Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 62
Found at i:7250770 original size:23 final size:24
Alignment explanation
Indices: 7250719--7250803 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 24
7250709 ATTTTATAAG
* *
7250719 AATTCTGTTATGATACCTGACCTA
1 AATTCTATTCTGATACCTGACCTA
* *
7250743 GATTCTATTCTGATA-CTGATCTA
1 AATTCTATTCTGATACCTGACCTA
* * *
7250766 AATTCTATTCTGATATCTTACCTT
1 AATTCTATTCTGATACCTGACCTA
* *
7250790 AATTTTATTTTGAT
1 AATTCTATTCTGAT
7250804 TTATGATATC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 21 0.42
24 29 0.58
ACGTcount: A:0.27, C:0.16, G:0.09, T:0.47
Consensus pattern (24 bp):
AATTCTATTCTGATACCTGACCTA
Found at i:7265801 original size:273 final size:272
Alignment explanation
Indices: 7265312--7265805 Score: 670
Period size: 273 Copynumber: 1.8 Consensus size: 272
7265302 ACATCAAAAC
* * *
7265312 GCATATCCTCAAAAGTATCAGGTACCTCAGGTATACAATACAAATATGAAGGATTAATTACCATT
1 GCATATCCTCAAAAGTATCAGGTACCTCAAGTATACAATACAAATATGAAGAATCAATTACCATT
* * *
7265377 ACATCCGACCATATATTCCATGTTGGTGTAACACAAATGGTTAACATTGATAATAATAGCATTGA
66 ACACCCGACCATATATTCCATGTTGGTGTAAAACAAATGGTAAACATTGATAATAATAGCATTGA
*
7265442 TTTTCTTAATATTCAATCATTTGTATGGCAGGATGTAGTGATAACCAATCCTTAATATTTGTATG
131 TTTTCTTAATATTCAATCATTTGTATGGCAGGATGTAATGATAACCAATCCTTAATATTTGTATG
* * * **
7265507 GCATACTTGAGGTTTCTGATATTCTTAAGGGTGTGTGCCTTGATGTGGCTGATAATACATGTTAT
196 GCATACCTAAAGTGCCTGATATTCTTAAGGGTGTGTGCCTTGATGTGGCTGATAATACATGTTAT
7265572 CAACATCAAGGT
261 CAACATCAAGGT
* ** * * * *
7265584 GCATATCCTCAAGAGTATCAGG-ATGTTCAAGTATGCCATACAATTATGAAGAATCGATTACCAT
1 GCATATCCTCAAAAGTATCAGGTA-CCTCAAGTATACAATACAAATATGAAGAATCAATTACCAT
* * *
7265648 TACACCCCCG-CCATATATTCCATGTTGGTGTAAAACCAGTGGTAAACATTGATAATAATATCAT
65 TACA--CCCGACCATATATTCCATGTTGGTGTAAAACAAATGGTAAACATTGATAATAATAGCAT
* * * * * * *
7265712 TGATTTTCTTCATATTCTAA-CATTTGTATGGCATGATGTAATGGTAATCGATTCTTCATATTTG
128 TGATTTTCTTAATATTC-AATCATTTGTATGGCAGGATGTAATGATAACCAATCCTTAATATTTG
7265776 TATGGCATACCTAAAGTGCCTGATATTCTT
192 TATGGCATACCTAAAGTGCCTGATATTCTT
7265806 GTTATCGACA
Statistics
Matches: 189, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
271 1 0.01
272 56 0.30
273 127 0.67
274 5 0.03
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (272 bp):
GCATATCCTCAAAAGTATCAGGTACCTCAAGTATACAATACAAATATGAAGAATCAATTACCATT
ACACCCGACCATATATTCCATGTTGGTGTAAAACAAATGGTAAACATTGATAATAATAGCATTGA
TTTTCTTAATATTCAATCATTTGTATGGCAGGATGTAATGATAACCAATCCTTAATATTTGTATG
GCATACCTAAAGTGCCTGATATTCTTAAGGGTGTGTGCCTTGATGTGGCTGATAATACATGTTAT
CAACATCAAGGT
Found at i:7267233 original size:365 final size:365
Alignment explanation
Indices: 7266553--7267357 Score: 1017
Period size: 365 Copynumber: 2.2 Consensus size: 365
7266543 CTCAAATTAG
* * * * * *
7266553 CTAGAATAGTTTCCTCACTTAGTCCGGTGGAAACATCCCTAATTTGCTGC-TCCAACTCCATCAC
1 CTAGAATAGTTTCCTCGCTTAGTCCAGTGCAAACATCCCCAATTTGCT-CTTCCAACTCCAACAG
* * * *
7266617 TTCCTACAAAATAAACGACACGAGCTTTTAAAATCCTAAGTAATTTCCATTGAACTCAAAATATT
65 TTCCTACAAAATAAACAACAAGAGCTTTTAAAATCCTAAGCAATTCCCATTGAACTCAAAATATT
7266682 TGAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCC
130 TGAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCC
* * * ** * * *
7266747 TCATGTATTCCATACAAATATTAAGGATTGATTATCATCACATGTCTTCCATATATTCTATGTTG
195 TCAGGCATGCCATACAAATAGGAAGGATTGATTATCATCACATGCCTGCCATATATTCCATGTTG
* * * *
7266812 GTGCAAAACCAGTGCTAAACATTGATAATAATTGCATTGATTTCTTAATATTCAAACATTGATAT
260 GTGCAAAACCAGTGCTAAACATTAATAAAAATAGCATTGATTTCTTAATATTCAAACATTAATAT
* * * *
7266877 TCTAGTTGTTACAGACTGATGTTTTCATCTTCTTAGATTG-
325 TCCAATTGTTACAGACTGATATTTTCATCTTCATAGATTGA
* *
7266917 GTGAGAATATTTTCCTCGCTTAGTCCAGTGCAAACATCCCCAATTTGCTCTTCCAACTCCAACAG
1 CT-AGAATAGTTTCCTCGCTTAGTCCAGTGCAAACATCCCCAATTTGCTCTTCCAACTCCAACAG
* * *
7266982 TTCCTACAAAATAAGCAACAAGAGCTTTTAAAA-CTCTAAGCAATTCCCATTGGACTCTAAATAT
65 TTCCTACAAAATAAACAACAAGAGCTTTTAAAATC-CTAAGCAATTCCCATTGAACTCAAAATAT
* * ** * * *
7267046 TTGAGTGTTACCTCATAAGATATGTTATCTACATCTAGGTGCATATCCTCGATAATATCAGGATC
129 TTGAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATC
* * *
7267111 CTCAGGCATGCCTTACAAATAGGATGGATTGATTA-CAATCACAT-CCTGCCTTATATTCCATGT
194 CTCAGGCATGCCATACAAATAGGAAGGATTGATTATC-ATCACATGCCTGCCATATATTCCATGT
* * * *
7267174 TGGTGCAAAACTAGTGTTAAACATTAATAAAAATAGCATTGATTTCCTTCATGTTCAAACATTAA
258 TGGTGCAAAACCAGTGCTAAACATTAATAAAAATAGCATTGATTT-CTTAATATTCAAACATTAA
** * *
7267239 TATTCCAATTGTTATGGATTGATATTTTCGTCTTCATAGATTGA
322 TATTCCAATTGTTACAGACTGATATTTTCATCTTCATAGATTGA
* ** * * **
7267283 CTAGAATAGTTTCCTCGCTTAGTCCCGCACAAATATCCCCAATTTGCTATTCCAACTCCTGCAGT
1 CTAGAATAGTTTCCTCGCTTAGTCCAGTGCAAACATCCCCAATTTGCTCTTCCAACTCCAACAGT
*
7267348 TTCTACAAAA
66 TCCTACAAAA
7267358 ATCAAAAGAA
Statistics
Matches: 376, Mismatches: 59, Indels: 11
0.84 0.13 0.02
Matches are distributed among these distances:
364 59 0.16
365 316 0.84
366 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (365 bp):
CTAGAATAGTTTCCTCGCTTAGTCCAGTGCAAACATCCCCAATTTGCTCTTCCAACTCCAACAGT
TCCTACAAAATAAACAACAAGAGCTTTTAAAATCCTAAGCAATTCCCATTGAACTCAAAATATTT
GAGTGTTACCTCATAAGATATGTTATCGACATCAAGGCACATATCCTCAAGAATATCAAGATCCT
CAGGCATGCCATACAAATAGGAAGGATTGATTATCATCACATGCCTGCCATATATTCCATGTTGG
TGCAAAACCAGTGCTAAACATTAATAAAAATAGCATTGATTTCTTAATATTCAAACATTAATATT
CCAATTGTTACAGACTGATATTTTCATCTTCATAGATTGA
Found at i:7271348 original size:23 final size:23
Alignment explanation
Indices: 7271317--7271361 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7271307 TTATGATACC
*
7271317 TGACCTGGATTCTCATCTGATAT
1 TGACATGGATTCTCATCTGATAT
*
7271340 TGACATGGATTCTGATCTGATA
1 TGACATGGATTCTCATCTGATA
7271362 CATTACCTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (23 bp):
TGACATGGATTCTCATCTGATAT
Found at i:7271393 original size:24 final size:24
Alignment explanation
Indices: 7271301--7271393 Score: 100
Period size: 24 Copynumber: 3.9 Consensus size: 24
7271291 TCCTATTTGA
* * *
7271301 ATTCTGTTATGATACCTGACCTGG
1 ATTCTGATCTGATACTTGACCTGG
* *
7271325 ATTCTCATCTGATA-TTGACATGG
1 ATTCTGATCTGATACTTGACCTGG
7271348 ATTCTGATCTGATACATT-ACCTGG
1 ATTCTGATCTGATAC-TTGACCTGG
* *
7271372 ATTTTGATCTAATACTTGACCT
1 ATTCTGATCTGATACTTGACCT
7271394 AAAATATGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
23 22 0.39
24 33 0.58
25 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACCTGG
Found at i:7274130 original size:16 final size:16
Alignment explanation
Indices: 7274109--7274139 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7274099 ATAAAAATTC
*
7274109 TTTTCTTTTATTTTCG
1 TTTTCTTTGATTTTCG
7274125 TTTTCTTTGATTTTC
1 TTTTCTTTGATTTTC
7274140 TTTCAAGCCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.13, G:0.06, T:0.74
Consensus pattern (16 bp):
TTTTCTTTGATTTTCG
Found at i:7279574 original size:30 final size:30
Alignment explanation
Indices: 7279508--7279574 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
7279498 GGACCTATAG
*
7279508 AGAGGTCATAAAGATCCTCAGTAACTATCT
1 AGAGGTCATAAAGATCCTCAGTAACTATCC
*
7279538 AGAGGTCATAAAGATCCTCAGTAACTGTCC
1 AGAGGTCATAAAGATCCTCAGTAACTATCC
*
7279568 ATAGGTC
1 AGAGGTC
7279575 CCGAAGAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (30 bp):
AGAGGTCATAAAGATCCTCAGTAACTATCC
Found at i:7284379 original size:30 final size:30
Alignment explanation
Indices: 7284307--7284366 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7284297 CCCGAAAGAC
7284307 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7284337 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7284367 TTGTCCGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:7290562 original size:519 final size:515
Alignment explanation
Indices: 7289469--7290818 Score: 1594
Period size: 519 Copynumber: 2.6 Consensus size: 515
7289459 TAATTTTTGT
* * **
7289469 AAAAAATGAGGAAGCAATTTTCAAAGTTTCTCATTTAAGATTTTAAGAAAATGAAAATTTTTAAA
1 AAAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAAGATTTTAAGAAAATGAATTTTTTTAAA
*** * * * *
7289534 AGTAAGAAAGCAATTTCCAAATTTTCTTACCCAGTATACTTTTTTCTAAAATCGGTAAGTCCTTT
66 AGTAAGAAAGTTTTTTCCAAAGTTTCTTACCCAGTAGAC-TATTTCCAAAAT-GGTAAGT-CTTT
* * * * *
7289599 AGGCCATCAGTAAGTCTTTAAAGCATGATGATTAAATCCTTCTGATCATATGTCAGTCTTTAGAG
128 AGGCCATCAGTAAGTCTTTAGAGCATGATGATTAAATCATTCGGGTCATATATCAGTCTTTAGA-
* *
7289664 A-ACGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAGGATGTTTTCATATGATTTGT
192 ACAAGATGATAAGTCCTT-GGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGT
* * ** * *
7289728 AAAAAAATGAGAAATCTATTTTCAAA-TTTCTCATTTAGGA-TTTT-CAAAAAAACTTTGAAAGT
256 -AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAAATTTTTAAAAAAAAACTTTAAAAGT
* * *
7289790 AAGAAAGAGATTTCCAAAGTTTCTTACCAGGTAGACTATTTCCAAAATTGGTAAGTCCTTCGAGG
320 AAGAAAGAGATTTCCAAAGATTCTTACCAGATAGACTATTTCCAAAATTGGTAAGTCCATCGAGG
* * * * * * *
7289855 CATTAGTAAGTTTTTCGGGCATGATGATTAAATCCTTCGGGTCATCTTTCAGTCATTCGAGCAAG
385 CATCAGTAAATCTTTCGAGCATAATGATTAAATCCTTCGGGTCATCTGTCAGTCATTCGAACAAG
* * *
7289920 ATGATAAGTCCTTCAGGCTTCAGGCCATCTATGAGACCTTTGAGCAAGATGTTTTCATATGATAT
450 ATGATAAGTCC-TC--GCTTCAGGCCATCTATAAGACCTTCGAGCAAGATGTTTCCATATGATAT
*
7289985 TTAT
512 TTAA
* * *
7289989 GAAAAATGAGAAAACAATTTTCAAAGTTTTTCATTTAAGATTTTTAGAAAATGAATTTTTTTAAA
1 AAAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAAGATTTTAAGAAAATGAATTTTTTTAAA
* *
7290054 AGTAATAAAGTTTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAAGTGGTAAGTCTTTAG
66 AGTAAGAAAGTTTTTTCCAAAGTTTCTTACCCAGTAGACTATTTCCAAAA-TGGTAAGTCTTTAG
* * * * * *
7290119 AGCCATCAGTAAGTCTTTCGAGCAGGATGATTAAATCATTCGGGTCATCTCTCATTCTTTCGAAC
130 -GCCATCAGTAAGTCTTTAGAGCATGATGATTAAATCATTCGGGTCATATATCAGTCTTTAGAAC
* * *
7290184 AAGATGATAAGTCATTTGGCCATCTATAAGACCTTCGGGTAGGATGTTTTCATATGATTTGTAAA
194 AAGATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGTAAA
* * *
7290249 AAATGAGAAAACGATTTTCAAAGTCTCTCATTTAATATTTTTAAAAAATGAAATTTTTCAAAAGT
259 AAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAAATTTTTAAAAAA--AAA-CTTT-AAAAGT
*
7290314 AAGAAAGCA-ATTTCTAAAGATTCTTACCCA-ATAGACTATTTCCCAAAATTGGTAAGTCCATCG
320 AAGAAAG-AGATTTCCAAAGATTCTTA-CCAGATAGACTATTT-CCAAAATTGGTAAGTCCATCG
* * * *
7290377 -GGCCATCAGTAAATCTTTCGAGTATAATGATTAAGTCCTTCGGGTTATCTGTCAGTCTTTCGAA
382 AGG-CATCAGTAAATCTTTCGAGCATAATGATTAAATCCTTCGGGTCATCTGTCAGTCATTCGAA
* * * *
7290441 CAAGATGATAAGT-C-C-C-TCGGGCCATCTATAAGACCTTCGGGTAGGATGTTTCCATATGATA
446 CAAGATGATAAGTCCTCGCTTCAGGCCATCTATAAGACCTTCGAGCAAGATGTTTCCATATGATA
7290502 TTTGAA
511 TTT-AA
** * *
7290508 AAAAAATGAGAAAACGGTTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAATTTTTTTTAA
1 AAAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAAGATTTTAAGAAAATGAATTTTTTTAAA
* * * * *
7290573 AGTAAGAAAGTTATTTT-GAAAGTTTCTTACCCAATAGATTATTTTCAAAATTGGTAAGTCCTTC
66 AGTAAGAAAGTT-TTTTCCAAAGTTTCTTACCCAGTAGACTATTTCCAAAA-TGGTAAGT-CTTT
* * * * * * *
7290637 GGGCCATCAATAAGTCTTTTGAGCATGATAATTAAATCATTCGAGTCATATATCAGTCTTTTGAG
128 AGGCCATCAGTAAGTCTTTAGAGCATGATGATTAAATCATTCGGGTCATATATCAGTCTTTAGAA
* * * *
7290702 CAAGATGATAAGTCCCTCGGGCTATCTATAAGACCTTCGGGCATGATATTTTCATATGATTTGTA
193 CAAGATGATAAGT-CCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGTA
* * *
7290767 AAAGAGTGAG--AGCGATTTTCAAAGTTTCTCATTTAAAATTTTCAAAAAAAAA
257 AAA-AATGAGAAAACGATTTTCAAAGTTTCTCATTTAAAATTTTTAAAAAAAAA
7290819 AAAGAAGAAA
Statistics
Matches: 712, Mismatches: 99, Indels: 41
0.84 0.12 0.05
Matches are distributed among these distances:
517 26 0.04
518 102 0.14
519 295 0.41
520 150 0.21
521 5 0.01
522 4 0.01
523 3 0.00
524 40 0.06
525 87 0.12
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (515 bp):
AAAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAAGATTTTAAGAAAATGAATTTTTTTAAA
AGTAAGAAAGTTTTTTCCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATGGTAAGTCTTTAGG
CCATCAGTAAGTCTTTAGAGCATGATGATTAAATCATTCGGGTCATATATCAGTCTTTAGAACAA
GATGATAAGTCCTTGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGTAAAAA
ATGAGAAAACGATTTTCAAAGTTTCTCATTTAAAATTTTTAAAAAAAAACTTTAAAAGTAAGAAA
GAGATTTCCAAAGATTCTTACCAGATAGACTATTTCCAAAATTGGTAAGTCCATCGAGGCATCAG
TAAATCTTTCGAGCATAATGATTAAATCCTTCGGGTCATCTGTCAGTCATTCGAACAAGATGATA
AGTCCTCGCTTCAGGCCATCTATAAGACCTTCGAGCAAGATGTTTCCATATGATATTTAA
Found at i:7290731 original size:261 final size:259
Alignment explanation
Indices: 7289469--7290815 Score: 1468
Period size: 259 Copynumber: 5.2 Consensus size: 259
7289459 TAATTTTTGT
* * * * *
7289469 AAAAAATGAGGAAGCAATTTTCAAAGTTTCTCATTTAAGATTTTAAGAAAATGAAAATTTTTAAA
1 AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAAATTTTTTAAA
* * * * * * *
7289534 AGTAAGAAAGCAATTTCCAAATTTTCTTACCCAGTATACTTTTTTCTAAAATCGGTAAGTCCTTT
66 AGTAAGAAAGCAATTTTCAAAGTTTCTTACCCAGTAGAC-TATTTCCAAAATTGGTAAGTCCTTC
* ** * * * *
7289599 AGGCCATCAGTAAGTCTTTAAAGCATGATGATTAAATCCTTCTGATCATATGTCAGTCTTTAGAG
130 GGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTCTTTCGAG
* * *
7289664 -AACGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAGGATGTTTTCATATGATTTGT
195 CAA-GATGATAAGTCCCTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGA
7289728 A
259 A
* * * * *
7289729 AAAAAATGAGAAATCTATTTTCAAA-TTTCTCATTTAGGATTTTC--AAAA--AAA--CTTTGAA
1 AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAAATTTTTTAAA
*
7289787 AGTAAGAAAG-AGATTTCCAAAGTTTCTTA-CCAGGTAGACTATTTCCAAAATTGGTAAGTCCTT
66 AGTAAGAAAGCA-ATTTTCAAAGTTTCTTACCCA-GTAGACTATTTCCAAAATTGGTAAGTCCTT
* * * * *
7289850 CGAGG-CATTAGTAAGTTTTTCGGGCATGATGATTAAATCCTTCGGGTCATCTTTCAGTCATTCG
129 CG-GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTCTTTCG
* * * * *
7289914 AGCAAGATGATAAGTCCTTCAGGCTTCAGGCCATCTATGAGACCTTTGAGCAAGATGTTTTCATA
193 AGCAAGATGATAAGT-C--C---C-TCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATA
* *
7289979 TGATATTTAT
251 TGAT-TTGAA
* * * * *
7289989 GAAAAATGAGAAAACAATTTTCAAAGTTTTTCATTTAAGATTTTTAGAAAATGAATTTTTTTAAA
1 AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAAATTTTTTAAA
* ** * * * *
7290054 AGTAATAAAG-TTTTTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAAGTGGTAAGTCTTTA
66 AGTAAGAAAGCAATTTT-CAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGTAAGTCCTTC
* * * * * *
7290118 GAGCCATCAGTAAGTCTTTCGAGCAGGATGATTAAATCATTCGGGTCATCTCTCATTCTTTCGAA
130 GGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTCTTTCGAG
* ** * *
7290183 CAAGATGATAAGT-CATTTGGCCATCTATAAGACCTTCGGGTAGGATGTTTTCATATGATTTG-T
195 CAAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGAA
* * * * *
7290246 AAAAAATGAGAAAACGATTTTCAAAGTCTCTCATTTAATATTTTTAAAAAATGAAATTTTTCAAA
1 AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAAATTTTTTAAA
* * *
7290311 AGTAAGAAAGCAA-TTTCTAAAGATTCTTACCCAATAGACTATTTCCCAAAATTGGTAAGTCCAT
66 AGTAAGAAAGCAATTTTC-AAAGTTTCTTACCCAGTAGACTATTT-CCAAAATTGGTAAGTCCTT
* * * * *
7290375 CGGGCCATCAGTAAATCTTTCGAGTATAATGATTAAGTCCTTCGGGTTATCTGTCAGTCTTTCGA
129 CGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTCTTTCGA
* * *
7290440 ACAAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCGGGTAGGATGTTTCCATATGATATTT
194 GCAAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATG--ATTT
7290505 GAA
257 GAA
* * *
7290508 AAAAAATGAGAAAACGGTTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAATTTTTTTTAA
1 AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAAATTTTTTAAA
** * * * *
7290573 AGTAAGAAAGTTATTTTGAAAGTTTCTTACCCAATAGATTATTTTCAAAATTGGTAAGTCCTTCG
66 AGTAAGAAAGCAATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGTAAGTCCTTCG
* * * * * * * *
7290638 GGCCATCAATAAGTCTTTTGAGCATGATAATTAAATCATTCGAGTCATATATCAGTCTTTTGAGC
131 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGC
* * * *
7290703 AAGATGATAAGTCCCTCGGGCTATCTATAAGACCTTCGGGCATGATATTTTCATATGATTTGTA
196 AAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGAA
* * * * *
7290767 AAAGAGTGAG--AGCGATTTTCAAAGTTTCTCATTTAAAATTTTCAAAAAA
1 AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAA
7290816 AAAAAAGAAG
Statistics
Matches: 914, Mismatches: 143, Indels: 63
0.82 0.13 0.06
Matches are distributed among these distances:
252 85 0.09
253 41 0.04
255 4 0.00
256 1 0.00
257 132 0.14
258 86 0.09
259 148 0.16
260 46 0.05
261 143 0.16
262 92 0.10
263 8 0.01
265 2 0.00
266 4 0.00
267 120 0.13
268 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (259 bp):
AAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAAGATTTTCAGAAAATGAAATTTTTTAAA
AGTAAGAAAGCAATTTTCAAAGTTTCTTACCCAGTAGACTATTTCCAAAATTGGTAAGTCCTTCG
GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGC
AAGATGATAAGTCCCTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTTCATATGATTTGAA
Found at i:7290884 original size:29 final size:27
Alignment explanation
Indices: 7290814--7290884 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
7290804 ATTTTCAAAA
7290814 AAAAAAAAGAAGAAAAATGAAAAAATTAG
1 AAAAAAAAG--GAAAAATGAAAAAATTAG
* **
7290843 -AAAAAAAGGAAAATTGATGAAATATAG
1 AAAAAAAAGGAAAAATGAAAAAAT-TAG
7290870 AAAAAAAAGGAAAAA
1 AAAAAAAAGGAAAAA
7290885 CAAGAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 12 0.33
27 3 0.08
28 21 0.58
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.11
Consensus pattern (27 bp):
AAAAAAAAGGAAAAATGAAAAAATTAG
Found at i:7290891 original size:27 final size:28
Alignment explanation
Indices: 7290836--7290899 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 28
7290826 AAAAATGAAA
** *
7290836 AAAT-TAG-AAAAAAAGGAAAATTGATG
1 AAATATAGAAAAAAAAGGAAAATACAAG
7290862 AAATATAGAAAAAAAAGGAAAA-ACAAG
1 AAATATAGAAAAAAAAGGAAAATACAAG
*
7290889 AAAAATA-AAAA
1 AAATATAGAAAA
7290900 TAAATAAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 8 0.25
27 11 0.34
28 13 0.41
ACGTcount: A:0.72, C:0.02, G:0.14, T:0.12
Consensus pattern (28 bp):
AAATATAGAAAAAAAAGGAAAATACAAG
Found at i:7293976 original size:18 final size:18
Alignment explanation
Indices: 7293953--7293999 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
7293943 CTTCATAAGC
7293953 ATAACTTGATTCGATCAA
1 ATAACTTGATTCGATCAA
*
7293971 ATAACTTGATTTGATCAA
1 ATAACTTGATTCGATCAA
7293989 ATAACTTGATT
1 ATAACTTGATT
7294000 AAGGGTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (18 bp):
ATAACTTGATTCGATCAA
Found at i:7297040 original size:85 final size:85
Alignment explanation
Indices: 7296944--7297103 Score: 243
Period size: 85 Copynumber: 1.9 Consensus size: 85
7296934 TTAAACATTA
*
7296944 TATTTTATCTTTGTTTTA-GATATTTTAGTTTAAATAGATGTTA-GTATTTCAATTAGGATTTAG
1 TATTTTATCTTTGTTTTAGGA-ATTTTAGTTTAAATAG-TGTTATGTATTTCAATTAGGATTTAA
7297007 GATATTATTTTAAATAATATTT
64 GATATTATTTTAAATAATATTT
* * * *
7297029 TATTTTATCTTTGTTTTAGGAATTTTAGTTTAAATAGTTTTATGTTTTTTAATTTGGATTTAAGA
1 TATTTTATCTTTGTTTTAGGAATTTTAGTTTAAATAGTGTTATGTATTTCAATTAGGATTTAAGA
7297094 TATTATTTTA
66 TATTATTTTA
7297104 GGAATTATCT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
84 4 0.06
85 62 0.91
86 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (85 bp):
TATTTTATCTTTGTTTTAGGAATTTTAGTTTAAATAGTGTTATGTATTTCAATTAGGATTTAAGA
TATTATTTTAAATAATATTT
Found at i:7297751 original size:17 final size:17
Alignment explanation
Indices: 7297726--7297759 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7297716 CGTTATCCCA
*
7297726 ATTTATTTATTTTATTT
1 ATTTATTTATTTAATTT
*
7297743 ATTTGTTTATTTAATTT
1 ATTTATTTATTTAATTT
7297760 TTATCTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTATTTATTTAATTT
Found at i:7311808 original size:219 final size:220
Alignment explanation
Indices: 7311418--7311854 Score: 619
Period size: 219 Copynumber: 2.0 Consensus size: 220
7311408 TAATTTGTTT
* *
7311418 ATGAATTTCCGTATGCGTACTTTATGTGTAAACATAAGAAATTCATACTAAGTGGATGAATTTCT
1 ATGAATTTCCGTATGCGCACTTTATGTGTAAACATAAGAAATTCATACAAAGTGGATGAATTTCT
* * * * *
7311483 GTATGGGAACTTTATATGTAAACTTAAGAAATTCATACTAAGTGGATTAATTTCCGTATGGGCAC
66 GTATGAGAACTTTATATGTAAACTTAAGAAATTCATACTAAGTGAATGAATTTACGTATGGGAAC
* * * * *
7311548 TTTATGTGTAAAATTAAGAAATTCATACTAAGTGGATGAATTTTCGTATGGGCACTTTATGTG-T
131 TTTATGTGCAAAACTAAGAAATTCATAATAAGTGGATGAATTTCCGTATGGGCACTTTATGTGCA
*
7311612 AAACTTAAGAAATCCATACTAAGTGG
196 AAAC-TAAGAAATCCATAATAAGTGG
* *
7311638 ATGAA-TTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACAAAGTGGATGAATTT-T
1 ATGAATTTCCGTATGCGCACTTTATGTGTAAACATAAGAAATTCATACAAAGTGGATGAATTTCT
* *
7311701 CGTATGAGAACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGAATGAATTTATGTATGGGAA
66 -GTATGAGAACTTTATATGTAAACTTAAGAAATTCATACTAAGTGAATGAATTTACGTATGGGAA
* * ** * *
7311766 CTTTGTTTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTGGCACTTTGTGTGC
130 CTTTATGTGCAAAACTAAGAAATTCATAATAAGTGGATGAATTTCCGTATGGGCACTTTATGTGC
*
7311831 AAAACTAAGAAATTCATAATAAGT
195 AAAACTAAGAAATCCATAATAAGT
7311855 TTATGGATTT
Statistics
Matches: 191, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
218 1 0.01
219 181 0.95
220 9 0.05
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (220 bp):
ATGAATTTCCGTATGCGCACTTTATGTGTAAACATAAGAAATTCATACAAAGTGGATGAATTTCT
GTATGAGAACTTTATATGTAAACTTAAGAAATTCATACTAAGTGAATGAATTTACGTATGGGAAC
TTTATGTGCAAAACTAAGAAATTCATAATAAGTGGATGAATTTCCGTATGGGCACTTTATGTGCA
AAACTAAGAAATCCATAATAAGTGG
Found at i:7311871 original size:55 final size:55
Alignment explanation
Indices: 7311418--7311854 Score: 583
Period size: 55 Copynumber: 8.0 Consensus size: 55
7311408 TAATTTGTTT
* * *
7311418 ATGAATTTCCGTATGCGTACTTTATGTGTAAACATAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * *
7311473 ATGAATTTCTGTATGGGAACTTTATATGTAAACTTAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
7311528 ATTAATTTCCGTATGGGCACTTTATGTGTAAAATTAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
7311583 ATGAATTTTCGTATGGGCACTTTATGTGTAAACTTAAGAAATCCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
7311638 ATGAA-TTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACAAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * * *
7311692 ATGAATTTTCGTATGAGAACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGA
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
** * * * * * **
7311747 ATGAATTTATGTATGGGAACTTTGTTTGCAAAAC-TAAGAAATTCATAATAAGTTT
1 ATGAATTTCCGTATGGGCACTTTATGTG-TAAACTTAAGAAATTCATACTAAGTGG
* * * *
7311802 ATGAATTTCCGTATTGGCACTTTGTGTGCAAAAC-TAAGAAATTCATAATAAGT
1 ATGAATTTCCGTATGGGCACTTTATGTG-TAAACTTAAGAAATTCATACTAAGT
7311855 TTATGGATTT
Statistics
Matches: 344, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
54 51 0.15
55 289 0.84
56 4 0.01
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (55 bp):
ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:7311885 original size:55 final size:55
Alignment explanation
Indices: 7311773--7311887 Score: 142
Period size: 55 Copynumber: 2.1 Consensus size: 55
7311763 GAACTTTGTT
** * *
7311773 TGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTGGCACTTTGTG
1 TGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTAACACGTGGTG
* ** *
7311828 TGCAAAACTAAGAAATTCATAATAAGTTTATGGATTTTTGTATTAATA-GTGGATG
1 TGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTAACACGTGG-TG
7311883 TGCAA
1 TGCAA
7311888 CCCACGTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 2 0.04
55 49 0.96
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (55 bp):
TGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTAACACGTGGTG
Found at i:7312213 original size:46 final size:46
Alignment explanation
Indices: 7312162--7312249 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
7312152 ATAGGTGAAG
*
7312162 AACAATGCATAATTGGAATAAAAGGATGTCATAAATT-AAAATGTAT
1 AACAATGCATAATTGGAATAAAAGGATGCCAT-AATTGAAAATGTAT
* *
7312208 AACAATGCATAATTGGCATGAAAGGATGCCATAATTGAAAAT
1 AACAATGCATAATTGGAATAAAAGGATGCCATAATTGAAAAT
7312250 ACATAGCGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 4 0.11
46 34 0.89
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (46 bp):
AACAATGCATAATTGGAATAAAAGGATGCCATAATTGAAAATGTAT
Found at i:7322850 original size:21 final size:21
Alignment explanation
Indices: 7322817--7322860 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7322807 ACTCTGGGAG
* * *
7322817 CTAGTTCCTCTCGAGCTGCTC
1 CTAGATCCACTCGAGCTCCTC
*
7322838 CTAGATCCACTCGTGCTCCTC
1 CTAGATCCACTCGAGCTCCTC
7322859 CT
1 CT
7322861 CCTCCTTCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.11, C:0.41, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGATCCACTCGAGCTCCTC
Found at i:7326743 original size:19 final size:19
Alignment explanation
Indices: 7326703--7326743 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7326693 TACAAAAATG
* *
7326703 GTATCGGTACCGTAATAGA
1 GTATCGGTACCATAATACA
*
7326722 GTATCGGTACCATAGTACA
1 GTATCGGTACCATAATACA
7326741 GTA
1 GTA
7326744 GAATCGATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (19 bp):
GTATCGGTACCATAATACA
Found at i:7327195 original size:55 final size:55
Alignment explanation
Indices: 7327120--7327351 Score: 231
Period size: 54 Copynumber: 4.3 Consensus size: 55
7327110 TAATTTGTTT
* ** * * * *
7327120 ATGAATTTCAGTATATGCACTTAATGTG-TAAACTTAAGAAATTCATACTAAGTGG
1 ATGAATTTCTGTATGGGCACTTTATGTGCAAAAC-TAAGAAATTCATAATAAGTAG
* *
7327175 ATGAATTTCTGTATGGGCACTTTATGTG-TAAACTTAAGAAATTCATACTAAGTAG
1 ATGAATTTCTGTATGGGCACTTTATGTGCAAAAC-TAAGAAATTCATAATAAGTAG
* * * *
7327230 ATGAATTT-TGTATGGTCACTTTGTGTGCAAAACTAAGAAAGTCATAATAAGTAT
1 ATGAATTTCTGTATGGGCACTTTATGTGCAAAACTAAGAAATTCATAATAAGTAG
* * * **
7327284 ATGAAATTCCT-TATTGGCAC-TTGTGTGCAAAACTAAGAAATTCATAATAAGTTT
1 ATG-AATTTCTGTATGGGCACTTTATGTGCAAAACTAAGAAATTCATAATAAGTAG
*
7327338 ATGAATTTTTGTAT
1 ATGAATTTCTGTAT
7327352 TGATAGTGGA
Statistics
Matches: 155, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
53 5 0.03
54 76 0.49
55 73 0.47
56 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (55 bp):
ATGAATTTCTGTATGGGCACTTTATGTGCAAAACTAAGAAATTCATAATAAGTAG
Found at i:7327303 original size:109 final size:110
Alignment explanation
Indices: 7327149--7327351 Score: 252
Period size: 109 Copynumber: 1.9 Consensus size: 110
7327139 CTTAATGTGT
* * * * *
7327149 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTTTATGTG-TAAACTTAAG
1 AAACTTAAGAAAGTCATAATAAGTAGATGAATTCCTGTATGGGCAC-TTATGTGCAAAAC-TAAG
*
7327213 AAATTCATACTAAGTAGATGAA-TTTTGTATGGTCACTTTGTGTGCA
64 AAATTCATAATAAGTAGATGAATTTTTGTATGGTCACTTTGTGTGCA
* * *
7327259 AAAC-TAAGAAAGTCATAATAAGTATATGAAATTCCT-TATTGGCACTTGTGTGCAAAACTAAGA
1 AAACTTAAGAAAGTCATAATAAGTAGATG-AATTCCTGTATGGGCACTTATGTGCAAAACTAAGA
**
7327322 AATTCATAATAAGTTTATGAATTTTTGTAT
65 AATTCATAATAAGTAGATGAATTTTTGTAT
7327352 TGATAGTGGA
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
108 29 0.37
109 40 0.51
110 10 0.13
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (110 bp):
AAACTTAAGAAAGTCATAATAAGTAGATGAATTCCTGTATGGGCACTTATGTGCAAAACTAAGAA
ATTCATAATAAGTAGATGAATTTTTGTATGGTCACTTTGTGTGCA
Found at i:7327353 original size:54 final size:55
Alignment explanation
Indices: 7327093--7327353 Score: 239
Period size: 55 Copynumber: 4.8 Consensus size: 55
7327083 TGACTGTGCA
* * ** * * *
7327093 AAAAGTTAAAAAATTCATAATTTGTTTATGAATTTCAGTATAT-GCACTTAATGTG
1 AAAACTTAAGAAATTCATAATAAGTATATGAATTTCTGTAT-TGGCACTTTATGTG
* * ** *
7327148 TAAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTTTATGTG
1 AAAACTTAAGAAATTCATAATAAGTATATGAATTTCTGTATTGGCACTTTATGTG
* * * *
7327203 TAAACTTAAGAAATTCATACTAAGTAGATGAATTT-TGTA-TGGTCACTTTGTGTG
1 AAAACTTAAGAAATTCATAATAAGTATATGAATTTCTGTATTGG-CACTTTATGTG
* * *
7327257 CAAAAC-TAAGAAAGTCATAATAAGTATATGAAATTCCT-TATTGGCAC-TTGTGTG
1 -AAAACTTAAGAAATTCATAATAAGTATATG-AATTTCTGTATTGGCACTTTATGTG
* *
7327311 CAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTTTGTATTG
1 -AAAACTTAAGAAATTCATAATAAGTATATGAATTTCTGTATTG
7327354 ATAGTGGACA
Statistics
Matches: 176, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.04
54 75 0.43
55 90 0.51
56 4 0.02
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (55 bp):
AAAACTTAAGAAATTCATAATAAGTATATGAATTTCTGTATTGGCACTTTATGTG
Found at i:7331012 original size:13 final size:13
Alignment explanation
Indices: 7330994--7331026 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
7330984 TTGACTTTTT
7330994 CGGTCAAAGTCAA
1 CGGTCAAAGTCAA
7331007 CGGTCAAAGTCAA
1 CGGTCAAAGTCAA
*
7331020 CAGTCAA
1 CGGTCAA
7331027 CGGTAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.15
Consensus pattern (13 bp):
CGGTCAAAGTCAA
Found at i:7346840 original size:28 final size:28
Alignment explanation
Indices: 7346806--7346863 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
7346796 GTTTTCTCAA
7346806 AAGGGATTGTGGTTTATAAAGCCAAAAC
1 AAGGGATTGTGGTTTATAAAGCCAAAAC
7346834 AAGGGATTGTGGTTTATAAAGCCAAAAC
1 AAGGGATTGTGGTTTATAAAGCCAAAAC
7346862 AA
1 AA
7346864 ATATTATACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (28 bp):
AAGGGATTGTGGTTTATAAAGCCAAAAC
Found at i:7358041 original size:104 final size:104
Alignment explanation
Indices: 7357860--7358062 Score: 275
Period size: 104 Copynumber: 2.0 Consensus size: 104
7357850 TGATGTAGAG
* * * * *
7357860 TTGGATTCATGCATTATACAAAATGAAAATGTGTGTAGTCTCCTTGCCTGGATCAACTCTTTAAC
1 TTGGATTCATGCATTAAACAAAATGAAAATGTGTGCAGTCTCCTCGCCTGGATCAACGCCTTAAC
** * *
7357925 TCCTGCCTTTAATGTGGCTTGTGTATTTACACATCACGA
66 AACTGCCTTTAATGTGGCTCGTGTATTCACACATCACGA
* *
7357964 TTGGATTCATGCATTAAACAATAA-GGAAATGTGTGCAGTCTCCTCGCTTGGATCAACGCCTTAA
1 TTGGATTCATGCATTAAACAA-AATGAAAATGTGTGCAGTCTCCTCGCCTGGATCAACGCCTTAA
7358028 CAACTG-CTATTAATGTGGCTCGTGTATTCACACAT
65 CAACTGCCT-TTAATGTGGCTCGTGTATTCACACAT
7358063 GACTGTTGCT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
103 2 0.02
104 82 0.95
105 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (104 bp):
TTGGATTCATGCATTAAACAAAATGAAAATGTGTGCAGTCTCCTCGCCTGGATCAACGCCTTAAC
AACTGCCTTTAATGTGGCTCGTGTATTCACACATCACGA
Found at i:7358388 original size:87 final size:87
Alignment explanation
Indices: 7358263--7358476 Score: 252
Period size: 87 Copynumber: 2.5 Consensus size: 87
7358253 CGCAGGTCTA
* * * * *
7358263 GGAGGGCTTCCCATTTTGTGTTGTGTCTATCTCTCCAAAGACA-TTTCACTCTGTGTCC-ACTTG
1 GGAGGGCTTCCCGTTTTGCGTTGTGCCTATCTCTCCAAAGACATTTTCA-TCTGCGCCCAAC-TG
* * * **
7358326 TGCCTGGCGCTTAGTGTGCACCTG
64 CGCCTGACGCTTAGCGCACACCTG
* *
7358350 GGAGGGCTTCCCGTTTTGCGTTGTGCCTATCTCTCCAAAGGCATTTTGATCTGCGCCCAACTGCG
1 GGAGGGCTTCCCGTTTTGCGTTGTGCCTATCTCTCCAAAGACATTTTCATCTGCGCCCAACTGCG
*
7358415 CCTGACGCTTAGCGCACACTTG
66 CCTGACGCTTAGCGCACACCTG
* * *
7358437 GGAGGGCTTCTCGTTTTACGTTGCGCCTATCTCTCCAAAG
1 GGAGGGCTTCCCGTTTTGCGTTGTGCCTATCTCTCCAAAG
7358477 GCGCTTTACT
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
87 103 0.94
88 6 0.06
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (87 bp):
GGAGGGCTTCCCGTTTTGCGTTGTGCCTATCTCTCCAAAGACATTTTCATCTGCGCCCAACTGCG
CCTGACGCTTAGCGCACACCTG
Found at i:7366417 original size:39 final size:39
Alignment explanation
Indices: 7366317--7366468 Score: 121
Period size: 39 Copynumber: 3.9 Consensus size: 39
7366307 ATACACCCAG
* * * * **
7366317 TAAGGGCTTACCTTGTGCACAAAGCATAGGAGCCTACGG
1 TAAGGACTTACCATGAGCACAAAGCAGAGGAGCCTACAA
** *
7366356 TAA-GATCTTATCC-TCTGCACAAAGCAGAGGAACCTACAA
1 TAAGGA-CTTA-CCATGAGCACAAAGCAGAGGAGCCTACAA
* * * * * * *
7366395 TAAGGACTTACCTTGAGTACAAAGCCGATGAGCTTGCAG
1 TAAGGACTTACCATGAGCACAAAGCAGAGGAGCCTACAA
7366434 TAAGGACTTACCATGAGCACAAAG-AGAGGAGCCTA
1 TAAGGACTTACCATGAGCACAAAGCAGAGGAGCCTA
7366469 TGGTAATCAG
Statistics
Matches: 88, Mismatches: 21, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
38 10 0.11
39 74 0.84
40 4 0.05
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (39 bp):
TAAGGACTTACCATGAGCACAAAGCAGAGGAGCCTACAA
Found at i:7369889 original size:13 final size:13
Alignment explanation
Indices: 7369871--7369935 Score: 94
Period size: 13 Copynumber: 5.0 Consensus size: 13
7369861 GTTATAAATC
7369871 TATGACGCGCATT
1 TATGACGCGCATT
* *
7369884 TATGACACACATT
1 TATGACGCGCATT
7369897 TATGACGCGCATT
1 TATGACGCGCATT
* *
7369910 TATGACACACATT
1 TATGACGCGCATT
7369923 TATGACGCGCATT
1 TATGACGCGCATT
7369936 GAGCGTCATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:7369907 original size:26 final size:26
Alignment explanation
Indices: 7369871--7369935 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
7369861 GTTATAAATC
7369871 TATGACGCGCATTTATGACACACATT
1 TATGACGCGCATTTATGACACACATT
7369897 TATGACGCGCATTTATGACACACATT
1 TATGACGCGCATTTATGACACACATT
7369923 TATGACGCGCATT
1 TATGACGCGCATT
7369936 GAGCGTCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
TATGACGCGCATTTATGACACACATT
Found at i:7376679 original size:39 final size:39
Alignment explanation
Indices: 7376565--7376688 Score: 135
Period size: 39 Copynumber: 3.2 Consensus size: 39
7376555 GATGAGCCTA
** * * *
7376565 CGGTAAGGTGTTATCCTGTGCACAAAGC-AGAGGAGCCTG
1 CGGTAAGGACTTACCCTGAGCACAAAGCTA-AGGAGCTTG
* * *
7376604 CAGTAAGGACTTACCCTAAGCACAAA-CTCGAGGAGCTTG
1 CGGTAAGGACTTACCCTGAGCACAAAGCT-AAGGAGCTTG
7376643 CGGTAAGGACTTACCCTGAGCACAAAGCTAAGGAGCTTG
1 CGGTAAGGACTTACCCTGAGCACAAAGCTAAGGAGCTTG
*
7376682 TGGTAAG
1 CGGTAAG
7376689 CAGTAAGGTC
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 67 0.96
40 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (39 bp):
CGGTAAGGACTTACCCTGAGCACAAAGCTAAGGAGCTTG
Found at i:7381716 original size:24 final size:23
Alignment explanation
Indices: 7381689--7381745 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
7381679 AATACATAAT
7381689 TTAAATAATAACTAAAGTAATT-AA
1 TTAAATAATAACTAAA-T-ATTAAA
*
7381713 TTAAATAAATAAGTAAATATTAAA
1 TTAAAT-AATAACTAAATATTAAA
7381737 TTAAA-AATA
1 TTAAATAATA
7381746 TCGAAACTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 14 0.47
25 9 0.30
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (23 bp):
TTAAATAATAACTAAATATTAAA
Found at i:7386113 original size:5 final size:5
Alignment explanation
Indices: 7386105--7386149 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
7386095 TTTCATTCCA
* *
7386105 TTTAT TTTAT TTTAT TTTAT CTTAT GCTTCAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT --TTTAT TTTAT TTTAT TTT
7386150 TTCCAAACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 31 0.91
7 3 0.09
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (5 bp):
TTTAT
Found at i:7388613 original size:19 final size:19
Alignment explanation
Indices: 7388573--7388629 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
7388563 TATTTAATGC
* *
7388573 TATTATTATTTATTAT-TT
1 TATTATTATCTATTTTATT
*
7388591 TATTATT-TCTCTTTTTATT
1 TATTATTATCT-ATTTTATT
7388610 TATTATTATCTATTTTATT
1 TATTATTATCTATTTTATT
7388629 T
1 T
7388630 TGTTAAATCT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 2 0.06
18 10 0.31
19 17 0.53
20 3 0.09
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (19 bp):
TATTATTATCTATTTTATT
Found at i:7390311 original size:60 final size:59
Alignment explanation
Indices: 7390217--7390397 Score: 179
Period size: 60 Copynumber: 3.0 Consensus size: 59
7390207 AGTATGACTC
* * *
7390217 TCATTTTAAATTGGTCCAT-AAACATTTAAACATTTTAATTTCATCCCTAAACTATAAGTA
1 TCATTTTAAATTGGTCC-TCAAACTTTTGAACATTTCAATTTCATCCC-AAACTATAAGTA
* * * * * *
7390277 TCATTTTAAATTAGTCCTCGAACTTTTGAACATTTCATTTTCACCCCCAAACTATGA-CA
1 TCATTTTAAATTGGTCCTCAAACTTTTGAACATTTCAATTTCA-TCCCAAACTATAAGTA
* * *
7390336 TGCATTCTAAATTGGTCC-CTAAACTTTTTGAACATTCCAATTTCATCCCAAACTATATGTA
1 T-CATTTTAAATTGGTCCTC-AAAC-TTTTGAACATTTCAATTTCATCCCAAACTATAAGTA
7390397 T
1 T
7390398 ATGCTAATCA
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
59 4 0.04
60 70 0.72
61 23 0.24
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (59 bp):
TCATTTTAAATTGGTCCTCAAACTTTTGAACATTTCAATTTCATCCCAAACTATAAGTA
Found at i:7390635 original size:60 final size:60
Alignment explanation
Indices: 7390531--7390647 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 60
7390521 TGGAGATATA
* * * * *
7390531 TTTAGAAAGAGAGTTATAGTTTAGGGATGAAATTAGAATGTTCAAAAGTGTAAGGACTAG
1 TTTAGAAAGAGAGTTATAGGTCAGGGATGAAATGAAAATATTCAAAAGTGTAAGGACTAG
* *
7390591 TTTAGAATGAGA-TTCATAGGTCAGGGATGAAATGAAAATATTCAAAAGTTTAAGGAC
1 TTTAGAAAGAGAGTT-ATAGGTCAGGGATGAAATGAAAATATTCAAAAGTGTAAGGAC
7390648 CAATTTAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
59 2 0.04
60 47 0.96
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.29
Consensus pattern (60 bp):
TTTAGAAAGAGAGTTATAGGTCAGGGATGAAATGAAAATATTCAAAAGTGTAAGGACTAG
Found at i:7401569 original size:16 final size:15
Alignment explanation
Indices: 7401548--7401591 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
7401538 TTTGTTTTTA
7401548 AAATAAAAAATAAATT
1 AAATAAAAAAT-AATT
*
7401564 AAATAATTAAATAATT
1 AAATAA-AAAATAATT
7401580 AAATAAACAAAT
1 AAATAAA-AAAT
7401592 TAAAGAGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATAAAAAATAATT
Found at i:7401573 original size:8 final size:8
Alignment explanation
Indices: 7401555--7401585 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
7401545 TTAAAATAAA
7401555 AAATAAATT
1 AAAT-AATT
7401564 AAATAATT
1 AAATAATT
7401572 AAATAATT
1 AAATAATT
7401580 AAATAA
1 AAATAA
7401586 ACAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (8 bp):
AAATAATT
Found at i:7404326 original size:23 final size:23
Alignment explanation
Indices: 7404294--7404337 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7404284 GTTCACTAAA
*
7404294 AAAAATAAAAATAAAATGAAAAT
1 AAAAACAAAAATAAAATGAAAAT
*
7404317 AAAAACAAAAATATAATGAAA
1 AAAAACAAAAATAAAATGAAA
7404338 TGGGTTACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (23 bp):
AAAAACAAAAATAAAATGAAAAT
Found at i:7411482 original size:21 final size:21
Alignment explanation
Indices: 7411455--7411510 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
7411445 TGACACTTGG
7411455 TACCTAGCTAGCTACCTACAC
1 TACCTAGCTAGCTACCTACAC
* **
7411476 TATCTAGCTAGCTACCTATGC
1 TACCTAGCTAGCTACCTACAC
7411497 TACCTAGCTAGCTA
1 TACCTAGCTAGCTA
7411511 ATTGACCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.29
Consensus pattern (21 bp):
TACCTAGCTAGCTACCTACAC
Found at i:7411500 original size:9 final size:8
Alignment explanation
Indices: 7411455--7411506 Score: 50
Period size: 8 Copynumber: 6.2 Consensus size: 8
7411445 TGACACTTGG
7411455 TACCTAGC
1 TACCTAGC
* *
7411463 TAGCTACC
1 TACCTAGC
*
7411471 TACACTATC
1 TAC-CTAGC
*
7411480 TAGCTAGC
1 TACCTAGC
7411488 TACCTATGC
1 TACCTA-GC
7411497 TACCTAGC
1 TACCTAGC
7411505 TA
1 TA
7411507 GCTAATTGAC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
8 21 0.60
9 14 0.40
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.29
Consensus pattern (8 bp):
TACCTAGC
Found at i:7411503 original size:17 final size:17
Alignment explanation
Indices: 7411455--7411506 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
7411445 TGACACTTGG
*
7411455 TACCTA-GCTAGCTACC
1 TACCTATGCTAGCTAGC
7411471 TACACTAT-CTAGCTAGC
1 TAC-CTATGCTAGCTAGC
*
7411488 TACCTATGCTACCTAGC
1 TACCTATGCTAGCTAGC
7411505 TA
1 TA
7411507 GCTAATTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.29
Consensus pattern (17 bp):
TACCTATGCTAGCTAGC
Found at i:7417281 original size:55 final size:55
Alignment explanation
Indices: 7417122--7417784 Score: 772
Period size: 55 Copynumber: 12.2 Consensus size: 55
7417112 TGATACAGTC
* * * * *
7417122 ATTCACAAACTCATTGTGAATTACGT-AGGTTGCACACATAGTGTCAATACGGTA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* * * * * * *
7417176 ATTCACAAACTTATTATGAATTAC-TTAGGTTGCACACCTAGTGCTAATACGAAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* * * *
7417230 ATTCATAAACACATTATGAATTTTGTGGGGTTGCACACATAATGCCAATACGGAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* * *
7417285 ATTCATAAACTCATTATGAATTTCGTGTGGTTGCACACATAGTGTCAATACGAAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* *
7417340 ATTCATAAACTCATTATGAATTTCGTG-GGATTGCACACATAGTGCTAATATGGAA
1 ATTCATAAACTCATTATGAATTTCGTGAGG-TTGCACACATAGTGCCAATACGGAA
* *
7417395 ATTCATAAACTTC-TTATGAATTTCGTCG-GATTGCACACATAGTGCCAATACGAAAA
1 ATTCATAAAC-TCATTATGAATTTCGT-GAGGTTGCACACATAGTGCCAATACG-GAA
* * * * * **
7417451 ATTCATAATCTCGTTATGAATTTCATGAGG-TCCACACCTAGAACCAATACGGAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* * * * **
7417505 ATTCATAAACTCA-T-T-AATTTTGTGCGGTTGCACGCA-ATTTGCCAATACAAAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATA-GTGCCAATACGGAA
* * * * *
7417557 ATTTATACACTCATTATGAATTTCGTGGGGTTGTAAACATAGTGCCAATACGGAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* * * *
7417612 ATTCATAAATTCTTTATGAATTTCGTGAGGTTGCATACATAGTGCCAATACGAAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
*
7417667 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATAAGGAA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
* *
7417722 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATATGGTA
1 ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
7417777 ATT-ATAAA
1 ATTCATAAA
7417785 TATACATTAA
Statistics
Matches: 517, Mismatches: 78, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
51 10 0.02
52 26 0.05
53 3 0.01
54 85 0.16
55 364 0.70
56 29 0.06
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (55 bp):
ATTCATAAACTCATTATGAATTTCGTGAGGTTGCACACATAGTGCCAATACGGAA
Found at i:7423289 original size:54 final size:54
Alignment explanation
Indices: 7423240--7423372 Score: 158
Period size: 54 Copynumber: 2.5 Consensus size: 54
7423230 TATAGTGCTG
* * * *
7423240 ATACAGTCATTAACAAACTCATTCTGAATTACGTAGGTTGCATACATAGTCCCA
1 ATACAGTAATTAACAAACTCATTATGAATAACGTAGATTGCATACATAGTCCCA
* * * *
7423294 ATACGGTAATTTACAAACTCATTATGAATAACTTAGATTGCATACATAGTACCA
1 ATACAGTAATTAACAAACTCATTATGAATAACGTAGATTGCATACATAGTCCCA
* * * *
7423348 ATACGGAAATTCATAAACTCATTAT
1 ATACAGTAATTAACAAACTCATTAT
7423373 AAATTTCGTG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (54 bp):
ATACAGTAATTAACAAACTCATTATGAATAACGTAGATTGCATACATAGTCCCA
Found at i:7423413 original size:55 final size:55
Alignment explanation
Indices: 7423191--7424196 Score: 1093
Period size: 55 Copynumber: 18.3 Consensus size: 55
7423181 TACCAATATG
* * * * * * **
7423191 AAAATTCACAAACTCATTTTGAAATCCTTGGGG-TGCACATATAGTGCTGATACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
*** * * * * * * * *
7423245 GTCATTAACAAACTCATTCTGAATTACGT-AGGTTGCATACATAGTCCCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
** * * ** ** * * * *
7423299 GTAATTTACAAACTCATTATGAATAAC-TTAGATTGCATACATAGTACCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * **
7423353 GAAATTCATAAACTCATTATAAATTTCGTGGGGTTGCACACATAGTGTGAATACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* *
7423408 AAAATTCATAATCTCATTATGAATTTCGTGGGGTTACACACATAGTGCCAATACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * *
7423463 TAAATTCATAAACTCATTCTGAATTTCGTGGGGGTTGCACACATAGTGCCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGT-GGGGTTGCACACATAGTGCCAATACA
*
7423519 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAGTACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * *
7423574 GAAATTCATAAACTCATTATGAATTTCGTGGGGGTTGCACACATACTGCCAATAAA
1 AAAATTCATAAACTCATTATGAATTTCGT-GGGGTTGCACACATAGTGCCAATACA
* * * * *
7423630 AAAATTCATAAACTCATTATGAATTTCATGAGGTTGTACACATACTGCCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * **
7423685 GAAATTCAAAAATTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATATG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * * * * * ** *
7423740 AAAATTCATAAACTCGTTATGAATTTTGTGAGGTTACAGACAAACTTTCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * *
7423795 GAAATTCATAAAATCATTATGAATTTCATGAGG-TGCACACATAGTGCCAATACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * **
7423849 TAAATTCATAAACGCATTATGAATTTCATGGGGTTGCACACATAGTGCCAATATG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
*
7423904 AAAATTCATATACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
** * * *
7423959 AAAATTTGTAAAATCATTATGAATTTCGTGGGGTTGCATACATAGTGCCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * * ** * *
7424014 GAAATTCATAAACTCATTATGATTTTTGTGAGGTTATACATATAGTGCCAATACG
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * *
7424069 GAAATTCATAAAATCATTATGAATTTCGTGAGGTTGCACACGTAGTGCCAATACA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* * * *
7424124 TAAATTCATTAACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATGCA
1 AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
* *
7424179 GAAATTGATAAACTCATT
1 AAAATTCATAAACTCATT
7424197 CACATAGTGT
Statistics
Matches: 806, Mismatches: 140, Indels: 11
0.84 0.15 0.01
Matches are distributed among these distances:
53 3 0.00
54 146 0.18
55 556 0.69
56 101 0.13
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (55 bp):
AAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATACA
Found at i:7424216 original size:35 final size:35
Alignment explanation
Indices: 7424162--7424231 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
7424152 TGGGGTTGCA
* *
7424162 CACATAGTGCCAATGCAGAAATTGATAAACTCATT
1 CACATAGTGCCAATACAGAAATTGACAAACTCATT
* *
7424197 CACATAGTGTCAATACAGAAATTTACAAACTCATT
1 CACATAGTGCCAATACAGAAATTGACAAACTCATT
7424232 ATGAATTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.27
Consensus pattern (35 bp):
CACATAGTGCCAATACAGAAATTGACAAACTCATT
Found at i:7424264 original size:90 final size:91
Alignment explanation
Indices: 7424111--7424287 Score: 248
Period size: 90 Copynumber: 2.0 Consensus size: 91
7424101 GTTGCACACG
* ** * *
7424111 TAGTGCCAATACATAAATTCATTAACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAAT
1 TAGTGCCAATACAGAAATTCACAAACTCATTATGAATTTTGAGAGGTTGCACACATAGTGCCAAT
* * *
7424176 GC-AGAAATTGATAAACTCATTCACA
66 ACGAAAAATTCATAAACTCATTCACA
* * *
7424201 TAGTGTCAATACAGAAATTTACAAACTCATTATGAATTTTGAGAGGTTTCACACATAGTGCCAAT
1 TAGTGCCAATACAGAAATTCACAAACTCATTATGAATTTTGAGAGGTTGCACACATAGTGCCAAT
7424266 ACGAAAAATTCATAAACTCATT
66 ACGAAAAATTCATAAACTCATT
7424288 ATGAATTTCG
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
90 58 0.77
91 17 0.23
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (91 bp):
TAGTGCCAATACAGAAATTCACAAACTCATTATGAATTTTGAGAGGTTGCACACATAGTGCCAAT
ACGAAAAATTCATAAACTCATTCACA
Found at i:7424342 original size:146 final size:145
Alignment explanation
Indices: 7424055--7424342 Score: 396
Period size: 146 Copynumber: 2.0 Consensus size: 145
7424045 GGTTATACAT
* * * *
7424055 ATAGTGCCAATACGGAAATTCATAAAATCATTATGAATTTCGTGAGGTTGCACACGTAGTGCCAA
1 ATAGTGCCAATACAGAAATTCACAAAATCATTATGAATTTCGAGAGGTTGCACACATAGTGCCAA
* * * * * *
7424120 TACATAAATTCATTAACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATGCAGAAATT
66 TACAAAAATTCATAAACTCATTATGAATTTCGTGAGGTTCCACACATAGTGCCAATACAGAAATT
*
7424185 GATAAACTCATTCAC
131 CATAAACTCATTCAC
* * * * *
7424200 ATAGTGTCAATACAGAAATTTACAAACTCATTATGAATTTTGAGAGGTTTCACACATAGTGCCAA
1 ATAGTGCCAATACAGAAATTCACAAAATCATTATGAATTTCGAGAGGTTGCACACATAGTGCCAA
* * *
7424265 TACGAAAAATTCATAAACTCATTATGAATTTCGTGAGGTTCCACACCTAGTGCCAGTACTGAAAT
66 TAC-AAAAATTCATAAACTCATTATGAATTTCGTGAGGTTCCACACATAGTGCCAATACAGAAAT
7424330 TCATAAACTCATT
130 TCATAAACTCATT
7424343 ATGAATTTCG
Statistics
Matches: 123, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
145 59 0.48
146 64 0.52
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (145 bp):
ATAGTGCCAATACAGAAATTCACAAAATCATTATGAATTTCGAGAGGTTGCACACATAGTGCCAA
TACAAAAATTCATAAACTCATTATGAATTTCGTGAGGTTCCACACATAGTGCCAATACAGAAATT
CATAAACTCATTCAC
Found at i:7424342 original size:201 final size:200
Alignment explanation
Indices: 7423998--7424397 Score: 615
Period size: 201 Copynumber: 2.0 Consensus size: 200
7423988 GGGGTTGCAT
* * * * *
7423998 ACATAGTGCCAATACGGAAATTCATAAACTCATTATGATTTTTGTGAGGTTATACATATAGTGCC
1 ACATAGTGCCAATACAGAAATTCACAAACTCATTATGAATTTTGAGAGGTTATACACATAGTGCC
* * *
7424063 AATACGGAAATTCATAAAATCATTATGAATTTCGTGAGGTTGCACACGTAGTGCCAATACATAAA
66 AATACGAAAATTCATAAAATCATTATGAATTTCGTGAGGTTCCACACCTAGTGCCAATACATAAA
* * *
7424128 TTCATTAACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATGCAGAAATTGATAAACT
131 TTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATGCAGAAATTCATAAACT
7424193 CATTC
196 CATTC
* *
7424198 ACATAGTGTCAATACAGAAATTTACAAACTCATTATGAATTTTGAGAGGTT-TCACACATAGTGC
1 ACATAGTGCCAATACAGAAATTCACAAACTCATTATGAATTTTGAGAGGTTAT-ACACATAGTGC
* *
7424262 CAATACGAAAAATTCATAAACTCATTATGAATTTCGTGAGGTTCCACACCTAGTGCCAGTAC-TG
65 CAATACG-AAAATTCATAAAATCATTATGAATTTCGTGAGGTTCCACACCTAGTGCCAATACAT-
*
7424326 AAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATGCGGAAATTCATAA
128 AAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATGCAGAAATTCATAA
7424391 ACTCATT
193 ACTCATT
7424398 ATGAATTTTG
Statistics
Matches: 181, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
199 1 0.01
200 63 0.35
201 117 0.65
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (200 bp):
ACATAGTGCCAATACAGAAATTCACAAACTCATTATGAATTTTGAGAGGTTATACACATAGTGCC
AATACGAAAATTCATAAAATCATTATGAATTTCGTGAGGTTCCACACCTAGTGCCAATACATAAA
TTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCAATGCAGAAATTCATAAACT
CATTC
Found at i:7424351 original size:55 final size:54
Alignment explanation
Indices: 7424197--7424434 Score: 323
Period size: 55 Copynumber: 4.3 Consensus size: 54
7424187 TAAACTCATT
* * * * * *
7424197 CACATAGTGTCAATACAGAAATTTACAAACTCATTATGAATTTTGAGAGGTTTCA
1 CACATAGTGCCAATAC-GAAATTCATAAACTCATTATGAATTTCGTGAGGTTGCA
*
7424252 CACATAGTGCCAATACGAAAAATTCATAAACTCATTATGAATTTCGTGAGGTTCCA
1 CACATAGTGCCAATACG--AAATTCATAAACTCATTATGAATTTCGTGAGGTTGCA
* * *
7424308 CACCTAGTGCCAGTACTGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCA
1 CACATAGTGCCAATAC-GAAATTCATAAACTCATTATGAATTTCGTGAGGTTGCA
* *
7424363 CACATAGTGCCAATGCGGAAATTCATAAACTCATTATGAATTTTGTGAGGTTGCA
1 CACATAGTGCCAATAC-GAAATTCATAAACTCATTATGAATTTCGTGAGGTTGCA
7424418 CACATAGTGCCAATACG
1 CACATAGTGCCAATACG
7424435 GTAATTACAA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
54 2 0.01
55 114 0.70
56 46 0.28
57 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (54 bp):
CACATAGTGCCAATACGAAATTCATAAACTCATTATGAATTTCGTGAGGTTGCA
Found at i:7424894 original size:20 final size:20
Alignment explanation
Indices: 7424849--7424900 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
7424839 TTTACAATGA
* *
7424849 TAGTATCGATACCTTCTCAC
1 TAGTATCGATACCTCCACAC
* *
7424869 TGGTATCGATACCTCCACAT
1 TAGTATCGATACCTCCACAC
*
7424889 TAGTATCCATAC
1 TAGTATCGATAC
7424901 TACTTGTGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (20 bp):
TAGTATCGATACCTCCACAC
Found at i:7428396 original size:6 final size:6
Alignment explanation
Indices: 7428385--7428409 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7428375 AAGACACATA
7428385 GGTCAT GGTCAT GGTCAT GGTCAT G
1 GGTCAT GGTCAT GGTCAT GGTCAT G
7428410 ATACAAGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (6 bp):
GGTCAT
Found at i:7429518 original size:12 final size:11
Alignment explanation
Indices: 7429491--7429598 Score: 63
Period size: 12 Copynumber: 8.9 Consensus size: 11
7429481 TTATAAGAAG
*
7429491 AAGAAGAAAAA
1 AAGAAAAAAAA
7429502 AAGAAAAAAAA
1 AAGAAAAAAAA
7429513 ACAGAAGAAAAAA
1 A-AGAA-AAAAAA
* * *
7429526 AATAATAGAAA
1 AAGAAAAAAAA
7429537 AAGAAAATGAAAACA
1 AAG-AAA--AAAA-A
7429552 AAGAAGAAAAAA
1 AAGAA-AAAAAA
* * *
7429564 ATGAAAATGAGA
1 AAGAAAA-AAAA
7429576 AAGAAAAGAAAA
1 AAGAAAA-AAAA
7429588 AGAGAAAAAAA
1 A-AGAAAAAAA
7429599 TGAGAGATGA
Statistics
Matches: 74, Mismatches: 14, Indels: 17
0.70 0.13 0.16
Matches are distributed among these distances:
11 19 0.26
12 28 0.38
13 17 0.23
14 5 0.07
15 5 0.07
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.05
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:7429540 original size:35 final size:37
Alignment explanation
Indices: 7429499--7429617 Score: 115
Period size: 35 Copynumber: 3.3 Consensus size: 37
7429489 AGAAGAAGAA
* *
7429499 AAAAAGAAAAAAAAACAGAAGAAAAAAAAT-AATA-G
1 AAAAAGAAAAGAAAACAGAAGAAAAAAAATGAAAATG
7429534 AAAAAGAAAATGAAAACA-AAGAAGAAAAAAATGAAAATG
1 AAAAAGAAAA-GAAAACAGAAG-A-AAAAAAATGAAAATG
* *
7429573 AGAAAGAAAAGAAAA-AG-AG-AAAAAAATGAGAGATG
1 AAAAAGAAAAGAAAACAGAAGAAAAAAAATGA-AAATG
*
7429608 AAAAAAAAAA
1 AAAAAGAAAA
7429618 TATTTCACTT
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
34 10 0.14
35 25 0.35
36 7 0.10
37 11 0.15
38 8 0.11
39 10 0.14
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (37 bp):
AAAAAGAAAAGAAAACAGAAGAAAAAAAATGAAAATG
Found at i:7429541 original size:23 final size:22
Alignment explanation
Indices: 7429485--7429598 Score: 74
Period size: 23 Copynumber: 4.9 Consensus size: 22
7429475 TATATATTAT
*
7429485 AAGAAGAAGAAGAAAAAAAGAA
1 AAGAAAAAGAAGAAAAAAAGAA
*
7429507 AAAAAAACAGAAGAAAAAAA-ATA
1 AAGAAAA-AGAAGAAAAAAAGA-A
7429530 ATAGAAAAAGAAAATGAAAACAAAGAA
1 A-AGAAAAAG--AA-GAAAA-AAAGAA
*
7429557 GAA-AAAAATGAA-AATGAGAAAGAA
1 -AAGAAAAA-GAAGAA--AAAAAGAA
7429581 AAGAAAAAG-AGAAAAAAA
1 AAGAAAAAGAAGAAAAAAA
7429599 TGAGAGATGA
Statistics
Matches: 73, Mismatches: 5, Indels: 29
0.68 0.05 0.27
Matches are distributed among these distances:
21 4 0.05
22 7 0.10
23 23 0.32
24 16 0.22
25 5 0.07
26 10 0.14
27 6 0.08
28 2 0.03
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.04
Consensus pattern (22 bp):
AAGAAAAAGAAGAAAAAAAGAA
Found at i:7429586 original size:17 final size:17
Alignment explanation
Indices: 7429551--7429601 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
7429541 AAATGAAAAC
7429551 AAAGAAGAAAAAAATGAA
1 AAAG-AGAAAAAAATGAA
*
7429569 AATGAGAAAGAAAA-GAA
1 AAAGAGAAA-AAAATGAA
7429586 AAAGAGAAAAAAATGA
1 AAAGAGAAAAAAATGA
7429602 GAGATGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 4 0.14
17 18 0.62
18 7 0.24
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.06
Consensus pattern (17 bp):
AAAGAGAAAAAAATGAA
Found at i:7438306 original size:45 final size:45
Alignment explanation
Indices: 7438019--7438304 Score: 376
Period size: 45 Copynumber: 6.4 Consensus size: 45
7438009 TCTATGAATT
* * *
7438019 GGCATAAAATGTGCAATAAATGAAAATGCATAATGGTGCATTATC
1 GGCATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATC
* * *
7438064 GGCATTAAAGGTGTCATAAATGAAAATGCATAACGGTGCTTTATC
1 GGCATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATC
* * *
7438109 GACATAAAATGTACCATAAATGAAAATGCATAACGGTGCATTATC
1 GGCATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATC
* * *
7438154 GACATAAAAGGTGCCATAAATGAAAATTCATAACGGAGCATTATC
1 GGCATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATC
* * * *
7438199 AGCATAAAAGGTGCGATAAATGAAAATGCATAACGGAGCATTATT
1 GGCATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATC
* * * *
7438244 GGCATAAAAGCTGCCACT-AATGAAAATGCATGACGGTGCGTTATT
1 GGCATAAAAGGTGCCA-TAAATGAAAATGCATAACGGTGCATTATC
7438289 GGCATAAAAGGTGCCA
1 GGCATAAAAGGTGCCA
7438305 CTCATTGTAT
Statistics
Matches: 212, Mismatches: 28, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
45 211 1.00
46 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (45 bp):
GGCATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATC
Found at i:7450538 original size:44 final size:45
Alignment explanation
Indices: 7450420--7450539 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
7450410 AAATCTCTTA
* * *
7450420 CATTTAATCCCATAAGCTCATAAGCTTATTTTACCAATATACCCAC
1 CATTT-ATTCCATAAGCTCGTAATCTTATTTTACCAATATACCCAC
* * ***
7450466 CATTTGTTCCATAAGCTCGTAAGT-TTATTTTACCCATATACTTGC
1 CATTTATTCCATAAGCTCGTAA-TCTTATTTTACCAATATACCCAC
7450511 CA-TTATTCCATAAGCTCGTAATCTTATTT
1 CATTTATTCCATAAGCTCGTAATCTTATTT
7450540 GCATGGTTAC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
43 1 0.02
44 24 0.38
45 33 0.52
46 5 0.08
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (45 bp):
CATTTATTCCATAAGCTCGTAATCTTATTTTACCAATATACCCAC
Found at i:7468897 original size:2 final size:2
Alignment explanation
Indices: 7468890--7468916 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7468880 AATCTACAAA
7468890 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7468917 ATTTCTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7469074 original size:85 final size:85
Alignment explanation
Indices: 7468985--7469235 Score: 310
Period size: 85 Copynumber: 3.0 Consensus size: 85
7468975 ATTAATGGCT
* * * *
7468985 CGCAATGTAAGTCATATATGTGTGTCATAAATTTATGACACACAAATGTATGTCAAGC-AGATTT
1 CGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTGTGTCAAGCTA-ATTT
*
7469049 ATGATAGGGGCTTCAATTACG
65 ATGATAGGGGCTTCAATGACG
* * * *
7469070 CGCAATGTGAGTCATACATGCGTATCATACATTTATGACGCACAAATGTGTGTC-ATCTTAATTT
1 CGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTGTGTCAAGC-TAATTT
*
7469134 ATGATGGGGGCTTCAATGACG
65 ATGATAGGGGCTTCAATGACG
* * *
7469155 CGCAATGTAAGTCATACATGCCTGTCATAAATTTATGACGCAAAAATGTGTGTC-ATCTTAATTT
1 CGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTGTGTCAAGC-TAATTT
* **
7469219 AGGACGGGGGCTTCAAT
65 ATGATAGGGGCTTCAAT
7469236 AACACTCAAA
Statistics
Matches: 147, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
84 2 0.01
85 144 0.98
86 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (85 bp):
CGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTGTGTCAAGCTAATTTA
TGATAGGGGCTTCAATGACG
Found at i:7470908 original size:86 final size:85
Alignment explanation
Indices: 7470761--7470957 Score: 270
Period size: 86 Copynumber: 2.3 Consensus size: 85
7470751 CCAATATCAA
* * * *
7470761 TTCAACTTCACGACAAAGGAGACAACCATAATTTAGCTTAACTCAACAACGAGAAGTTATTTTTC
1 TTCAACTTCATGACAAAGGAGTCAACCATAATATAGCTTAACTCAACAACGAGAAGCTATTTTT-
7470826 AGCCTAGATTTCAAG-CTAGAT
65 AGCCTAGATTTCAAGTC-AGAT
* * *
7470847 TTCAAGTTCATGACGAAGGAGTCAACCATAATATAGCTTAACTCAACAACGAGGAGCTATTTTTA
1 TTCAACTTCATGACAAAGGAGTCAACCATAATATAGCTTAACTCAACAACGAGAAGCTATTTTTA
**
7470912 GCCTAGATTTTGAGTCAGAT
66 GCCTAGATTTCAAGTCAGAT
*
7470932 TTCTACTTCATGACAAAGGATGTCAA
1 TTCAACTTCATGACAAAGGA-GTCAA
7470958 GCTCAAGTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
85 34 0.35
86 63 0.65
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (85 bp):
TTCAACTTCATGACAAAGGAGTCAACCATAATATAGCTTAACTCAACAACGAGAAGCTATTTTTA
GCCTAGATTTCAAGTCAGAT
Found at i:7471313 original size:70 final size:70
Alignment explanation
Indices: 7471207--7471427 Score: 273
Period size: 70 Copynumber: 3.1 Consensus size: 70
7471197 GTAAGTATTG
* * *
7471207 ATACTTTTCCACAAGTATAAATACTTCCAAATTTTAAAAAAATGGAAAATGAGAAGGCTGTAAAG
1 ATACTTTTCCACAAATATAAATACTTTCAAATTTTAAAAAAATGGAAAATGAGAAGGCTGCAAAG
7471272 TATCA
66 TATCA
** * *
7471277 ATACTTTTCCACAAATATCGATAGTTTCAAAATTTAAAAAAATGGAAAATGAGAAGGCTGCAAAG
1 ATACTTTTCCACAAATATAAATACTTTCAAATTTTAAAAAAATGGAAAATGAGAAGGCTGCAAAG
* *
7471342 TTTTA
66 TATCA
* * * * *
7471347 ATATTTTTCCACAAATATTAATACTTTCGAATTTTTTTAAAAAAAATAGAAAATGAGAAGGCTAC
1 ATACTTTTCCACAAATATAAATACTTTC-AA--ATTTT-AAAAAAATGGAAAATGAGAAGGCTGC
7471412 AAAGTATCA
62 AAAGTATCA
7471421 A-ACTTTT
1 ATACTTTT
7471428 TTAAATAAAT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
70 85 0.67
71 2 0.02
73 8 0.06
74 32 0.25
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (70 bp):
ATACTTTTCCACAAATATAAATACTTTCAAATTTTAAAAAAATGGAAAATGAGAAGGCTGCAAAG
TATCA
Found at i:7471860 original size:20 final size:20
Alignment explanation
Indices: 7471832--7471884 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
7471822 AGGTTTGTTT
7471832 AACGGTATAATAATAATGTA
1 AACGGTATAATAATAATGTA
*
7471852 AATGGTATAATAATAATGTA
1 AACGGTATAATAATAATGTA
*
7471872 AACGGTAAAATAA
1 AACGGTATAATAA
7471885 AATAGGCGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (20 bp):
AACGGTATAATAATAATGTA
Found at i:7471923 original size:96 final size:98
Alignment explanation
Indices: 7471666--7471959 Score: 351
Period size: 100 Copynumber: 3.0 Consensus size: 98
7471656 TAATAACAAC
* *
7471666 TACAACTTAACCGGTTAAAATAAAATAGGCGCAACCTATTACGTTAAACTAGCCACCGATTTGTT
1 TACAACTTAAACGGTTAAAATAAAATAGGCGCAACCTATTACGTTAAACTAGCCACCGGTTTGTT
* * *
7471731 TAAAGGTGTAATAATAATGCAAGCGGTAAAATA
66 TAAAGGTATAATAATAATGTAAACGGTAAAATA
** * * * * **
7471764 TTTACAACTTAGCCGGTTAAAATAAAATAGGGGCAACCTTTTATGTTAAACTAGCTAAAGGTTTG
1 --TACAACTTAAACGGTTAAAATAAAATAGGCGCAACCTATTACGTTAAACTAGCCACCGGTTTG
* * *
7471829 TTTAACGGTATAATAATAATGTAAATGGTATAATA
64 TTTAAAGGTATAATAATAATGTAAACGGTAAAATA
* *
7471864 -ATAA-TGTAAACGG-TAAAATAAAATAGGCGCCACCTATTACGTTAAACTAGCCACCGGTTTGT
1 TACAACT-TAAACGGTTAAAATAAAATAGGCGCAACCTATTACGTTAAACTAGCCACCGGTTTGT
** *
7471926 TTAAATATATAATAATAATGTAAACAGTAAAATA
65 TTAAAGGTATAATAATAATGTAAACGGTAAAATA
7471960 AAATAGGCAC
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
96 71 0.44
97 8 0.05
100 84 0.52
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (98 bp):
TACAACTTAAACGGTTAAAATAAAATAGGCGCAACCTATTACGTTAAACTAGCCACCGGTTTGTT
TAAAGGTATAATAATAATGTAAACGGTAAAATA
Found at i:7471939 original size:76 final size:76
Alignment explanation
Indices: 7471857--7472035 Score: 250
Period size: 76 Copynumber: 2.4 Consensus size: 76
7471847 ATGTAAATGG
* * *
7471857 TATAATAATAATGTAAACGGTAAAATAAAATAGGCGCCACCTATTACGTTAAACTAGCCACCGGT
1 TATAATAATAATGTAAACGGTAAAATAAAATAGGCACCACATATTACATTAAACTAGCCACCGGT
* *
7471922 TTGTTTAAATA
66 TTATTTAAAGA
* * *
7471933 TATAATAATAATGTAAACAGTAAAATAAAATAGGCACTACATATTACATTAAACTAGCTACCGGT
1 TATAATAATAATGTAAACGGTAAAATAAAATAGGCACCACATATTACATTAAACTAGCCACCGGT
*
7471998 TTATTTAAAGG
66 TTATTTAAAGA
* * *
7472009 TATAATGATAATGTAAAAGATAAAATA
1 TATAATAATAATGTAAACGGTAAAATA
7472036 TTTACAACTT
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 90 1.00
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.30
Consensus pattern (76 bp):
TATAATAATAATGTAAACGGTAAAATAAAATAGGCACCACATATTACATTAAACTAGCCACCGGT
TTATTTAAAGA
Found at i:7472120 original size:176 final size:176
Alignment explanation
Indices: 7471877--7472200 Score: 488
Period size: 176 Copynumber: 1.8 Consensus size: 176
7471867 ATGTAAACGG
* * * *
7471877 TAAAATAAAATAGGCGCCACCTATTACGTTAAACTAGCCACCGGTTTGTTTAAATATATAATAAT
1 TAAAATAAAATAGGCACAACCTATTACGTTAAACTAGCCACCGGTTTATTTAAAGATATAATAAT
*
7471942 AATGTAAACAGTAAAATAAAATAGGCACT-ACATATTACATTAAACTAGCTACCGGTTTATTTAA
66 AATGTAAACAGTAAAATAAAATAGGCACTGAC-TATTACATTAAACTACCTACCGGTTTATTTAA
*
7472006 AGGTATAATGATAATGTAAAAGATAAAATATTTACAACTTAATGGAT
130 AGGTATAATAATAATGTAAAAGATAAAATATTTACAACTTAATGGAT
* * * *
7472053 TAAAATAAAATAGGCACAACTTATTACGTTAAACTAGCTACTGGTTTATTTAAAGGTATAATAAT
1 TAAAATAAAATAGGCACAACCTATTACGTTAAACTAGCCACCGGTTTATTTAAAGATATAATAAT
** * * * *
7472118 AATGTAAATGGTAAAATAAAATAGGCGCTGTCTATTACGTTAAACTACCTACCGGTTTGTTTAAA
66 AATGTAAACAGTAAAATAAAATAGGCACTGACTATTACATTAAACTACCTACCGGTTTATTTAAA
7472183 GGTATAATAATAATGTAA
131 GGTATAATAATAATGTAA
7472201 CCTATTAAAA
Statistics
Matches: 131, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
176 130 0.99
177 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.32
Consensus pattern (176 bp):
TAAAATAAAATAGGCACAACCTATTACGTTAAACTAGCCACCGGTTTATTTAAAGATATAATAAT
AATGTAAACAGTAAAATAAAATAGGCACTGACTATTACATTAAACTACCTACCGGTTTATTTAAA
GGTATAATAATAATGTAAAAGATAAAATATTTACAACTTAATGGAT
Found at i:7472133 original size:100 final size:100
Alignment explanation
Indices: 7471953--7472135 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 100
7471943 ATGTAAACAG
* *
7471953 TAAAATAAAATAGGCACTACATATTACATTAAACTAGCTACCGGTTTATTTAAAGGTATAATGAT
1 TAAAATAAAATAGGCACAACATATTACATTAAACTAGCTACCGGTTTATTTAAAGGTATAATAAT
7472018 AATGTAAAAGATAAAATATTTACAACTTAATGGAT
66 AATGTAAAAGATAAAATATTTACAACTTAATGGAT
* * *
7472053 TAAAATAAAATAGGCACAACTTATTACGTTAAACTAGCTACTGGTTTATTTAAAGGTATAATAAT
1 TAAAATAAAATAGGCACAACATATTACATTAAACTAGCTACCGGTTTATTTAAAGGTATAATAAT
* *
7472118 AATGTAAATGGTAAAATA
66 AATGTAAAAGATAAAATA
7472136 AAATAGGCGC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.32
Consensus pattern (100 bp):
TAAAATAAAATAGGCACAACATATTACATTAAACTAGCTACCGGTTTATTTAAAGGTATAATAAT
AATGTAAAAGATAAAATATTTACAACTTAATGGAT
Found at i:7472241 original size:77 final size:76
Alignment explanation
Indices: 7472051--7472288 Score: 323
Period size: 76 Copynumber: 3.1 Consensus size: 76
7472041 AACTTAATGG
* * * * *
7472051 ATTAAAATAAAATAGGCACAACTTATTACGTTAAACTAGCTACTGGTTTATTTAAAGGTATAATA
1 ATTAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACTGGTTTGTTTAAAGGTATAATA
7472116 ATAATGTAAAT
66 ATAATGTAAAT
** ** *
7472127 GGTAAAATAAAATAGGCGCTGTCTATTACGTTAAACTACCTACCGGTTTGTTTAAAGGTATAATA
1 ATTAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACTGGTTTGTTTAAAGGTATAATA
*
7472192 ATAATGTAACCT
66 ATAATGTAA-AT
* *
7472204 ATTAAAATTAAATAGGTGCTACCTATTACGTTAAACTACCTACTGGTTTGTTTAAAGGTATAATA
1 ATTAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACTGGTTTGTTTAAAGGTATAATA
* *
7472269 TTAATGTAAAC
66 ATAATGTAAAT
*
7472280 AGTAAAATA
1 ATTAAAATA
7472289 TTTACAACTT
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
76 71 0.51
77 67 0.49
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (76 bp):
ATTAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACTGGTTTGTTTAAAGGTATAATA
ATAATGTAAAT
Found at i:7472472 original size:78 final size:78
Alignment explanation
Indices: 7472327--7472620 Score: 375
Period size: 77 Copynumber: 3.8 Consensus size: 78
7472317 AGACGCTACA
* * *
7472327 TATTATGTTAAACTACCTACCA-GTTTGTTTAAAGTTATAATAATAATGTAAACAG-TAAAATTA
1 TATTACGTTAAACTACCTACCAGGTTTGTTTAAAGGTATAATAATAATGTAACCAGTTAAAA-TA
*
7472390 AAATAGGCACTATC
65 AAATAAGCACTATC
* * **
7472404 TATTACGTTAAACTACCTA-TAGATTTGTTTTAAAGGTATAATAATAATGTAACTGGTTAAAATA
1 TATTACGTTAAACTACCTACCAGGTTTG-TTTAAAGGTATAATAATAATGTAACCAGTTAAAATA
***
7472468 AAATAAGTGTTATC
65 AAATAAGCACTATC
* *
7472482 TATTACGTTAAACTACCTA-CTGGTTTGTTTAAAGGTATAATAATAATGTAACCAATTAAAATAA
1 TATTACGTTAAACTACCTACCAGGTTTGTTTAAAGGTATAATAATAATGTAACCAGTTAAAATAA
7472546 AATAAGCACTATC
66 AATAAGCACTATC
* * * *
7472559 TATTATGTTAAACTACCTACC-GGTTTGTTTAAAGGTATAATATTAATTTAAACAG-TAAAATA
1 TATTACGTTAAACTACCTACCAGGTTTGTTTAAAGGTATAATAATAATGTAACCAGTTAAAATA
7472621 TTTACAACTT
Statistics
Matches: 188, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
76 8 0.04
77 114 0.61
78 61 0.32
79 5 0.03
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (78 bp):
TATTACGTTAAACTACCTACCAGGTTTGTTTAAAGGTATAATAATAATGTAACCAGTTAAAATAA
AATAAGCACTATC
Found at i:7472542 original size:332 final size:330
Alignment explanation
Indices: 7472053--7472712 Score: 1011
Period size: 332 Copynumber: 2.0 Consensus size: 330
7472043 CTTAATGGAT
* *
7472053 TAAAATAAAATAGGCACAACTTATTACGTTAAACTAGCTACTGGTTTATTTAAAGGTATAATAAT
1 TAAAATAAAATAGGCACAACTTATTACGTTAAACTACCTACTGATTTATTTAAAGGTATAATAAT
* *
7472118 AATGTAAATGGTAAAATAAAATAGGCGCTGTCTATTACGTTAAACTACCTACCGGTTTGTTTAAA
66 AATGTAAATGGTAAAATAAAATAAGCGCTATCTATTACGTTAAACTACCTACCGGTTTGTTTAAA
* * * ** *
7472183 GGTATAATAATAATGTAACCTATTAAAATTAAATAGGTGCTACCTATTACGTTAAACTACCTACT
131 GGTATAATAATAATGTAACCAATTAAAATAAAATAAGCACTACCTATTACGTTAAACTACCTACC
*
7472248 GGTTTGTTTAAAGGTATAATATTAATGTAAACAGTAAAATATTTACAACTTAACCGGTTAAAACA
196 GGTTTGTTTAAAGGTATAATATTAATGTAAACAGTAAAATATTTACAACTTAACCGATTAAAACA
* * * *
7472313 AAATAGACGCTACATATTATGTTAAACTACCTACCAGTTTGTTTAAAGTTATAATAATAATG-TA
261 AAATAGACGCTACATATTATGTTAAACCACCTACCAGATTATTTAAAGGTATAATAATAATGTTA
7472377 AACAG
326 AACAG
* *
7472382 TAAAATTAAAATAGGCACTA-TCTATTACGTTAAACTACCTA-TAGATTTGTTTTAAAGGTATAA
1 TAAAA-TAAAATAGGCACAACT-TATTACGTTAAACTACCTACT-GATTT-ATTTAAAGGTATAA
* * * *
7472445 TAATAATGTAACTGGTTAAAATAAAATAAGTGTTATCTATTACGTTAAACTACCTACTGGTTTGT
62 TAATAATGTAAATGG-TAAAATAAAATAAGCGCTATCTATTACGTTAAACTACCTACCGGTTTGT
* *
7472510 TTAAAGGTATAATAATAATGTAACCAATTAAAATAAAATAAGCACTATCTATTATGTTAAACTAC
126 TTAAAGGTATAATAATAATGTAACCAATTAAAATAAAATAAGCACTACCTATTACGTTAAACTAC
*
7472575 CTACCGGTTTGTTTAAAGGTATAATATTAATTTAAACAGTAAAATATTTACAACTTAACCGATTA
191 CTACCGGTTTGTTTAAAGGTATAATATTAATGTAAACAGTAAAATATTTACAACTTAACCGATTA
* * *
7472640 AAATAAAATAGACGCTACTTATTATGTTAAACCACTTACCAGATTATTTAAAGGTATAATAATAA
256 AAACAAAATAGACGCTACATATTATGTTAAACCACCTACCAGATTATTTAAAGGTATAATAATAA
7472705 TGTTAAAC
321 TGTTAAAC
7472713 CATACTTGTA
Statistics
Matches: 298, Mismatches: 27, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
329 7 0.02
330 35 0.12
331 27 0.09
332 224 0.75
333 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (330 bp):
TAAAATAAAATAGGCACAACTTATTACGTTAAACTACCTACTGATTTATTTAAAGGTATAATAAT
AATGTAAATGGTAAAATAAAATAAGCGCTATCTATTACGTTAAACTACCTACCGGTTTGTTTAAA
GGTATAATAATAATGTAACCAATTAAAATAAAATAAGCACTACCTATTACGTTAAACTACCTACC
GGTTTGTTTAAAGGTATAATATTAATGTAAACAGTAAAATATTTACAACTTAACCGATTAAAACA
AAATAGACGCTACATATTATGTTAAACCACCTACCAGATTATTTAAAGGTATAATAATAATGTTA
AACAG
Found at i:7472586 original size:155 final size:154
Alignment explanation
Indices: 7472327--7472605 Score: 425
Period size: 155 Copynumber: 1.8 Consensus size: 154
7472317 AGACGCTACA
* *
7472327 TATTATGTTAAACTACCTACCAGTTTGTTTAAAGTTATAATAATAATGTAAACAGTAAAATTAAA
1 TATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTATAATAATAATGTAAACAGTAAAATTAAA
* *
7472392 ATAGGCACTATCTATTACGTTAAACTACCTATAGATTTGTTTTAAAGGTATAATAATAATGTAAC
66 ATAAGCACTATCTATTACGTTAAACTACCTACAGATTTG-TTTAAAGGTATAATAATAATGTAAC
7472457 TGGTTAAAATAAAATAAGTGTTATC
130 TGGTTAAAATAAAATAAGTGTTATC
** * *
7472482 TATTACGTTAAACTACCTACTGGTTTGTTTAAAGGTATAATAATAATGTAACCAATTAAAA-TAA
1 TATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTATAATAATAATGTAAAC-AGTAAAATTAA
* * * *
7472546 AATAAGCACTATCTATTATGTTAAACTACCTACCGGTTTGTTTAAAGGTATAATATTAAT
65 AATAAGCACTATCTATTACGTTAAACTACCTACAGATTTGTTTAAAGGTATAATAATAAT
7472606 TTAAACAGTA
Statistics
Matches: 111, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
154 19 0.17
155 86 0.77
156 6 0.05
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (154 bp):
TATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTATAATAATAATGTAAACAGTAAAATTAAA
ATAAGCACTATCTATTACGTTAAACTACCTACAGATTTGTTTAAAGGTATAATAATAATGTAACT
GGTTAAAATAAAATAAGTGTTATC
Found at i:7472645 original size:100 final size:101
Alignment explanation
Indices: 7472530--7472712 Score: 255
Period size: 100 Copynumber: 1.8 Consensus size: 101
7472520 AATAATAATG
* * * *
7472530 TAACCAATTAAAATAAAATA-AGCACTA-TCTATTATGTTAAACTACCTACCGGTTTGTTTAAAG
1 TAACCAATTAAAATAAAATAGA-CACTACT-TATTATGTTAAACCACCTACCAGATTATTTAAAG
*
7472593 GTATAATATTAAT-TTAAACAGTAAAATATTTACAACT
64 GTATAATAATAATGTTAAACAGTAAAATATTTACAACT
* * *
7472630 TAACCGATTAAAATAAAATAGACGCTACTTATTATGTTAAACCACTTACCAGATTATTTAAAGGT
1 TAACCAATTAAAATAAAATAGACACTACTTATTATGTTAAACCACCTACCAGATTATTTAAAGGT
7472695 ATAATAATAATGTTAAAC
66 ATAATAATAATGTTAAAC
7472713 CATACTTGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
100 64 0.89
101 8 0.11
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.34
Consensus pattern (101 bp):
TAACCAATTAAAATAAAATAGACACTACTTATTATGTTAAACCACCTACCAGATTATTTAAAGGT
ATAATAATAATGTTAAACAGTAAAATATTTACAACT
Found at i:7473697 original size:108 final size:107
Alignment explanation
Indices: 7473459--7473854 Score: 508
Period size: 108 Copynumber: 3.7 Consensus size: 107
7473449 TTATTCATAA
* * * * * *
7473459 TAACATTATTGGGCGCAACCTAGTATGTTAATATTTATTTATAA-AAAATCAGTATTTAACCTAT
1 TAACATT-TTAGGCGCAACCTAATATGTTAATA-ATATTAATAACAAAATAAGTAATTAACCTAT
** * *
7473523 TTTGTTGCCGTGGGATTTCGAATG-CCCATAAGCTTAAACTTTGG
64 TTTGTTATCGT-GGATTTCTAAGGCCCCATAAGCTTAAACTTTGG
* * * *
7473567 TAACATATTAGGAGCAACCTAATATGTTAATAATATTTATAACAAAATAAGTAATTAACATATTT
1 TAACATTTTAGGCGCAACCTAATATGTTAATAATATTAATAACAAAATAAGTAATTAACCTATTT
* *
7473632 TGTTATCGTGAGATTTCTAAGGCCCCATTACCTTAAACTTTGG
66 TGTTATCGTG-GATTTCTAAGGCCCCATAAGCTTAAACTTTGG
* *
7473675 TAACATTTTAGGCGCTACCTAATATGTTGATAATATTAATAACAAAATAAGTAATTAACCTATTT
1 TAACATTTTAGGCGCAACCTAATATGTTAATAATATTAATAACAAAATAAGTAATTAACCTATTT
* *
7473740 TGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTAAAATTTGG
66 TGTTATCGT-GGATTTCTAAGGCCCCATAAGCTTAAACTTTGG
* *** *
7473783 TATCATTTTAGGCATTACCTAATATGTTGATAATATTAATAACAAAATAAGTAATTAACCTATTT
1 TAACATTTTAGGCGCAACCTAATATGTTAATAATATTAATAACAAAATAAGTAATTAACCTATTT
7473848 TGTTATC
66 TGTTATC
7473855 AGTTTTAAAC
Statistics
Matches: 258, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
106 10 0.04
107 57 0.22
108 190 0.74
109 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (107 bp):
TAACATTTTAGGCGCAACCTAATATGTTAATAATATTAATAACAAAATAAGTAATTAACCTATTT
TGTTATCGTGGATTTCTAAGGCCCCATAAGCTTAAACTTTGG
Found at i:7476236 original size:81 final size:81
Alignment explanation
Indices: 7476101--7476593 Score: 637
Period size: 81 Copynumber: 6.1 Consensus size: 81
7476091 CTGTTATAAA
* * * * *
7476101 TAAAAAATTAATGGCCTAGTTGTGTATTTGACATAAAAGTTTCAAGTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAATGTGTCAAGTATGCCAGTTAGATGAAAG
7476166 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * * *
7476182 TAAAAGATTAAAGTCCTAGATGTGCATTTGATAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAATGTGTCAAGTATGCCAGTTAGATGAAAG
7476247 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* *
7476263 TAAAAGATTAATGGCCTAGCTATGCATTTGACATAAATGTGTCAAGTATGCCAATTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAATGTGTCAAGTATGCCAGTTAGATGAAAG
7476328 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * *
7476344 TAAAATATTATTGGCCTAGCTGTGCATTTGACATAAATGTGTCAATTATACCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAATGTGTCAAGTATGCCAGTTAGATGAAAG
7476409 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * *
7476425 TAAAAGATTAATAGCCTAGGTGTGCATTTGATAGAAATGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAATGTGTCAAGTATGCCAGTTAGATGAAAG
7476490 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * * * * ** * *
7476506 TAAAAGATCATTTGCCTAGTTGTGGAATTGGC-TGAAATGTGTCAACCATGCAAGTTAGATAAAA
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAT-AAATGTGTCAAGTATGCCAGTTAGATGAAA
** * *
7476570 GACTAAATGCCTTTGGG
65 GGTTAAATACCTTTGAG
7476587 TAAAAGA
1 TAAAAGA
7476594 CTAAGTGCTT
Statistics
Matches: 364, Mismatches: 47, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
81 364 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAATGTGTCAAGTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:7483087 original size:81 final size:81
Alignment explanation
Indices: 7482937--7483467 Score: 697
Period size: 81 Copynumber: 6.5 Consensus size: 81
7482927 TGTTCTAAAC
* * * * * *
7482937 AAAATATTAATGGCCTAGTTGTGCATTTGACATAAAGGTGTCAAGTATGTCAGTTATATGAAAGA
1 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAGG
7483002 TTAAATACCTTTGAGT
66 TTAAATACCTTTGAGT
* *
7483018 AAAAGATTAATGGCCTAGTTGTGCATTTGATAGAAAGGTGTCAAGTATGCCAGTTAGAT-AATAG
1 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAA-AG
7483082 GTTAAATACCTTTGAGT
65 GTTAAATACCTTTGAGT
* * * * *
7483099 AAAAAATTAATGGCCTAGGTATGCATTTGACAGAATGGTGTCAAGTGTGCCAGTTAGATGAAATG
1 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAGG
7483164 TTAAATACCTTTGAGT
66 TTAAATACCTTTGAGT
* * * *
7483180 AAAAGATTAATGGCCTAGCTATGCATTTGACAGAAAGGTGTCAAGTGTGCTAGTTAGATGAAATG
1 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAGG
7483245 TTAAATACCTTTGAGT
66 TTAAATACCTTTGAGT
* ** **
7483261 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAATGTGTCACTTATGCCAGTTAGATGAAATA
1 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAGG
*
7483326 TTAAATATCTTTGAGT
66 TTAAATACCTTTGAGT
* * * * * *
7483342 AAAAGATTAATAGCCTAGTTGTGCATTTGACAGAAAGGTATCAATTATTCTAGTTAGATGAAAGG
1 AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAGG
* *
7483407 ATTAAGTACCTTTGGGT
66 -TTAAATACCTTTGAGT
* * * * *
7483424 AAAAGATTATTTGCCTAGCTATGCAATTGGA-AAAAAGGTGTCAA
1 AAAAGATTAATGGCCTAGTTATGC-ATTTGACAGAAAGGTGTCAA
7483468 TCATGGTCAA
Statistics
Matches: 402, Mismatches: 44, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
80 2 0.00
81 349 0.87
82 46 0.11
83 5 0.01
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.32
Consensus pattern (81 bp):
AAAAGATTAATGGCCTAGTTATGCATTTGACAGAAAGGTGTCAAGTATGCCAGTTAGATGAAAGG
TTAAATACCTTTGAGT
Found at i:7485570 original size:19 final size:17
Alignment explanation
Indices: 7485541--7485602 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 17
7485531 CAATTTATTT
*
7485541 CTTTTCATTTCCTTTTC
1 CTTTCCATTTCCTTTTC
7485558 CTTTAACCATTT-CTTTAT-
1 CTTT--CCATTTCCTTT-TC
7485576 CTTTCCATTTCTTCTTTTC
1 CTTTCCATTTC--CTTTTC
7485595 CTTTCCAT
1 CTTTCCAT
7485603 ACTAATCTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
16 6 0.16
17 4 0.11
18 9 0.24
19 18 0.49
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.60
Consensus pattern (17 bp):
CTTTCCATTTCCTTTTC
Found at i:7487181 original size:65 final size:65
Alignment explanation
Indices: 7487077--7487206 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
7487067 ATGCCATGTG
7487077 AATGAAAAGGTATGTTTCATGATCATAGATGGTAAAAGTTGTACCAATATAGCAAGAACGATCAA
1 AATGAAAAGGTATGTTTCATGATCATAGATGGTAAAAGTTGTACCAATATAGCAAGAACGATCAA
7487142 AATGAAAAGGTATGTTTCATGATCATAGATGGTAAAAGTTGTACCAATATAGCAAGAACGATCAA
1 AATGAAAAGGTATGTTTCATGATCATAGATGGTAAAAGTTGTACCAATATAGCAAGAACGATCAA
7487207 TGTGTAAAAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (65 bp):
AATGAAAAGGTATGTTTCATGATCATAGATGGTAAAAGTTGTACCAATATAGCAAGAACGATCAA
Found at i:7493598 original size:32 final size:32
Alignment explanation
Indices: 7493561--7493668 Score: 135
Period size: 32 Copynumber: 3.4 Consensus size: 32
7493551 TAAGGTAACA
* *
7493561 CTTGGGTAGGCTCTGAGGCCCCAAGGTATTTC
1 CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
* *
7493593 CTTGGGTAGGCTCTAAAGACCCAAGGTATTCC
1 CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
* * ** *
7493625 CTTGGGTATGCTCTTAGGCCCCAAGGTACACT
1 CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
7493657 CTTGGGTAGGCT
1 CTTGGGTAGGCT
7493669 ATCAAGACCC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 64 1.00
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.28
Consensus pattern (32 bp):
CTTGGGTAGGCTCTAAGGCCCCAAGGTATTCC
Found at i:7493662 original size:64 final size:64
Alignment explanation
Indices: 7493561--7493681 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 64
7493551 TAAGGTAACA
** *
7493561 CTTGGGTAGGCTCTGAGGCCCCAAGGTATTTCCTTGGGTAGGCTCTAAAGACCCAAGGTATTCC
1 CTTGGGTAGGCTCTGAGGCCCCAAGGTAACTCCTTGGGTAGGCTATAAAGACCCAAGGTATTCC
* * *
7493625 CTTGGGTATGCTCTTAGGCCCCAAGGTACACT-CTTGGGTAGGCTATCAAGACCCAAG
1 CTTGGGTAGGCTCTGAGGCCCCAAGGTA-ACTCCTTGGGTAGGCTATAAAGACCCAAG
7493682 ATAATCCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
64 49 0.98
65 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (64 bp):
CTTGGGTAGGCTCTGAGGCCCCAAGGTAACTCCTTGGGTAGGCTATAAAGACCCAAGGTATTCC
Found at i:7493680 original size:32 final size:32
Alignment explanation
Indices: 7493547--7493681 Score: 110
Period size: 32 Copynumber: 4.2 Consensus size: 32
7493537 AATCCTTACG
* * * *
7493547 GACCTAAGGTA-ACACTTGGGTAGGCTCTGAG
1 GACCCAAGGTACACCCTTGGGTAGGCTCTAAA
* ***
7493578 GCCCCAAGGTATTTCCTTGGGTAGGCTCTAAA
1 GACCCAAGGTACACCCTTGGGTAGGCTCTAAA
** * * *
7493610 GACCCAAGGTATTCCCTTGGGTATGCTCTTAG
1 GACCCAAGGTACACCCTTGGGTAGGCTCTAAA
* * * *
7493642 GCCCCAAGGTACACTCTTGGGTAGGCTATCAA
1 GACCCAAGGTACACCCTTGGGTAGGCTCTAAA
7493674 GACCCAAG
1 GACCCAAG
7493682 ATAATCCTTT
Statistics
Matches: 82, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
31 9 0.11
32 73 0.89
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (32 bp):
GACCCAAGGTACACCCTTGGGTAGGCTCTAAA
Found at i:7497114 original size:192 final size:192
Alignment explanation
Indices: 7496787--7497138 Score: 695
Period size: 192 Copynumber: 1.8 Consensus size: 192
7496777 GTTCGTAACG
7496787 TCTGAGAATGCACTAGACCCAGAATTTCTAATTTATGAGCATTCACCCAAACACAAACTTATCGA
1 TCTGAGAATGCACTAGACCCAGAATTTCTAATTTATGAGCATTCACCCAAACACAAACTTATCGA
7496852 AAGTACTCTTGGTTTCAGAATTGTTTGAAATGACTTAAATAAATGACAAGTTTGAATTAAATGGA
66 AAGTACTCTTGGTTTCAGAATTGTTTGAAATGACTTAAATAAATGACAAGTTTGAATTAAATGGA
7496917 AAGACTTGACAGAATGAAAGGAATAAAAAAACGTAAATGACCAAATACCCCTTAAGTGTGAA
131 AAGACTTGACAGAATGAAAGGAATAAAAAAACGTAAATGACCAAATACCCCTTAAGTGTGAA
7496979 TCTGAGAATGCACTAGACCCAGAATTTCTAATTTATGAGCATTCACCCAAACACAAACTTATCGA
1 TCTGAGAATGCACTAGACCCAGAATTTCTAATTTATGAGCATTCACCCAAACACAAACTTATCGA
7497044 AAGTACTCTTGGTTTCAGAATTGTTTGAAATGACTTAAATAAATGACAAGTTTGAATTAAATGGA
66 AAGTACTCTTGGTTTCAGAATTGTTTGAAATGACTTAAATAAATGACAAGTTTGAATTAAATGGA
*
7497109 AAGACTTGACAGAATGAAAGGATTAAAAAA
131 AAGACTTGACAGAATGAAAGGAATAAAAAA
7497139 CCCTTGAACT
Statistics
Matches: 159, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 159 1.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (192 bp):
TCTGAGAATGCACTAGACCCAGAATTTCTAATTTATGAGCATTCACCCAAACACAAACTTATCGA
AAGTACTCTTGGTTTCAGAATTGTTTGAAATGACTTAAATAAATGACAAGTTTGAATTAAATGGA
AAGACTTGACAGAATGAAAGGAATAAAAAAACGTAAATGACCAAATACCCCTTAAGTGTGAA
Found at i:7501751 original size:27 final size:29
Alignment explanation
Indices: 7501703--7501765 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
7501693 GAAAGGATTG
* *
7501703 AAATA-CCCTTGAATTGTAAAAT-GACCA
1 AAATACCCCTTGAAGTGTAAAATAAACCA
* *
7501730 AAATACCCCTT-AAGTGTGAAATAAACTA
1 AAATACCCCTTGAAGTGTAAAATAAACCA
7501758 AAATACCC
1 AAATACCC
7501766 TCAAGCCCTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 14 0.47
28 16 0.53
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.24
Consensus pattern (29 bp):
AAATACCCCTTGAAGTGTAAAATAAACCA
Found at i:7501766 original size:27 final size:27
Alignment explanation
Indices: 7501703--7501766 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
7501693 GAAAGGATTG
* *
7501703 AAATACCCTTGAATTGTAAAATGACCA
1 AAATACCCTTGAAGTGTAAAATAACCA
* *
7501730 AAATACCCCTT-AAGTGTGAAATAAACTA
1 AAATA-CCCTTGAAGTGTAAAAT-AACCA
7501758 AAATACCCT
1 AAATACCCT
7501767 CAAGCCCTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGAAGTGTAAAATAACCA
Found at i:7501796 original size:25 final size:25
Alignment explanation
Indices: 7501759--7501806 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7501749 AATAAACTAA
*
7501759 AATACCCTCAAGCCCTGGAATGATG
1 AATACCCTCAAGCCCTAGAATGATG
*
7501784 AATACCC-CTAAGCTCTAGAATGA
1 AATACCCTC-AAGCCCTAGAATGA
7501807 ATAAAGCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (25 bp):
AATACCCTCAAGCCCTAGAATGATG
Found at i:7508757 original size:32 final size:31
Alignment explanation
Indices: 7508708--7508826 Score: 105
Period size: 32 Copynumber: 3.7 Consensus size: 31
7508698 ACGTGACACT
* *
7508708 TGGGTAGGATTTGAGGCCCCAAGTTATTTCCC
1 TGGGTAGGCTTT-AGGCCCCAAGTTATTACCC
* *
7508740 TGGGTAGGCTTTAAGGCCCCAATTTATTACCT
1 TGGGTAGGCTTT-AGGCCCCAAGTTATTACCC
* * * *
7508772 TGGGTAGACTCTTAGGCCCCAAGGTA-CACTCT
1 TGGGTAGGCT-TTAGGCCCCAAGTTATTAC-CC
*
7508804 TAGGTAGGCTCTTAGGCCCCAAG
1 TGGGTAGGCT-TTAGGCCCCAAG
7508827 ATAATCCCTT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
31 2 0.03
32 70 0.95
33 2 0.03
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (31 bp):
TGGGTAGGCTTTAGGCCCCAAGTTATTACCC
Found at i:7508838 original size:32 final size:32
Alignment explanation
Indices: 7508742--7508846 Score: 97
Period size: 32 Copynumber: 3.3 Consensus size: 32
7508732 TATTTCCCTG
** * * *
7508742 GGTAGGCT-TTAAGGCCCCAATTTATTACCTTG
1 GGTAGGCTCTT-AGGCCCCAAGATAATCCCTTA
* * *
7508774 GGTAGACTCTTAGGCCCCAAGGTACA-CTCTTA
1 GGTAGGCTCTTAGGCCCCAAGATA-ATCCCTTA
7508806 GGTAGGCTCTTAGGCCCCAAGATAATCCCTTA
1 GGTAGGCTCTTAGGCCCCAAGATAATCCCTTA
*
7508838 GGTTGGCTC
1 GGTAGGCTC
7508847 CTACACCCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
31 1 0.02
32 56 0.95
33 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.29
Consensus pattern (32 bp):
GGTAGGCTCTTAGGCCCCAAGATAATCCCTTA
Found at i:7512069 original size:27 final size:28
Alignment explanation
Indices: 7512021--7512084 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
7512011 GAAAGGATTG
* *
7512021 AAATACCCTTGAATTATAAAATGACC-A
1 AAATACCCTTGAAGTATAAAATAACCTA
* * *
7512048 AAATACCCTTTAAGTGTGAAATAACCTA
1 AAATACCCTTGAAGTATAAAATAACCTA
7512076 AAATACCCT
1 AAATACCCT
7512085 CAAGCCCTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (28 bp):
AAATACCCTTGAAGTATAAAATAACCTA
Found at i:7513214 original size:32 final size:32
Alignment explanation
Indices: 7513167--7513239 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
7513157 TAACGTGACA
7513167 CTTGGGTAGGATTTAAGGCCCCAAGTTATTTCC
1 CTTGGGTAGGATTTAAGGCCCCAAGTTA-TTCC
* * *
7513200 C-TGGGTAGGCTTTAAGGCCGCAATTTATTCC
1 CTTGGGTAGGATTTAAGGCCCCAAGTTATTCC
7513231 CTTGGGTAG
1 CTTGGGTAG
7513240 ACTCTTAGGC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 5 0.14
32 30 0.83
33 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (32 bp):
CTTGGGTAGGATTTAAGGCCCCAAGTTATTCC
Found at i:7513250 original size:32 final size:32
Alignment explanation
Indices: 7513169--7513251 Score: 91
Period size: 32 Copynumber: 2.6 Consensus size: 32
7513159 ACGTGACACT
7513169 TGGGTAGGA-TTTAAGGCCCCAAGTTATTTCCC
1 TGGGTA-GACTTTAAGGCCCCAAGTTATTTCCC
* * *
7513201 TGGGTAGGCTTTAAGGCCGCAATTTA-TTCCC
1 TGGGTAGACTTTAAGGCCCCAAGTTATTTCCC
7513232 TTGGGTAGACTCTT-AGGCCC
1 -TGGGTAGACT-TTAAGGCCC
7513252 GAAGGTACAC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
31 6 0.14
32 35 0.81
33 2 0.05
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (32 bp):
TGGGTAGACTTTAAGGCCCCAAGTTATTTCCC
Found at i:7515215 original size:32 final size:32
Alignment explanation
Indices: 7515075--7515215 Score: 110
Period size: 32 Copynumber: 4.4 Consensus size: 32
7515065 TAACGTGACA
* *
7515075 CTTGGGTAGGAT-TTGAGGCCCCAA-ATTATTTCC
1 CTTGGGTAGGCTCTT-AGGCCCCAAGA-TA-ATCC
* ** *
7515108 C-TGGGTAGGCTCTAAGGCCCCAATTTATTCC
1 CTTGGGTAGGCTCTTAGGCCCCAAGATAATCC
* * * *
7515139 CTTGGGTAGACTCTTAGGCCCGAAGGTACA-CA
1 CTTGGGTAGGCTCTTAGGCCCCAAGATA-ATCC
7515171 CTTGGGTAGGCTCTTAGGCCCCAAGATAATCC
1 CTTGGGTAGGCTCTTAGGCCCCAAGATAATCC
* *
7515203 CTTAGGTTGGCTC
1 CTTGGGTAGGCTC
7515216 CTACACCCAA
Statistics
Matches: 87, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
31 6 0.07
32 79 0.91
33 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.28
Consensus pattern (32 bp):
CTTGGGTAGGCTCTTAGGCCCCAAGATAATCC
Found at i:7517301 original size:32 final size:32
Alignment explanation
Indices: 7517265--7517337 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
7517255 GTAGGATTTG
*
7517265 AGGCCCCAAATTATTTCCC-TGGGTAGGCTCTA
1 AGGCCCCAAATTA-TTCCCTTGGGTAGACTCTA
* *
7517297 AGGCCCCAATTTATTCCCTTGGGTAGACTCTT
1 AGGCCCCAAATTATTCCCTTGGGTAGACTCTA
7517329 AGGCCCCAA
1 AGGCCCCAA
7517338 GGTACACTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 5 0.14
32 32 0.86
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (32 bp):
AGGCCCCAAATTATTCCCTTGGGTAGACTCTA
Found at i:7517360 original size:32 final size:32
Alignment explanation
Indices: 7517287--7517370 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 32
7517277 ATTTCCCTGG
* ** ** *
7517287 GTAGGCTCTAAGGCCCCAATTTATTCCCTTGG
1 GTAGGCTCTTAGGCCCCAAGGTACACCCTTGA
* *
7517319 GTAGACTCTTAGGCCCCAAGGTACACTCTTGA
1 GTAGGCTCTTAGGCCCCAAGGTACACCCTTGA
*
7517351 GTAGGCTCTTAGTCCCCAAG
1 GTAGGCTCTTAGGCCCCAAG
7517371 ATAATCCATT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (32 bp):
GTAGGCTCTTAGGCCCCAAGGTACACCCTTGA
Found at i:7519985 original size:24 final size:24
Alignment explanation
Indices: 7519958--7520031 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
7519948 CCATTTATGA
7519958 ACCATAAGCTCGTAAGCTTATTTT
1 ACCATAAGCTCGTAAGCTTATTTT
** * *
7519982 ACCA-AAAATAC-TTA-C-CATTTGT
1 ACCATAAGCT-CGTAAGCTTATTT-T
*
7520004 ACCATAAGCTTGTAAGCTTATTTT
1 ACCATAAGCTCGTAAGCTTATTTT
7520028 ACCA
1 ACCA
7520032 ATACACTTGC
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
21 4 0.11
22 6 0.17
23 10 0.29
24 11 0.31
25 4 0.11
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (24 bp):
ACCATAAGCTCGTAAGCTTATTTT
Found at i:7520019 original size:46 final size:48
Alignment explanation
Indices: 7519943--7520032 Score: 148
Period size: 46 Copynumber: 1.9 Consensus size: 48
7519933 ATATTCAATA
7519943 ACTTACCATTTATGAACCATAAGCTCGTAAGCTTATTTTACCAAAAAT
1 ACTTACCATTTATGAACCATAAGCTCGTAAGCTTATTTTACCAAAAAT
* *
7519991 ACTTACCA-TT-TGTACCATAAGCTTGTAAGCTTATTTTACCAA
1 ACTTACCATTTATGAACCATAAGCTCGTAAGCTTATTTTACCAA
7520033 TACACTTGCT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
46 30 0.75
47 2 0.05
48 8 0.20
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (48 bp):
ACTTACCATTTATGAACCATAAGCTCGTAAGCTTATTTTACCAAAAAT
Found at i:7520446 original size:21 final size:22
Alignment explanation
Indices: 7520407--7520447 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7520397 CGAAAATAAC
7520407 ATTCATGATAAAAATCATATAT
1 ATTCATGATAAAAATCATATAT
*
7520429 ATTCATGAT-AACATCATAT
1 ATTCATGATAAAAATCATAT
7520448 GCAACAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (22 bp):
ATTCATGATAAAAATCATATAT
Found at i:7522481 original size:17 final size:19
Alignment explanation
Indices: 7522453--7522501 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7522443 TTTATAAGAA
7522453 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
7522471 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
7522490 CACCGATGCACT
1 CATCGATGCACT
7522502 AAGGTTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:7523417 original size:94 final size:94
Alignment explanation
Indices: 7523256--7523445 Score: 380
Period size: 94 Copynumber: 2.0 Consensus size: 94
7523246 CCCGTCAACA
7523256 AGCCTCCTTTCTTCAATGGGGCTAACTATGCCTATTGGAAGAATAGAATGATGTACTTCATTCAA
1 AGCCTCCTTTCTTCAATGGGGCTAACTATGCCTATTGGAAGAATAGAATGATGTACTTCATTCAA
7523321 GCAAGTGACATGGGAGCATGGAATGCAAT
66 GCAAGTGACATGGGAGCATGGAATGCAAT
7523350 AGCCTCCTTTCTTCAATGGGGCTAACTATGCCTATTGGAAGAATAGAATGATGTACTTCATTCAA
1 AGCCTCCTTTCTTCAATGGGGCTAACTATGCCTATTGGAAGAATAGAATGATGTACTTCATTCAA
7523415 GCAAGTGACATGGGAGCATGGAATGCAAT
66 GCAAGTGACATGGGAGCATGGAATGCAAT
7523444 AG
1 AG
7523446 AAGAAGGATA
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (94 bp):
AGCCTCCTTTCTTCAATGGGGCTAACTATGCCTATTGGAAGAATAGAATGATGTACTTCATTCAA
GCAAGTGACATGGGAGCATGGAATGCAAT
Found at i:7526351 original size:45 final size:46
Alignment explanation
Indices: 7526298--7526388 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 46
7526288 AAAAAATGAG
7526298 GAAACTCATGATCCTCTTGAGAATCCAACCATTGAA-AAAGGAAGT
1 GAAACTCATGATCCTCTTGAGAATCCAACCATTGAAGAAAGGAAGT
7526343 GAAACTCATGATCCTCTTGAGAATCCAACCATTGAAGAAAGGAAGT
1 GAAACTCATGATCCTCTTGAGAATCCAACCATTGAAGAAAGGAAGT
7526389 ATCTTATCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 36 0.80
46 9 0.20
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.22
Consensus pattern (46 bp):
GAAACTCATGATCCTCTTGAGAATCCAACCATTGAAGAAAGGAAGT
Found at i:7529868 original size:21 final size:21
Alignment explanation
Indices: 7529839--7529897 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
7529829 ACTCCGGGAG
* *
7529839 CTAGTTCCTCTCGAGCTGCTC
1 CTAGCTCCTCTCGAGCTCCTC
*
7529860 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCTCGAGCTCCTC
*
7529881 CT-CCTCCT-TCG-GCTCCT
1 CTAGCTCCTCTCGAGCTCCT
7529898 GCTGATGACG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 6 0.18
19 3 0.09
20 5 0.15
21 20 0.59
ACGTcount: A:0.05, C:0.46, G:0.15, T:0.34
Consensus pattern (21 bp):
CTAGCTCCTCTCGAGCTCCTC
Found at i:7531047 original size:17 final size:19
Alignment explanation
Indices: 7531019--7531068 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
7531009 TTTATAAGAA
7531019 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
7531037 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
7531056 CACCGATGCACTC
1 CATCGATGCACTC
7531069 AGGCTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 7 0.25
18 7 0.25
19 14 0.50
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:7531094 original size:64 final size:65
Alignment explanation
Indices: 7530957--7531130 Score: 223
Period size: 64 Copynumber: 2.7 Consensus size: 65
7530947 TAAATTGAAT
* * * *
7530957 ATCGAATGCA-TTCTATGCATCGATGCACAC-CA-TGCACCGATGCACAGAGGATTTTATAAGAA
1 ATCGAATGCACTT-GATGCATCGATGCACTCTTAGTGCACCGATGCACACAGGATTTTATAAGAA
7531019 C
65 C
* * *
7531020 ATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCACTCAGGCTATTT-TGA-AA
1 ATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCACACAGGAT-TTTATAAGAA
7531083 C
65 C
*
7531084 ATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACTGATGCAC
1 ATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCAC
7531131 CAAGGTTCCA
Statistics
Matches: 99, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
63 25 0.25
64 52 0.53
65 19 0.19
66 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (65 bp):
ATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCACACAGGATTTTATAAGAAC
Found at i:7533349 original size:27 final size:27
Alignment explanation
Indices: 7533286--7533349 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 27
7533276 GAAAGGATTG
*
7533286 AAATACCCTTCAATTGTAAAATGACCA
1 AAATACCCTTCAATTGTAAAATAACCA
*
7533313 AAATACCCCTT-AAGTT-TGAAATAACCTA
1 AAATA-CCCTTCAA-TTGTAAAATAACC-A
7533341 AAATACCCT
1 AAATACCCT
7533350 CAAGCCCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 19 0.59
28 13 0.41
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATACCCTTCAATTGTAAAATAACCA
Found at i:7537868 original size:25 final size:25
Alignment explanation
Indices: 7537840--7537887 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
7537830 TGAAATAACA
7537840 AATACCCTCAAGCCCTGGAATGATG
1 AATACCCTCAAGCCCTGGAATGATG
* *
7537865 AATACCCTTAAGCTCTGGAATGA
1 AATACCCTCAAGCCCTGGAATGA
7537888 ATAAAGCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (25 bp):
AATACCCTCAAGCCCTGGAATGATG
Found at i:7538973 original size:32 final size:32
Alignment explanation
Indices: 7538935--7539055 Score: 102
Period size: 32 Copynumber: 3.8 Consensus size: 32
7538925 TAACATGACA
* * *
7538935 CTTGGGTAGGATTTGAGGCCCTAAGTTATTTCC
1 CTTGGGTAGGATCTAAGGCCCCAAGTTA-TTCC
* *
7538968 C-TGGGTAGGCTCTAAGGCCCCAATTTATTCC
1 CTTGGGTAGGATCTAAGGCCCCAAGTTATTCC
* * ** *
7538999 CTTGGGTA-GACTCTTAGGCCCCAAGGTACACT
1 CTTGGGTAGGA-TCTAAGGCCCCAAGTTATTCC
* *
7539031 CTTGGGTAGGCTCTTAGGCCCCAAG
1 CTTGGGTAGGATCTAAGGCCCCAAG
7539056 ATAATCACTT
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
31 6 0.08
32 64 0.89
33 2 0.03
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.29
Consensus pattern (32 bp):
CTTGGGTAGGATCTAAGGCCCCAAGTTATTCC
Found at i:7539075 original size:32 final size:32
Alignment explanation
Indices: 7538971--7539075 Score: 86
Period size: 32 Copynumber: 3.3 Consensus size: 32
7538961 TATTTCCCTG
* ** ** * *
7538971 GGTAGGCTCTAAGGCCCCAATTTATTCCCTTG
1 GGTAGGCTCTTAGGCCCCAAGATACACACTTA
* * * *
7539003 GGTAGACTCTTAGGCCCCAAGGTACACTCTTG
1 GGTAGGCTCTTAGGCCCCAAGATACACACTTA
7539035 GGTAGGCTCTTAGGCCCCAAGATA-ATCACTTA
1 GGTAGGCTCTTAGGCCCCAAGATACA-CACTTA
*
7539067 GGTTGGCTC
1 GGTAGGCTC
7539076 CTACGCCCAA
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
31 1 0.02
32 59 0.98
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.28
Consensus pattern (32 bp):
GGTAGGCTCTTAGGCCCCAAGATACACACTTA
Found at i:7543737 original size:28 final size:28
Alignment explanation
Indices: 7543709--7543794 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 28
7543699 TAAATAAATA
* *
7543709 AAAGT-ACATGGAAAACAACAAAGCAAT
1 AAAGTCACATAGAAAACAATAAAGCAAT
* *
7543736 AAAGTCTCATTGAAAA-AATAAAGCAAT
1 AAAGTCACATAGAAAACAATAAAGCAAT
* *
7543763 AAAGTCCCATAGAAAACAATAAAGCAGT
1 AAAGTCACATAGAAAACAATAAAGCAAT
7543791 AAAG
1 AAAG
7543795 AGGGATTCGA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 29 0.57
28 22 0.43
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.15
Consensus pattern (28 bp):
AAAGTCACATAGAAAACAATAAAGCAAT
Found at i:7543758 original size:27 final size:28
Alignment explanation
Indices: 7543719--7543794 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
7543709 AAAGTACATG
* * *
7543719 GAAAACAACAAAGCAATAAAGTCTCATT
1 GAAAACAATAAAGCAATAAAGTCCCATA
7543747 GAAAA-AATAAAGCAATAAAGTCCCATA
1 GAAAACAATAAAGCAATAAAGTCCCATA
*
7543774 GAAAACAATAAAGCAGTAAAG
1 GAAAACAATAAAGCAATAAAG
7543795 AGGGATTCGA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.58, C:0.14, G:0.13, T:0.14
Consensus pattern (28 bp):
GAAAACAATAAAGCAATAAAGTCCCATA
Found at i:7546271 original size:165 final size:166
Alignment explanation
Indices: 7545983--7546313 Score: 614
Period size: 165 Copynumber: 2.0 Consensus size: 166
7545973 ACCCTGGTCT
7545983 TAAGTCTCCATACTTTTCTACAGAGGTCATGTCCTCGTAAGGGCTAATTCCTTCAAATCAGATCT
1 TAAGTCTCCATACTTTTCTACAGAGGTCATGTCCTCGTAAGGGCTAATTCCTTCAAAT-AGATCT
7546048 CAAGCAGTCTACCCACTTCCTCCTTGGTCGTCCTCTCTTTCTGGCACCGTCGGTGTAATCGACTC
65 CAAGCAGTCTACCCACTTCCTCCTTGGTCGTCCTCTCTTTCTGGCACCGTCGGTGTAATCGACTC
7546113 TACCCTCCTGA-CGTATCTGACGTTTGTCGCCAAAGA
130 TACCCTCCTGACCGTATCTGACGTTTGTCGCCAAAGA
7546149 TAAGTCTCCATACTTTTCTATCAGAGGTCATGTCCTCGTAAGGGCTAATTCCTTCAAAT-GATCT
1 TAAGTCTCCATACTTTTCTA-CAGAGGTCATGTCCTCGTAAGGGCTAATTCCTTCAAATAGATCT
7546213 CAAGCAGTCTACCCACTTCCTCCTTGGTCGTCCTCT-TTTCTGGCACCGTCGAGTGTAATCGACT
65 CAAGCAGTCTACCCACTTCCTCCTTGGTCGTCCTCTCTTTCTGGCACCGTCG-GTGTAATCGACT
7546277 CTACCCTCCTGACCGTATCTGACGTTTGTCGCCAAAG
129 CTACCCTCCTGACCGTATCTGACGTTTGTCGCCAAAG
7546314 GATATGCCCA
Statistics
Matches: 162, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
164 15 0.09
165 65 0.40
166 44 0.27
167 38 0.23
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.32
Consensus pattern (166 bp):
TAAGTCTCCATACTTTTCTACAGAGGTCATGTCCTCGTAAGGGCTAATTCCTTCAAATAGATCTC
AAGCAGTCTACCCACTTCCTCCTTGGTCGTCCTCTCTTTCTGGCACCGTCGGTGTAATCGACTCT
ACCCTCCTGACCGTATCTGACGTTTGTCGCCAAAGA
Found at i:7548051 original size:17 final size:17
Alignment explanation
Indices: 7548029--7548062 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7548019 ATGTTCCTTG
7548029 ACCCTCCCTGTCGACAA
1 ACCCTCCCTGTCGACAA
7548046 ACCCTCCCTGTCGACAA
1 ACCCTCCCTGTCGACAA
7548063 CCCAAGAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.47, G:0.12, T:0.18
Consensus pattern (17 bp):
ACCCTCCCTGTCGACAA
Found at i:7548820 original size:28 final size:28
Alignment explanation
Indices: 7548781--7548852 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
7548771 CTCTTATGAA
* **
7548781 AAAAAATA-AAAATAATTTTCAAACTAG
1 AAAAATTATAAAATAATTTTCAAAAAAG
* * *
7548808 AAAAATTATAAAA-ATTTTTTAAAAAAT
1 AAAAATTATAAAATAATTTTCAAAAAAG
7548835 AAAAAGTTATAAAATAAT
1 AAAAA-TTATAAAATAAT
7548853 ACATTACAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
27 21 0.60
28 12 0.34
29 2 0.06
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (28 bp):
AAAAATTATAAAATAATTTTCAAAAAAG
Found at i:7549081 original size:17 final size:17
Alignment explanation
Indices: 7549059--7549093 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7549049 AAAAAATCAA
7549059 AGGAGAATTTGAGTTTT
1 AGGAGAATTTGAGTTTT
7549076 AGGAGAATTTGAGTTTT
1 AGGAGAATTTGAGTTTT
7549093 A
1 A
7549094 TTGTTACTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (17 bp):
AGGAGAATTTGAGTTTT
Found at i:7562915 original size:3 final size:3
Alignment explanation
Indices: 7562909--7563008 Score: 200
Period size: 3 Copynumber: 33.3 Consensus size: 3
7562899 AAAACCACGT
7562909 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
7562957 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
7563005 CTC C
1 CTC C
7563009 ATCAACCTGG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 97 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CTC
Found at i:7564487 original size:69 final size:69
Alignment explanation
Indices: 7564385--7564537 Score: 254
Period size: 69 Copynumber: 2.2 Consensus size: 69
7564375 AGAGTTGTCA
* * * *
7564385 TTGT-TGTTGGGAGTGTCGAGAAGGGAGAGGGGAATATGGGGGTTTTAGAATATAGTTAAAGAAG
1 TTGTGTGTTGGGAGTGTCGAGAAGGGAGAGGGGAAGATGGGGGTTTTAGAAGAGAGTTAAAAAAG
7564449 ATAC
66 ATAC
*
7564453 TTGTGTGTTGGGAGTGTCGAGAAGGGGGAGGGGAAGATGGGGGTTTTAGAAGAGAGTTAAAAAAG
1 TTGTGTGTTGGGAGTGTCGAGAAGGGAGAGGGGAAGATGGGGGTTTTAGAAGAGAGTTAAAAAAG
7564518 ATAC
66 ATAC
7564522 TTGTGTGTTGGGAGTG
1 TTGTGTGTTGGGAGTG
7564538 ATGGATGTGT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 4 0.05
69 75 0.95
ACGTcount: A:0.28, C:0.03, G:0.42, T:0.27
Consensus pattern (69 bp):
TTGTGTGTTGGGAGTGTCGAGAAGGGAGAGGGGAAGATGGGGGTTTTAGAAGAGAGTTAAAAAAG
ATAC
Found at i:7565196 original size:13 final size:14
Alignment explanation
Indices: 7565173--7565203 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7565163 TGAATTGTAA
7565173 TTTTTGAAAAATCG
1 TTTTTGAAAAATCG
7565187 TTTTTG-AAAATCG
1 TTTTTGAAAAATCG
7565200 TTTT
1 TTTT
7565204 ATGATGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (14 bp):
TTTTTGAAAAATCG
Found at i:7566859 original size:88 final size:91
Alignment explanation
Indices: 7566711--7566888 Score: 236
Period size: 88 Copynumber: 2.0 Consensus size: 91
7566701 GAGGAGCCTG
* * * * *
7566711 CAGTAAGGACTTACCCTGAGCACAAAGCCGAGGAGCATGTGGAAAGCGGTAAGGTTTTACCCTTG
1 CAGTAAGGACTTACCATGAGCACAAAGCAGAGGAGCATGTAGAAAGCGGTAAGGTCTTACCCTAG
* *
7566776 CACATAGCATAGGAGCCTGC-GAAAA
66 CACATAGCAGAAGAGCCTGCAGAAAA
** * *
7566801 CAGTAAGGTTTTACCAT-AGCACATAGCAGAGGAGCCTGTAGAAA-CGGTAAGGTCTTACCCTAG
1 CAGTAAGGACTTACCATGAGCACAAAGCAGAGGAGCATGTAGAAAGCGGTAAGGTCTTACCCTAG
7566864 CACATAGCAGAAGAGCCTGCAGAAA
66 CACATAGCAGAAGAGCCTGCAGAAA
7566889 CGGAAAGTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
88 35 0.46
89 27 0.36
90 14 0.18
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (91 bp):
CAGTAAGGACTTACCATGAGCACAAAGCAGAGGAGCATGTAGAAAGCGGTAAGGTCTTACCCTAG
CACATAGCAGAAGAGCCTGCAGAAAA
Found at i:7566889 original size:44 final size:44
Alignment explanation
Indices: 7566713--7566902 Score: 202
Period size: 44 Copynumber: 4.3 Consensus size: 44
7566703 GGAGCCTGCA
* * * * **
7566713 GTAAGGACTTACCCTGAGCACAAAGCCGAGGAGCATGTGGAAAGCG
1 GTAAGGTCTTACCCT-AGCACATAGCAGAGGAGCCTGCAGAAA-CG
* * * *
7566759 GTAAGGTTTTACCCTTGCACATAGCATAGGAGCCTGC-GAAAACA
1 GTAAGGTCTTACCCTAGCACATAGCAGAGGAGCCTGCAG-AAACG
* * *
7566803 GTAAGGTTTTACCATAGCACATAGCAGAGGAGCCTGTAGAAACG
1 GTAAGGTCTTACCCTAGCACATAGCAGAGGAGCCTGCAGAAACG
*
7566847 GTAAGGTCTTACCCTAGCACATAGCAGAAGAGCCTGCAGAAACG
1 GTAAGGTCTTACCCTAGCACATAGCAGAGGAGCCTGCAGAAACG
* *
7566891 GAAAGTTCTTAC
1 GTAAGGTCTTAC
7566903 AAGTCATAGA
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
44 89 0.73
45 20 0.16
46 13 0.11
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (44 bp):
GTAAGGTCTTACCCTAGCACATAGCAGAGGAGCCTGCAGAAACG
Found at i:7570659 original size:49 final size:49
Alignment explanation
Indices: 7570592--7570933 Score: 416
Period size: 49 Copynumber: 6.9 Consensus size: 49
7570582 AAAATTTTCG
* *
7570592 TTGTAAACTTCAGGTTTACCAAAACATGTGATTCAATCTCATTCAAAAC
1 TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTCAAAAC
* * *
7570641 TTGTAAACCTCTGATTTACCATAACATGTGGTTCAATCTCATTCAAAAC
1 TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTCAAAAC
* * *
7570690 TTGTAAGCTTCTGATTTACCATAACATGTCATTCAATCTCATTCAAAAC
1 TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTCAAAAC
* * * *
7570739 TTGTTAATTTTTGGTTTACAATAACATGTGATTCAATCTCATTCATACAAAC
1 TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTC--A-AAAC
* ** *
7570791 TTGTAAACTTCTGATTTATTATAACATGTGATTCAACCTCATTCAAAAC
1 TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTCAAAAC
* * * * * *
7570840 TTGTAATCTTCTGGTTTA-CTTGAATATGTAATTTAATCTCATTCACAAC
1 TTGTAAACTTCTGGTTTACCAT-AACATGTGATTCAATCTCATTCAAAAC
* * *
7570889 TTATAAACTTCTGGTTTACCATAACATGTGAATCAATATCATTCA
1 TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTCA
7570934 TATATGTGTG
Statistics
Matches: 248, Mismatches: 40, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
48 1 0.00
49 202 0.81
50 3 0.01
51 1 0.00
52 41 0.17
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.38
Consensus pattern (49 bp):
TTGTAAACTTCTGGTTTACCATAACATGTGATTCAATCTCATTCAAAAC
Found at i:7570878 original size:150 final size:149
Alignment explanation
Indices: 7570595--7570935 Score: 447
Period size: 150 Copynumber: 2.3 Consensus size: 149
7570585 ATTTTCGTTG
*
7570595 TAAACTTCAGGTTTACCAA-AACATGTGATTCAATCTCATTC--AAAACTTGTAAACCTCTGATT
1 TAAACTTCTGGTTTA-CAATAACATGTGATTCAATCTCATTCATAAAACTTGTAAACCTCTGATT
* * *
7570657 TACCATAACATGTGGTTCAATCTCATTCAAAACTTGTAAGCTTCTGATTTACCATAACATGTCAT
65 TACCATAACATGTGATTCAACCTCATTCAAAACTTGTAAGCTTCTGATTTACCATAACATGTAAT
*
7570722 TCAATCTCATTCAAAACTTG
130 TCAATCTCATTCAAAACTTA
* * * *
7570742 TTAATTTTTGGTTTACAATAACATGTGATTCAATCTCATTCATACAAACTTGTAAACTTCTGATT
1 TAAACTTCTGGTTTACAATAACATGTGATTCAATCTCATTCATA-AAACTTGTAAACCTCTGATT
** * * * *
7570807 TATTATAACATGTGATTCAACCTCATTCAAAACTTGTAATCTTCTGGTTTA-CTTGAATATGTAA
65 TACCATAACATGTGATTCAACCTCATTCAAAACTTGTAAGCTTCTGATTTACCAT-AACATGTAA
* *
7570871 TTTAATCTCATTCACAACTTA
129 TTCAATCTCATTCAAAACTTA
* * *
7570892 TAAACTTCTGGTTTACCATAACATGTGAATCAATATCATTCATA
1 TAAACTTCTGGTTTACAATAACATGTGATTCAATCTCATTCATA
7570936 TATGTGTGGT
Statistics
Matches: 166, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
146 3 0.02
147 33 0.20
149 3 0.02
150 127 0.77
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (149 bp):
TAAACTTCTGGTTTACAATAACATGTGATTCAATCTCATTCATAAAACTTGTAAACCTCTGATTT
ACCATAACATGTGATTCAACCTCATTCAAAACTTGTAAGCTTCTGATTTACCATAACATGTAATT
CAATCTCATTCAAAACTTA
Found at i:7575684 original size:19 final size:19
Alignment explanation
Indices: 7575656--7575704 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
7575646 ACACACACAC
*
7575656 GTTAACATAAGAAAACATA
1 GTTAAAATAAGAAAACATA
*
7575675 GTTAAAATAAAAGAAATCATA
1 GTTAAAAT--AAGAAAACATA
*
7575696 GTTCAAATA
1 GTTAAAATA
7575705 CTTAAACACT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 8 0.32
21 17 0.68
ACGTcount: A:0.57, C:0.08, G:0.10, T:0.24
Consensus pattern (19 bp):
GTTAAAATAAGAAAACATA
Done.