTATTTCGA
* * * * *
7185252 GCAAGATGATAAGTCC-TCTGGGCCATCTATAAGACATTTGGGCAGGATATTTTAATATGATTTG
193 GCAAGATGATAAGTCCTTC-AGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTG
* * * *
7185316 TAAAAAATAAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGA
257 TAAAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAGGATTTTCAG-AAAATGAAAATTTTGA
* ** * * *
7185381 AAAGTAAGAATGAAATTTCAAAAGTTTCTTGCCAAGTAGACTATTTCCAAAATTGGCAAGTCCTT
321 AAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTT
* * * *
7185446 CAAGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATTCTTAGGGTCATCTTTTAGTCATTCGA
386 CAAGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTTTCAGTCTTTCGA
* * * * * *
7185511 ACAAGATGATAAGTTCTTAGGGCCATCTATAAGACCTTC-GGACAAGATGTTTTAATGTGATATT
451 GCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCTGG-TAGGATGTTTTAATATGATA-T
7185575 T
514 T
* * * *
7185576 GTGGAAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGGATTTTTAGAAAATAAAATTTTTGA
1 GT-AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAATAAAATTTTTGA
* * *
7185641 AAAATAAGAAAGCA-TTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCT
65 AAAGTAAGAAAG-AGATTTCCAAAGTTTCTTACC-AGTAGACTATTTCCAAAATTGGTAAGTCTT
* * * * *
7185705 TAAGGCCATTAGTAAGTATTTCGAGCATGATGATTAAATACTATT--GGTCATCTATCAG-ACTT
128 TGA-GCCATCAATAAGTCTTTCGAGCATGATGATTAAAT-C-ATTCGGGTCATCTGTCAGTA-TT
* * * *
7185767 TCGAGCAAGATTATAAATCCTT-GGGCCATCTATAAGACC-TCTGGGTAGGATGTTTTCATATGA
189 TCGAGCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTC-GGGCAGGATGTTTTCATATGA
* * *
7185830 TTTGTAAAAAATGGGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTT-AGAAAATGAAAATT
253 TTTGTAAAAAATGAGAAAACGATTTTCAAAATTTCTCATTT-AGGATTTTCAGAAAATGAAAATT
* *
7185894 TTGAAAAGTAAGAAAGTCG-TTCCCAAAGTTTCTTACCAAGTAGACTAATTCCAAAATTGGTAAG
317 TTGAAAAGTAAGAAAGT-GATTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAG
*** * * * *
7185958 TCCTTTGGGTCATCAGTAAGTCATTCGA-CTTTATGATTAAATCCTTCGGGTCATCTTTCAGTCT
381 TCCTTCAAGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTTTCAGTCT
* *
7186022 TTCGAGCAAGATGATAAGTCCTTTGGGCTATCTATAAGACATTCTGGTAGGATGTTTTAATATGA
446 TTCGAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCTGGTAGGATGTTTTAATATGA
7186087 TA-T
511 TATT
* * * * * * **
7186090 GTAAAAATGAGAAAGCAATTCTCATAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAAATTTGA
1 GTAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTTAG-AAAATAAAATTTTTGA
* * * *
7186155 AAATTAAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTTCAAAACTGGTAAGTCATT
65 AAAGTAAGAAAGAGATTTCCAAAGTTTCTTACCA-GTAGACTATTTCCAAAATTGGTAAGTC-TT
* * * * *
7186220 TGAGCCATCAATAAGTGTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTAATTCGA
128 TGAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTATTTCGA
* ** * *
7186285 GCAAGATGATAAGTCCTTCATGCCATCTATAAGACCTTCGGAAAAGATGTTTTCATGTGATATAT
193 GCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT-T-T
* * * * **
7186350 GTGAAAAATGAGAAAACGATTTTCAAAATTTTTAATTTAGGATTTTTAGAAAATGAATTTTTTGA
256 GTAAAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAGGATTTTCAGAAAATGAAAATTTTGA
* *
7186415 AAAGTAAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTT
321 AAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTT
* ** *
7186480 -AAGTCCATTAGTAAGTCTTTCGAGCATGATGATTTAATATTATT--GGTCATCTGTCAGTCTTT
386 CAAG-CCATCAGTAAGTCTTTCGAGCATGATGA-TTAA-ATCCTTCGGGTCATCTTTCAGTCTTT
* * ** * *
7186542 CGAGCAAGAT--TATG-GC-TTGGATCATCTATAAGACCCT-TGAGTAGGATGTTTTCATATGAT
448 CGAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCTG-GTAGGATGTTTTAATATGAT
*
7186602 -CT
512 ATT
* *
7186604 GTAAATAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTG
1 GT-AA-AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAATAAAATTTTTG
* * * *
7186669 AAAAGTAAGAAAGTGGTTTTCAAAGTTTATTACCAAGTAGACTATTTCCCAAAATTGGTAAGTCC
64 AAAAGTAAGAAAGAGATTTCCAAAGTTTCTTACC-AGTAGACTATTT-CCAAAATTGGTAAGT-C
* * * * * *
7186734 TTTGGGTCATCAGTAAGT-TATTCAAGCATGATGATTAAATCATTCGGGCCATCTGTCAGTCTTT
126 TTTGAGCCATCAATAAGTCT-TTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTATTT
* * * * *
7186798 CGAGCAAGATGATAAGTCCCTT-GGGCCATCTATAAAACCTTCTGGCACGATGTTTCCATATGAT
190 CGAGCAAGATGATAAGT-CCTTCAGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGAT
* * * * * * *
7186862 ATATGAAAAAAAATGAGAAAGCGAGTGTCAAAGTTTCTCATTTATGATTTTCATAAAATG-AAAT
254 -T-TG-TAAAAAATGAGAAAACGATTTTCAAAATTTCTCATTTAGGATTTTCAGAAAATGAAAAT
* * * * *
7186926 TTCTGAAAAGTAAGAAAGTGATTTCCAAAATTTTTTACCCAGTAGACTATTTCCATAATTGATAA
316 TT-TGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAA
* * * * * *
7186991 TTCCTTCGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTCGGGTCATCTATCAATC
380 GTCCTTCAAGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTTTCAGTC
* * **** * * * *
7187056 TTTTGAGTAAGATGATAAGTCCCGCAGGCCACCTATAAGACCTTCGGGTAGGAT-TTTTCCACAT
445 TTTCGAGCAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCTGGTAGGATGTTTT-AATAT
7187120 GATATTT
509 GATA-TT
* ** * * * ***
7187127 GAAAACAAAATGAGAAAGTGGTTTTCAAAGTTTCTAATTTAAGATTTTCAGAAAATGATTTTTTT
1 G--TA-AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAAT-AAAATTTT
** * * *
7187192 TTTAAAGTAAGAAAGCGATTTCCAAAGTTTGTTACCCAATAGACTATTTTCCAAAATTGGTAAGT
62 TGAAAAGTAAGAAAGAGATTTCCAAAGTTTCTTA-CCAGTAGACTA-TTTCCAAAATTGGTAAGT
* * * * * *
7187257 CCTTCGGGCTATCAATAAGTCTTTCGAGCATGATAATTAAATCATTCGGG-CTATTTTTCAG-AC
125 -CTTTGAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCATTCGGGTC-ATCTGTCAGTA-
** * *
7187320 TTTCGATAAAGATGATAAGTCCCTC-GAGCCATCTATAATACCTTCGGGCAGGATGTTTTCATAT
187 TTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCTATAAGACCTTCGGGCAGGATGTTTTCATAT
* * * *
7187384 GATTTGTAAAAAACTGATAAATCAATTTTCAAAGTTTCTCATTT
251 GATTTGTAAAAAA-TGAGAAAACGATTTTCAAAATTTCTCATTT
7187428 TAAATTTTCA
Statistics
Matches: 1548, Mismatches: 241, Indels: 121
0.81 0.13 0.06
Matches are distributed among these distances:
512 2 0.00
513 43 0.03
514 173 0.11
515 96 0.06
516 267 0.17
517 376 0.24
518 111 0.07
519 187 0.12
520 11 0.01
521 31 0.02
522 7 0.00
523 29 0.02
524 50 0.03
525 159 0.10
526 6 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (514 bp):
GTAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAATAAAATTTTTGAA
AAGTAAGAAAGAGATTTCCAAAGTTTCTTACCAGTAGACTATTTCCAAAATTGGTAAGTCTTTGA
GCCATCAATAAGTCTTTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTATTTCGAGCA
AGATGATAAGTCCTTCAGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGTAAA
AAATGAGAAAACGATTTTCAAAATTTCTCATTTAGGATTTTCAGAAAATGAAAATTTTGAAAAGT
AAGAAAGTGATTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTCAAGC
CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTTTCAGTCTTTCGAGCAAG
ATGATAAGTCCTTTGGGCCATCTATAAGACCTTCTGGTAGGATGTTTTAATATGATATT
Found at i:7186813 original size:774 final size:772
Alignment explanation
Indices: 7185060--7187435 Score: 3005
Period size: 774 Copynumber: 3.1 Consensus size: 772
7185050 TAATTTTCGT
* *
7185060 AAAAATGAGGAAACAATTTTCAAAGTTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAAAA
1 AAAAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAAAA
* * * * * * **
7185125 GTAAGAAAATGATTTCCAAATTTTCTTACCCAGTAGATTATTTCCAAAATTAGTAAGTCCTTCAG
66 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGG
* * * * * * *
7185190 GCCATCAATAAGTCT-TTGGAGCATGATGATTAAATCTTTCCGATCATCTGTCAGTGTTTCGAGC
131 GTCATCAGTAAGT-TATTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTCTTTCGAGC
* * *
7185254 AAGATGATAAGTCCTCTGGGCCATCTATAAGACATT-TGGGCAGGATATTTTAATATGATTTGTA
195 AAGATGATAAGTCCTTTGGGCCATCTATAAGACATTCT-GGCAGGATGTTTTAATATGATATGT-
* *
7185318 AAAAATAAGAAAGCGATTTTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
258 AAAAATGAGAAAGCGATTCTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAA
* * * * *
7185383 AGTAAGAATGAAATTTCAAAAGTTTCTTGCCAAGTAGACTATTTCCAAAATTGGCAAGTCCTTCA
323 AGTAAGAAAGAGATTTCCAAAGTTTCTTGCC-AGTAGACTATTTCCAAAATTGGTAAGTCCTTCG
* * * *
7185448 AGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATTCTTAGGGTCATCTTTTAGTCATTCGAAC
387 AGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGC
* * *
7185513 AAGATGATAAGTTCTT-AGGGCCATCTATAAGACCTTCGGACAAGATGTTTTAATGTGATATTTG
452 AAGATGATAAGTCCTTCA-GGCCATCTATAAGACCTTCGGAAAAGATGTTTTCATGTGATATTTG
* * * *
7185577 TGGAAAATGAGAAAATGATTTTCAAAGTTTTTCATTTAGGATTTTTAGAAAATAAAATTTTTGAA
516 TGAAAAATGAGAAAATGATTTTCAAAGTTTTTAATTTAGGATTTTTAGAAAATGAATTTTTTGAA
* *
7185642 AAATAAGAAAGCATTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
581 AAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTA
*
7185707 AGGCCATTAGTAAGTATTTCGAGCATGATGATTAAATACTATTGGTCATCTATCAGACTTTCGAG
646 AGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTATCAGACTTTCGAG
* * * *
7185772 CAAGATTATAAATCCTTGGGCCATCTATAAGACCTCTGGGTAGGATGTTTTCATATGATTTGTA
711 CAAGATTAT--AGCCTTGGACCATCTATAAGACCTCTGAGTAGGATGTTTTCATATGATCTGTA
* * *
7185836 AAAAATGGGAAAACAATTTTCAAAATTTCTCATTTAAGAATTTTAGAAAATGAAAATTTTGAAAA
1 AAAAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAAAA
* * *
7185901 GTAAGAAAGTCGTTCCCAAAGTTTCTTACCAAGTAGACTAATTCCAAAATTGGTAAGTCCTTTGG
66 GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGG
* * * * *
7185966 GTCATCAGTAAGTCATTCGA-CTTTATGATTAAATCCTTCGGGTCATCTTTCAGTCTTTCGAGCA
131 GTCATCAGTAAGTTATTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTCTTTCGAGCA
* *
7186030 AGATGATAAGTCCTTTGGGCTATCTATAAGACATTCTGGTAGGATGTTTTAATATGATATGTAAA
196 AGATGATAAGTCCTTTGGGCCATCTATAAGACATTCTGGCAGGATGTTTTAATATGATATGTAAA
* * * *
7186095 AATGAGAAAGCAATTCTCATAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAAATTTGAAAATT
261 AATGAGAAAGCGATTCTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAAAGT
* * * *
7186160 AAGAAAGAGATTTCCAAAGTTTCTTGCCAGGTAGACTATTTTCAAAACTGGTAAGTCATTTGAGC
326 AAGAAAGAGATTTCCAAAGTTTCTTGCCA-GTAGACTATTTCCAAAATTGGTAAGTCCTTCGAGC
* *
7186225 CATCAATAAGTGTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTAATTCGAGCAAG
390 CATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGCAAG
* *
7186290 ATGATAAGTCCTTCATGCCATCTATAAGACCTTCGGAAAAGATGTTTTCATGTGATATATGTGAA
455 ATGATAAGTCCTTCAGGCCATCTATAAGACCTTCGGAAAAGATGTTTTCATGTGATATTTGTGAA
* *
7186355 AAATGAGAAAACGATTTTCAAAATTTTTAATTTAGGATTTTTAGAAAATGAATTTTTTGAAAAGT
520 AAATGAGAAAATGATTTTCAAAGTTTTTAATTTAGGATTTTTAGAAAATGAATTTTTTGAAAAGT
* *
7186420 AAGAAAGTGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGTC
585 AAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGC
* * * *
7186485 CATTAGTAAGTCTTTCGAGCATGATGATTTAATATTATTGGTCATCTGTCAGTCTTTCGAGCAAG
650 CATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTATCAGACTTTCGAGCAAG
* *
7186550 ATTAT-GGCTTGGATCATCTATAAGACC-CTTGAGTAGGATGTTTTCATATGATCTGTA
715 ATTATAGCCTTGGACCATCTATAAGACCTC-TGAGTAGGATGTTTTCATATGATCTGTA
*
7186607 AATAAATGAGAAAACGATTTTCAAAATTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAAA
1 AA-AAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAAA
* *
7186672 AGTAAGAAAGTGGTTTTCAAAGTTTATTACCAAGTAGACTATTTCCCAAAATTGGTAAGTCCTTT
65 AGTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTT-CCAAAATTGGTAAGTCCTTT
* *
7186737 GGGTCATCAGTAAGTTATTCAAGCATGATGATTAAATCATTCGGGCCATCTGTCAGTCTTTCGAG
129 GGGTCATCAGTAAGTTATTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTCTTTCGAG
* * * * **
7186802 CAAGATGATAAGTCCCTTGGGCCATCTATAAAACCTTCTGGCACGATGTTTCCATATGATATATG
194 CAAGATGATAAGTCCTTTGGGCCATCTATAAGACATTCTGGCAGGATGTTTTAATATG--ATATG
* * * * * *
7186867 AAAAAAAATGAGAAAGCGAGTGTCAAAGTTTCTCATTTATGATTTTCA-TAAAAT-GAAATTTCT
257 --TAAAAATGAGAAAGCGATTCTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTT-T
* * * * * * *
7186930 GAAAAGTAAGAAAGTGATTTCCAAAATTTTTTACCCAGTAGACTATTTCCATAATTGATAATTCC
319 GAAAAGTAAGAAAGAGATTTCCAAAGTTTCTT-GCCAGTAGACTATTTCCAAAATTGGTAAGTCC
* * * * * *
7186995 TTCGAGCCATCAATAAGTCTTTCAAGCATGATGATTAAATCCTTCGGGTCATCTATCAATCTTTT
383 TTCGAGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTC
* ** * ** * **
7187060 GAGTAAGATGATAAGTCCCGCAGGCCACCTATAAGACCTTCGGGTAGGAT-TTTTCCACATGATA
448 GAGCAAGATGATAAGTCCTTCAGGCCATCTATAAGACCTTCGGAAAAGATGTTTT-CATGTGATA
** * * * * * *
7187124 TTTGAAAACAAAATGAGAAAGTGGTTTTCAAAGTTTCTAATTTAAGATTTTCAGAAAATGATTTT
512 TTTG-TGA-AAAATGAGAAAATGATTTTCAAAGTTTTTAATTTAGGATTTTTAGAAAATGA-ATT
** * * * *
7187189 TTTTTTAAAGTAAGAAAGCGATTTCCAAAGTTTGTTACCCAATAGACTATTTTCCAAAATTGGTA
574 TTTTGAAAAGTAAGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTA-TTTCCAAAATTGGTA
** * * * * * * *
7187254 AGTCCTTCGGGCTATCAATAAGTCTTTCGAGCATGATAATTAAAT-C-ATTCGGGCTATTTTTCA
638 AGTCCTTAAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATT-GGTC-ATCTATCA
** * * * * * *
7187317 GACTTTCGATAAAGATGATAAGTCCCTCGAGCCATCTATAATACCT-TCGGGCAGGATGTTTTCA
701 GACTTTCGAGCAAGATTAT-AG-CCTTGGA-CCATCTATAAGACCTCT-GAGTAGGATGTTTTCA
*
7187381 TATGATTTGTA
762 TATGATCTGTA
* * *
7187392 AAAAACTGATAAATCAATTTTCAAAGTTTCTCATTTTAA-ATTTT
1 AAAAA-TGAGAAAACAATTTTCAAAATTTCTCA-TTTAAGATTTT
7187436 CAAAAAAAAA
Statistics
Matches: 1383, Mismatches: 188, Indels: 49
0.85 0.12 0.03
Matches are distributed among these distances:
770 1 0.00
771 46 0.03
772 97 0.07
773 41 0.03
774 505 0.37
775 93 0.07
776 144 0.10
777 164 0.12
778 44 0.03
779 48 0.03
780 47 0.03
781 73 0.05
783 1 0.00
784 8 0.01
785 66 0.05
786 5 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (772 bp):
AAAAATGAGAAAACAATTTTCAAAATTTCTCATTTAAGATTTTTAGAAAATGAAATTTTTGAAAA
GTAAGAAAGTGGTTTCCAAAGTTTCTTACCAAGTAGACTATTTCCAAAATTGGTAAGTCCTTTGG
GTCATCAGTAAGTTATTCGAGCATGATGATTAAATCATTCGGGTCATCTGTCAGTCTTTCGAGCA
AGATGATAAGTCCTTTGGGCCATCTATAAGACATTCTGGCAGGATGTTTTAATATGATATGTAAA
AATGAGAAAGCGATTCTCAAAGTTTCTCATTTAGGATTTTCAGAAAAATAAAAATTTTGAAAAGT
AAGAAAGAGATTTCCAAAGTTTCTTGCCAGTAGACTATTTCCAAAATTGGTAAGTCCTTCGAGCC
ATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTTTCAGTCATTCGAGCAAGA
TGATAAGTCCTTCAGGCCATCTATAAGACCTTCGGAAAAGATGTTTTCATGTGATATTTGTGAAA
AATGAGAAAATGATTTTCAAAGTTTTTAATTTAGGATTTTTAGAAAATGAATTTTTTGAAAAGTA
AGAAAGCGTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTGGTAAGTCCTTAAGGCC
ATTAGTAAGTCTTTCGAGCATGATGATTAAATACTATTGGTCATCTATCAGACTTTCGAGCAAGA
TTATAGCCTTGGACCATCTATAAGACCTCTGAGTAGGATGTTTTCATATGATCTGTA
Found at i:7187465 original size:9 final size:8
Alignment explanation
Indices: 7187437--7187574 Score: 66
Period size: 8 Copynumber: 15.8 Consensus size: 8
7187427 TTAAATTTTC
7187437 AAAAAAA-
1 AAAAAAAG
7187444 AATAAAAAG
1 AA-AAAAAG
*
7187453 -AAAAAGG
1 AAAAAAAG
7187460 AAAAAATTAG
1 AAAAAA--AG
7187470 AAAGAAAAG
1 AAA-AAAAG
*
7187479 AAAGAAAG
1 AAAAAAAG
7187487 AAAAAAAG
1 AAAAAAAG
7187495 AAAAATGATGGAG
1 AAAAA--A---AG
*
7187508 AAAAGAAAA
1 AAAA-AAAG
7187517 AAAATAAAG
1 AAAA-AAAG
* *
7187526 AGAAAATG
1 AAAAAAAG
7187534 AAAAAATA-
1 AAAAAA-AG
7187542 AAAAAAAG
1 AAAAAAAG
*
7187550 AAAAAATAA
1 AAAAAA-AG
7187559 ATGAAAAAAG
1 A--AAAAAAG
7187569 AAAAAA
1 AAAAAA
7187575 CCCTCAAATG
Statistics
Matches: 101, Mismatches: 13, Indels: 33
0.69 0.09 0.22
Matches are distributed among these distances:
7 8 0.08
8 52 0.51
9 18 0.18
10 7 0.07
11 8 0.08
12 1 0.01
13 6 0.06
14 1 0.01
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.07
Consensus pattern (8 bp):
AAAAAAAG
Found at i:7187465 original size:21 final size:20
Alignment explanation
Indices: 7187439--7187499 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
7187429 AAATTTTCAA
7187439 AAAAAAATAAAAAGAAAAAGG
1 AAAAAAATAAAAAGAAAAA-G
* *
7187460 AAAAAATTAGAAAG-AAAAG
1 AAAAAAATAAAAAGAAAAAG
*
7187479 AAAGAAAGAAAAAAAGAAAAA
1 AAA-AAA-ATAAAAAGAAAAA
7187500 TGATGGAGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 4 0.12
20 7 0.22
21 17 0.53
22 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (20 bp):
AAAAAAATAAAAAGAAAAAG
Found at i:7187477 original size:13 final size:12
Alignment explanation
Indices: 7187437--7187497 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 12
7187427 TTAAATTTTC
*
7187437 AAAAAA-AAATA
1 AAAAAAGAAAGA
7187448 AAAAGAA-AAAGGA
1 AAAA-AAGAAA-GA
7187461 AAAAATTAGAAAGA
1 AAAAA--AGAAAGA
7187475 AAAGAAAGAAAGA
1 AAA-AAAGAAAGA
7187488 AAAAAAGAAA
1 AAAAAAGAAA
7187498 AATGATGGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
11 4 0.09
12 13 0.30
13 15 0.35
14 6 0.14
15 5 0.12
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (12 bp):
AAAAAAGAAAGA
Found at i:7187487 original size:34 final size:34
Alignment explanation
Indices: 7187449--7187574 Score: 92
Period size: 35 Copynumber: 3.5 Consensus size: 34
7187439 AAAAAAATAA
*
7187449 AAAGAAAAAGGAAAAAATTAGAAAGAAAAGAAAG
1 AAAGAAAAAAGAAAAAATTAGAAAGAAAAGAAAG
* * *
7187483 AAAGAAAAAAAGAAAAATGATGGAGAAAAGAAAAAAAAT
1 AAAG-AAAAAAGAAAAA--AT-TAG-AAAGAAAAGAAAG
* * * * *
7187522 AAAGAGAAAATGAAAAAA-TAAAAAAAAGAAAAAAT
1 AAAGA-AAAAAGAAAAAATTAGAAAGAA-AAGAAAG
7187557 AAATGAAAAAAGAAAAAA
1 AAA-GAAAAAAGAAAAAA
7187575 CCCTCAAATG
Statistics
Matches: 75, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
34 9 0.12
35 33 0.44
36 2 0.03
37 3 0.04
38 3 0.04
39 25 0.33
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (34 bp):
AAAGAAAAAAGAAAAAATTAGAAAGAAAAGAAAG
Found at i:7187539 original size:28 final size:28
Alignment explanation
Indices: 7187508--7187574 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
7187498 AATGATGGAG
* *
7187508 AAAAGAAAAAAAATAAAGAGA-AAATGAA
1 AAAAGAAAAAAAAGAAA-AAATAAATGAA
*
7187536 AAAATAAAAAAAAGAAAAAATAAATGAA
1 AAAAGAAAAAAAAGAAAAAATAAATGAA
7187564 AAAAGAAAAAA
1 AAAAGAAAAAA
7187575 CCCTCAAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.06
28 32 0.94
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (28 bp):
AAAAGAAAAAAAAGAAAAAATAAATGAA
Found at i:7187567 original size:19 final size:18
Alignment explanation
Indices: 7187437--7187574 Score: 92
Period size: 19 Copynumber: 7.7 Consensus size: 18
7187427 TTAAATTTTC
*
7187437 AAAAAA-AAATAA-AAAG
1 AAAAAAGAAAAAATAAAG
* *
7187453 AAAAAGGAAAAAAT-TAG
1 AAAAAAGAAAAAATAAAG
* * *
7187470 AAAGAA-AAGAAAGAAAG
1 AAAAAAGAAAAAATAAAG
**
7187487 AAAAAAAGAAAAATGATGGAG
1 -AAAAAAGAAAAA--ATAAAG
7187508 AAAAGAA-AAAAAATAAAG
1 AAAA-AAGAAAAAATAAAG
*
7187526 AGAAAATGAAAAAAT-AA-
1 A-AAAAAGAAAAAATAAAG
7187543 AAAAAAGAAAAAATAAATG
1 AAAAAAGAAAAAATAAA-G
7187562 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
7187575 CCCTCAAATG
Statistics
Matches: 92, Mismatches: 17, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
16 22 0.24
17 16 0.17
18 13 0.14
19 27 0.29
20 9 0.10
21 5 0.05
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.07
Consensus pattern (18 bp):
AAAAAAGAAAAAATAAAG
Found at i:7189718 original size:28 final size:29
Alignment explanation
Indices: 7189669--7189724 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
7189659 ATTTAATATT
7189669 TTTATTTACATTTTCTCTCTTTAATTTCA
1 TTTATTTACATTTTCTCTCTTTAATTTCA
*
7189698 TTTATTTTCATTTT-TGC-CTTTAATTTC
1 TTTATTTACATTTTCT-CTCTTTAATTTC
7189725 CAAAATTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.18, C:0.16, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTATTTACATTTTCTCTCTTTAATTTCA
Found at i:7191919 original size:18 final size:18
Alignment explanation
Indices: 7191864--7191918 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
7191854 GTTTTAAATA
* *
7191864 TATGTGTACATATGTATTT
1 TATGTGAACAT-TTTATTT
*
7191883 TATGTGAATATTTTATTT
1 TATGTGAACATTTTATTT
*
7191901 TATGTGGACA-TTTATTT
1 TATGTGAACATTTTATTT
7191918 T
1 T
7191919 TGTACGTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 8 0.26
18 14 0.45
19 9 0.29
ACGTcount: A:0.25, C:0.04, G:0.15, T:0.56
Consensus pattern (18 bp):
TATGTGAACATTTTATTT
Found at i:7196199 original size:104 final size:104
Alignment explanation
Indices: 7196019--7196208 Score: 274
Period size: 104 Copynumber: 1.8 Consensus size: 104
7196009 ATAAAGCTGG
* * * * * *
7196019 ATTCATGCATTATACAACAAGTAAATGTGTGCAGTCTTCTCGTCTGGATCAACTCTTTAACTCCT
1 ATTCATGCATTAAACAACAAGAAAATGTGTGCAGTCTCCTCGTCTGGATCAACGCCTTAACTACT
7196084 GCCATTAATGTGGCTCATGTATTTACAAATAACTGTTTA
66 GCCATTAATGTGGCTCATGTATTTACAAATAACTGTTTA
* *
7196123 ATTCATGCATTAAACAACAAGAAAATGTGTGTAGTCTCCTC-TCCTGGATCAAGGCCTTAACTAC
1 ATTCATGCATTAAACAACAAGAAAATGTGTGCAGTCTCCTCGT-CTGGATCAACGCCTTAACTAC
* *
7196187 TTCCATTAATGTGGCTCGTGTA
65 TGCCATTAATGTGGCTCATGTA
7196209 GTCACACATC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
103 1 0.01
104 74 0.99
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (104 bp):
ATTCATGCATTAAACAACAAGAAAATGTGTGCAGTCTCCTCGTCTGGATCAACGCCTTAACTACT
GCCATTAATGTGGCTCATGTATTTACAAATAACTGTTTA
Found at i:7196753 original size:12 final size:12
Alignment explanation
Indices: 7196736--7196766 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
7196726 GATTGTCTAT
7196736 AGGGATGGATCA
1 AGGGATGGATCA
7196748 AGGGATGGATCA
1 AGGGATGGATCA
7196760 AGGGATG
1 AGGGATG
7196767 TTGGGTACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.45, T:0.16
Consensus pattern (12 bp):
AGGGATGGATCA
Found at i:7200665 original size:7 final size:7
Alignment explanation
Indices: 7200651--7200683 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
7200641 CCTGTATAAA
7200651 TTATCAT
1 TTATCAT
*
7200658 TGATCAT
1 TTATCAT
7200665 TTATCAT
1 TTATCAT
7200672 TTATCAT
1 TTATCAT
7200679 TTATC
1 TTATC
7200684 TTTGATCACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.03, T:0.55
Consensus pattern (7 bp):
TTATCAT
Found at i:7200670 original size:14 final size:14
Alignment explanation
Indices: 7200651--7200691 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
7200641 CCTGTATAAA
7200651 TTATCATTGATCAT
1 TTATCATTGATCAT
*
7200665 TTATCATTTATCAT
1 TTATCATTGATCAT
*
7200679 TTATCTTTGATCA
1 TTATCATTGATCA
7200692 CTTCTGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.54
Consensus pattern (14 bp):
TTATCATTGATCAT
Found at i:7201451 original size:4 final size:4
Alignment explanation
Indices: 7201444--7201477 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
7201434 GAGTGAGTAG
7201444 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
7201478 CGAGTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:7205514 original size:13 final size:13
Alignment explanation
Indices: 7205479--7205507 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7205469 AATATATACT
7205479 TAAAATAAT-AAC
1 TAAAATAATAAAC
7205491 TAAAATAATAAAC
1 TAAAATAATAAAC
7205504 TAAA
1 TAAA
7205508 TAAATAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAATAATAAAC
Found at i:7207253 original size:41 final size:41
Alignment explanation
Indices: 7207125--7207254 Score: 104
Period size: 41 Copynumber: 3.1 Consensus size: 41
7207115 CTTTAGCAGC
* * *
7207125 GTTTTTATACAAACTCCGCAATAGGGTTCATATATAGTAGCGT
1 GTTTTTATACAAACGCCGCAATAGGGTTAATCTATAGT-G-GT
* * * * * * *
7207168 -TTTTTCA-AAAAACGCCGCAACAGAG-TAGTACTTTAGCGGC
1 GTTTTT-ATACAAACGCCGCAATAGGGTTAAT-CTATAGTGGT
*
7207208 GTTTTTATACAAACGCCACAATAGGGTTAATCTATAGTGGT
1 GTTTTTATACAAACGCCGCAATAGGGTTAATCTATAGTGGT
7207249 GTTTTT
1 GTTTTT
7207255 CAGCAAACGT
Statistics
Matches: 64, Mismatches: 18, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
40 2 0.03
41 35 0.55
42 26 0.41
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (41 bp):
GTTTTTATACAAACGCCGCAATAGGGTTAATCTATAGTGGT
Found at i:7207253 original size:83 final size:83
Alignment explanation
Indices: 7206904--7207254 Score: 388
Period size: 83 Copynumber: 4.3 Consensus size: 83
7206894 GCGGCATTTT
* * * *
7206904 GGTTCATCTATAGTGGC-TTTTTTCAACAAACGCCGCAACAGAGCAGTACTTTAGCGGCTTTTTT
1 GGTTCATCTATAGTGGCGTTTTTTCAAAAAACGCCGCAACAGAGTAGTACTTTAGCAGCGTTTTT
*
7206968 ATACAAACTCCGCAATA-
66 ATACAAACGCCGCAATAG
* * * * * * * * *
7206985 GGTTCATCCATGGTGGAG-TTTCTCAAAAAACACCGTGAA-AAAATAGTA-TTTAGCAGCGTTTG
1 GGTTCATCTATAGTGGCGTTTTTTCAAAAAACGCCG-CAACAGAGTAGTACTTTAGCAGCGTTTT
* **
7207047 TATACAAATGTTGCAATAG
65 TATACAAACGCCGCAATAG
* * * * * *
7207066 GGTTCATCTATAATGGCATTTTTTCAATAAACGTCGTAAAAGAGTAGTACTTTAGCAGCGTTTTT
1 GGTTCATCTATAGTGGCGTTTTTTCAAAAAACGCCGCAACAGAGTAGTACTTTAGCAGCGTTTTT
*
7207131 ATACAAACTCCGCAATAG
66 ATACAAACGCCGCAATAG
* * *
7207149 GGTTCATATATAGTAGCGTTTTTTCAAAAAACGCCGCAACAGAGTAGTACTTTAGCGGCGTTTTT
1 GGTTCATCTATAGTGGCGTTTTTTCAAAAAACGCCGCAACAGAGTAGTACTTTAGCAGCGTTTTT
*
7207214 ATACAAACGCCACAATAG
66 ATACAAACGCCGCAATAG
* *
7207232 GGTTAATCTATAGTGGTGTTTTT
1 GGTTCATCTATAGTGGCGTTTTT
7207255 CAGCAAACGT
Statistics
Matches: 215, Mismatches: 49, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
80 25 0.12
81 49 0.23
82 22 0.10
83 119 0.55
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (83 bp):
GGTTCATCTATAGTGGCGTTTTTTCAAAAAACGCCGCAACAGAGTAGTACTTTAGCAGCGTTTTT
ATACAAACGCCGCAATAG
Found at i:7208177 original size:7 final size:7
Alignment explanation
Indices: 7208165--7208196 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
7208155 ATTAATCATC
7208165 TTCATTT
1 TTCATTT
7208172 TTCATTT
1 TTCATTT
7208179 TTCA-TT
1 TTCATTT
7208185 TTCATTT
1 TTCATTT
7208192 TTCAT
1 TTCAT
7208197 GTGGATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (7 bp):
TTCATTT
Found at i:7208186 original size:13 final size:13
Alignment explanation
Indices: 7208165--7208196 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
7208155 ATTAATCATC
7208165 TTCATTTTTCATTT
1 TTCA-TTTTCATTT
7208179 TTCATTTTCATTT
1 TTCATTTTCATTT
7208192 TTCAT
1 TTCAT
7208197 GTGGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (13 bp):
TTCATTTTCATTT
Found at i:7211174 original size:42 final size:42
Alignment explanation
Indices: 7211128--7211306 Score: 207
Period size: 42 Copynumber: 4.2 Consensus size: 42
7211118 AAAGGTATTA
* * *
7211128 GCGGCATTTGTTCCAAAAACGCCGCTATAAATCTGACATTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCACATTTT
* *
7211170 GCGGCGTTT-TCTCCAAAAAATGCCACTATAGATCTCACATTTT
1 GCGGCGTTTGT-TCC-AAAAACGCCGCTATAGATCTCACATTTT
* * * **
7211213 ACGGCGTTTGTTCAAAAAACGCCGCTATATATGACACATTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCACATTTT
* * *
7211255 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTTGACCTATT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATC-TCACATTTT
7211298 GCGGCGTTT
1 GCGGCGTTT
7211307 TTTGTTCTCA
Statistics
Matches: 113, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.56
43 48 0.42
44 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (42 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCACATTTT
Found at i:7211303 original size:85 final size:85
Alignment explanation
Indices: 7211123--7211306 Score: 219
Period size: 85 Copynumber: 2.2 Consensus size: 85
7211113 TAAATAAAGG
* * **
7211123 TATTAGCGGCATTTGTTCCAAAAACGCCGCTATAAATCTGACATTTTGCGGCGTTTTCTCCAAAA
1 TATT-GCGGCGTTTGTTCAAAAAACGCCGCTATAAATCACACATTTTGCGGCGTTTTCTCCAAAA
*
7211188 AATGCCACTATAGATCTCACA
65 AACGCCACTATAGATCTCACA
* * * *
7211209 TTTTACGGCGTTTGTTCAAAAAACGCCGCTATATATGACACATTTTGCGGCGTTTGT-TCC-AAA
1 TATTGCGGCGTTTGTTCAAAAAACGCCGCTATAAATCACACATTTTGCGGCGTTT-TCTCCAAAA
* * *
7211272 AACGCCGCTATAGATCTTGACC
65 AACGCCACTATAGATC-TCACA
7211294 TATTGCGGCGTTT
1 TATTGCGGCGTTT
7211307 TTTGTTCTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
84 17 0.21
85 61 0.74
86 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (85 bp):
TATTGCGGCGTTTGTTCAAAAAACGCCGCTATAAATCACACATTTTGCGGCGTTTTCTCCAAAAA
ACGCCACTATAGATCTCACA
Found at i:7216379 original size:26 final size:26
Alignment explanation
Indices: 7216349--7216401 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7216339 TAAAACGAAT
*
7216349 CCATAAATGAAATGCATGAAAGGATG
1 CCATAAATGAAAAGCATGAAAGGATG
7216375 CCATAAATGAAAAGCATGAAAGGATG
1 CCATAAATGAAAAGCATGAAAGGATG
7216401 C
1 C
7216402 ATTAAGGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.47, C:0.13, G:0.23, T:0.17
Consensus pattern (26 bp):
CCATAAATGAAAAGCATGAAAGGATG
Found at i:7216423 original size:21 final size:21
Alignment explanation
Indices: 7216388--7216664 Score: 126
Period size: 20 Copynumber: 12.4 Consensus size: 21
7216378 TAAATGAAAA
7216388 GCATG-AAAGGATGCATTAAG
1 GCATGAAAAGGATGCATTAAG
*
7216408 GCATGAAAATGATGCATTAAG
1 GCATGAAAAGGATGCATTAAG
*
7216429 GCATG-AAAGGATGTCATAAATG
1 GCATGAAAAGGATG-CATTAA-G
** *
7216451 AAAT-ATGAAAGGATGAATTAAG
1 GCATGA--AAAGGATGCATTAAG
*
7216473 GCATG-AAAGGATGCCATAAATGAAAT
1 GCATGAAAAGGATG-CAT---T--AAG
7216499 GCATG-AAAGGATGCATTAAG
1 GCATGAAAAGGATGCATTAAG
* *
7216519 GCATG-AAAGGATACCATAAATGAAAT
1 GCATGAAAAGGAT-GCAT---T--AAG
7216545 GCATG-AAAGGATGCATTAAG
1 GCATGAAAAGGATGCATTAAG
*
7216565 GCATG-AAAGGATGCCATAAATGAAAT
1 GCATGAAAAGGATG-CAT---T--AAG
*
7216591 GCATG-AAAGGATACATTAAG
1 GCATGAAAAGGATGCATTAAG
*
7216611 GCAT-AAAAGGATGCCATAAATGAAAT
1 GCATGAAAAGGATG-CAT---T--AAG
7216637 GCATG-AAAGGATGCATTAAG
1 GCATGAAAAGGATGCATTAAG
7216657 GCATGAAA
1 GCATGAAA
7216665 TGATGCCATA
Statistics
Matches: 201, Mismatches: 22, Indels: 67
0.69 0.08 0.23
Matches are distributed among these distances:
20 69 0.34
21 37 0.18
22 10 0.05
23 4 0.02
24 12 0.06
25 12 0.06
26 57 0.28
ACGTcount: A:0.45, C:0.10, G:0.25, T:0.20
Consensus pattern (21 bp):
GCATGAAAAGGATGCATTAAG
Found at i:7216504 original size:26 final size:26
Alignment explanation
Indices: 7216473--7216650 Score: 176
Period size: 26 Copynumber: 7.5 Consensus size: 26
7216463 ATGAATTAAG
7216473 GCATGAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
*
7216499 GCATGAAAGGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAAATGAAAT
*
7216519 GCATGAAAGGATACCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
*
7216545 GCATGAAAGGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAAATGAAAT
7216565 GCATGAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
* *
7216591 GCATGAAAGGAT-ACAT---T--AAG
1 GCATGAAAGGATGCCATAAATGAAAT
*
7216611 GCATAAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
7216637 GCATGAAAGGATGC
1 GCATGAAAGGATGC
7216651 ATTAAGGCAT
Statistics
Matches: 122, Mismatches: 12, Indels: 36
0.72 0.07 0.21
Matches are distributed among these distances:
20 42 0.34
21 9 0.07
22 3 0.02
24 3 0.02
25 9 0.07
26 56 0.46
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (26 bp):
GCATGAAAGGATGCCATAAATGAAAT
Found at i:7216522 original size:46 final size:46
Alignment explanation
Indices: 7216349--7216682 Score: 468
Period size: 46 Copynumber: 7.3 Consensus size: 46
7216339 TAAAACGAAT
*
7216349 CCATAAATGAAATGCATGAAAGGATGCCATAAATGAAAAGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATG
* *
7216401 -CAT---T--AAGGCATGAAAATGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATG-AAAGGATGCATTAAGGCATGAAAGGATG
* *
7216442 TCATAAATGAAAT--ATGAAAGGATGAATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7216486 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATA
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
7216532 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
7216578 CCATAAATGAAATGCATGAAAGGATACATTAAGGCATAAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
7216624 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAATGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
7216670 CCATAAATGAAAT
1 CCATAAATGAAAT
7216683 TAACAAATGG
Statistics
Matches: 258, Mismatches: 15, Indels: 24
0.87 0.05 0.08
Matches are distributed among these distances:
41 15 0.06
42 3 0.01
43 1 0.00
44 38 0.15
45 4 0.02
46 184 0.71
47 9 0.03
48 1 0.00
51 3 0.01
ACGTcount: A:0.46, C:0.10, G:0.24, T:0.20
Consensus pattern (46 bp):
CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:7216907 original size:56 final size:55
Alignment explanation
Indices: 7216845--7216967 Score: 133
Period size: 56 Copynumber: 2.2 Consensus size: 55
7216835 AAAATTTAGT
* * * * *
7216845 AATTCATAATAAGTTTATGAA-TTTCCGTATGGGCACTATGTGTGCAAA-ACTAAGAA
1 AATTCATAATAAGTGTAT-AACTTTCCGTATGGGAAATATATGTACAAATA-TAAG-A
* *
7216901 AATTCATACTAAGTGTATAACTTTCTGTATGGGAAATATATGTACAAATATAAGA
1 AATTCATAATAAGTGTATAACTTTCCGTATGGGAAATATATGTACAAATATAAGA
*
7216956 AGTTCATAATAA
1 AATTCATAATAA
7216968 TTAGGTGAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
55 13 0.23
56 42 0.75
57 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (55 bp):
AATTCATAATAAGTGTATAACTTTCCGTATGGGAAATATATGTACAAATATAAGA
Found at i:7217535 original size:16 final size:18
Alignment explanation
Indices: 7217514--7217553 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 18
7217504 GGATGCTATC
7217514 AATGAAAATAAAGA-AT-
1 AATGAAAATAAAGATATA
7217530 AATG--AATAAAGATATA
1 AATGAAAATAAAGATATA
7217546 AATGAAAA
1 AATGAAAA
7217554 AGAAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
14 8 0.40
15 2 0.10
16 8 0.40
18 2 0.10
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (18 bp):
AATGAAAATAAAGATATA
Found at i:7217539 original size:14 final size:15
Alignment explanation
Indices: 7217520--7217561 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
7217510 TATCAATGAA
7217520 AATAAAGAAT-AATG
1 AATAAAGAATAAATG
7217534 AATAAAGATATAAATG
1 AATAAAGA-ATAAATG
7217550 AA-AAAGAA-AAAT
1 AATAAAGAATAAAT
7217562 ATAAAGGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.15
14 9 0.35
15 7 0.27
16 6 0.23
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (15 bp):
AATAAAGAATAAATG
Found at i:7221561 original size:20 final size:20
Alignment explanation
Indices: 7221531--7221578 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7221521 CAGTGCATCC
7221531 AAATCAAAATGAACAAAATAT
1 AAAT-AAAATGAACAAAATAT
**
7221552 AAATAAAATGGTCAAAATAT
1 AAATAAAATGAACAAAATAT
7221572 AAATAAA
1 AAATAAA
7221579 CAGAAGCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (20 bp):
AAATAAAATGAACAAAATAT
Found at i:7223525 original size:241 final size:240
Alignment explanation
Indices: 7223088--7224081 Score: 1387
Period size: 241 Copynumber: 4.2 Consensus size: 240
7223078 ATTTGGGCAT
* *
7223088 CATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTAATAAGTAAGAAACTTTGGAAATCATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * *
7223153 CTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCGCTTTT
66 CTTACTTTT-AAGAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCACTTTC
** * *
7223218 TCATTTTTCGAAAATCATGTGAAAGTATCCTGCCCAAAGGTCTTATGGATGGCCCGATGTACTTA
130 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTA
7223283 TCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACAC
195 TCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACAC
* **
7223329 CATGCTCAAAAGACTTACTGATGGCCCGAAGGACTTACTAAACAAGAAACTTTGGAAATCATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * *
7223394 CTTACTTTTTAAGAAAAATCAATTTTCAAAAAAGATTTAAATGAGAAAATTTGGAAATCACTTTC
66 CTTAC-TTTTAAGAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCACTTTC
* * * * *
7223459 TCATTTTTCGAAAATCATGTGAAAACATCCTTCCTAAAGGTCTTATGAATAGCCTGAAGGACTTA
130 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTA
* *
7223524 TCATCTTGTTCAAAAGACTTATAGATAACCCGAAGGATTTAAGA-AC
195 TCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAA-ACAC
*
7223570 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATC-GTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* * * *
7223634 -TTACTTTT--CAAAAATCATTTTTCATAAAAGATTTAAATAATAAACTTTGG-AATCTACTTTC
66 CTTACTTTTAAGAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATC-ACTTTC
* ** * *
7223695 TCA-TTTTCTGAAAATCATTTGAAAACATCCTGCCTGAAGGTCTTAT-GATGGCCCAAAGAACTT
130 TCATTTTTC-GAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTT
* * * * *
7223758 ATCATCATGCTCGAAAGACTTATAGATGACCTGAAGGATTTAAGCAT
194 ATCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACAC
* * * * * *
7223805 CGTGCTCGAAAGACTTACTTATGGCTCGATGAACTTACTAAGTAAGAAACTTTGGAAATTATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
* *
7223870 CTTAC-TTTAA-AAAAATCAATTTTGAGAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCT
66 CTTACTTTTAAGAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCACTTTCT
* * * *
7223933 CATTTTTTGAAAATCATGTGAAAACATCATGCCCGAAGGTCTTATGGATGGCTCGAAGGACTTAT
131 CATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTAT
* * *
7223998 CATCTTTCTCAAAAAACTTATAGATGACCCGAAGGATTTAAGCAC
196 CATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACAC
* *
7224043 CATGCTCGAAAGATTTACTGATGGCCTGAAGGACTTACT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACT
7224082 CATCAAGAAA
Statistics
Matches: 662, Mismatches: 79, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
235 114 0.17
236 85 0.13
237 83 0.13
238 99 0.15
239 4 0.01
240 3 0.00
241 269 0.41
242 5 0.01
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (240 bp):
CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCATTTT
CTTACTTTTAAGAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCACTTTCT
CATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTAT
CATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACAC
Found at i:7224092 original size:473 final size:479
Alignment explanation
Indices: 7223088--7224081 Score: 1441
Period size: 473 Copynumber: 2.1 Consensus size: 479
7223078 ATTTGGGCAT
* * *
7223088 CATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTAATAAGTAAGAAACTTTGGAAATCATTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCAGTTT
* * *
7223153 CTTACTTTTCAAGAAAAATGAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCGCTTTT
66 CTTACTTTTC-A-AAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCACTTTC
** * * *
7223218 TCATTTTTCGAAAATCATGTGAAAGTATCCTGCCCAAAGGTCTTATGGATGGCCCGATGTACTTA
129 TCATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCAAAGAACTTA
*
7223283 TCATCTTGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACACCATGCTCAAAAGACTTACT
194 TCATCATGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACACCATGCTCAAAAGACTTACT
*
7223348 GATGGCCCGAAGGACTTACTAAACAAGAAACTTTGGAAATCATTTTCTTACTTTTTAAGAAAAAT
259 GATGGCCCGAAGAACTTACTAAACAAGAAACTTTGGAAATCATTTTCTTAC-TTTTAAGAAAAAT
7223413 CAATTTTCAAAAAAGATTTAAATGAGAAAATTTGGAAATCACTTTCTCATTTTTCGAAAATCATG
323 CAATTTTCAAAAAAGATTTAAATGAGAAAATTTGGAAATCACTTTCTCATTTTTCGAAAATCATG
* * * *
7223478 TGAAAACATCCTTCCTAAAGGTCTTATGAATAGCCTGAAGGACTTATCATCTTGTTCAAAAGACT
388 TGAAAACATCATGCCCAAAGGTCTTATGAATAGCCTGAAGGACTTATCATCTTGTTCAAAAAACT
7223543 TATAGATAACCCGAAGGATTTAAGAAC
453 TATAGATAACCCGAAGGATTTAAGAAC
7223570 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATC-GTTT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCAGTTT
* * *
7223634 -TTACTTTTC-AAAAATCATTTTTCATAAAAGATTTAAATAATAAACTTTGG-AATCTACTTTCT
66 CTTACTTTTCAAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATC-ACTTTCT
* **
7223696 CA-TTTTCTGAAAATCATTTGAAAACATCCTGCCTGAAGGTCTTAT-GATGGCCCAAAGAACTTA
130 CATTTTTC-GAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCAAAGAACTTA
* * * * * *
7223759 TCATCATGCTCGAAAGACTTATAGATGACCTGAAGGATTTAAGCATCGTGCTCGAAAGACTTACT
194 TCATCATGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACACCATGCTCAAAAGACTTACT
* * * ** *
7223824 TATGGCTCGATGAACTTACTAAGTAAGAAACTTTGGAAATTATTTTCTTAC-TTTAA-AAAAATC
259 GATGGCCCGAAGAACTTACTAAACAAGAAACTTTGGAAATCATTTTCTTACTTTTAAGAAAAATC
* * * *
7223887 AATTTTGAGAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAATCATGT
324 AATTTTCAAAAAAGATTTAAATGAGAAAATTTGGAAATCACTTTCTCATTTTTCGAAAATCATGT
* * *
7223952 GAAAACATCATGCCCGAAGGTCTTATGGAT-GGCTCGAAGGACTTATCATCTT-TCTCAAAAAAC
389 GAAAACATCATGCCCAAAGGTCTTATGAATAGCCT-GAAGGACTTATCATCTTGT-TCAAAAAAC
* *
7224015 TTATAGATGACCCGAAGGATTTAAGCAC
452 TTATAGATAACCCGAAGGATTTAAGAAC
* *
7224043 CATGCTCGAAAGATTTACTGATGGCCTGAAGGACTTACT
1 CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACT
7224082 CATCAAGAAA
Statistics
Matches: 462, Mismatches: 46, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
472 4 0.01
473 181 0.39
474 5 0.01
476 126 0.27
477 76 0.16
480 9 0.02
481 3 0.01
482 58 0.13
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (479 bp):
CATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCAGTTT
CTTACTTTTCAAAAAATCAATTTTCAGAAAAGATTTAAATAAGAAACTTTGGAAATCACTTTCTC
ATTTTTCGAAAATCATGTGAAAACATCCTGCCCAAAGGTCTTATGGATGGCCCAAAGAACTTATC
ATCATGCTCAAAAGACTTATAGATGACCCGAAGGATTTAAACACCATGCTCAAAAGACTTACTGA
TGGCCCGAAGAACTTACTAAACAAGAAACTTTGGAAATCATTTTCTTACTTTTAAGAAAAATCAA
TTTTCAAAAAAGATTTAAATGAGAAAATTTGGAAATCACTTTCTCATTTTTCGAAAATCATGTGA
AAACATCATGCCCAAAGGTCTTATGAATAGCCTGAAGGACTTATCATCTTGTTCAAAAAACTTAT
AGATAACCCGAAGGATTTAAGAAC
Found at i:7224171 original size:58 final size:56
Alignment explanation
Indices: 7224081--7224242 Score: 182
Period size: 58 Copynumber: 2.8 Consensus size: 56
7224071 AAGGACTTAC
* * * * * * *
7224081 TCATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAAACTTTTGTTTA-CAGTTA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAAAAA---TTCTTTAGAAATAA
* *
7224139 TCATCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTTTAACAATTCTTTAGAAATAA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTC-TTAAAAATTCTTTAGAAATAA
7224196 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTTTAAAAATTC
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTC--TTAAAAATTC
7224243 ATTATGTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
56 6 0.07
57 37 0.41
58 41 0.46
59 6 0.07
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (56 bp):
TCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTTAAAAATTCTTTAGAAATAA
Found at i:7224476 original size:166 final size:166
Alignment explanation
Indices: 7224247--7224632 Score: 535
Period size: 166 Copynumber: 2.3 Consensus size: 166
7224237 AAATTCATTA
* * * * * **
7224247 TGTCAAGAAACCTCTG-AAAATTAGACTTAGTTTATTTGAAAGCTCATTTAAAAATTGTCAAGAA
1 TGTCAAGAAACTTCTGAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAA
* *
7224311 ACTTTTGAAAATAAGAATTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAA
66 ACTTCTGAAAATAAGAATTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAA
*
7224376 ATAAGACT-TAGTTTCTTTGAAAGCTCATTTAAAAAT
131 ATAAG-CTATAGTTTCCTTGAAAGCTCATTTAAAAAT
*
7224412 TGTCAATAAACTTCTGAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAA
1 TGTCAAGAAACTTCTGAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAA
* * * *
7224477 ACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCATCAAGAAACTTCTAAAA
66 ACTTCTGAAAATAAGAATTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAA
* *
7224542 ATCAGGTATAGTTTCCTTGAAAGCTCATTTAAAAAT
131 ATAAGCTATAGTTTCCTTGAAAGCTCATTTAAAAAT
** * * * *
7224578 AATCAAGAAACTTCT-AAAAACCAGACTTAGTCTCTTTCAAAATTCATTTAAAAAT
1 TGTCAAGAAACTTCTGAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAAT
7224633 ATAAAAACCC
Statistics
Matches: 195, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
165 51 0.26
166 144 0.74
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (166 bp):
TGTCAAGAAACTTCTGAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAA
ACTTCTGAAAATAAGAATTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTAAAA
ATAAGCTATAGTTTCCTTGAAAGCTCATTTAAAAAT
Found at i:7224633 original size:55 final size:55
Alignment explanation
Indices: 7224249--7224632 Score: 509
Period size: 55 Copynumber: 7.0 Consensus size: 55
7224239 ATTCATTATG
* * * **
7224249 TCAAGAAACCTCTGAAAATTAGACTTAGTTTATTTGAAAGCTCATTTAAAAATTG
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * * * *
7224304 TCAAGAAACTTTTGAAAATAAGAATTAGTTTCTTTAAAAACTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* **
7224359 TCAAGAAACTTCTGAAAATAAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATTG
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * *
7224414 TCAATAAACTTCTGAAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
1 TCAAGAAACTTCTG-AAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
7224470 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * * *
7224525 TCAAGAAACTTCTAAAAATCAG-GTATAGTTTCCTTGAAAGCTCATTTAAAAATAA
1 TCAAGAAACTTCTGAAAATCAGACT-TAGTTTCTTTGAAAGCTCATTTAAAAATCA
* * * * **
7224580 TCAAGAAACTTCTAAAAACCAGACTTAGTCTCTTTCAAAATTCATTTAAAAAT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAAT
7224633 ATAAAAACCC
Statistics
Matches: 291, Mismatches: 35, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
54 1 0.00
55 240 0.82
56 50 0.17
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (55 bp):
TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGCTCATTTAAAAATCA
Found at i:7234896 original size:21 final size:21
Alignment explanation
Indices: 7234870--7234925 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
7234860 TGACACTGGG
7234870 TACCTAGCTAGCTACCTACAC
1 TACCTAGCTAGCTACCTACAC
**
7234891 TACCTAGCTAGCTACCTATGC
1 TACCTAGCTAGCTACCTACAC
*
7234912 TACCTATCTAGCTA
1 TACCTAGCTAGCTA
7234926 AGTGACCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.27, C:0.34, G:0.11, T:0.29
Consensus pattern (21 bp):
TACCTAGCTAGCTACCTACAC
Found at i:7241556 original size:21 final size:20
Alignment explanation
Indices: 7241532--7241574 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7241522 TAATGTAGTA
*
7241532 TAATGTGTACCTAAATAATTT
1 TAATGTGTAACT-AATAATTT
* *
7241553 TAATTTTTAACTAATAATTT
1 TAATGTGTAACTAATAATTT
7241573 TA
1 TA
7241575 TATTATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.49
Consensus pattern (20 bp):
TAATGTGTAACTAATAATTT
Found at i:7242761 original size:21 final size:21
Alignment explanation
Indices: 7242722--7242761 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7242712 TTAAAATTAC
*
7242722 TAAAAACTATTAAATTTATAA
1 TAAAAACTATTAAAGTTATAA
* *
7242743 TAAATACTATTGAAGTTAT
1 TAAAAACTATTAAAGTTAT
7242762 TTTTTAAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
TAAAAACTATTAAAGTTATAA
Found at i:7242776 original size:33 final size:34
Alignment explanation
Indices: 7242731--7242795 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
7242721 CTAAAAACTA
*
7242731 TTAAATTTATAATAAATACTATTGAAGTTATTTT
1 TTAAATTTATAATAAATACTATTAAAGTTATTTT
* *
7242765 TTAAA-TTATAATTAATATTATTAAAGTTATT
1 TTAAATTTATAATAAATACTATTAAAGTTATT
7242796 GTACATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 23 0.82
34 5 0.18
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (34 bp):
TTAAATTTATAATAAATACTATTAAAGTTATTTT
Done.