Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 62
Found at i:7831541 original size:21 final size:21
Alignment explanation
Indices: 7831473--7831541 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 21
7831463 AGATATTTAA
*
7831473 AATATAATAATTAATAT-TTTT
1 AATA-AATAATTAATATAATTT
7831494 AA-AATATAATATAATACTATTACTTT
1 AATAA-ATAAT-TAATA-TA--A-TTT
7831520 AATAAATAATTAATATAATTT
1 AATAAATAATTAATATAATTT
7831541 A
1 A
7831542 TAATATTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 16
0.70 0.02 0.29
Matches are distributed among these distances:
19 1 0.03
20 6 0.15
21 11 0.28
22 2 0.05
24 2 0.05
25 5 0.13
26 10 0.26
27 2 0.05
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
AATAAATAATTAATATAATTT
Found at i:7831545 original size:23 final size:23
Alignment explanation
Indices: 7831465--7831547 Score: 73
Period size: 23 Copynumber: 3.6 Consensus size: 23
7831455 TTTAATAAAG
7831465 ATATTTAAAATATAATAATTAAT
1 ATATTTAAAATATAATAATTAAT
*
7831488 ATTTTTAAAATATAAT-A-TAAT
1 ATATTTAAAATATAATAATTAAT
**
7831509 ACTATTACTTTAATA-AATAATTAAT
1 A-TATT--TAAAATATAATAATTAAT
*
7831534 ATAATTTATAATAT
1 AT-ATTTAAAATAT
7831548 TTTTATTTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
21 5 0.10
22 4 0.08
23 24 0.50
24 7 0.15
25 8 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATATTTAAAATATAATAATTAAT
Found at i:7831656 original size:23 final size:23
Alignment explanation
Indices: 7831618--7831662 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7831608 ATTTAATAAT
*
7831618 AAATAAATTATTTTAATGTTTTAA
1 AAATAAATTATATTAA-GTTTTAA
7831642 AAAT-AATTATATTAAGTTTTA
1 AAATAAATTATATTAAGTTTTA
7831663 TGATAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 10 0.50
24 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
AAATAAATTATATTAAGTTTTAA
Found at i:7831790 original size:21 final size:22
Alignment explanation
Indices: 7831749--7831804 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
7831739 AGGTTTAAAC
* *
7831749 AACATATTCCA-AACATCGTAA
1 AACATTTTCCAGAAAATCGTAA
7831770 AACATTTTCCAGAAAAT-GTAA
1 AACATTTTCCAGAAAATCGTAA
**
7831791 TTCATTTTCCAGAA
1 AACATTTTCCAGAA
7831805 TTCAATTTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (22 bp):
AACATTTTCCAGAAAATCGTAA
Found at i:7831808 original size:14 final size:14
Alignment explanation
Indices: 7831789--7831818 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7831779 CAGAAAATGT
*
7831789 AATTCATTTTCCAG
1 AATTCAATTTCCAG
7831803 AATTCAATTTCCAG
1 AATTCAATTTCCAG
7831817 AA
1 AA
7831819 AACCAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.37
Consensus pattern (14 bp):
AATTCAATTTCCAG
Found at i:7831908 original size:40 final size:43
Alignment explanation
Indices: 7831864--7831958 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
7831854 AAGAGTTTTA
**
7831864 AATTAAGT-AT-GATA-AAAAATGGAGGATTAATTTTAACCCT
1 AATTAAGTCATAGATAGAAAAAAAGAGGATTAATTTTAACCCT
*
7831904 AATTAAGTCATATATAGAAAAAAAGAGGATTAATTTTAACCCT
1 AATTAAGTCATAGATAGAAAAAAAGAGGATTAATTTTAACCCT
*
7831947 AATTAAATCATA
1 AATTAAGTCATA
7831959 TATATATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
40 8 0.17
41 2 0.04
42 3 0.06
43 35 0.73
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (43 bp):
AATTAAGTCATAGATAGAAAAAAAGAGGATTAATTTTAACCCT
Found at i:7835647 original size:64 final size:63
Alignment explanation
Indices: 7835506--7835663 Score: 160
Period size: 64 Copynumber: 2.5 Consensus size: 63
7835496 AATTGTTCAG
* * * *
7835506 TGTGTATCGATGCATAGGAAGTGCATCGATGCACCCCTTAAAAATGGAAATATCGAATGCAATT
1 TGTGTATCGATGCATAGGGAGTGCATCGATACACCCCTTAAAAATGAAAACATCGAATGC-ATT
* * * * * *
7835570 AGTGCATCAATGCATAGGGAGTGCATCGATACACCTCCTT-AAGATTAAAACATTGAAGGTGC-T
1 TGTGTATCGATGCATAGGGAGTGCATCGATACACC-CCTTAAAAATGAAAACATCGAA--TGCAT
7835633 T
63 T
7835634 TGTGTATCGATGCAT-GGGTAGTGCATCGAT
1 TGTGTATCGATGCATAGGG-AGTGCATCGAT
7835664 GCACATGTTA
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
63 3 0.04
64 67 0.87
65 4 0.05
66 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (63 bp):
TGTGTATCGATGCATAGGGAGTGCATCGATACACCCCTTAAAAATGAAAACATCGAATGCATT
Found at i:7835700 original size:24 final size:24
Alignment explanation
Indices: 7835655--7835700 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7835645 GCATGGGTAG
* *
7835655 TGCATCGATGCACATGTTAATGGA
1 TGCATCGATACACATGTGAATGGA
7835679 TGCATCGATACAC-TGTAGAATG
1 TGCATCGATACACATGT-GAATG
7835701 TATCGATGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (24 bp):
TGCATCGATACACATGTGAATGGA
Found at i:7839168 original size:21 final size:21
Alignment explanation
Indices: 7839142--7839181 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7839132 CAGAACCCCA
*
7839142 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
7839163 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
7839182 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:7839216 original size:20 final size:21
Alignment explanation
Indices: 7839162--7839224 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
7839152 GATTCCCCTG
7839162 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
7839186 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
7839206 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
7839225 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:7846752 original size:64 final size:65
Alignment explanation
Indices: 7846647--7846784 Score: 192
Period size: 64 Copynumber: 2.2 Consensus size: 65
7846637 TTCAGTGTGT
*
7846647 ATCGATGCA-CCCATTAAAAATGAAAACATCGAATGTAATTAGTGCATCGATGCATAAGG-AGTG
1 ATCGATGCACCCCATTAAAAATGAAAACATCGAAGGTAATTAGTGCATCGATGCAT-AGGTAGTG
7846710 C
65 C
* * * * *
7846711 ATCGATGCACCCCCTT-AAAATGAAAACATCGAAGGTGATTAGTGTATCGATGCATGGGTAGTGT
1 ATCGATGCACCCCATTAAAAATGAAAACATCGAAGGTAATTAGTGCATCGATGCATAGGTAGTGC
7846775 ATCGATGCAC
1 ATCGATGCAC
7846785 ATGTTAAAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
63 2 0.03
64 59 0.89
65 5 0.08
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (65 bp):
ATCGATGCACCCCATTAAAAATGAAAACATCGAAGGTAATTAGTGCATCGATGCATAGGTAGTGC
Found at i:7846817 original size:20 final size:20
Alignment explanation
Indices: 7846792--7846829 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7846782 CACATGTTAA
*
7846792 AGAATGCATTGATGCACTGT
1 AGAATGCATCGATGCACTGT
*
7846812 AGAATGTATCGATGCACT
1 AGAATGCATCGATGCACT
7846830 TCAAGGGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (20 bp):
AGAATGCATCGATGCACTGT
Found at i:7847416 original size:18 final size:18
Alignment explanation
Indices: 7847393--7847456 Score: 101
Period size: 18 Copynumber: 3.6 Consensus size: 18
7847383 GGGTCTACGC
7847393 GGTCCTTCGGGATATAGT
1 GGTCCTTCGGGATATAGT
* *
7847411 GGTCCTTTGGGACATAGT
1 GGTCCTTCGGGATATAGT
*
7847429 GGTCCTTTGGGATATAGT
1 GGTCCTTCGGGATATAGT
7847447 GGTCCTTCGG
1 GGTCCTTCGG
7847457 AACATATGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.14, C:0.17, G:0.34, T:0.34
Consensus pattern (18 bp):
GGTCCTTCGGGATATAGT
Found at i:7847441 original size:36 final size:36
Alignment explanation
Indices: 7847393--7847462 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
7847383 GGGTCTACGC
* *
7847393 GGTCCTTCGGGATATAGTGGTCCTTTGGGACATAGT
1 GGTCCTTCGGGATATAGTGGTCCTTCGGAACATAGT
*
7847429 GGTCCTTTGGGATATAGTGGTCCTTCGGAACATA
1 GGTCCTTCGGGATATAGTGGTCCTTCGGAACATA
7847463 TGTGTTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (36 bp):
GGTCCTTCGGGATATAGTGGTCCTTCGGAACATAGT
Found at i:7848716 original size:2 final size:2
Alignment explanation
Indices: 7848709--7848740 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7848699 ATGTAAAATG
7848709 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7848741 GACTATGAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7854426 original size:63 final size:64
Alignment explanation
Indices: 7854356--7854514 Score: 171
Period size: 63 Copynumber: 2.5 Consensus size: 64
7854346 ATCCCTTGAC
* * *
7854356 GGGTGCATCGATGCACTA-TCTATGCATCGGTGCA-TAAATCCCATTCGATGTTTGTA-TTTAAG
1 GGGTGCATCGATGCACTACT-TATGCATCGATACACT-AATCCCATTCGATGTTTGTATTTTAAA
7854418 G
64 G
* ** *
7854419 GGGTGCATCGATGCACTACTTGTGCATCGATACACTAATGGCATTCGATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTACTTATGCATCGATACACTAATCCCATTCGATGTTTGTATTTTAAAG
* * * * *
7854483 GCGTGCATCGATACACTTCATGTGCATCGATA
1 GGGTGCATCGATGCACTACTTATGCATCGATA
7854515 TACCTTGAAC
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
63 46 0.56
64 36 0.44
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (64 bp):
GGGTGCATCGATGCACTACTTATGCATCGATACACTAATCCCATTCGATGTTTGTATTTTAAAG
Found at i:7859760 original size:23 final size:25
Alignment explanation
Indices: 7859733--7859782 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
7859723 CCACTAGGGG
7859733 CTATG-AA-ATTTGTCCCGAAGGAC
1 CTATGTAATATTTGTCCCGAAGGAC
7859756 CTATGTAATGTATTTGTCCCGAAGGAC
1 CTATGTAA--TATTTGTCCCGAAGGAC
7859783 TACTCCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 5 0.22
24 2 0.09
27 16 0.70
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (25 bp):
CTATGTAATATTTGTCCCGAAGGAC
Found at i:7860484 original size:63 final size:65
Alignment explanation
Indices: 7860417--7860575 Score: 184
Period size: 63 Copynumber: 2.5 Consensus size: 65
7860407 ATCCCTTGAC
* * * *
7860417 GGGTGCATCGATGCACTATC-TATGCATCGATGCA-TAAATCTCATTCGATGTTTTTA-TTTAAG
1 GGGTGCATCGATGCACTATCATGTGCATCGATACACT-AATCGCATTCGATGTTTTTATTTTAAA
7860479 G
65 G
* * * *
7860480 GGGTGCATCGATGCATTA-CTTGTGCATCGATACACTGATGGCATTCGATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTATCATGTGCATCGATACACTAATCGCATTCGATGTTTTTATTTTAAAG
* *
7860544 GCGTGCATCGATACACT-TCATGTGCATCGATA
1 GGGTGCATCGATGCACTATCATGTGCATCGATA
7860576 TACCTTGAAC
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
62 1 0.01
63 46 0.57
64 34 0.42
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (65 bp):
GGGTGCATCGATGCACTATCATGTGCATCGATACACTAATCGCATTCGATGTTTTTATTTTAAAG
Found at i:7866109 original size:23 final size:23
Alignment explanation
Indices: 7866079--7866138 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
7866069 CATTTTATAT
7866079 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
*
7866102 GGCACTTCGGTGCAATTCTATGC
1 GGCACTTCGGTGCAATTCTACGC
*
7866125 GGCACTTTGGTGCA
1 GGCACTTCGGTGCA
7866139 TTTATACGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.17, C:0.27, G:0.28, T:0.28
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:7867704 original size:43 final size:43
Alignment explanation
Indices: 7867630--7867771 Score: 151
Period size: 43 Copynumber: 3.3 Consensus size: 43
7867620 TCACAACATA
* * *
7867630 TAGCGGTGTTTGTCTTTACAAACGTC-ACTATTGATTGTGTATT
1 TAGCGGCGTTTGTCTTTATAAAC-TCTACTATTGAATGTGTATT
* * *
7867673 TAGCGGCGTTTGTCTTTGTAAACTCTTCTATTGACTGTGTATT
1 TAGCGGCGTTTGTCTTTATAAACTCTACTATTGAATGTGTATT
* * * * *
7867716 TAACGGCGTTTATCTTTATAAACGCTGCTATTGAATGTCTATT
1 TAGCGGCGTTTGTCTTTATAAACTCTACTATTGAATGTGTATT
* *
7867759 TAGTGGCATTTGT
1 TAGCGGCGTTTGT
7867772 AAATACAAAC
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 2 0.02
43 80 0.98
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.44
Consensus pattern (43 bp):
TAGCGGCGTTTGTCTTTATAAACTCTACTATTGAATGTGTATT
Found at i:7867802 original size:43 final size:43
Alignment explanation
Indices: 7867645--7867909 Score: 178
Period size: 43 Copynumber: 6.3 Consensus size: 43
7867635 GTGTTTGTCT
* * * * **
7867645 TTACAAACGTCACTATTGATTGTGTATTTAGCGGCGTTTGTCT
1 TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
** * ** * * * **
7867688 TTGTAAACTCTTCTATTGACTGTGTATTTAACGGCGTTTATCT
1 TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
* * * * *
7867731 TTATAAACGCTGCTATTGAATGTCTATTTAGTGGCATTTGTAA
1 TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
* * * ** * **
7867774 ATACAAACGCCGCTATTGACTATGTATTTAACAACGTTTGTCT
1 TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
* **
7867817 TTACAAA---CG-TATTGACTGTGTATTTAGCGGCATTTTTCT
1 TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
* * *
7867856 TTACAAACGGCGCTATTGACTGTGTATTTAGTGGCCTTTGTAA
1 TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
*
7867899 TTAAAAACGCC
1 TTACAAACGCC
7867910 TTAAATAAGC
Statistics
Matches: 171, Mismatches: 47, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
39 31 0.18
40 2 0.01
42 2 0.01
43 136 0.80
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (43 bp):
TTACAAACGCCGCTATTGACTGTGTATTTAGCGGCATTTGTAA
Found at i:7868513 original size:15 final size:15
Alignment explanation
Indices: 7868493--7868521 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7868483 AAAATAACAG
7868493 AACTATACACATTAA
1 AACTATACACATTAA
7868508 AACTATACACATTA
1 AACTATACACATTA
7868522 GTTCACCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
AACTATACACATTAA
Found at i:7871133 original size:41 final size:41
Alignment explanation
Indices: 7871055--7871263 Score: 294
Period size: 41 Copynumber: 5.1 Consensus size: 41
7871045 TTTAGCGACA
* *
7871055 TTTGTATAAAAACGCCATTTAA-TACGAGTCTATAGCGGCG
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCG
* * *
7871095 TTTGTATAAAAACGCTACTAAAGTACGAGTTTATAGCGGCA
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCG
* *
7871136 TTTGTATAAAAACGTCACTAAAGTACGAGTCTATAGCGGTG
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCG
* * * *
7871177 TTTGTATAAAAACACCACTAAAGTATGAGTCTATAGAGGCA
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCG
* *
7871218 TTTGTATAAAAACGCCACTAAAGTACGAGTCTTTAGTGGCG
1 TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCG
7871259 TTTGT
1 TTTGT
7871264 TCTAAAAATG
Statistics
Matches: 147, Mismatches: 21, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 19 0.13
41 128 0.87
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30
Consensus pattern (41 bp):
TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCG
Found at i:7871956 original size:29 final size:29
Alignment explanation
Indices: 7871907--7871967 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
7871897 TCAAATTTAA
*
7871907 ACCTATAGTATCGATATTGTTCTTCCAGT
1 ACCTATAGTATCGATACTGTTCTTCCAGT
*
7871936 ACCTATAGTATCGGTACTGTTCTTCCAGT
1 ACCTATAGTATCGATACTGTTCTTCCAGT
7871965 ACC
1 ACC
7871968 GATACCCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (29 bp):
ACCTATAGTATCGATACTGTTCTTCCAGT
Found at i:7878167 original size:45 final size:45
Alignment explanation
Indices: 7878115--7878403 Score: 355
Period size: 45 Copynumber: 6.4 Consensus size: 45
7878105 ATAGCATGAG
* **
7878115 TGGCACCTTTTATGCCAATAATGCACAATTATGCATTTTCA-TTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
7878159 GCGGCACCTTTTATACCGATAATGCACCGTTATGTATTTTCATTTA
1 -TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * * *
7878205 TGGTACATTTTATGCTGATAATGCACCGTTATGAATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * * **
7878250 TGGCACATTTTATGCCAATAATGTACTATTATGCATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* *
7878295 TGGCACCTTTTATGTCGATAATTCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
7878340 TGACACCTTTTATGCTGATAATGCACCGTTATGTATTTTCATTTA
1 TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
7878385 TGTCACCATTTATGTCGAT
1 TGGCACCTTTTATGCCGAT
7878404 CCATTGATTT
Statistics
Matches: 208, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 205 0.99
46 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (45 bp):
TGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATTTA
Found at i:7878357 original size:135 final size:135
Alignment explanation
Indices: 7878115--7878395 Score: 420
Period size: 135 Copynumber: 2.1 Consensus size: 135
7878105 ATAGCATGAG
*
7878115 TGGCACCTTTTATGCCAATAATGCACAATTATGCATTTTCATTAGCGGCACCTTTTATACCGATA
1 TGGCACATTTTATGCCAATAATGCACAATTATGCATTTTCATTAGCGGCACCTTTTATACCGATA
* **
7878180 ATGCACCGTTATGTATTTTCATTTATGGTACATTTTATGCTGATAATGCACCGTTATGAATTTTC
66 ATGCACCGTTATGCATTTTCATTTATGACACATTTTATGCTGATAATGCACCGTTATGAATTTTC
7878245 ATTTA
131 ATTTA
* * * **
7878250 TGGCACATTTTATGCCAATAATGTACTATTATGCATTTTCATTTA-TGGCACCTTTTATGTCGAT
1 TGGCACATTTTATGCCAATAATGCACAATTATGCATTTTCA-TTAGCGGCACCTTTTATACCGAT
* * *
7878314 AATTCACCGTTATGCATTTTCATTTATGACACCTTTTATGCTGATAATGCACCGTTATGTATTTT
65 AATGCACCGTTATGCATTTTCATTTATGACACATTTTATGCTGATAATGCACCGTTATGAATTTT
7878379 CATTTA
130 CATTTA
*
7878385 TGTCACCATTT
1 TGGCA-CATTT
7878396 ATGTCGATCC
Statistics
Matches: 131, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
135 123 0.94
136 8 0.06
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.43
Consensus pattern (135 bp):
TGGCACATTTTATGCCAATAATGCACAATTATGCATTTTCATTAGCGGCACCTTTTATACCGATA
ATGCACCGTTATGCATTTTCATTTATGACACATTTTATGCTGATAATGCACCGTTATGAATTTTC
ATTTA
Found at i:7878391 original size:25 final size:25
Alignment explanation
Indices: 7878317--7878391 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
7878307 TGTCGATAAT
*
7878317 TCACCGTTATGCATTTTCATTTATG
1 TCACCGTTATGTATTTTCATTTATG
* ** * *
7878342 ACACC-TT-T-TATGCTGA-TAATG
1 TCACCGTTATGTATTTTCATTTATG
7878363 -CACCGTTATGTATTTTCATTTATG
1 TCACCGTTATGTATTTTCATTTATG
7878387 TCACC
1 TCACC
7878392 ATTTATGTCG
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 4 0.11
21 6 0.17
22 5 0.14
23 6 0.17
24 6 0.17
25 8 0.23
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (25 bp):
TCACCGTTATGTATTTTCATTTATG
Found at i:7889447 original size:17 final size:18
Alignment explanation
Indices: 7889418--7889453 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7889408 TTTAATCCGA
*
7889418 TATCTTCATATATTTATT
1 TATCTTCATATATATATT
7889436 TATCTT-ATATATATATT
1 TATCTTCATATATATATT
7889453 T
1 T
7889454 GTTAACTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (18 bp):
TATCTTCATATATATATT
Found at i:7892999 original size:23 final size:23
Alignment explanation
Indices: 7892973--7893025 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
7892963 CACCACAGCT
*
7892973 CGTATAAATACACCGAAGTGCCA
1 CGTAGAAATACACCGAAGTGCCA
* *
7892996 CGTAGAATTACACCGAAGTGCCG
1 CGTAGAAATACACCGAAGTGCCA
7893019 CGTAGAA
1 CGTAGAA
7893026 TTGTACCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.17
Consensus pattern (23 bp):
CGTAGAAATACACCGAAGTGCCA
Found at i:7893026 original size:23 final size:23
Alignment explanation
Indices: 7892981--7893037 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
7892971 CTCGTATAAA
7892981 TACACCGAAGTGCCACGTAGAAT
1 TACACCGAAGTGCCACGTAGAAT
*
7893004 TACACCGAAGTGCCGCGTAGAAT
1 TACACCGAAGTGCCACGTAGAAT
**
7893027 TGTACCGAAGT
1 TACACCGAAGT
7893038 TCCATATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (23 bp):
TACACCGAAGTGCCACGTAGAAT
Found at i:7896039 original size:9 final size:8
Alignment explanation
Indices: 7896000--7896037 Score: 67
Period size: 8 Copynumber: 4.6 Consensus size: 8
7895990 TTTTTTCAAC
7896000 TTTTTCTCT
1 TTTTTC-CT
7896009 TTTTTCCT
1 TTTTTCCT
7896017 TTTTTCCT
1 TTTTTCCT
7896025 TTTTTCCT
1 TTTTTCCT
7896033 TTTTT
1 TTTTT
7896038 TCTAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 23 0.79
9 6 0.21
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCCT
Found at i:7896423 original size:2 final size:2
Alignment explanation
Indices: 7896416--7896454 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7896406 ATAGTTAACT
7896416 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7896455 GAAGAAGTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7897588 original size:19 final size:19
Alignment explanation
Indices: 7897564--7897603 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7897554 CAATAATTAC
7897564 TCCCCCTTACTCTAACACT
1 TCCCCCTTACTCTAACACT
7897583 TCCCCCTTACTCTAACACT
1 TCCCCCTTACTCTAACACT
7897602 TC
1 TC
7897604 TCCCATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (19 bp):
TCCCCCTTACTCTAACACT
Found at i:7899311 original size:20 final size:20
Alignment explanation
Indices: 7899282--7899319 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7899272 AAGAACCCCA
*
7899282 GGGGGTATCGATTCCCCTGT
1 GGGGGAATCGATTCCCCTGT
*
7899302 GGGGGAATCGGTTCCCCT
1 GGGGGAATCGATTCCCCT
7899320 TCAAAGGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCCTGT
Found at i:7899362 original size:20 final size:20
Alignment explanation
Indices: 7899282--7899362 Score: 56
Period size: 20 Copynumber: 3.9 Consensus size: 20
7899272 AAGAACCCCA
* *
7899282 GGGGGTATCGATTCCC-CTGT
1 GGGGGAATCGATTCCCTC-AT
* *
7899302 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGATT-CCC-TC-AT
*
7899325 GGGGGAATCGGTTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
* *
7899345 GGGGGGATCGATTTCCTC
1 GGGGGAATCGATTCCCTC
7899363 TGCACCAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
20 27 0.55
21 5 0.10
22 3 0.06
23 14 0.29
ACGTcount: A:0.15, C:0.25, G:0.35, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:7905485 original size:3 final size:3
Alignment explanation
Indices: 7905477--7905505 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7905467 TTGGGTGATT
7905477 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
7905506 GGGATGGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:7905890 original size:51 final size:51
Alignment explanation
Indices: 7905812--7905926 Score: 169
Period size: 51 Copynumber: 2.3 Consensus size: 51
7905802 ATGACTAAGG
* *
7905812 AATAAAATAATAATAAACTATAGATAATGTTTCGATTCAACCCTAATTCCT
1 AATAAAATAATAATAAACTATAGATAATGTTTCAACTCAACCCTAATTCCT
* * *
7905863 AATAAAATAATAATAAACTA-AGAATAATGTTTTAACTCAATCTTAATTCCT
1 AATAAAATAATAATAAACTATAG-ATAATGTTTCAACTCAACCCTAATTCCT
7905914 AATAAAATAATAA
1 AATAAAATAATAA
7905927 ATCTAATTCT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 2 0.03
51 56 0.97
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.33
Consensus pattern (51 bp):
AATAAAATAATAATAAACTATAGATAATGTTTCAACTCAACCCTAATTCCT
Found at i:7906526 original size:19 final size:18
Alignment explanation
Indices: 7906504--7906541 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
7906494 ATTTATATGT
*
7906504 TTTATAAAATTAATATTTA
1 TTTAAAAAATTAA-ATTTA
7906523 TTTAAAAAATTAAATTTA
1 TTTAAAAAATTAAATTTA
7906541 T
1 T
7906542 GATATTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAAAAATTAAATTTA
Found at i:7908087 original size:2 final size:2
Alignment explanation
Indices: 7908082--7908116 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7908072 TTAATCATTA
7908082 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7908117 ATTACTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7911530 original size:25 final size:25
Alignment explanation
Indices: 7911479--7911530 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
7911469 AGCTCGGACA
*
7911479 AAAATAGAAAATTATATTATATTAT
1 AAAATAGAAAATTATATTATATAAT
*
7911504 AAAATGGAAAATTAT-TTATTATAAT
1 AAAATAGAAAATTATATTA-TATAAT
7911529 AA
1 AA
7911531 TAAATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (25 bp):
AAAATAGAAAATTATATTATATAAT
Found at i:7911556 original size:16 final size:16
Alignment explanation
Indices: 7911520--7911567 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
7911510 GAAAATTATT
*
7911520 TATTATAATAATA-AA
1 TATTTTAATAATATAA
7911535 TAATTTTAATAATATAA
1 T-ATTTTAATAATATAA
* *
7911552 TATTTAAATATTATAA
1 TATTTTAATAATATAA
7911568 AAATATATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 1 0.04
16 24 0.86
17 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TATTTTAATAATATAA
Found at i:7911572 original size:24 final size:24
Alignment explanation
Indices: 7911523--7911574 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7911513 AATTATTTAT
* *
7911523 TATAATAATAAATAATTTTAATAA
1 TATAATAATAAATAATTATAAAAA
*
7911547 TATAATATTTAAAT-ATTATAAAAA
1 TATAATA-ATAAATAATTATAAAAA
7911571 TATA
1 TATA
7911575 TGATATTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
TATAATAATAAATAATTATAAAAA
Found at i:7911831 original size:93 final size:90
Alignment explanation
Indices: 7911659--7911832 Score: 206
Period size: 93 Copynumber: 1.9 Consensus size: 90
7911649 ATATATTACT
*
7911659 TAATTATTAAATATTTAAAATATATTTATTAATAATTTTTTAAAATATAATATAACATTCTTAGT
1 TAATTATTAAATAATTAAAATATATTTATTAATAATTTTTTAAAATATAATATAACATTCTTAGT
** *
7911724 TTAATATTATAATAATGTATTTTAA
66 TTAATAAAAAAATAATGTATTTTAA
* * * * * *
7911749 TAATTAATTAATATAATTAATA-ATATTTATTATTTATTATTTTAATATTATAATATAATATTTT
1 TAATT-ATTAA-ATAATTAAAATATATTTATTAATAATT-TTTTAA-AATATAATATAACATTCT
*
7911813 TATTTTAATAAAAAAATAAT
62 TAGTTTAATAAAAAAATAAT
7911833 TTAATTGATA
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
90 5 0.07
91 19 0.28
92 14 0.20
93 31 0.45
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (90 bp):
TAATTATTAAATAATTAAAATATATTTATTAATAATTTTTTAAAATATAATATAACATTCTTAGT
TTAATAAAAAAATAATGTATTTTAA
Found at i:7911915 original size:25 final size:25
Alignment explanation
Indices: 7911850--7911921 Score: 63
Period size: 28 Copynumber: 2.7 Consensus size: 25
7911840 ATAATATTTT
***
7911850 TATTTTAATAAAATATCATAGTCTTAA
1 TATTTTAATAAAAT-T-ATAGAAATAA
7911877 TATTTTATTTATAAAATTATAGAAATAA
1 TATTTTA---ATAAAATTATAGAAATAA
*
7911905 TATTTTAATAATATTAT
1 TATTTTAATAAAATTAT
7911922 TAACATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 9 0.24
27 7 0.18
28 14 0.37
29 1 0.03
30 7 0.18
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (25 bp):
TATTTTAATAAAATTATAGAAATAA
Found at i:7912268 original size:17 final size:17
Alignment explanation
Indices: 7912246--7912285 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
7912236 AAACTCTACA
7912246 AACAAAAGAATTAAACC
1 AACAAAAGAATTAAACC
7912263 AACAAAAGAATTAAACC
1 AACAAAAGAATTAAACC
7912280 AACAAA
1 AACAAA
7912286 CAAATGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.68, C:0.17, G:0.05, T:0.10
Consensus pattern (17 bp):
AACAAAAGAATTAAACC
Found at i:7912287 original size:21 final size:19
Alignment explanation
Indices: 7912243--7912289 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
7912233 GCTAAACTCT
7912243 ACAAACAAAAGAATTAAAC
1 ACAAACAAAAGAATTAAAC
7912262 -C-AACAAAAGAATTAAACC
1 ACAAACAAAAGAATTAAA-C
7912280 AACAAACAAA
1 -ACAAACAAA
7912290 TGAAATTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 15 0.62
18 2 0.08
20 1 0.04
21 6 0.25
ACGTcount: A:0.68, C:0.19, G:0.04, T:0.09
Consensus pattern (19 bp):
ACAAACAAAAGAATTAAAC
Found at i:7915983 original size:11 final size:11
Alignment explanation
Indices: 7915969--7915995 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7915959 ATATTTATTT
7915969 AATTTAATTAA
1 AATTTAATTAA
7915980 AATTTAATTAA
1 AATTTAATTAA
7915991 AATTT
1 AATTT
7915996 TATATTGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AATTTAATTAA
Found at i:7917376 original size:29 final size:29
Alignment explanation
Indices: 7917344--7917422 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 29
7917334 AGAATCGGTA
* * *
7917344 AAAAATAACCGAAAATGTTATTAGGCGTT
1 AAAAATGATCGAAAATGTTATTAGGCGCT
**
7917373 AAAAATGATCGAAAAACATTATTAGGCGCT
1 AAAAATGATCG-AAAATGTTATTAGGCGCT
*
7917403 AAAAATGATTGAAAATGTTA
1 AAAAATGATCGAAAATGTTA
7917423 AAAAAATGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 16 0.39
30 25 0.61
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (29 bp):
AAAAATGATCGAAAATGTTATTAGGCGCT
Found at i:7917395 original size:30 final size:30
Alignment explanation
Indices: 7917361--7917417 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
7917351 ACCGAAAATG
*
7917361 TTATTAGGCGTTAAAAATGATCGAAAAACA
1 TTATTAGGCGCTAAAAATGATCGAAAAACA
*
7917391 TTATTAGGCGCTAAAAATGATTGAAAA
1 TTATTAGGCGCTAAAAATGATCGAAAA
7917418 TGTTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.28
Consensus pattern (30 bp):
TTATTAGGCGCTAAAAATGATCGAAAAACA
Found at i:7923358 original size:19 final size:19
Alignment explanation
Indices: 7923306--7923360 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
7923296 TATCGTTATA
* *
7923306 TATATACTTTTAATTCTTTT
1 TATATA-TTTTTATTATTTT
**
7923326 TCATATATCATTATTATTTT
1 T-ATATATTTTTATTATTTT
7923346 TATATATTTTTATTA
1 TATATATTTTTATTA
7923361 CTATAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 11 0.39
21 5 0.18
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (19 bp):
TATATATTTTTATTATTTT
Found at i:7923365 original size:16 final size:15
Alignment explanation
Indices: 7923346--7923401 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
7923336 TTATTATTTT
7923346 TATATATTTTTATTA
1 TATATATTTTTATTA
* *
7923361 CTATA-ATTATATGTTA
1 -TATATATT-TTTATTA
*
7923377 TATATATTTATTATTT
1 TATATATTT-TTATTA
7923393 TATATATTT
1 TATATATTT
7923402 CATTTTATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 8 0.25
16 24 0.75
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TATATATTTTTATTA
Found at i:7923424 original size:15 final size:15
Alignment explanation
Indices: 7923404--7923435 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7923394 ATATATTTCA
*
7923404 TTTTATCTTTTATTT
1 TTTTATCTTCTATTT
7923419 TTTTATCTTCTATTT
1 TTTTATCTTCTATTT
7923434 TT
1 TT
7923436 ATTTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATCTTCTATTT
Found at i:7923452 original size:20 final size:20
Alignment explanation
Indices: 7923405--7923458 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
7923395 TATATTTCAT
*
7923405 TTTATCTTTTATTTTTTTATC
1 TTTAT-TTTTATTTTTGTATC
7923426 TTCTATTTTTATTTTTGTAT-
1 TT-TATTTTTATTTTTGTATC
*
7923446 TGTTATTGTTATT
1 T-TTATTTTTATT
7923459 ATCTTCTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 10 0.34
21 16 0.55
22 3 0.10
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (20 bp):
TTTATTTTTATTTTTGTATC
Found at i:7923502 original size:33 final size:29
Alignment explanation
Indices: 7923448--7923512 Score: 51
Period size: 32 Copynumber: 2.1 Consensus size: 29
7923438 TTTTGTATTG
*
7923448 TTATTGTTATTATCTTCTTTATTTTATGTATT
1 TTATT-TTATTATATT-TTTATTTT-TGTATT
*
7923480 TTATTTATATATATATATTTTATATTTGT-TT
1 TTATTT-TAT-TATAT-TTTTATTTTTGTATT
7923511 TT
1 TT
7923513 GTGCCTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
31 5 0.18
32 11 0.39
33 11 0.39
34 1 0.04
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (29 bp):
TTATTTTATTATATTTTTATTTTTGTATT
Found at i:7923647 original size:11 final size:11
Alignment explanation
Indices: 7923610--7923647 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
7923600 ACCTTCTTTA
7923610 TTTTATT-CAT
1 TTTTATTACAT
*
7923620 TTTTACTACAT
1 TTTTATTACAT
7923631 TTTTATTACAT
1 TTTTATTACAT
7923642 TTTTAT
1 TTTTAT
7923648 CTAACATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 6 0.24
11 19 0.76
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTATTACAT
Found at i:7935130 original size:110 final size:110
Alignment explanation
Indices: 7934932--7935135 Score: 302
Period size: 110 Copynumber: 1.9 Consensus size: 110
7934922 TCCCAGTTTC
* *
7934932 AGAGCCAATTTCAACTTCACAGCGAGGGATATTGGACTCAAGACAACACAAGCTCAACTTCACAA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGAACTCAAGACAACACAAGCTCAACTTCACAA
* *
7934997 CGAAGGGGCGACTGATTGTCAACAAATAACTTTTCAGTTTCATTT
66 CAAAGGGGCGACTGACTGTCAACAAATAACTTTTCAGTTTCATTT
* * * * * *
7935042 AGAGTCAATTTTAACTTCACATCGAAGGATATTGAACTCGAGATAACACAAGCTCAACTTCACAG
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGAACTCAAGACAACACAAGCTCAACTTCACAA
7935107 CAAAGGGGC-AGCTGACTGTCAACAAATAA
66 CAAAGGGGCGA-CTGACTGTCAACAAATAA
7935136 TTTCCAGAGC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
109 1 0.01
110 82 0.99
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (110 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGATATTGAACTCAAGACAACACAAGCTCAACTTCACAA
CAAAGGGGCGACTGACTGTCAACAAATAACTTTTCAGTTTCATTT
Found at i:7936704 original size:16 final size:15
Alignment explanation
Indices: 7936682--7936740 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 15
7936672 TCATTATTAT
7936682 TTATATATATTTTTA
1 TTATATATATTTTTA
* *
7936697 TTACTATA-ATTATATG
1 TTA-TATATATT-TTTA
7936713 TTATATATATTTATTA
1 TTATATATATTT-TTA
*
7936729 TTTTATATATTT
1 TTATATATATTT
7936741 CATTTTATCT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 11 0.31
16 24 0.69
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TTATATATATTTTTA
Found at i:7936763 original size:15 final size:15
Alignment explanation
Indices: 7936743--7936774 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7936733 ATATATTTCA
*
7936743 TTTTATCTTTTATTT
1 TTTTATCTTCTATTT
7936758 TTTTATCTTCTATTT
1 TTTTATCTTCTATTT
7936773 TT
1 TT
7936775 ATTTTGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATCTTCTATTT
Found at i:7937014 original size:16 final size:17
Alignment explanation
Indices: 7936986--7937029 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
7936976 TATTATTATA
* *
7936986 TATTTCATTTTATCTTT
1 TATTTTATTTTATCTTC
7937003 TATTTT-TTTTATCTTC
1 TATTTTATTTTATCTTC
7937019 TATTTTATTTT
1 TATTTTATTTT
7937030 TGTATTGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 15 0.62
17 9 0.38
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (17 bp):
TATTTTATTTTATCTTC
Found at i:7937081 original size:256 final size:257
Alignment explanation
Indices: 7936545--7937081 Score: 937
Period size: 256 Copynumber: 2.1 Consensus size: 257
7936535 TTTATTATTC
7936545 TTATTATTATTATATATATATATATTAATTATCTTTATTTGGCTATTTTTTTATATTTTTTTAAT
1 TTATTATTA-TATATATATATATATTAATTATCTTTATTTGGCTATTTTTTTATATTTTTTTAAT
7936610 TTTCTATATTCTATCGTTATTTATATATATATATATATAAACTTTTAATTCTTTTTCATAAATCA
65 TTTCTATATTCTATCGTTATTTATATATATATATATATAAACTTTTAATTCTTTTTCATAAATCA
7936675 TTATTATTTATATATATTTTTATTACTATAATTATATGTTATATATATTTATTATTTTATATATT
130 TTATTATTTATATATATTTTTATTACTATAATTATATGTTATATATA-TTATTA-TTTATATATT
7936740 TCATTTTATCTTTTATTTTTTTATCTTCTATTTTTATTTTGTATGTTATTGTATTATCTTCTTTA
193 TCATTTTATCTTTTATTTTTTTATCTTCTATTTTTATTTTGTATGTTATTGTATTATCTTCTTTA
*
7936805 TT-TTATGAT-TATAT-TATATATTAATTATCTTTATTTGGCTATTTTTTTATATTTTTTTAATT
1 TTATTATTATATATATATATATATTAATTATCTTTATTTGGCTATTTTTTTATATTTTTTTAATT
7936867 TTCTATATTCTATCGTTATTTATATATATATATATATAAACTTTTAATTCTTTTTCATAAATCAT
66 TTCTATATTCTATCGTTATTTATATATATATATATATAAACTTTTAATTCTTTTTCATAAATCAT
7936932 TATTATTTATATATATTTTTATTACTATAATTATATG-T-TATATA-TATTA-TTATATATTTCA
131 TATTATTTATATATATTTTTATTACTATAATTATATGTTATATATATTATTATTTATATATTTCA
*
7936993 TTTTATCTTTTATTTTTTTTATCTTCTA-TTTTATTTTTGTATTGTTATTGTTTTATCTTCTTTA
196 TTTTATCTTTTA-TTTTTTTATCTTCTATTTTTA-TTTTGTA-TGTTATTGTATTATCTTCTTTA
7937057 TTATGTATTATATATATATATATAT
1 TTAT-TATTATATATATATATATAT
7937082 ATATTATATT
Statistics
Matches: 267, Mismatches: 3, Indels: 18
0.93 0.01 0.06
Matches are distributed among these distances:
250 29 0.11
251 22 0.08
252 28 0.10
253 1 0.00
254 11 0.04
255 6 0.02
256 157 0.59
257 5 0.02
258 1 0.00
259 5 0.02
260 2 0.01
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (257 bp):
TTATTATTATATATATATATATATTAATTATCTTTATTTGGCTATTTTTTTATATTTTTTTAATT
TTCTATATTCTATCGTTATTTATATATATATATATATAAACTTTTAATTCTTTTTCATAAATCAT
TATTATTTATATATATTTTTATTACTATAATTATATGTTATATATATTATTATTTATATATTTCA
TTTTATCTTTTATTTTTTTATCTTCTATTTTTATTTTGTATGTTATTGTATTATCTTCTTTA
Found at i:7939450 original size:36 final size:36
Alignment explanation
Indices: 7939402--7939538 Score: 161
Period size: 36 Copynumber: 3.8 Consensus size: 36
7939392 GATACATCCT
* * *
7939402 TCCGTTCAACTTGAATCGGAAGTGTTGATGTTTCCC
1 TCCGTTCGACTTGAATCAGAAGTGTCGATGTTTCCC
* * * * *
7939438 TCCGTTTGACTTGAATCGGGAGTGCCGACGCTTT-CC
1 TCCGTTCGACTTGAATCAGAAGTGTCGATG-TTTCCC
* *
7939474 TCCGTTCGACTTGAATCAGAAGTGTCGATGCTTCCT
1 TCCGTTCGACTTGAATCAGAAGTGTCGATGTTTCCC
7939510 TCCGTTCGACTTGAATCAGAAGTG-CGATG
1 TCCGTTCGACTTGAATCAGAAGTGTCGATG
7939539 CATTCTTTCG
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
35 7 0.08
36 76 0.88
37 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (36 bp):
TCCGTTCGACTTGAATCAGAAGTGTCGATGTTTCCC
Found at i:7941502 original size:103 final size:105
Alignment explanation
Indices: 7941357--7941574 Score: 323
Period size: 103 Copynumber: 2.1 Consensus size: 105
7941347 ATTCAACACA
* * * *
7941357 ATTATCAATATAAATTGTGATGAATTTGTTTGACACTAAAAATATATTTTGTGACCATCAATATT
1 ATTATCAATAGAAATTGGGATAAATTTGTTTGACACTAAAAATATATTTTGTGACCACCAATATT
*
7941422 GTCACACT-AA-GATTTTTAATGACCAAATGTTCGATACT
66 GTCACACTAAATGATTTTTAATGACCAAATGTTCGAAACT
* * *
7941460 ATTATCAATAGAAATTGGGATAAATTTGTTTGACAGTGAAAATATATTTTGTGACCACCAATGTT
1 ATTATCAATAGAAATTGGGATAAATTTGTTTGACACTAAAAATATATTTTGTGACCACCAATATT
* * *
7941525 GTCACACTAAATGTTTTTTAGTGACCAAATGTTCGAAATT
66 GTCACACTAAATGATTTTTAATGACCAAATGTTCGAAACT
7941565 ATTATCAATA
1 ATTATCAATA
7941575 ACTCAATCAT
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
103 66 0.65
104 2 0.02
105 34 0.33
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (105 bp):
ATTATCAATAGAAATTGGGATAAATTTGTTTGACACTAAAAATATATTTTGTGACCACCAATATT
GTCACACTAAATGATTTTTAATGACCAAATGTTCGAAACT
Found at i:7943478 original size:24 final size:24
Alignment explanation
Indices: 7943451--7943521 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
7943441 AATTGTCATC
7943451 ACAAATCACCAATTAAGACTAGTG
1 ACAAATCACCAATTAAGACTAGTG
* * *
7943475 ACAAA--AACAATT--G--TCGTC
1 ACAAATCACCAATTAAGACTAGTG
*
7943493 ACAAATCACCAACTAAGACTAGTG
1 ACAAATCACCAATTAAGACTAGTG
7943517 ACAAA
1 ACAAA
7943522 ATGTTTTCTC
Statistics
Matches: 34, Mismatches: 7, Indels: 12
0.64 0.13 0.23
Matches are distributed among these distances:
18 8 0.24
20 6 0.18
22 7 0.21
24 13 0.38
ACGTcount: A:0.48, C:0.23, G:0.11, T:0.18
Consensus pattern (24 bp):
ACAAATCACCAATTAAGACTAGTG
Found at i:7943495 original size:42 final size:42
Alignment explanation
Indices: 7943436--7943522 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
7943426 ATTCACTTCC
* *
7943436 AAAATAATTGTCATCACAAATCACCAATTAAGACTAGTGACA
1 AAAACAATTGTCATCACAAATCACCAACTAAGACTAGTGACA
*
7943478 AAAACAATTGTCGTCACAAATCACCAACTAAGACTAGTGACA
1 AAAACAATTGTCATCACAAATCACCAACTAAGACTAGTGACA
7943520 AAA
1 AAA
7943523 TGTTTTCTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21
Consensus pattern (42 bp):
AAAACAATTGTCATCACAAATCACCAACTAAGACTAGTGACA
Found at i:7943979 original size:21 final size:21
Alignment explanation
Indices: 7943946--7943989 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7943936 AATATATATG
7943946 AAAAAATTATTTTTA-AATTAT
1 AAAAAA-TATTTTTATAATTAT
7943967 AAAAACAT-TTTTTATAATTAT
1 AAAAA-ATATTTTTATAATTAT
7943988 AA
1 AA
7943990 TTTCAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 14 0.67
22 1 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAAAATATTTTTATAATTAT
Found at i:7944403 original size:14 final size:14
Alignment explanation
Indices: 7944384--7944412 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7944374 AATTAAAATC
7944384 TATTTTAAATTGAA
1 TATTTTAAATTGAA
7944398 TATTTTAAATTGAA
1 TATTTTAAATTGAA
7944412 T
1 T
7944413 TTTGAAGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TATTTTAAATTGAA
Found at i:7960441 original size:22 final size:23
Alignment explanation
Indices: 7960399--7960463 Score: 114
Period size: 22 Copynumber: 2.9 Consensus size: 23
7960389 TGCCATGTAA
7960399 TTGTCCCGAATGACCACATAGGT
1 TTGTCCCGAATGACCACATAGGT
7960422 TTGTCCCGAATGA-CACATAGGT
1 TTGTCCCGAATGACCACATAGGT
*
7960444 TTGTCCCGAAGGACCACATA
1 TTGTCCCGAATGACCACATA
7960464 AAACCCTCGA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
22 21 0.52
23 19 0.47
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (23 bp):
TTGTCCCGAATGACCACATAGGT
Found at i:7961164 original size:20 final size:20
Alignment explanation
Indices: 7961119--7961170 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
7961109 ATTTCAATTA
*
7961119 CAGTATCGATACCTTCCTCT
1 CAGTATCGATACCTTCCACT
**
7961139 TGGTATCGATACC-TCCACAT
1 CAGTATCGATACCTTCCAC-T
7961159 CAGTATCGATAC
1 CAGTATCGATAC
7961171 TTCGATAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (20 bp):
CAGTATCGATACCTTCCACT
Found at i:7969525 original size:12 final size:12
Alignment explanation
Indices: 7969508--7969595 Score: 67
Period size: 12 Copynumber: 7.3 Consensus size: 12
7969498 AATCAAAGCA
7969508 AAAAGAAAAAAG
1 AAAAGAAAAAAG
*
7969520 AAAAGAAAAGA-
1 AAAAGAAAAAAG
*
7969531 AAAAGCAAAAAG
1 AAAAGAAAAAAG
*
7969543 CAAAGAGAAAAA-
1 AAAAGA-AAAAAG
**
7969555 ATGAGAAAAAA-
1 AAAAGAAAAAAG
7969566 ACAAAG-AAAAAG
1 A-AAAGAAAAAAG
7969578 AAGAAGAAAAAGAG
1 AA-AAGAAAAA-AG
7969592 AAAA
1 AAAA
7969596 CAAAGACAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
11 21 0.36
12 23 0.39
13 11 0.19
14 4 0.07
ACGTcount: A:0.77, C:0.03, G:0.18, T:0.01
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:7969529 original size:24 final size:23
Alignment explanation
Indices: 7969502--7969595 Score: 84
Period size: 24 Copynumber: 3.9 Consensus size: 23
7969492 AGATCAAATC
7969502 AAAGCAAAAAGAAAAAAGAAAAGA
1 AAAG-AAAAAGAAAAAAGAAAAGA
*
7969526 AAAGAAAAAGCAAAAAGCAAAGAGA
1 AAAGAAAAAGAAAAAAG-AAA-AGA
**
7969551 AAA-AATGAGAAAAAA-ACAAAGAA
1 AAAGAAAAAGAAAAAAGA-AAAG-A
*
7969574 AAAGAAGAAGAAAAAGAGAAAA
1 AAAGAAAAAGAAAAA-AGAAAA
7969596 CAAAGACAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
22 3 0.05
23 18 0.32
24 25 0.44
25 10 0.18
26 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.01
Consensus pattern (23 bp):
AAAGAAAAAGAAAAAAGAAAAGA
Found at i:7969538 original size:30 final size:29
Alignment explanation
Indices: 7969502--7969587 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 29
7969492 AGATCAAATC
7969502 AAAGCAAAAAGAAAAAAGAAAAGAAAAGAA
1 AAAGCAAAAAG-AAAAAGAAAAGAAAAGAA
* *
7969532 AAAGCAAAAAGCAAAGAGAAAA-AATGAGAA
1 AAAGCAAAAAG-AAAAAGAAAAGAA-AAGAA
7969562 AAA--AACAAAGAAAAAGAAGAAGAAAA
1 AAAGCAA-AAAGAAAAAGAA-AAGAAAA
7969588 AGAGAAAACA
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
28 9 0.19
29 9 0.19
30 29 0.62
ACGTcount: A:0.77, C:0.05, G:0.17, T:0.01
Consensus pattern (29 bp):
AAAGCAAAAAGAAAAAGAAAAGAAAAGAA
Found at i:7970515 original size:26 final size:25
Alignment explanation
Indices: 7970455--7970526 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
7970445 AGAAAGGGAT
*
7970455 AATATTTTTTCAAAATTTTTTATTA
1 AATATTTTTTCAAAATTTTTTAATA
*
7970480 AACATATTTTTCAAAATTCTTTTAATA
1 AATAT-TTTTTCAAAATT-TTTTAATA
*
7970507 GATA-TTTTTC--AATTTTTTAA
1 AATATTTTTTCAAAATTTTTTAA
7970527 AATAAAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
22 6 0.15
23 4 0.10
25 10 0.24
26 12 0.29
27 9 0.22
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.56
Consensus pattern (25 bp):
AATATTTTTTCAAAATTTTTTAATA
Found at i:7972579 original size:67 final size:67
Alignment explanation
Indices: 7972467--7972717 Score: 385
Period size: 67 Copynumber: 3.7 Consensus size: 67
7972457 TCTGTTACCT
* * ** * *
7972467 TTTGAGATTGTTTCTCTTGAAAAAAAATCATGTCTCGCTTAAGACAGTTTCTTTTGAAACATAAA
1 TTTGAGATTGTTTCTCTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAA
*
7972532 GC
66 CC
*
7972534 TTTGAGATTGTTTCTCTTGAAACAAAGTTTTGTCTCACTTGAGACAGTTTCTCTTGAAACATAAA
1 TTTGAGATTGTTTCTCTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAA
7972599 CC
66 CC
* * *
7972601 TTTGAGATTATTTCTCTTGAAACAAAGTTTTGTCTTGCTTGAGTCAGTTTCTCTTGAAACATAAA
1 TTTGAGATTGTTTCTCTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAA
7972666 CC
66 CC
* *
7972668 TTTGAGATTGTTTTTCTTGAAACAAAGTTTTGTCTCGCTTGAGATAGTTT
1 TTTGAGATTGTTTCTCTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTT
7972718 TGTTGGGATT
Statistics
Matches: 167, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 167 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (67 bp):
TTTGAGATTGTTTCTCTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAA
CC
Found at i:7976831 original size:20 final size:21
Alignment explanation
Indices: 7976801--7976840 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7976791 TAGCCGTTGG
7976801 GCCTGATGGTATCGATACTAA
1 GCCTGATGGTATCGATACTAA
7976822 GCCT-ATGGTATCGATACTA
1 GCCTGATGGTATCGATACTA
7976841 CTATGTAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (21 bp):
GCCTGATGGTATCGATACTAA
Found at i:7976940 original size:20 final size:20
Alignment explanation
Indices: 7976915--7976986 Score: 144
Period size: 20 Copynumber: 3.6 Consensus size: 20
7976905 CAATATTGGT
7976915 AGTATCGATACTACCTAGTG
1 AGTATCGATACTACCTAGTG
7976935 AGTATCGATACTACCTAGTG
1 AGTATCGATACTACCTAGTG
7976955 AGTATCGATACTACCTAGTG
1 AGTATCGATACTACCTAGTG
7976975 AGTATCGATACT
1 AGTATCGATACT
7976987 TCCCTTACCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTATCGATACTACCTAGTG
Found at i:7977313 original size:67 final size:67
Alignment explanation
Indices: 7977205--7977330 Score: 189
Period size: 67 Copynumber: 1.9 Consensus size: 67
7977195 ACAAGTTTCT
**** *
7977205 CTTGAAACATAAACCTTTAAGATTGTTTCTCTTAAAACAAAGTTTTATCTCGCTTGAGAAAGATT
1 CTTGAAACATAAACCTTTAAGATCAAATCTCTTAAAACAAAGTTTCATCTCGCTTGAGAAAGATT
7977270 CC
66 CC
* *
7977272 CTTGAAACATAAACCTTTGAGATCAAATCTCTTGAAACAAAGTTTCATCTCGCTTGAGA
1 CTTGAAACATAAACCTTTAAGATCAAATCTCTTAAAACAAAGTTTCATCTCGCTTGAGA
7977331 CGGTTTTCCC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 52 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (67 bp):
CTTGAAACATAAACCTTTAAGATCAAATCTCTTAAAACAAAGTTTCATCTCGCTTGAGAAAGATT
CC
Found at i:7978280 original size:139 final size:139
Alignment explanation
Indices: 7977709--7978280 Score: 657
Period size: 139 Copynumber: 4.1 Consensus size: 139
7977699 ATGACTAGAT
* * * * * * *
7977709 TTCCTCATCACGAAAGAACTGTGTTGTCTCCAAATTATCCCTAAAGATAACTATATGTCTTCATG
1 TTCCTCATCACGAAGGAACCGTGTTATCTCCAAATTATCCCTAAAGACAGCTAGATGTCTTCATC
* * * * * *
7977774 ACTAAGTAACAATGTCATCCACCGACTAGATTTCCTCAACGCGAAGGAGCAGTGTTATCCTCAGA
66 ACGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACGCAAAGGAGCAGTGTCATCCTCAGA
*
7977839 CAATTAGAC
131 CAATCAGAC
* * * *
7977848 TTCCTCATCACGAAGGAATCATGTTATCTCCAAATTATCCTTAAAGACAGCTCA-ACGTCTTCAT
1 TTCCTCATCACGAAGGAACCGTGTTATCTCCAAATTATCCCTAAAGACAGCT-AGATGTCTTCAT
*
7977912 CACGAAGGAACAATGTCATCCACCAACCAGATCTCCTCAACGCAAAGGAGCAGTGTCATCCTCAG
65 CACGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACGCAAAGGAGCAGTGTCATCCTCAG
*
7977977 ATAATCAGAC
130 ACAATCAGAC
* * ** * * **
7977987 TTCCTTAACGTGAAAGAATCGTGTTATCTCCAAATTATCCCTAAAGACAGCTAGATGTCAACATC
1 TTCCTCATCACGAAGGAACCGTGTTATCTCCAAATTATCCCTAAAGACAGCTAGATGTCTTCATC
* * * * * * *
7978052 ACGAAGGAACAA---CGTCCACTGTCCAGATCTCCTCATCGCGAAGGAGTAGTGTCATCCTCATA
66 ACGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACGCAAAGGAGCAGTGTCATCCTCAGA
7978114 CAATCAGAC
131 CAATCAGAC
* * ** * * *
7978123 TTCCTCAACGCGAAGGAACCGCATTGTCTCCAAATTATCCCTAAAGACAGCTAGATGTCCTCGTC
1 TTCCTCATCACGAAGGAACCGTGTTATCTCCAAATTATCCCTAAAGACAGCTAGATGTCTTCATC
* * * * * * *
7978188 ACGAAGGAACAATGTCGTCCATCGACTAGATCTCCGCAATGCAAAGGAACAATGTCATCCTCAGA
66 ACGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACGCAAAGGAGCAGTGTCATCCTCAGA
7978253 CAATCAGAC
131 CAATCAGAC
*
7978262 TTCCTCATCATGAAGGAAC
1 TTCCTCATCACGAAGGAAC
7978281 AATGTCGTCC
Statistics
Matches: 365, Mismatches: 63, Indels: 10
0.83 0.14 0.02
Matches are distributed among these distances:
136 117 0.32
138 1 0.00
139 246 0.67
140 1 0.00
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (139 bp):
TTCCTCATCACGAAGGAACCGTGTTATCTCCAAATTATCCCTAAAGACAGCTAGATGTCTTCATC
ACGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACGCAAAGGAGCAGTGTCATCCTCAGA
CAATCAGAC
Found at i:7978316 original size:83 final size:83
Alignment explanation
Indices: 7978180--7978351 Score: 209
Period size: 83 Copynumber: 2.1 Consensus size: 83
7978170 CAGCTAGATG
* * **
7978180 TCCTCGTCACGAAGGAACAATGTCGTCCATCGACTAGATCTCCGCAATGCAAAGGAACAATGTCA
1 TCCTCATCACGAAGGAACAATGTCGTCCATCGACCAGATCTCCGCAACACAAAGGAACAATGTCA
*
7978245 TCCTCAGACAATCAGACT
66 TACTCAGACAATCAGACT
* * * * * ** *
7978263 TCCTCATCATGAAGGAACAATGTCGTCCATCGACCATATCTCCTCTACACAAAGTAGTAGTGTCA
1 TCCTCATCACGAAGGAACAATGTCGTCCATCGACCAGATCTCCGCAACACAAAGGAACAATGTCA
* *
7978328 TACTTAGACAATTAGACT
66 TACTCAGACAATCAGACT
7978346 TCCTCA
1 TCCTCA
7978352 ATGCGAAGGA
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
83 74 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (83 bp):
TCCTCATCACGAAGGAACAATGTCGTCCATCGACCAGATCTCCGCAACACAAAGGAACAATGTCA
TACTCAGACAATCAGACT
Found at i:7979943 original size:30 final size:30
Alignment explanation
Indices: 7979905--7979973 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
7979895 GGTACAGACT
* * *
7979905 CTGCTAACCATTAACCGCTAACATTTCTAA
1 CTGCTAACCACTAACAGCTAACATTACTAA
*
7979935 CTGTTAACCACTAACAGCTAACATTACTAA
1 CTGCTAACCACTAACAGCTAACATTACTAA
7979965 CTGCTAACC
1 CTGCTAACC
7979974 TTTTATTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (30 bp):
CTGCTAACCACTAACAGCTAACATTACTAA
Found at i:7980154 original size:16 final size:16
Alignment explanation
Indices: 7980119--7980152 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7980109 ATTTCTGTTA
*
7980119 TTTAATTTTATGCACT
1 TTTAAATTTATGCACT
7980135 TTTAAATTTATGC-CT
1 TTTAAATTTATGCACT
7980150 TTT
1 TTT
7980153 TATCTTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTAAATTTATGCACT
Found at i:7983611 original size:30 final size:30
Alignment explanation
Indices: 7983568--7983648 Score: 117
Period size: 33 Copynumber: 2.6 Consensus size: 30
7983558 AAAAGTAATT
*
7983568 TAAACTTTCAGTTATTAAAATATTAATAAAA
1 TAAA-TTTGAGTTATTAAAATATTAATAAAA
7983599 TAAATTTGAGTTATTAATAAAATATTAATAAAA
1 TAAATTTGAGTTA-T--TAAAATATTAATAAAA
7983632 TAAATTTGAGTTATTAA
1 TAAATTTGAGTTATTAA
7983649 TAGATGTCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
30 11 0.24
31 5 0.11
32 1 0.02
33 29 0.63
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (30 bp):
TAAATTTGAGTTATTAAAATATTAATAAAA
Found at i:7983625 original size:33 final size:33
Alignment explanation
Indices: 7983583--7983650 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
7983573 TTTCAGTTAT
7983583 TAAAATATTAATAAAATAAATTTGAGTTATTAA
1 TAAAATATTAATAAAATAAATTTGAGTTATTAA
7983616 TAAAATATTAATAAAATAAATTTGAGTTATTAA
1 TAAAATATTAATAAAATAAATTTGAGTTATTAA
7983649 TA
1 TA
7983651 GATGTCATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (33 bp):
TAAAATATTAATAAAATAAATTTGAGTTATTAA
Found at i:7989656 original size:29 final size:29
Alignment explanation
Indices: 7989613--7989695 Score: 148
Period size: 29 Copynumber: 2.8 Consensus size: 29
7989603 CTCACCTAAC
7989613 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTACT
*
7989643 TAAATGATGTAAGCAATGACATCTTTACT
1 TAAATGATGTAAGCAATGACATCATTACT
7989672 TAAATGATGTAAGCAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
7989696 ATTTAGTTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 47 0.92
30 4 0.08
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.31
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTACT
Found at i:7993084 original size:15 final size:15
Alignment explanation
Indices: 7993064--7993093 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7993054 CTTTCTCATA
7993064 GTTGTTGTTGGAATT
1 GTTGTTGTTGGAATT
*
7993079 GTTGTTGTTGTAATT
1 GTTGTTGTTGGAATT
7993094 CCAGCCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
GTTGTTGTTGGAATT
Found at i:7994421 original size:29 final size:29
Alignment explanation
Indices: 7994378--7994460 Score: 148
Period size: 29 Copynumber: 2.8 Consensus size: 29
7994368 CTCACCTAAC
7994378 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTACT
*
7994408 TAAATGATGTAAGCAATGACATCTTTACT
1 TAAATGATGTAAGCAATGACATCATTACT
7994437 TAAATGATGTAAGCAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
7994461 ATTTAGTTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 47 0.92
30 4 0.08
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.31
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTACT
Found at i:7998477 original size:21 final size:22
Alignment explanation
Indices: 7998432--7998481 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
7998422 ATTTATCTTT
*
7998432 TAAATTTTATATAAAATATAGA
1 TAAATTTTATATAAAAAATAGA
*
7998454 TAAATTTTAT-TAAAAAATATA
1 TAAATTTTATATAAAAAATAGA
7998475 TAAATTT
1 TAAATTT
7998482 AAAATAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TAAATTTTATATAAAAAATAGA
Found at i:7998528 original size:14 final size:14
Alignment explanation
Indices: 7998509--7998539 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7998499 TGTTTTCAAT
7998509 TTTTTATATAAATA
1 TTTTTATATAAATA
*
7998523 TTTTTATTTAAATA
1 TTTTTATATAAATA
7998537 TTT
1 TTT
7998540 AGAATTCCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTTATATAAATA
Found at i:7999306 original size:22 final size:22
Alignment explanation
Indices: 7999257--7999300 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7999247 TAATAATTTT
* *
7999257 GATTAATTTGGTTAATTTGAAA
1 GATTAATTCGGTTAAATTGAAA
7999279 GATTAATTCGGTTAAAATTGAA
1 GATTAATTCGGTT-AAATTGAA
7999301 GTTTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (22 bp):
GATTAATTCGGTTAAATTGAAA
Found at i:8000978 original size:18 final size:18
Alignment explanation
Indices: 8000955--8000989 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8000945 GTGATAATCC
8000955 TAAAATA-ATAAGAAATTT
1 TAAAATATATAA-AAATTT
8000973 TAAAATATATAAAAATT
1 TAAAATATATAAAAATT
8000990 CATAATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
TAAAATATATAAAAATTT
Found at i:8001848 original size:22 final size:21
Alignment explanation
Indices: 8001800--8001877 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 21
8001790 TCATGTAAGA
*
8001800 ATATAATATAAAATATGCAA-C
1 ATATAATAT-GAATATGCAACC
* *
8001821 ATATAATATGAATATGTGAATC
1 ATATAATATGAATATG-CAACC
*
8001843 ATATAATATATAATATGCAACC
1 ATATAATAT-GAATATGCAACC
8001865 ATATAATATGAAT
1 ATATAATATGAAT
8001878 GAAAACATGC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.12
21 14 0.29
22 22 0.46
23 6 0.12
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (21 bp):
ATATAATATGAATATGCAACC
Found at i:8005694 original size:3 final size:3
Alignment explanation
Indices: 8005635--8005676 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8005625 ATATGTTCCG
8005635 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8005677 GTTTTACTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8008152 original size:34 final size:33
Alignment explanation
Indices: 8008108--8008172 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
8008098 AGAGGCATCG
*
8008108 TTTGATGAAACATCATATTTTTTGAAGGCACAT
1 TTTGATGAAACATCATATTCTTTGAAGGCACAT
** *
8008141 TTTGTATGAAACATTGTATTCTTTGGAGGCAC
1 TTTG-ATGAAACATCATATTCTTTGAAGGCAC
8008173 CCTTTAGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (33 bp):
TTTGATGAAACATCATATTCTTTGAAGGCACAT
Found at i:8008184 original size:34 final size:33
Alignment explanation
Indices: 8008111--8008191 Score: 81
Period size: 34 Copynumber: 2.4 Consensus size: 33
8008101 GGCATCGTTT
** * *
8008111 GATGAAACATCATATTTTTTGAAGGCACATTTT
1 GATGAAACATTGTATTCTTTGAAGGCACATTTA
* *
8008144 GTATGAAACATTGTATTCTTTGGAGGCACCCTTTA
1 G-ATGAAACATTGTATTCTTTGAAGGCA-CATTTA
*
8008179 GATGAAGCATTGT
1 GATGAAACATTGT
8008192 GTCTCTCCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 1 0.03
34 33 0.85
35 5 0.13
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.37
Consensus pattern (33 bp):
GATGAAACATTGTATTCTTTGAAGGCACATTTA
Found at i:8008536 original size:44 final size:45
Alignment explanation
Indices: 8008435--8008543 Score: 202
Period size: 45 Copynumber: 2.4 Consensus size: 45
8008425 CATTTAACCT
8008435 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTTATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTTATTCC
*
8008480 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA-TTATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTTATTCC
8008524 ATAAGCTCGTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTT
8008544 GCATGATTAC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
44 27 0.43
45 36 0.57
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.39
Consensus pattern (45 bp):
ATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTTATTCC
Found at i:8008728 original size:61 final size:61
Alignment explanation
Indices: 8008653--8008767 Score: 176
Period size: 61 Copynumber: 1.9 Consensus size: 61
8008643 GTAGTGCTAA
* * * *
8008653 ACCTACACTAAGCTTACGCCATAGTTCTAATTCGGATATGACACATAAGGTCGTGCCCACC
1 ACCTACACTAAGCTTACGCCATAGTGCTAATCCGAACATGACACATAAGGTCGTGCCCACC
* *
8008714 ACCTACACTAAGCTTACGCTATAGTGCTAATCCGAACATGATACATAAGGTCGT
1 ACCTACACTAAGCTTACGCCATAGTGCTAATCCGAACATGACACATAAGGTCGT
8008768 ATCCACCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (61 bp):
ACCTACACTAAGCTTACGCCATAGTGCTAATCCGAACATGACACATAAGGTCGTGCCCACC
Found at i:8010711 original size:30 final size:30
Alignment explanation
Indices: 8010667--8010751 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 30
8010657 TTGTAATTTT
* *
8010667 CCAAAATTACACTTTGGTCCCTAAACTTT-
1 CCAAATTTATACTTTGGTCCCTAAACTTTA
*
8010696 TCAAAGTTTATACTTTGGTCACC-AAACTTTA
1 CCAAA-TTTATACTTTGGTC-CCTAAACTTTA
* *
8010727 CCAAATTTATAATTTGGTCACTAAA
1 CCAAATTTATACTTTGGTCCCTAAA
8010752 TAAATCTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 5 0.11
30 35 0.76
31 6 0.13
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.36
Consensus pattern (30 bp):
CCAAATTTATACTTTGGTCCCTAAACTTTA
Found at i:8011775 original size:411 final size:411
Alignment explanation
Indices: 8011008--8011831 Score: 1373
Period size: 411 Copynumber: 2.0 Consensus size: 411
8010998 TTTAGGGTTA
* *
8011008 TACAAACTGGTAAGACGTGCCCTTGCCTTATGTGAAAACCTCTTATGGTCTTACCAACTTCTTGA
1 TACAAACTGGTAAGACGTGCCATTGCCTTATGCGAAAACCTCTTATGGTCTTACCAACTTCTTGA
8011073 ATTTCGATTTTTGTCCTCCTTAATTTGAAAATTTTATGAAGATCATACAAATCATTAGATTTGGA
66 ATTTCGATTTTTGTCCTCCTTAATTTGAAAATTTTATGAAGATCATACAAATCATTAGATTTGGA
*
8011138 AGCTATTTAATCCAAATCTTCAACCTGATATGAAAATGTGCAGATAGTATTTCTTCATATCATCC
131 AGCTATTTAATCCAAATCTTCAACCTGATATGAAAATGTGCAGATAGTATTTCTTCATATCATCA
* *
8011203 TCTCTTTTACAAGTAACATCCTAGACATTATGATTTTGCTAAATCACTTTGATTAGAAGAATCGT
196 TCTCTTTCACAAGTAACATCCTAGACATTATGATTTTGCTAAATCACTTTGAATAGAAGAATCGT
* * *
8011268 CATGCTACGTAGTTCTTTGATTTCTCAAGCCAAGATCCATATTGGTTCTTCTTTATAAATTAAAT
261 CATGCTACGTAGTTCTTTGATTTCTCAAGCCAAGATCCATATTGATTCTTCTTCATAAATCAAAT
* * * * *
8011333 GTGGTCGGATCTTAATTTTCTTTGATGAAATGATATGTGAAAGATTCAATTGATACTTTCTAAGC
326 CTGGTCGAATCTTAATTTTCTTTGATGAAATGATATGTAAAAGATCCAATCGATACTTTCTAAGC
8011398 ATCGACACATGAAAAACATTG
391 ATCGACACATGAAAAACATTG
* * * * *
8011419 TACAGACTGGTAAGACGTGCCATTGTCTTATGCCGTAAACCTCTTCTGGTCTTGCCAACTTCTTG
1 TACAAACTGGTAAGACGTGCCATTGCCTTATG-CGAAAACCTCTTATGGTCTTACCAACTTCTTG
* * *
8011484 AATTTTGATTTTT-TCCTCCTTAATTTGAAAATTTTGTGAAGATCATGCAAATCATTAGATTTGG
65 AATTTCGATTTTTGTCCTCCTTAATTTGAAAATTTTATGAAGATCATACAAATCATTAGATTTGG
*
8011548 AAGCTATTTAATCCAAATCTTCAACCTGATATGAAAATGTGCAGATATTATTTCTTCATATCATC
130 AAGCTATTTAATCCAAATCTTCAACCTGATATGAAAATGTGCAGATAGTATTTCTTCATATCATC
* * *
8011613 ATCTCTTTCACAAGTAACATCCTCGACATTATGATTTTGTTAAATCACTTTGAATAGAGGAATCG
195 ATCTCTTTCACAAGTAACATCCTAGACATTATGATTTTGCTAAATCACTTTGAATAGAAGAATCG
8011678 TCATGCTACGTAGTTCTTTGATTTCTCAAGCCAAGATCCATATTGATTCTTCTTCATAAATCAAA
260 TCATGCTACGTAGTTCTTTGATTTCTCAAGCCAAGATCCATATTGATTCTTCTTCATAAATCAAA
*
8011743 TCTTGTCGAATCTT-ATTTTCCTTTGATGAAATGATATGTAAAAGATCCAATCGATACTTTCTAA
325 TCTGGTCGAATCTTAATTTT-CTTTGATGAAATGATATGTAAAAGATCCAATCGATACTTTCTAA
*
8011807 GCATCGATACATGAAAAACATTG
389 GCATCGACACATGAAAAACATTG
8011830 TA
1 TA
8011832 TACTTTGTCT
Statistics
Matches: 384, Mismatches: 27, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
410 5 0.01
411 339 0.88
412 40 0.10
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (411 bp):
TACAAACTGGTAAGACGTGCCATTGCCTTATGCGAAAACCTCTTATGGTCTTACCAACTTCTTGA
ATTTCGATTTTTGTCCTCCTTAATTTGAAAATTTTATGAAGATCATACAAATCATTAGATTTGGA
AGCTATTTAATCCAAATCTTCAACCTGATATGAAAATGTGCAGATAGTATTTCTTCATATCATCA
TCTCTTTCACAAGTAACATCCTAGACATTATGATTTTGCTAAATCACTTTGAATAGAAGAATCGT
CATGCTACGTAGTTCTTTGATTTCTCAAGCCAAGATCCATATTGATTCTTCTTCATAAATCAAAT
CTGGTCGAATCTTAATTTTCTTTGATGAAATGATATGTAAAAGATCCAATCGATACTTTCTAAGC
ATCGACACATGAAAAACATTG
Found at i:8013066 original size:2 final size:2
Alignment explanation
Indices: 8013055--8013094 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
8013045 GTTTTCTTTT
8013055 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8013094 T
1 T
8013095 TTGTTTAGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.09
2 32 0.91
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8014795 original size:3 final size:3
Alignment explanation
Indices: 8014787--8014825 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
8014777 TATTTTAATA
8014787 TAT TAT TAT TAT TAT TAT TAT TAT TAAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TA
8014826 ATTTACATGC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:8015551 original size:18 final size:17
Alignment explanation
Indices: 8015514--8015561 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
8015504 ATACAACCCA
*
8015514 AAATAA-AAAATCCATC
1 AAATAAGAAAATCCAGC
8015530 -AATAAGAAAATCACAGC
1 AAATAAGAAAATC-CAGC
8015547 AAATAATGAAAATCC
1 AAATAA-GAAAATCC
8015562 TTTCTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 6 0.22
17 3 0.11
18 6 0.22
19 7 0.26
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (17 bp):
AAATAAGAAAATCCAGC
Found at i:8025456 original size:16 final size:15
Alignment explanation
Indices: 8025425--8025465 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
8025415 CACCATCAAT
*
8025425 AATCCAAAATCCAAC
1 AATCCAAAATCAAAC
8025440 AATCCACAAATCAAAC
1 AATCCA-AAATCAAAC
*
8025456 ATTCCAAAAT
1 AATCCAAAAT
8025466 ATTCAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (15 bp):
AATCCAAAATCAAAC
Found at i:8027440 original size:21 final size:21
Alignment explanation
Indices: 8027414--8027453 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8027404 CAGAACCCCA
*
8027414 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
8027435 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
8027454 TCAAAGGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:8031265 original size:22 final size:21
Alignment explanation
Indices: 8031223--8031262 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8031213 GAGTTTGTTT
*
8031223 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
8031244 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
8031263 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:8034248 original size:19 final size:20
Alignment explanation
Indices: 8034205--8034242 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8034195 CCCCCTTTGA
*
8034205 AGGGGAACCGATTCCCCCAC
1 AGGGGAACCGATACCCCCAC
*
8034225 AGGGGAATCGATACCCCC
1 AGGGGAACCGATACCCCC
8034243 CTGGGGTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGGGAACCGATACCCCCAC
Found at i:8037284 original size:246 final size:247
Alignment explanation
Indices: 8036849--8037344 Score: 985
Period size: 246 Copynumber: 2.0 Consensus size: 247
8036839 AACGGCTATA
8036849 TGATCTTCTCTAATCATCCCCAACGTTCAGAAGTGATTCAAGATGTATTTAAACAAGTTCTGAAG
1 TGATCTTCTCTAATCATCCCCAACGTTCAGAAGTGATTCAAGATGTATTTAAACAAGTTCTGAAG
8036914 CCCTTGATCAACAAGAATTCATAGAGAAACAAGAGAGAAAGCATCAAACACCAAGTTTGTGCAAA
66 CCCTTGATCAACAAGAATTCATAGAGAAACAAGAGAGAAAGCATCAAACACCAAGTTTGTGCAAA
8036979 TCAAGACAATTTTCCTTTCAATATTCATTTTGCTTTCAAGAACACCATTTGTGCTCATTTGTAAT
131 TCAAGACAATTTTCCTTTCAATATTCATTTTGCTTTCAAGAACACCATTTGTGCTCATTTGTAAT
8037044 TATCTTTGAGTGTTCTTTTCTTGTTCTAGAATTGTGCAAACATCTTACCTTG
196 TATCTTTGAGTGTTCTTTTCTTGTTCTAGAATTGTGCAAACATCTTACCTTG
8037096 TGATCTTCTCTAATCATCCCCAACGTTCAGAAGTGATTCAAGATGTATTTAAACAAGTTCTGAAG
1 TGATCTTCTCTAATCATCCCCAACGTTCAGAAGTGATTCAAGATGTATTTAAACAAGTTCTGAAG
8037161 CCCTTGATC-ACAAGAATTCATAGAGAAACAAGAGAGAAAGCATCAAACACCAAGTTTGTGCAAA
66 CCCTTGATCAACAAGAATTCATAGAGAAACAAGAGAGAAAGCATCAAACACCAAGTTTGTGCAAA
8037225 TCAAGACAATTTTCCTTTCAATATTCATTTTGCTTTCAAGAACACCATTTGTGCTCATTTGTAAT
131 TCAAGACAATTTTCCTTTCAATATTCATTTTGCTTTCAAGAACACCATTTGTGCTCATTTGTAAT
8037290 TATCTTTGAGTGTTCTTTTCTTGTTCTAGAATTGTGCAAACATCTTACCTTG
196 TATCTTTGAGTGTTCTTTTCTTGTTCTAGAATTGTGCAAACATCTTACCTTG
8037342 TGA
1 TGA
8037345 GGTTTTCCTT
Statistics
Matches: 249, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
246 175 0.70
247 74 0.30
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (247 bp):
TGATCTTCTCTAATCATCCCCAACGTTCAGAAGTGATTCAAGATGTATTTAAACAAGTTCTGAAG
CCCTTGATCAACAAGAATTCATAGAGAAACAAGAGAGAAAGCATCAAACACCAAGTTTGTGCAAA
TCAAGACAATTTTCCTTTCAATATTCATTTTGCTTTCAAGAACACCATTTGTGCTCATTTGTAAT
TATCTTTGAGTGTTCTTTTCTTGTTCTAGAATTGTGCAAACATCTTACCTTG
Found at i:8043003 original size:134 final size:133
Alignment explanation
Indices: 8042756--8043257 Score: 790
Period size: 134 Copynumber: 3.8 Consensus size: 133
8042746 TAGTGAAGCA
* * * * *
8042756 CATCCAGATCTGACATTCCCTTCAGAAGAAGTGGAACAAATCATTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGAAACATATCACTCTTTTTCAAGATTTGATATT
* *
8042821 CCCTGAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACAACGGAATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGC-GAATGGATC
8042886 AACT
130 AACT
*
8042890 CAACCAGATCTGATATTCCCTTCAGAAGAAGCGAAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGAAACATATCACTCTTTTTCAAGATTTGATATT
* * * *
8042955 CTCTGAGTGACAGCAGAACAAGTCTACCACGATTCAATCTTCCATGAGTGATAGCAGAATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGC-GAATGGATC
8043020 AACT
130 AACT
* * * * *
8043024 CATCTAGATATGATATTCCCTTTAGAAGAAACGGAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGAAACATATCACTCTTTTTCAAGATTTGATATT
*
8043089 CCCTGAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACAGCGAGATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGA-ATGGATC
8043154 AACT
130 AACT
*
8043158 CATCCAGATCTGATATTCCCTTCAAAAGAAGC-AGAACATATCACTCTTTTTCAAGATTTGATAT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGA-AACATATCACTCTTTTTCAAGATTTGATAT
8043222 TCCCTGAGTGACAGCGGAACAAGTCTACCACGATTC
65 TCCCTGAGTGACAGCGGAACAAGTCTACCACGATTC
8043258 CCCCTGAGAT
Statistics
Matches: 335, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
133 2 0.01
134 333 0.99
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (133 bp):
CATCCAGATCTGATATTCCCTTCAGAAGAAGCGAAACATATCACTCTTTTTCAAGATTTGATATT
CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGAATGGATCA
ACT
Found at i:8044181 original size:18 final size:17
Alignment explanation
Indices: 8044144--8044191 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
8044134 ATACAACCCA
*
8044144 AAATAA-AAAATCCATC
1 AAATAAGAAAATCCAGC
8044160 -AATAAGAAAATCGCAGC
1 AAATAAGAAAATC-CAGC
8044177 AAATAATGAAAATCC
1 AAATAA-GAAAATCC
8044192 TTTCTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 6 0.22
17 3 0.11
18 6 0.22
19 7 0.26
ACGTcount: A:0.58, C:0.17, G:0.08, T:0.17
Consensus pattern (17 bp):
AAATAAGAAAATCCAGC
Found at i:8052820 original size:134 final size:134
Alignment explanation
Indices: 8052580--8053161 Score: 959
Period size: 134 Copynumber: 4.3 Consensus size: 134
8052570 TAGTGAAGCA
* * * * *
8052580 CATCCAGATCTGACATTCCCTTCAGAAGAAGCGGAATAAATCATTCTTTTACAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
*
8052645 C-CTTGAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACAGCGGAATGGAT
66 CTC-TGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGAT
8052709 CAACT
130 CAACT
*
8052714 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGAAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
*
8052779 CTCTGAGTGATAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
66 CTCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
8052844 AACT
131 AACT
*
8052848 CATCCAGATCTGATATTCCCTTTAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
* * * *
8052913 CCCTGAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACATCGAAATGGATC
66 CTCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
8052978 AACT
131 AACT
* * * *
8052982 CATCCAGATCTGATATTCCCTTCAAAAGAAGCAGAACAAATCACTCTTTTTCAAGATTTGATTTT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
* * *
8053047 CTCTGAGTGACAGCGGAACAAGTCTACCACAATTCAATCTTCCCTGAGTAATAGCGGAATGGATC
66 CTCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
*
8053112 AATT
131 AACT
8053116 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTC
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTC
8053162 ATCCCTAGAT
Statistics
Matches: 416, Mismatches: 31, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
134 415 1.00
135 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (134 bp):
CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
CTCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
AACT
Found at i:8054088 original size:18 final size:17
Alignment explanation
Indices: 8054051--8054098 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
8054041 ATACAACCCA
*
8054051 AAATAA-AAAATCCATC
1 AAATAAGAAAATCCAGC
8054067 -AATAAGAAAATCGCAGC
1 AAATAAGAAAATC-CAGC
8054084 AAATAATGAAAATCC
1 AAATAA-GAAAATCC
8054099 TTTCTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 6 0.22
17 3 0.11
18 6 0.22
19 7 0.26
ACGTcount: A:0.58, C:0.17, G:0.08, T:0.17
Consensus pattern (17 bp):
AAATAAGAAAATCCAGC
Found at i:8062540 original size:93 final size:91
Alignment explanation
Indices: 8062432--8062812 Score: 222
Period size: 93 Copynumber: 4.2 Consensus size: 91
8062422 TGATTCAATC
*
8062432 TTCCCTGAGTGACAGCGGAATGGATCAACTCATCCAGATCTGATATTCCCTTCAGAAGA-AGCGG
1 TTCCCTGAGTGACAGCGGAATGAATCAACTCATCCAGATCTGATATTCCC-TCAGAAGACAGCGG
*
8062496 AACATATCACTCTTTTTCAAGATTTGATA
65 AACATATCACTC--TATCAAGATTTGATA
* * * *
8062525 TTCCCTGAGTGACAGCGGAAT-AAGTCTAC-CA--C-GAT-TCAATCTTCCC-C-GAGTGACAGC
1 TTCCCTGAGTGACAGCGGAATGAA-TCAACTCATCCAGATCT-GATATTCCCTCAGA-AGACAGC
*** * *
8062582 GGAATGGATCAACTC-ATCCAGATCTGATA
63 GGAACATATC-ACTCTATCAAGATTTGATA
* * ** * * * * *
8062611 TTCCCTTTAGACGA-AGCGGAACAAATC-ACTCTTTTTCAAGATTTGATATTCCCTGAG-TGACA
1 TTCCC-TGAG-TGACAGCGGAATGAATCAACTC---ATCCAGATCTGATATTCCCTCAGAAGACA
* * * ** *
8062673 GCGGAAC--A--AGTCTACCATGATTCAATC
61 GCGGAACATATCACTCTATCAAGATTTGATA
* * * *
8062700 TTCCCTGAGTGACAGCGAAATGGATCAACTCATCCAGATCTGATATTCCCTTCAAAAGA-AGCAG
1 TTCCCTGAGTGACAGCGGAATGAATCAACTCATCCAGATCTGATATTCCC-TCAGAAGACAGCGG
*
8062764 AACATATCACTCTTTTTCAAGATTTGATA
65 AACATATCACTC--TATCAAGATTTGATA
8062793 TTCCCTGAGTGACAGCGGAA
1 TTCCCTGAGTGACAGCGGAA
8062813 CAAGTCTACC
Statistics
Matches: 210, Mismatches: 49, Indels: 58
0.66 0.15 0.18
Matches are distributed among these distances:
86 36 0.17
87 27 0.13
88 32 0.15
89 31 0.15
90 1 0.00
91 4 0.02
92 3 0.01
93 74 0.35
94 1 0.00
95 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (91 bp):
TTCCCTGAGTGACAGCGGAATGAATCAACTCATCCAGATCTGATATTCCCTCAGAAGACAGCGGA
ACATATCACTCTATCAAGATTTGATA
Found at i:8062568 original size:134 final size:134
Alignment explanation
Indices: 8062328--8062948 Score: 976
Period size: 134 Copynumber: 4.6 Consensus size: 134
8062318 TAGTGAAGCA
* * * *
8062328 CATCCAGATCTGACATTCCCTTCAGAAGAAGCAGAACAAATCATTATTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATATT
* * *
8062393 CCCTAAGTCACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
8062458 AACT
131 AACT
*
8062462 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATATT
* *
8062527 CCCTGAGTGACAGCGGAATAAGTCTACCACGATTCAATCTTCCCCGAGTGACAGCGGAATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
8062592 AACT
131 AACT
* *
8062596 CATCCAGATCTGATATTCCCTTTAGACGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATATT
* *
8062661 CCCTGAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACAGCGAAATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
8062726 AACT
131 AACT
* * *
8062730 CATCCAGATCTGATATTCCCTTCAAAAGAAGCAGAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATATT
*
8062795 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGATAGCGGAATGGATC
66 CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
*
8062860 AATT
131 AACT
* * * ** * *
8062864 CATCCAGATCTGATATTCCCTTC-GAAAGAAGTGGAACAGATCACTC-ATCCCCAGATCTGATAT
1 CATCCAGATCTGATATTCCCTTCAG-AAGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATAT
*
8062927 TCCCTGAGTGACAGCGAAACAA
65 TCCCTGAGTGACAGCGGAACAA
8062949 ATCTCTTATC
Statistics
Matches: 450, Mismatches: 36, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
133 33 0.07
134 417 0.93
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (134 bp):
CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCACTCTTTTTCAAGATTTGATATT
CCCTGAGTGACAGCGGAACAAGTCTACCACGATTCAATCTTCCCTGAGTGACAGCGGAATGGATC
AACT
Found at i:8063832 original size:18 final size:17
Alignment explanation
Indices: 8063795--8063841 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
8063785 ATACAACCCA
*
8063795 AAATAA-AAAATCCATC
1 AAATAAGAAAATCCAGC
8063811 -AATAAGAAAATCGCAGC
1 AAATAAGAAAATC-CAGC
8063828 AAATAATGAAAATC
1 AAATAA-GAAAATC
8063842 ATTTCTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 5 0.19
16 6 0.23
17 3 0.12
18 5 0.19
19 7 0.27
ACGTcount: A:0.60, C:0.15, G:0.09, T:0.17
Consensus pattern (17 bp):
AAATAAGAAAATCCAGC
Found at i:8064982 original size:2 final size:2
Alignment explanation
Indices: 8064975--8065006 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8064965 TGCATAGTGC
8064975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8065007 GTTTGTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8072066 original size:79 final size:79
Alignment explanation
Indices: 8071931--8072090 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 79
8071921 TCCTTGGGGT
* * * * ** *
8071931 CATCAGTAAGTCTTCCGAGCATGATGCTTAAATCCTTTGGGCCATCTTAAGCCTTCACCGAAGAG
1 CATCAGTAAGCCTTCCGAGCATAATGATGAAATCCTCCGGGCCATCTTAAGCCTTCACCGAAGAA
8071996 TAGTGAAACAAATC
66 TAGTGAAACAAATC
* * * *
8072010 CATCAGTAAGCCTTCCGAGCATAATGATGAAGTCCTCCGGGCCATTTTAAGTCTTCACGGAAGAA
1 CATCAGTAAGCCTTCCGAGCATAATGATGAAATCCTCCGGGCCATCTTAAGCCTTCACCGAAGAA
* *
8072075 TAGTGAAGCACATC
66 TAGTGAAACAAATC
8072089 CA
1 CA
8072091 GATCTGATAT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (79 bp):
CATCAGTAAGCCTTCCGAGCATAATGATGAAATCCTCCGGGCCATCTTAAGCCTTCACCGAAGAA
TAGTGAAACAAATC
Found at i:8072313 original size:134 final size:134
Alignment explanation
Indices: 8072085--8072666 Score: 957
Period size: 134 Copynumber: 4.3 Consensus size: 134
8072075 TAGTGAAGCA
* *
8072085 CATCCAGATCTGATATACCTTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
* * * * * * *
8072150 CCCTGAGTAACAGCAGAACAAGTCTACCATGATTCAATCTTCCCTGAGTGACAACGAAATAGATC
66 CCCTAAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGACAGCGGAATGGATC
8072215 AACT
131 AACT
* * *
8072219 CATACAGATCTGATATTCGCTTCAGAAGAAGCGGAACATATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
*
8072284 CCCTGAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGACAGCGGAATGGATC
66 CCCTAAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGACAGCGGAATGGATC
8072349 AACT
131 AACT
8072353 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
* * *
8072418 CCCTAAGTGACAGTGGAACAAGTCTACCATGATTCATTCTTCCCTGAGTGACAGCGGAATGGATC
66 CCCTAAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGACAGCGGAATGGATC
8072483 AACT
131 AACT
* * * *
8072487 CATCCAGATCTGATATTCCCTTTAAAAGAAGCGGAACAAATCACTCTTTTTCAAGATTAGATATT
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
*
8072552 CCCTAAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGATAGCGGAATGGATC
66 CCCTAAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGACAGCGGAATGGATC
*
8072617 AATT
131 AACT
*
8072621 CATCCAGATCTGATATTCCCTTCAGAAGAAGCAGAACAGATCACTC
1 CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTC
8072667 ATCCCCTGAT
Statistics
Matches: 417, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
134 417 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (134 bp):
CATCCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAGATCACTCTTTTTCAAGATTTGATATT
CCCTAAGTGACAGCGGAACAAGTCTACCATGATTCAATCTTCCCTAAGTGACAGCGGAATGGATC
AACT
Found at i:8076919 original size:45 final size:45
Alignment explanation
Indices: 8076863--8077399 Score: 905
Period size: 45 Copynumber: 12.0 Consensus size: 45
8076853 ATAAAATTTC
8076863 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
8076908 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
*
8076953 TTACCAATATACTTACCATTTAACCCATAAGTTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
8076998 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
*
8077043 TTACCAATATACTTACCATTTAACCCATAAACTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
8077088 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
*
8077133 TTACCAATATACTTACCATTTAACCCATAAACTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
8077178 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
* **
8077223 TTACCAATATACTTACAATTTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
* ** * * *
8077268 TTACCAATATACTTACAATTTATTCCATAATCGCGTAAGCCTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
**
8077313 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
* * **
8077358 TTACTAATATACTTATCA-TTATTCCATAAGCTCGTAAGCTTA
1 TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTA
8077400 CTTGCATGGT
Statistics
Matches: 474, Mismatches: 18, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
44 24 0.05
45 450 0.95
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (45 bp):
TTACCAATATACTTACCATTTAACCCATAAGCTCGTAAGCTTATT
Found at i:8077245 original size:24 final size:24
Alignment explanation
Indices: 8077218--8077291 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
8077208 GCTCGTAAGC
8077218 TTATTTTACCAATATACTTACAAT
1 TTATTTTACCAATATACTTACAAT
**
8077242 TTA--TT-CC-ATA-AGCTCGTA-AGC
1 TTATTTTACCAATATA-CT--TACAAT
8077263 TTATTTTACCAATATACTTACAAT
1 TTATTTTACCAATATACTTACAAT
8077287 TTATT
1 TTATT
8077292 CCATAATCGC
Statistics
Matches: 37, Mismatches: 4, Indels: 18
0.63 0.07 0.31
Matches are distributed among these distances:
19 1 0.03
20 5 0.14
21 6 0.16
22 4 0.11
23 4 0.11
24 11 0.30
25 5 0.14
26 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.04, T:0.45
Consensus pattern (24 bp):
TTATTTTACCAATATACTTACAAT
Found at i:8077438 original size:7 final size:7
Alignment explanation
Indices: 8077426--8077465 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
8077416 TTATTAACTA
8077426 ATAAACC
1 ATAAACC
8077433 ATAAACC
1 ATAAACC
8077440 ATAAACC
1 ATAAACC
8077447 ATAAACC
1 ATAAACC
*
8077454 ATAATCC
1 ATAAACC
8077461 ATAAA
1 ATAAA
8077466 AAATAGCCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.57, C:0.25, G:0.00, T:0.17
Consensus pattern (7 bp):
ATAAACC
Found at i:8077640 original size:61 final size:61
Alignment explanation
Indices: 8077533--8077647 Score: 176
Period size: 61 Copynumber: 1.9 Consensus size: 61
8077523 ATATTGCTAA
* * * *
8077533 ACCTGCACTAAGCTTACACCATAGTTCTAATCCGGATATGACACATAAGGTCGTGCCCACT
1 ACCTACACTAAGCTTACACCATAGTGCTAATCCAGACATGACACATAAGGTCGTGCCCACT
* *
8077594 ACCTACACTAAGCTTACACTATAGTGCTAATCCAGACATGATACATAAGGTCGT
1 ACCTACACTAAGCTTACACCATAGTGCTAATCCAGACATGACACATAAGGTCGT
8077648 ATCCACCATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (61 bp):
ACCTACACTAAGCTTACACCATAGTGCTAATCCAGACATGACACATAAGGTCGTGCCCACT
Found at i:8080152 original size:45 final size:46
Alignment explanation
Indices: 8080086--8080193 Score: 159
Period size: 45 Copynumber: 2.4 Consensus size: 46
8080076 GGTGCACTAA
*
8080086 GAGTGTATCGATGCATAAAATGCATTCGAT-TTTTCA-AAATAGC-CT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAA-A-CTCT
*
8080131 GAGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACTCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACTCT
8080177 GAGTGCATCGATGCATA
1 GAGTGCATCGATGCATA
8080194 GTATGTGCAT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 29 0.51
46 25 0.44
47 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31
Consensus pattern (46 bp):
GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACTCT
Done.