Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 62
Found at i:8318903 original size:14 final size:14
Alignment explanation
Indices: 8318884--8318912 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8318874 TTAAAAACCA
8318884 ACAGTAATACCAAT
1 ACAGTAATACCAAT
8318898 ACAGTAATACCAAT
1 ACAGTAATACCAAT
8318912 A
1 A
8318913 AACTAGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (14 bp):
ACAGTAATACCAAT
Found at i:8319213 original size:21 final size:21
Alignment explanation
Indices: 8319189--8319228 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8319179 AACCTTGTTA
8319189 GTAAACAATTAACATAATCAT
1 GTAAACAATTAACATAATCAT
*
8319210 GTAAACATTTAACATAATC
1 GTAAACAATTAACATAATC
8319229 CTAAACAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (21 bp):
GTAAACAATTAACATAATCAT
Found at i:8323677 original size:28 final size:27
Alignment explanation
Indices: 8323620--8323677 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
8323610 TTTTTAATTT
* *
8323620 TTAAAAATAAAAATGAATAAATAGTTA
1 TTAAAAATAAAAATAAATAAATAGTAA
* * *
8323647 TTAAAAATTAAATTAAATTAAATTGTAA
1 TTAAAAATAAAAATAAA-TAAATAGTAA
8323675 TTA
1 TTA
8323678 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (27 bp):
TTAAAAATAAAAATAAATAAATAGTAA
Found at i:8324895 original size:21 final size:21
Alignment explanation
Indices: 8324869--8324908 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
8324859 GTTGGGAGCG
8324869 TAGGTGTATCGGTACACTCTC
1 TAGGTGTATCGGTACACTCTC
8324890 TAGGTGTATCGGTACACTC
1 TAGGTGTATCGGTACACTC
8324909 AGTGTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.33
Consensus pattern (21 bp):
TAGGTGTATCGGTACACTCTC
Found at i:8327251 original size:19 final size:20
Alignment explanation
Indices: 8327227--8327274 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8327217 AACGATTTTC
*
8327227 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
8327246 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
8327266 TTTTGAAAA
1 TTTTGAAAA
8327275 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:8328724 original size:21 final size:20
Alignment explanation
Indices: 8328683--8328765 Score: 121
Period size: 20 Copynumber: 4.1 Consensus size: 20
8328673 AATCAGATTG
*
8328683 CCCAGGGGCTACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
*
8328703 CCCATGGGGTACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
*
8328723 CCCAGGGGGAACAGATTCCCC
1 CCCAGGGGGTACAGATT-CCC
*
8328744 CCCAGGGGGTACCGATTCCC
1 CCCAGGGGGTACAGATTCCC
8328764 CC
1 CC
8328766 TTGTCTAACG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 38 0.68
21 18 0.32
ACGTcount: A:0.19, C:0.40, G:0.27, T:0.14
Consensus pattern (20 bp):
CCCAGGGGGTACAGATTCCC
Found at i:8328729 original size:40 final size:41
Alignment explanation
Indices: 8328683--8328765 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
8328673 AATCAGATTG
* *
8328683 CCCAGGGGCTACAGATT-CCCCCCATGGGGTACAGATTCCC
1 CCCAGGGGCAACAGATTCCCCCCCAGGGGGTACAGATTCCC
* *
8328723 CCCAGGGGGAACAGATTCCCCCCCAGGGGGTACCGATTCCC
1 CCCAGGGGCAACAGATTCCCCCCCAGGGGGTACAGATTCCC
8328764 CC
1 CC
8328766 TTGTCTAACG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
40 15 0.39
41 23 0.61
ACGTcount: A:0.19, C:0.40, G:0.27, T:0.14
Consensus pattern (41 bp):
CCCAGGGGCAACAGATTCCCCCCCAGGGGGTACAGATTCCC
Found at i:8330802 original size:13 final size:13
Alignment explanation
Indices: 8330783--8330822 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
8330773 CAATATAATC
8330783 AATTTTGAAAAACT
1 AATTTTGAAAAA-T
8330797 -ATTTTGAAAAAT
1 AATTTTGAAAAAT
8330809 AATGTTTGAAAAAT
1 AAT-TTTGAAAAAT
8330823 CATATTACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.04
13 13 0.54
14 10 0.42
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (13 bp):
AATTTTGAAAAAT
Found at i:8330881 original size:20 final size:21
Alignment explanation
Indices: 8330845--8330888 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
8330835 AGTTTTCATG
8330845 AAAAACAACATAATT-AAATC
1 AAAAACAACATAATTAAAATC
*
8330865 AAAAACAACA-ATTTTAAAATC
1 AAAAACAACATA-ATTAAAATC
8330886 AAA
1 AAA
8330889 TTATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 12 0.57
21 8 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (21 bp):
AAAAACAACATAATTAAAATC
Found at i:8331743 original size:34 final size:32
Alignment explanation
Indices: 8331681--8331750 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
8331671 ACCTTACAAC
* *
8331681 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
8331713 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
8331747 TCCC
1 TCCC
8331751 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:8332205 original size:22 final size:23
Alignment explanation
Indices: 8332174--8332216 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
8332164 ATGGATAGAC
8332174 TGCATGGTGCATCGATGCACTAG
1 TGCATGGTGCATCGATGCACTAG
*
8332197 TGCA-GGTGCATGGATGCACT
1 TGCATGGTGCATCGATGCACT
8332217 GCAGAGATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (23 bp):
TGCATGGTGCATCGATGCACTAG
Found at i:8332219 original size:42 final size:41
Alignment explanation
Indices: 8332160--8332258 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 41
8332150 CGGTGTTTGA
8332160 GTGCATGGATAG-ACTGCATG-G-TGCATCGATGCACTAGTGCA-G
1 GTGCATGGAT-GCACTGCA-GAGATGCATCGATGCAC---TGCAGG
*
8332202 GTGCATGGATGCACTGCAGAGATGCATGGATGCACTGCAGGG
1 GTGCATGGATGCACTGCAGAGATGCATCGATGCACTGCA-GG
8332244 GTGCATGGATGCACT
1 GTGCATGGATGCACT
8332259 TTAACACCTT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
40 4 0.08
41 2 0.04
42 33 0.65
43 12 0.24
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.22
Consensus pattern (41 bp):
GTGCATGGATGCACTGCAGAGATGCATCGATGCACTGCAGG
Found at i:8332229 original size:21 final size:21
Alignment explanation
Indices: 8332203--8332258 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
8332193 CTAGTGCAGG
8332203 TGCATGGATGCACTGCAGAGA
1 TGCATGGATGCACTGCAGAGA
* *
8332224 TGCATGGATGCACTGCAGGGG
1 TGCATGGATGCACTGCAGAGA
8332245 TGCATGGATGCACT
1 TGCATGGATGCACT
8332259 TTAACACCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (21 bp):
TGCATGGATGCACTGCAGAGA
Found at i:8332359 original size:29 final size:29
Alignment explanation
Indices: 8332338--8332395 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
8332328 AAACTTTGAA
8332338 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
8332367 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
8332396 TGCCTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:8332385 original size:30 final size:30
Alignment explanation
Indices: 8332338--8332397 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
8332328 AAACTTTGAA
8332338 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
8332367 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
8332398 CCTAAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:8333692 original size:19 final size:20
Alignment explanation
Indices: 8333649--8333696 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8333639 TCTAAATCCT
*
8333649 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
8333669 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
8333688 TTTTCAAAA
1 TTTTCAAAA
8333697 GAAAATCGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:8334621 original size:34 final size:32
Alignment explanation
Indices: 8334559--8334628 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
8334549 ACCTTACAAC
* *
8334559 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
8334591 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
8334625 TCCC
1 TCCC
8334629 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:8335272 original size:30 final size:30
Alignment explanation
Indices: 8335225--8335283 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
8335215 AAGCTTTGAA
8335225 TAAATTCAATTAAGTCCAAAAA-CATTTTT
1 TAAATTCAATTAAGTCCAAAAACCATTTTT
8335254 TAAATTCAATTCAAGTCCAAAAACCATTTT
1 TAAATTCAATT-AAGTCCAAAAACCATTTT
8335284 GCCTTAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTT
Found at i:8335283 original size:29 final size:28
Alignment explanation
Indices: 8335225--8335283 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
8335215 AAGCTTTGAA
8335225 TAAATTCAATTAAGTCCAAAAACATTTTT
1 TAAATTCAATTAAGTCCAAAAACA-TTTT
8335254 TAAATTCAATTCAAGTCCAAAAACCATTTT
1 TAAATTCAATT-AAGTCCAAAAA-CATTTT
8335284 GCCTTAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.39
30 15 0.54
31 2 0.07
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (28 bp):
TAAATTCAATTAAGTCCAAAAACATTTT
Found at i:8343919 original size:23 final size:23
Alignment explanation
Indices: 8343885--8343934 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
8343875 GGAATCGATA
8343885 CCCC-TTGAAGGGGAACCGATTC
1 CCCCTTTGAAGGGGAACCGATTC
*
8343907 TCCCTTTGAAGGGGAACCGATTC
1 CCCCTTTGAAGGGGAACCGATTC
8343930 CCCCT
1 CCCCT
8343935 AGGGGAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.20, C:0.34, G:0.24, T:0.22
Consensus pattern (23 bp):
CCCCTTTGAAGGGGAACCGATTC
Found at i:8343940 original size:19 final size:20
Alignment explanation
Indices: 8343892--8343952 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
8343882 ATACCCCTTG
*
8343892 AAGGGGAACCGATTCTCCCTTT
1 AAGGGGAACCGATTC-CCC-CT
8343914 GAAGGGGAACCGATTCCCCCT
1 -AAGGGGAACCGATTCCCCCT
* *
8343935 -AGGGGAATCGATACCCCC
1 AAGGGGAACCGATTCCCCC
8343953 ATGGGGTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 16 0.46
21 1 0.03
22 3 0.09
23 15 0.43
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (20 bp):
AAGGGGAACCGATTCCCCCT
Found at i:8347806 original size:21 final size:21
Alignment explanation
Indices: 8347776--8347815 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8347766 ATTGGGAGCG
8347776 TAGGTGTATCGGTACACTCTC
1 TAGGTGTATCGGTACACTCTC
*
8347797 TAGGTTTATCGGTACACTC
1 TAGGTGTATCGGTACACTC
8347816 AATGTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (21 bp):
TAGGTGTATCGGTACACTCTC
Found at i:8348311 original size:22 final size:22
Alignment explanation
Indices: 8348258--8348336 Score: 88
Period size: 22 Copynumber: 3.5 Consensus size: 22
8348248 TTTCAACACC
* *
8348258 TATCAATACCTCTTATGAACGGG
1 TATCAATACC-CCTATGAATGGG
*
8348281 TA-CTGATACCCCTATGAATGGG
1 TATC-AATACCCCTATGAATGGG
* *
8348303 TATCAATACCCATATGAATAGG
1 TATCAATACCCCTATGAATGGG
8348325 TATCAATACCCC
1 TATCAATACCCC
8348337 ATAAAGGCTC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 39 0.83
23 8 0.17
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (22 bp):
TATCAATACCCCTATGAATGGG
Found at i:8349404 original size:13 final size:13
Alignment explanation
Indices: 8349386--8349413 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8349376 AAGAGAAGAA
8349386 AAAGTACTAGTTC
1 AAAGTACTAGTTC
8349399 AAAGTACTAGTTC
1 AAAGTACTAGTTC
8349412 AA
1 AA
8349414 TGCAACGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AAAGTACTAGTTC
Found at i:8349968 original size:17 final size:18
Alignment explanation
Indices: 8349933--8349968 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
8349923 TGAGGTGGAT
8349933 GAAGATGATGATGAACAA
1 GAAGATGATGATGAACAA
*
8349951 GAAGATGA-GATGATCAA
1 GAAGATGATGATGAACAA
8349968 G
1 G
8349969 CTCTTGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.47, C:0.06, G:0.31, T:0.17
Consensus pattern (18 bp):
GAAGATGATGATGAACAA
Found at i:8351821 original size:22 final size:22
Alignment explanation
Indices: 8351793--8351902 Score: 87
Period size: 22 Copynumber: 4.9 Consensus size: 22
8351783 AATATTAAGA
*
8351793 GGTACCGATACCCCTATGAATG
1 GGTATCGATACCCCTATGAATG
* * * *
8351815 GGTACCGATACCCGTATCAATACC
1 GGTATCGATACCCCTATGAAT--G
** * * *
8351839 CCTATCAATACCTCTTATGAACG
1 GGTATCGATACC-CCTATGAATG
8351862 GGTATCGATACCCCTATGAATG
1 GGTATCGATACCCCTATGAATG
*
8351884 GGTATCAATACCCC-ATGAA
1 GGTATCGATACCCCTATGAA
8351903 GGCTCAAATT
Statistics
Matches: 68, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
21 5 0.07
22 40 0.59
23 9 0.13
24 8 0.12
25 6 0.09
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (22 bp):
GGTATCGATACCCCTATGAATG
Found at i:8352073 original size:21 final size:21
Alignment explanation
Indices: 8352046--8352101 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
8352036 GTTTTGCAGA
8352046 AAAATAATCCCCAAACGGCTC
1 AAAATAATCCCCAAACGGCTC
*
8352067 CAAATAATCCCCAAACGGCTC
1 AAAATAATCCCCAAACGGCTC
*
8352088 AAAATCATCCCCAA
1 AAAATAATCCCCAA
8352102 CAGTTAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.43, C:0.36, G:0.07, T:0.14
Consensus pattern (21 bp):
AAAATAATCCCCAAACGGCTC
Found at i:8352368 original size:33 final size:33
Alignment explanation
Indices: 8352326--8352395 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
8352316 TTTTGTAATG
* *
8352326 GGGAAAGGTTCTAACTGATCCCGTGAAAAGCTA
1 GGGAAAGGTTCTAACTGAGCCCGTGAAAAACTA
** *
8352359 GGGAAAGGTTCTAGTTTAGCCCGTGAAAAACTA
1 GGGAAAGGTTCTAACTGAGCCCGTGAAAAACTA
8352392 GGGA
1 GGGA
8352396 GTTTATAAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (33 bp):
GGGAAAGGTTCTAACTGAGCCCGTGAAAAACTA
Found at i:8353344 original size:233 final size:224
Alignment explanation
Indices: 8352937--8353369 Score: 514
Period size: 233 Copynumber: 1.9 Consensus size: 224
8352927 CACGTATAAG
* * *
8352937 TTAACTTAAAAATCTAGATCTCATGTTTCCTTATTTTTCATATTTTCAAAACAATTTTAATAAAA
1 TTAACTTAAAAATCTAGATATCATGTTTCCTTATTTTTCAAAATTTCAAAACAATTTTAATAAAA
* * * * * ** ***
8353002 TTACTGGAAACATCTTTTTTATATTTTCGCTCATCTTTGTTTTCATTTTCTAATTTTTTTTTTTC
66 TTACTGAAAACATCTTTTTCATAATTTCACTCATCTTTGTTTTCATTTTCGAATAATCAGTTTTC
* * * *
8353067 AATTTTATAACCAAACATTTTTTCTTCAAGGTTTGTTATTTTCTAAGAAAA-GAAAAATAAATTA
131 AATTATACAACCAAACATGTTTTCTTCAAGCTTTGTTATTTTCTAA-AAAATGAAAAATAAATTA
8353131 TATTTTTCCTTATTCTTCAACGTTTTTAAA
195 TATTTTTCCTTATTCTTCAACGTTTTTAAA
*
8353161 TTAACTTAAAAATCTAGATATTATGTTTCCTTATTTTTTCAAAATTTCAAAACAATTTTAATGAA
1 TTAACTTAAAAATCTAGATATCATGTTTCCTTA-TTTTTCAAAATTTCAAAACAATTTTAAT-AA
8353226 AA-TACTGAAAACATCTTTTTCATAATTTCACATTTTCACTTACTTTTGTTTTCATTTTCGAGA-
64 AATTACTGAAAACATCTTTTTCATAATTTCAC----TCA--T-C-TTTGTTTTCATTTTCGA-AT
* * * *
8353289 AATCAGTTTTCAATTATACAACCAAACATGTTTTCTTTAA-CTTTTTCTTTTTTCTAAAAAATTA
120 AATCAGTTTTCAATTATACAACCAAACATGTTTTCTTCAAGCTTTGT-TATTTTCTAAAAAATGA
*
8353353 AAAATAACTTATATTTT
184 AAAATAAATTATATTTT
8353370 CTAAAAGCAA
Statistics
Matches: 173, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
224 31 0.18
225 51 0.29
226 4 0.02
229 3 0.02
231 1 0.01
232 9 0.05
233 73 0.42
234 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (224 bp):
TTAACTTAAAAATCTAGATATCATGTTTCCTTATTTTTCAAAATTTCAAAACAATTTTAATAAAA
TTACTGAAAACATCTTTTTCATAATTTCACTCATCTTTGTTTTCATTTTCGAATAATCAGTTTTC
AATTATACAACCAAACATGTTTTCTTCAAGCTTTGTTATTTTCTAAAAAATGAAAAATAAATTAT
ATTTTTCCTTATTCTTCAACGTTTTTAAA
Found at i:8353999 original size:2 final size:2
Alignment explanation
Indices: 8353992--8354047 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
8353982 ATTGGATAGA
8353992 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8354034 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
8354048 CTAAATCTAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8354345 original size:2 final size:2
Alignment explanation
Indices: 8354333--8354372 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
8354323 ATACTTCTAC
8354333 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8354373 TAATTATTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8356078 original size:60 final size:60
Alignment explanation
Indices: 8355980--8356165 Score: 246
Period size: 60 Copynumber: 3.1 Consensus size: 60
8355970 TTGCATCACG
* * * * *
8355980 TCCCCAGACTATAACTCTCATTTTAAATTGGTCCTTAAACTTTTGAATATTCCAATTTCA
1 TCCCCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTCA
* * *
8356040 TCCCCAAATTATGACTCTCATTCTAAATTAGTCTTTAAACTTTTGAAAATTCTAATTTCA
1 TCCCCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTCA
** * * * *
8356100 TCCATAAGCTATGACCCTCTTTCTAAATTAGTCCCTAAACTTTTGAATATTCTAATTTCA
1 TCCCCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTCA
8356160 TCCCCA
1 TCCCCA
8356166 TATTCATTGA
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 107 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.40
Consensus pattern (60 bp):
TCCCCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTCA
Found at i:8356163 original size:29 final size:29
Alignment explanation
Indices: 8356015--8356163 Score: 72
Period size: 29 Copynumber: 5.0 Consensus size: 29
8356005 AATTGGTCCT
*
8356015 TAAACTTTTGAATATTCCAATTTCATCCC
1 TAAACTTTTGAATATTCTAATTTCATCCC
* * * * **
8356044 CAAA-TTATGACTCTCATTCTAAATT-AGTCTT
1 TAAACTTTTGA--AT-ATTCTAATTTCA-TCCC
* *
8356075 TAAACTTTTGAAAATTCTAATTTCATCCA
1 TAAACTTTTGAATATTCTAATTTCATCCC
* * * * *
8356104 TAAGC-TATGACCCTCTTTCTAAATT-AGTCCC
1 TAAACTTTTGA--AT-ATTCTAATTTCA-TCCC
8356135 TAAACTTTTGAATATTCTAATTTCATCCC
1 TAAACTTTTGAATATTCTAATTTCATCCC
8356164 CATATTCATT
Statistics
Matches: 82, Mismatches: 26, Indels: 24
0.62 0.20 0.18
Matches are distributed among these distances:
28 9 0.11
29 30 0.37
30 6 0.07
31 28 0.34
32 9 0.11
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (29 bp):
TAAACTTTTGAATATTCTAATTTCATCCC
Found at i:8356379 original size:60 final size:59
Alignment explanation
Indices: 8356285--8356460 Score: 194
Period size: 60 Copynumber: 2.9 Consensus size: 59
8356275 ATGATACATG
* * *
8356285 TATAGTTTGGGATGAAATT-AGAATGCTCAAAAAGTTTGGGGACCAATTTAGAATGA-AGG
1 TATAGTTTGGGATGAAATTGA-AATGTTC-AAAAGTTTGGGGACCAATTTAAAATGATAGC
* * *
8356344 TCATAGTTTGGGAATGAAATTGAAATGTTCAAAAGTTTGAGGACTAATTCAAAATGATAGC
1 T-ATAGTTTGGG-ATGAAATTGAAATGTTCAAAAGTTTGGGGACCAATTTAAAATGATAGC
* * * **
8356405 TATAGTTTAAGGATGAAATTGAAATATTTAAAAGTTCAGGGACCAATTTAAAATGA
1 TATAGTTT-GGGATGAAATTGAAATGTTCAAAAGTTTGGGGACCAATTTAAAATGA
8356461 GTCATACTTT
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
59 1 0.01
60 77 0.79
61 19 0.19
62 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (59 bp):
TATAGTTTGGGATGAAATTGAAATGTTCAAAAGTTTGGGGACCAATTTAAAATGATAGC
Found at i:8361683 original size:24 final size:25
Alignment explanation
Indices: 8361651--8361708 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 25
8361641 ATCAAAACAT
* *
8361651 AAATGAGTTACGAAAGATT-AAAGA
1 AAATGAGTTAAGAAAGATTAAAAAA
8361675 AAATGAGTTAAGAAAGATTAAAAAA
1 AAATGAGTTAAGAAAGATTAAAAAA
8361700 AAATGAGTT
1 AAATGAGTT
8361709 TCAAAGTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 18 0.58
25 13 0.42
ACGTcount: A:0.57, C:0.02, G:0.19, T:0.22
Consensus pattern (25 bp):
AAATGAGTTAAGAAAGATTAAAAAA
Found at i:8363318 original size:18 final size:18
Alignment explanation
Indices: 8363276--8363318 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
8363266 TGAATATTGT
* *
8363276 TATATGAAGCACTATGCG
1 TATATGTAGCACTATGCA
8363294 TATATGTAGCACTATGCA
1 TATATGTAGCACTATGCA
8363312 TATATGT
1 TATATGT
8363319 TCTATGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (18 bp):
TATATGTAGCACTATGCA
Found at i:8363823 original size:23 final size:23
Alignment explanation
Indices: 8363797--8363849 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
8363787 GGTACTTCGA
8363797 TGCATTTCAACGCAGCACTTAGG
1 TGCATTTCAACGCAGCACTTAGG
* * ** *
8363820 TGCAATTCTACGTGGCACTTCGG
1 TGCATTTCAACGCAGCACTTAGG
8363843 TGCATTT
1 TGCATTT
8363850 ATATGAGCTG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (23 bp):
TGCATTTCAACGCAGCACTTAGG
Found at i:8371791 original size:32 final size:32
Alignment explanation
Indices: 8371755--8371821 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
8371745 ACTACCAACA
8371755 AGGCTAATTGGTATATAGTCTTCAATACACTC
1 AGGCTAATTGGTATATAGTCTTCAATACACTC
*
8371787 AGGCTAATTGGTCTATAGTCTTCAATACACTC
1 AGGCTAATTGGTATATAGTCTTCAATACACTC
8371819 AGG
1 AGG
8371822 ATTTATTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (32 bp):
AGGCTAATTGGTATATAGTCTTCAATACACTC
Found at i:8372135 original size:27 final size:27
Alignment explanation
Indices: 8372093--8372187 Score: 167
Period size: 27 Copynumber: 3.6 Consensus size: 27
8372083 ATGTAGGAAT
8372093 TATAGAG--ATGATTTGTTACCATTCC
1 TATAGAGATATGATTTGTTACCATTCC
8372118 TATAGAGATATGATTTGTTACCATTCC
1 TATAGAGATATGATTTGTTACCATTCC
*
8372145 TATAGAGATATGTTTTGTTACCATTCC
1 TATAGAGATATGATTTGTTACCATTCC
8372172 TATAGAGATATGATTT
1 TATAGAGATATGATTT
8372188 TGTAAATAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
25 7 0.11
27 59 0.89
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (27 bp):
TATAGAGATATGATTTGTTACCATTCC
Found at i:8376204 original size:27 final size:27
Alignment explanation
Indices: 8376166--8376221 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8376156 GTTCCTGAAG
8376166 TTGTTACCATTCCTATAGAGATATGAT
1 TTGTTACCATTCCTATAGAGATATGAT
8376193 TTGTTACCATTCCTATAGAGATATGAT
1 TTGTTACCATTCCTATAGAGATATGAT
8376220 TT
1 TT
8376222 TGTAAATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (27 bp):
TTGTTACCATTCCTATAGAGATATGAT
Found at i:8391672 original size:22 final size:23
Alignment explanation
Indices: 8391633--8391679 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
8391623 AACCCTAAAT
8391633 AAGCCCAAAAATCATATCTGCTA
1 AAGCCCAAAAATCATATCTGCTA
* * *
8391656 AAGCCC-ATAATCGTATCTTCTA
1 AAGCCCAAAAATCATATCTGCTA
8391678 AA
1 AA
8391680 CTCGCAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (23 bp):
AAGCCCAAAAATCATATCTGCTA
Found at i:8399372 original size:21 final size:21
Alignment explanation
Indices: 8399330--8399372 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8399320 TTTATGGGCT
* *
8399330 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
8399351 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
8399372 A
1 A
8399373 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:8403194 original size:21 final size:21
Alignment explanation
Indices: 8403152--8403194 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8403142 TTTCTGGGCT
* * *
8403152 AGGGGAATTGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
8403173 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
8403194 A
1 A
8403195 CGAATATGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:8403923 original size:23 final size:23
Alignment explanation
Indices: 8403879--8403923 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8403869 ATTATTATAT
*
8403879 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
8403902 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
8403924 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:8409670 original size:21 final size:21
Alignment explanation
Indices: 8409628--8409670 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8409618 TTTCTGGGCT
* * *
8409628 AGGGGAATTGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
8409649 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
8409670 A
1 A
8409671 CGAATATGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:8410262 original size:25 final size:25
Alignment explanation
Indices: 8410197--8410265 Score: 129
Period size: 25 Copynumber: 2.8 Consensus size: 25
8410187 GGGTAGAGGG
*
8410197 TCTACGCGGTCCTTCAGGACAATAT
1 TCTACGCGGTCCTTCGGGACAATAT
8410222 TCTACGCGGTCCTTCGGGACAATAT
1 TCTACGCGGTCCTTCGGGACAATAT
8410247 TCTACGCGGTCCTTCGGGA
1 TCTACGCGGTCCTTCGGGA
8410266 TATATATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.28
Consensus pattern (25 bp):
TCTACGCGGTCCTTCGGGACAATAT
Found at i:8410424 original size:23 final size:23
Alignment explanation
Indices: 8410380--8410424 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8410370 ATTATTATAT
*
8410380 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
8410403 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
8410425 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:8416555 original size:20 final size:20
Alignment explanation
Indices: 8416530--8416567 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8416520 GAATGCTAGA
*
8416530 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
8416550 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
8416568 TATAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:8417095 original size:25 final size:25
Alignment explanation
Indices: 8417030--8417098 Score: 129
Period size: 25 Copynumber: 2.8 Consensus size: 25
8417020 GGGTAGAGGG
*
8417030 TCTACGCGGTCCTTCAGGACAATAT
1 TCTACGCGGTCCTTCGGGACAATAT
8417055 TCTACGCGGTCCTTCGGGACAATAT
1 TCTACGCGGTCCTTCGGGACAATAT
8417080 TCTACGCGGTCCTTCGGGA
1 TCTACGCGGTCCTTCGGGA
8417099 TATATATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.28
Consensus pattern (25 bp):
TCTACGCGGTCCTTCGGGACAATAT
Found at i:8417257 original size:23 final size:23
Alignment explanation
Indices: 8417213--8417257 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8417203 ATTATTATAT
*
8417213 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
8417236 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
8417258 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:8421396 original size:21 final size:21
Alignment explanation
Indices: 8421370--8421423 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
8421360 TCAGATGAAC
*
8421370 AGTATCGATACTAATGCAATT
1 AGTATCGATACTAATACAATT
*
8421391 AGTATCGATACTAATATAATT
1 AGTATCGATACTAATACAATT
8421412 AGTATCGATACT
1 AGTATCGATACT
8421424 GATGGGGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (21 bp):
AGTATCGATACTAATACAATT
Found at i:8421583 original size:94 final size:95
Alignment explanation
Indices: 8421451--8421623 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 95
8421441 ATGAGGAAGA
* * * * *
8421451 TATCGATACCATTGATTCCAGAATGCATAAATGGTATCGATACTGTAATGGAGTATCGGTACCAT
1 TATCGATACCATGGATTCCAGAATGCAGAAATGGTATCGATACTGAAAAGGAGTATCGGTACCAC
8421516 AGTATAGAAGTATCAGTAGTAGGAGAAAAG
66 AGTATAGAAGTATCAGTAGTAGGAGAAAAG
* *
8421546 TATCGATACCATGGA-TCTAGAATGTAGAAATGGTATCGATACTGAAAAGGAGTATCGGTACCAC
1 TATCGATACCATGGATTCCAGAATGCAGAAATGGTATCGATACTGAAAAGGAGTATCGGTACCAC
8421610 AGTATAGAAGTATC
66 AGTATAGAAGTATC
8421624 GATACCATGG
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
94 57 0.80
95 14 0.20
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (95 bp):
TATCGATACCATGGATTCCAGAATGCAGAAATGGTATCGATACTGAAAAGGAGTATCGGTACCAC
AGTATAGAAGTATCAGTAGTAGGAGAAAAG
Found at i:8422040 original size:46 final size:50
Alignment explanation
Indices: 8421966--8422285 Score: 344
Period size: 54 Copynumber: 6.2 Consensus size: 50
8421956 GTAATTTCTA
*
8421966 TATTGGCACTATGTGTGCAACCTGAGAAATTCATAAT-G-A-G-TTTCCG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAGTATGATTTCCG
* * *
8422012 TATTGGCACTATGTGCGCAATCTAAGAAATTCATAATGAGTATGAATTTTCG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAAT-AGTATG-ATTTCCG
*
8422064 TATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAAT-AG--TATG-ATTTCCG
*
8422118 TATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAAT-AG--TATG-ATTTCCG
*
8422172 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATT-CG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAAT-AG--TATGATTTCCG
*** * *
8422224 TATTGGCACTATGTGTATGACTTAAGAAATTCATAATAAGTTTATAAATTTCCG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAAT-AG--TAT-GATTTCCG
8422278 TATTGGCA
1 TATTGGCA
8422286 ATGGGAGTGC
Statistics
Matches: 247, Mismatches: 17, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
46 34 0.14
48 1 0.00
49 1 0.00
50 1 0.00
52 84 0.34
53 6 0.02
54 120 0.49
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (50 bp):
TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAGTATGATTTCCG
Found at i:8422120 original size:54 final size:54
Alignment explanation
Indices: 8422001--8422285 Score: 434
Period size: 54 Copynumber: 5.4 Consensus size: 54
8421991 GAAATTCATA
* * *
8422001 ATGAGTTTCCGTATTGGCACTATGTGCGCAATCTAAGAAATTCATAATGAG--T
1 ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
* *
8422053 ATGAATTTTCGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
1 ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
*
8422107 ATGAATTTCCGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
1 ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
8422161 ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
1 ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
*** * *
8422215 ATGAA-TT-CGTATTGGCACTATGTGTATGACTTAAGAAATTCATAATAAGTTT
1 ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
*
8422267 ATAAATTTCCGTATTGGCA
1 ATGAATTTCCGTATTGGCA
8422286 ATGGGAGTGC
Statistics
Matches: 216, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
52 90 0.42
53 4 0.02
54 122 0.56
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (54 bp):
ATGAATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTT
Found at i:8422226 original size:106 final size:106
Alignment explanation
Indices: 8421966--8422285 Score: 449
Period size: 106 Copynumber: 3.1 Consensus size: 106
8421956 GTAATTTCTA
* *
8421966 TATTGGCACTATGTGTGCAACCTGAGAAATTCATAATGAG--T-T---TCCGTATTGGCACTATG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTCGTATTGGCACTATG
* * *
8422025 TGCGCAATCTAAGAAATTCATAATGAG--TATGAATTTTCG
66 TGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
* *
8422064 TATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGACACTA
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAA-TT-CGTATTGGCACTA
8422129 TGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
64 TGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
8422172 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTCGTATTGGCACTATG
1 TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTCGTATTGGCACTATG
*** * * *
8422237 TGTATGACTTAAGAAATTCATAATAAGTTTATAAATTTCCG
66 TGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
8422278 TATTGGCA
1 TATTGGCA
8422286 ATGGGAGTGC
Statistics
Matches: 197, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
98 38 0.19
100 1 0.01
101 1 0.01
105 1 0.01
106 96 0.49
107 2 0.01
108 58 0.29
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (106 bp):
TATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTCGTATTGGCACTATG
TGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCG
Found at i:8422226 original size:160 final size:151
Alignment explanation
Indices: 8421966--8422282 Score: 429
Period size: 160 Copynumber: 2.0 Consensus size: 151
8421956 GTAATTTCTA
* *
8421966 TATTGGCACTATGTGTGCAACCTGAGAAATTCATAATGAGTTTCCGTATTGGCACTATGTGCGCA
1 TATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTCCGTATTGGCACTATGTGCGCA
* *
8422031 ATCTAAGAAATTCATAATGAGTATGAATTTTCGTATTGACACTATGTGTGCAACCTAAGAAATTC
66 ACCTAAGAAATTCATAATGAGTATGAA-TTTCGTATTGACACTATGTGTACAACCTAAGAAATTC
* *
8422096 ATAATGAGTTTATGAATTTCCG
130 ATAATAAGTTTATAAATTTCCG
8422118 TATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTA
1 TATTGACACTATGTGTGCAACCTAAGAAATTCATAAT--G---A-G--TTTCCGTATTGGCACTA
* * ** *
8422183 TGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAA-TTCGTATTGGCACTATGTGTATGACTT
58 TGTGCGCAACCTAAGAAATTCATAATGAG--TATGAATTTCGTATTGACACTATGTGTACAACCT
8422247 AAGAAATTCATAATAAGTTTATAAATTTCCG
121 AAGAAATTCATAATAAGTTTATAAATTTCCG
8422278 TATTG
1 TATTG
8422283 GCAATGGGAG
Statistics
Matches: 144, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
152 35 0.24
154 1 0.01
157 1 0.01
158 1 0.01
160 100 0.69
162 6 0.04
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (151 bp):
TATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTCCGTATTGGCACTATGTGCGCA
ACCTAAGAAATTCATAATGAGTATGAATTTCGTATTGACACTATGTGTACAACCTAAGAAATTCA
TAATAAGTTTATAAATTTCCG
Found at i:8422320 original size:106 final size:107
Alignment explanation
Indices: 8422007--8422342 Score: 349
Period size: 106 Copynumber: 3.1 Consensus size: 107
8421997 CATAATGAGT
** * * * * *
8422007 TTCCGTATTGGCACTATGTGCGCAATCTAAGAAATTCATAATGAG--TATGAATTTTCGTATTGA
1 TTCCGTATTGGCACTATGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGG
* * * *
8422070 CACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAA
66 CAATAGGAGTGCAACCTAAGAAATTCATAATAAGTTTATGAA
* * * *
8422112 TTTCCGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTG
1 -TTCCGTATTGGCACTATGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTG
* * * *
8422177 GCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAA
65 GCAATAGGAGTGCAACCTAAGAAATTCATAATAAGTTTATGAA
** *
8422220 TT-CGTATTGGCACTATGTGTATGACTTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGG
1 TTCCGTATTGGCACTATGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGG
* ** * * *
8422284 CAATGGGAGTGCAAACC-ACTTAAATT-GTAGTAAGTTTGTGAA
66 CAATAGGAGTGC-AACCTA-AGAAATTCATAATAAGTTTATGAA
8422326 TTACCGTATTGGCACTA
1 TT-CCGTATTGGCACTA
8422343 CAGGTGCAAA
Statistics
Matches: 202, Mismatches: 22, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
106 120 0.59
107 11 0.05
108 71 0.35
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (107 bp):
TTCCGTATTGGCACTATGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGG
CAATAGGAGTGCAACCTAAGAAATTCATAATAAGTTTATGAA
Found at i:8422335 original size:160 final size:159
Alignment explanation
Indices: 8422009--8422342 Score: 413
Period size: 160 Copynumber: 2.1 Consensus size: 159
8421999 TAATGAGTTT
*
8422009 CCGTATTGGCACTATGTGCGCAATCTAAGAAATTCATAATGAGTATGAATTTTCGTATTGACACT
1 CCGTATTGGCACTATGTGCGCAACCTAAGAAATTCATAATGAGTATGAA-TTTCGTATTGACACT
* * * * * *
8422074 ATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGACACTATGTGTGCAAC
65 ATGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGACAATAGGAGTGCAAC
* *
8422139 CTAAGAAATTCATAATGAGTTTATGAATTT
130 CTAAGAAATTCATAATAAGTTTATGAATTA
* *
8422169 CCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAA-TTCGTATTGGCAC
1 CCGTATTGGCACTATGTGCGCAACCTAAGAAATTCATAATGAG--TATGAATTTCGTATTGACAC
** * * *
8422233 TATGTGTATGACTTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGGCAATGGGAGTGCAA
64 TATGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGACAATAGGAGTGC-A
** * * *
8422298 ACC-ACTTAAATT-GTAGTAAGTTTGTGAATTA
128 ACCTA-AGAAATTCATAATAAGTTTATGAATTA
8422329 CCGTATTGGCACTA
1 CCGTATTGGCACTA
8422343 CAGGTGCAAA
Statistics
Matches: 149, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
160 134 0.90
161 9 0.06
162 6 0.04
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (159 bp):
CCGTATTGGCACTATGTGCGCAACCTAAGAAATTCATAATGAGTATGAATTTCGTATTGACACTA
TGTGTACAACCTAAGAAATTCATAATAAGTTTATAAATTTCCGTATTGACAATAGGAGTGCAACC
TAAGAAATTCATAATAAGTTTATGAATTA
Found at i:8425107 original size:13 final size:13
Alignment explanation
Indices: 8425091--8425121 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8425081 TCCAGAGTCC
*
8425091 TCTTCTTCTTTCT
1 TCTTCTTCCTTCT
8425104 TCTTCTTCCTTCT
1 TCTTCTTCCTTCT
8425117 TCTTC
1 TCTTC
8425122 ATACGTGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (13 bp):
TCTTCTTCCTTCT
Found at i:8425121 original size:10 final size:10
Alignment explanation
Indices: 8425092--8425121 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8425082 CCAGAGTCCT
*
8425092 CTTCTTCTTT
1 CTTCTTCTTC
8425102 CTTCTTCTTC
1 CTTCTTCTTC
8425112 CTTCTTCTTC
1 CTTCTTCTTC
8425122 ATACGTGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (10 bp):
CTTCTTCTTC
Found at i:8425604 original size:21 final size:21
Alignment explanation
Indices: 8425562--8425604 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8425552 TTTCTGGGCT
* *
8425562 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
8425583 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
8425604 A
1 A
8425605 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:8426307 original size:23 final size:23
Alignment explanation
Indices: 8426281--8426339 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
8426271 TAACACTACA
8426281 GTGCAATTCTACGCGGCACTCCG
1 GTGCAATTCTACGCGGCACTCCG
* *
8426304 GTGCAATTCTACGTGGCACTTCG
1 GTGCAATTCTACGCGGCACTCCG
*
8426327 GTGCAATTATACG
1 GTGCAATTCTACG
8426340 AGCTGTGGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.27
Consensus pattern (23 bp):
GTGCAATTCTACGCGGCACTCCG
Found at i:8426699 original size:16 final size:16
Alignment explanation
Indices: 8426673--8426710 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
8426663 CAACTATCAT
8426673 ATCAG-AAGCAAATTA
1 ATCAGTAAGCAAATTA
8426688 ATCAGTAAGCAAATTA
1 ATCAGTAAGCAAATTA
8426704 ATCAGTA
1 ATCAGTA
8426711 GGTCATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.24
Consensus pattern (16 bp):
ATCAGTAAGCAAATTA
Found at i:8432030 original size:74 final size:75
Alignment explanation
Indices: 8431925--8432088 Score: 197
Period size: 74 Copynumber: 2.2 Consensus size: 75
8431915 TATGAGGAAG
* * * *
8431925 GTATCGATACCGTTGATTCCAGAATGCAGAAATGGCATCAATAATGTAA-TGGAGTATCGATACC
1 GTATCGATACCATGGATTCCAGAATGCAGAAATGGCATCAATAATGAAAGT-GAGTAACGATACC
* *
8431989 ATAGTATAGAA
65 ACAATATAGAA
* * * * *
8432000 GTATCGATACCATGGA-TCCAGAATGTAGAAATGGTATCGATACTGAAAGTGAGTAACGGTACCA
1 GTATCGATACCATGGATTCCAGAATGCAGAAATGGCATCAATAATGAAAGTGAGTAACGATACCA
8432064 CAATATAGAA
66 CAATATAGAA
*
8432074 GTATCGATATCATGG
1 GTATCGATACCATGG
8432089 TAGGGTATCG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
74 61 0.80
75 15 0.20
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (75 bp):
GTATCGATACCATGGATTCCAGAATGCAGAAATGGCATCAATAATGAAAGTGAGTAACGATACCA
CAATATAGAA
Found at i:8432481 original size:54 final size:54
Alignment explanation
Indices: 8432412--8432643 Score: 302
Period size: 54 Copynumber: 4.3 Consensus size: 54
8432402 TATGTATTGT
*
8432412 AATTTCCGTATTGGCGCTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG
** * *
8432466 AATTTTTGTATTGGCGCTATGTGTGCAACCTAAGAAATTTATAATGAGTTTATG
1 AATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG
* * * * * * *
8432520 AATTTCCATATTGCCACTATATGTGCATCCTAAGAAATTCGTATTGAGTTTAAG
1 AATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG
* * * * * *
8432574 AATTACCGTATTGGCATTATGTGTGCAACTTAAGAAATTTATAATAAGTTTATA
1 AATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG
8432628 AATTTCCGTATTGGCA
1 AATTTCCGTATTGGCA
8432644 ATGGGTGTGC
Statistics
Matches: 150, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 150 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (54 bp):
AATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATG
Found at i:8434800 original size:91 final size:91
Alignment explanation
Indices: 8434654--8434819 Score: 278
Period size: 91 Copynumber: 1.8 Consensus size: 91
8434644 TGATGGAAAC
* *
8434654 GAGCTAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTC
1 GAGCTAAGATTGAAAAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTAGATGAGTTCTTCTC
8434719 ATTATGAACTCTCTATTGGAAACATT
66 ATTATGAACTCTCTATTGGAAACATT
* * * *
8434745 GAGCTAAGGTTGAAAAAGTTCTTCTCATTATTAACTTCTTCTCCCTCGTTAGATGAGTTCTTCTT
1 GAGCTAAGATTGAAAAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTAGATGAGTTCTTCTC
8434810 ATTATGAACT
66 ATTATGAACT
8434820 TTCCACTGGA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 69 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (91 bp):
GAGCTAAGATTGAAAAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTAGATGAGTTCTTCTC
ATTATGAACTCTCTATTGGAAACATT
Found at i:8435980 original size:50 final size:50
Alignment explanation
Indices: 8435919--8436032 Score: 187
Period size: 50 Copynumber: 2.3 Consensus size: 50
8435909 AGAACCCCCC
*
8435919 GAAAA-TCAGACTTAGCTTCTTTAAAAATTAATCATGTCAAGAAACCTTT
1 GAAAAGTCAGACTTAGCTTCTTTAAAAATTAATCATGTCAAGAAACCTAT
* *
8435968 GAAAAGTCAGACTTAGTTTCTTTAAAAATTCATCATGTCAAGAAACCTAT
1 GAAAAGTCAGACTTAGCTTCTTTAAAAATTAATCATGTCAAGAAACCTAT
8436018 GAAAAG-CAGACTTAG
1 GAAAAGTCAGACTTAG
8436033 TGTCTTTGAA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
49 14 0.23
50 47 0.77
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (50 bp):
GAAAAGTCAGACTTAGCTTCTTTAAAAATTAATCATGTCAAGAAACCTAT
Found at i:8436086 original size:55 final size:55
Alignment explanation
Indices: 8436005--8436418 Score: 476
Period size: 55 Copynumber: 7.6 Consensus size: 55
8435995 ATTCATCATG
* * * * *
8436005 TCAAGAAACCTATGAAAAGCAGACTTAGTGTCTTTGAAAGCTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* * * * * *
8436060 TCAAGAAATTTTTGAAAATCATACTTAGTTTCTTTAAAAACTCATTTGAAAATCG
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* * * *
8436115 TCAAGTAACTTCTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATAA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* * **
8436170 TCAAGAAACTTCTGAAAATC-GAATTTAGTTTCTTTG-AAACTCATTTGAAAATTG
1 TCAAGAAACTTCTGAAAATCAG-ACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* * * *
8436224 TCAAGAAACTTCTAAAAATTAGACTTAGTTTCTTTAAAAAATCATTT-AAAATCA
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* * * * * *
8436278 -CAAGGAAACTTTTGAAAATCAGACTTAATTTCTTTGAAAGCTTATTTGAAAATAA
1 TCAA-GAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* * *
8436333 TCAAGCAACTTCTGAAAATCGGACTTAGTTTCTTTGAAAACTCATTTAAAAATCG
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
* *
8436388 TCAATAAACTTCTAAAAATCAGACTTAGTTT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTT
8436419 TAATTGTCAA
Statistics
Matches: 299, Mismatches: 54, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
53 3 0.01
54 86 0.29
55 207 0.69
56 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (55 bp):
TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCA
Found at i:8436254 original size:109 final size:109
Alignment explanation
Indices: 8435955--8436418 Score: 514
Period size: 109 Copynumber: 4.3 Consensus size: 109
8435945 ATTAATCATG
* * **
8435955 TCAAGAAACCTT-TGAAAAGTCAGACTTAGTTTCTTT-AAA---AATTCATCAT-GTCAAGAAAC
1 TCAAGAAA-CTTCTGAAAA-TCAGACTTAGTTTCTTTGAAACTCATTTGAAAATAGTCAAGAAAC
* * ** * * *
8436014 CTATGAAAAGCAGACTTAGTGTCTTTGAAAGCTCATTTAAAAATCA
64 TTCTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* * * * * *
8436060 TCAAGAAATTTTTGAAAATCATACTTAGTTTCTTTAAAAACTCATTTGAAAATCGTCAAGTAACT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTT-GAAACTCATTTGAAAATAGTCAAGAAACT
*
8436125 TCTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATAA
65 TCTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* *
8436170 TCAAGAAACTTCTGAAAATC-GAATTTAGTTTCTTTGAAACTCATTTGAAAATTGTCAAGAAACT
1 TCAAGAAACTTCTGAAAATCAG-ACTTAGTTTCTTTGAAACTCATTTGAAAATAGTCAAGAAACT
* *
8436234 TCTAAAAATTAGACTTAGTTTCTTTAAAAAATCATTT-AAAATCA
65 TCTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* * * * *
8436278 -CAAGGAAACTTTTGAAAATCAGACTTAATTTCTTTGAAAGCTTATTTGAAAATAATCAAGCAAC
1 TCAA-GAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAA-CTCATTTGAAAATAGTCAAGAAAC
** * *
8436342 TTCTGAAAATCGGACTTAGTTTCTTTGAAAACTCATTTAAAAATCG
64 TTCTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* *
8436388 TCAATAAACTTCTAAAAATCAGACTTAGTTT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTT
8436419 TAATTGTCAA
Statistics
Matches: 304, Mismatches: 42, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
104 18 0.06
105 14 0.05
106 3 0.01
107 3 0.01
108 36 0.12
109 121 0.40
110 106 0.35
111 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (109 bp):
TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAACTCATTTGAAAATAGTCAAGAAACTT
CTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
Found at i:8436485 original size:55 final size:55
Alignment explanation
Indices: 8436424--8436837 Score: 407
Period size: 55 Copynumber: 7.6 Consensus size: 55
8436414 AGTTTTAATT
* **
8436424 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGGTCATTTAAAAATC
1 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
* * * * *
8436479 TTCAAGACACTTTTGAAAATCAGACTTAGTTTCTTTCAAAATTCATTTAAAAAT-
1 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
* ** * * * * *
8436533 ATCAAGAAACCCCAGAAAATTAGTCTTAGTTTCTTTCAAAAATTCA--T---CAT-
1 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTT-AAAAACTCATTTAAAAATC
* * * * *
8436583 GTCAAGAAACCTCTGAAAATCATACTTAATTTCTTTGAAAGCTCATTTAAAAATC
1 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
* * * *
8436638 ATCACGAAACCTT-TGAAAATCAGACTTAGTTTCTCTAAAAACTCATTTTAAAATC
1 GTCAAGAAA-CTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
* * *
8436693 GTCGAGAAACTTCTGAAAATCAGACCTAGTTTCTTTAAAAACTCATTTTAAAATC
1 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
* *
8436748 GTCGAGAAACTTCTGAAAACCAGACTTAGTTTCTTT-AAAACTCATTTAAAAAATACC
1 GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTT-AAAAAT--C
*
8436805 ATGTCAAGAAA-TCTCTGAAAATCAAACTTAGTT
1 --GTCAAGAAACT-TCTGAAAATCAGACTTAGTT
8436838 CCTAAAAACA
Statistics
Matches: 297, Mismatches: 47, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
49 6 0.02
50 31 0.10
51 1 0.00
53 1 0.00
54 44 0.15
55 184 0.62
56 2 0.01
57 1 0.00
58 1 0.00
59 26 0.09
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (55 bp):
GTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
Found at i:8436498 original size:92 final size:92
Alignment explanation
Indices: 8436333--8436510 Score: 275
Period size: 92 Copynumber: 1.9 Consensus size: 92
8436323 TTGAAAATAA
* * *
8436333 TCAAGCAACTTCTGAAAATCGGACTTAGTTTCTTTGAAAACTCATTTAAAAATCGTCAATAAACT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCGTCAAGAAACT
8436398 TCTAAAAATCAGACTTAGTTTTAATTG
66 TCTAAAAATCAGACTTAGTTTTAATTG
** * *
8436425 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGGTCATTTAAAAATCTTCAAGACACT
1 TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCGTCAAGAAACT
* *
8436490 TTTGAAAATCAGACTTAGTTT
66 TCTAAAAATCAGACTTAGTTT
8436511 CTTTCAAAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.35
Consensus pattern (92 bp):
TCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAACTCATTTAAAAATCGTCAAGAAACT
TCTAAAAATCAGACTTAGTTTTAATTG
Found at i:8436733 original size:159 final size:159
Alignment explanation
Indices: 8436423--8436846 Score: 442
Period size: 159 Copynumber: 2.6 Consensus size: 159
8436413 TAGTTTTAAT
* * * * *
8436423 TGTCAAGAAACTTCTGAAAATCAGACTTAGTTTCTTTGAAAGGTCATTTAAAAATCTTCAAGACA
1 TGTCAAGAAACCTCTGAAAATCAGACTTAATTTCTTTGAAAGCTCATTTAAAAATCATCAAGAAA
* * * *
8436488 CTTTTGAAAATCAGACTTAGTTTCTTTCAAAATTCATTTAAAAATATCAAGAAACCCCAGAAAAT
66 CCTTTGAAAATCAGACTTAGTTTCTCTAAAAACTCATTTAAAAATATCAAGAAACCCCAGAAAAT
* * * *
8436553 TAGTCTTAGTTTCTTTCAAAAATTCATCA
131 CAGACCTAGTTTCTTTCAAAAACTCATCA
* *
8436582 TGTCAAGAAACCTCTGAAAATCATACTTAATTTCTTTGAAAGCTCATTTAAAAATCATCACGAAA
1 TGTCAAGAAACCTCTGAAAATCAGACTTAATTTCTTTGAAAGCTCATTTAAAAATCATCAAGAAA
* * * ** *
8436647 CCTTTGAAAATCAGACTTAGTTTCTCTAAAAACTCATTTTAAAATCGTCGAGAAACTTCTGAAAA
66 CCTTTGAAAATCAGACTTAGTTTCTCTAAAAACTCATTTAAAAAT-ATCAAGAAACCCCAGAAAA
*
8436712 TCAGACCTAGTTTCTTT-AAAAACTCATTTTAAAA
130 TCAGACCTAGTTTCTTTCAAAAACTCA---T--CA
* * * * *
8436746 TCGTCGAGAAACTTCTGAAAACCAGACTTAGTTTCTTT-AAAACTCATTTAAAAAATACCATGTC
1 T-GTCAAGAAACCTCTGAAAATCAGACTTAATTTCTTTGAAAGCTCATTT-AAAAAT--CA--TC
* * *
8436810 AAGAAATCTCTGAAAATCAAACTTAG-TTC-CTAAAAAC
60 AAGAAACCTTTGAAAATCAGACTTAGTTTCTCTAAAAAC
8436847 ACACATTAGC
Statistics
Matches: 221, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
159 106 0.48
160 28 0.13
162 1 0.00
164 12 0.05
165 37 0.17
167 10 0.05
168 3 0.01
169 24 0.11
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (159 bp):
TGTCAAGAAACCTCTGAAAATCAGACTTAATTTCTTTGAAAGCTCATTTAAAAATCATCAAGAAA
CCTTTGAAAATCAGACTTAGTTTCTCTAAAAACTCATTTAAAAATATCAAGAAACCCCAGAAAAT
CAGACCTAGTTTCTTTCAAAAACTCATCA
Found at i:8442996 original size:332 final size:332
Alignment explanation
Indices: 8442383--8443008 Score: 912
Period size: 332 Copynumber: 1.9 Consensus size: 332
8442373 ATCCATGAAA
* * * * *
8442383 AAAGAAGGGGACTTATCGTGTTTCAATTGCAGGGAAAGACACATGAAGAGGGACTGTCCCCATCT
1 AAAGAAAGGGACTTATCATGTTTCAATTGCAGGGAAAAACACATGAAGAAGGACTATCCCCATCT
* * * * * *
8442448 CAAGAAAGTTACTACCATCAAGGATAATGATGGGCATGATAAGGAAACCTTGAAGTTTGGCTCTA
66 CAAGAAAGTTACTACCATCAAGGAGAATGATGGGAAAGAGAAGGAAACCTTGAAGCTTAGCTCTA
*
8442513 TCTTAAATTCCATGGAGGTCAAGAAGGGTCGTACCAAGAAGGGGTAGATGTTTATGAACATCACT
131 TCTTAAATTCCATGGAGGTCAAGAAGGGTCGTACCAAGAAGGGGTAGATATTTATGAACATCACT
*
8442578 GTGGCGAGTCATAAGATGAGTGCACTAGTTGACACTAGTGCATATGAGTTGTTCATGTCCGAACA
196 GTGGCGAGTCATAAGATGAGTGCACTAGTCGACACTAGTGCATATGAGTTGTTCATGTCCGAACA
**
8442643 AGTTGCTTAGAGACTTGGCCTTCGTTTGGAGAAGGTAAGATGCTTCATCAAGACCGTTTATTCCA
261 AGTTGCCAAGAGACTTGGCCTTCGTTTGGAGAAGGTAAGATGCTTCATCAAGACCGTTTATTCCA
8442708 AGGAAGG
326 AGGAAGG
* *
8442715 AAAGAAAGGGACTTATCATGTTTCAATTGTAGGGAAAAACATATGAAGAAGGACTATCCCCATCT
1 AAAGAAAGGGACTTATCATGTTTCAATTGCAGGGAAAAACACATGAAGAAGGACTATCCCCATCT
* * * *
8442780 CAAGATAGTTACTGCCATCAAGGAGAATGATGGGAAAGAGAATGAAACCTTGAAGCTTATCTCTA
66 CAAGAAAGTTACTACCATCAAGGAGAATGATGGGAAAGAGAAGGAAACCTTGAAGCTTAGCTCTA
* * * * * * * * * *
8442845 TCTTGAGTTCCATTGAGGTCAAGAAGGGTCTTATCAAGAAGGGGTTGATATTTGTGGACATTATT
131 TCTTAAATTCCATGGAGGTCAAGAAGGGTCGTACCAAGAAGGGGTAGATATTTATGAACATCACT
* * * * *
8442910 GTGGTGAGTCATAAGATGAGTGCACTAGTCGACATTGGTGCATCTGCA-TTTTTCATGTCCGAAC
196 GTGGCGAGTCATAAGATGAGTGCACTAGTCGACACTAGTGCATATG-AGTTGTTCATGTCCGAAC
8442974 AAGTTGCCAAGAGACTTGGCCTTCGTTTGGAGAAG
260 AAGTTGCCAAGAGACTTGGCCTTCGTTTGGAGAAG
8443009 ATAGGTGGCT
Statistics
Matches: 257, Mismatches: 36, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
332 256 1.00
333 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (332 bp):
AAAGAAAGGGACTTATCATGTTTCAATTGCAGGGAAAAACACATGAAGAAGGACTATCCCCATCT
CAAGAAAGTTACTACCATCAAGGAGAATGATGGGAAAGAGAAGGAAACCTTGAAGCTTAGCTCTA
TCTTAAATTCCATGGAGGTCAAGAAGGGTCGTACCAAGAAGGGGTAGATATTTATGAACATCACT
GTGGCGAGTCATAAGATGAGTGCACTAGTCGACACTAGTGCATATGAGTTGTTCATGTCCGAACA
AGTTGCCAAGAGACTTGGCCTTCGTTTGGAGAAGGTAAGATGCTTCATCAAGACCGTTTATTCCA
AGGAAGG
Found at i:8444655 original size:24 final size:22
Alignment explanation
Indices: 8444615--8444691 Score: 67
Period size: 24 Copynumber: 3.6 Consensus size: 22
8444605 ATGCAATTAA
8444615 TGCATCGATGCA---TAAGGAG
1 TGCATCGATGCACTGTAAGGAG
8444634 TGCATCGATGCACATGTTAAGG-G
1 TGCATCGATGCAC-TG-TAAGGAG
* *
8444657 ATGCATCGATACACTGT-A-GAA
1 -TGCATCGATGCACTGTAAGGAG
8444678 TGCATCGATGCACT
1 TGCATCGATGCACT
8444692 TCAAGGGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 12 0.25
20 14 0.29
21 1 0.02
22 1 0.02
23 3 0.06
24 17 0.35
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (22 bp):
TGCATCGATGCACTGTAAGGAG
Found at i:8445781 original size:2 final size:2
Alignment explanation
Indices: 8445774--8445802 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8445764 AGGAAAAATG
8445774 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8445803 GGAAGATGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8446303 original size:23 final size:23
Alignment explanation
Indices: 8446235--8446303 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
8446225 CAATCTTATA
*
8446235 TGGCACTTCGGTGTATTTCTACG
1 TGGCACTTCGGTGCATTTCTACG
* * * *
8446258 CGGTACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCATTTCTACG
*
8446281 TGGCACTTCGGTGCATTTATACG
1 TGGCACTTCGGTGCATTTCTACG
8446304 AGCTATGGTG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.17, C:0.23, G:0.26, T:0.33
Consensus pattern (23 bp):
TGGCACTTCGGTGCATTTCTACG
Found at i:8449430 original size:39 final size:39
Alignment explanation
Indices: 8449376--8449475 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
8449366 TCTATGACTT
* *
8449376 GTAAGTCCTTACCGTAGGCTCTTCAGCTTTGTACTCAGG
1 GTAAGTCCTTACCGTAGGCTCCTAAGCTTTGTACTCAGG
* *
8449415 GTAAGTCCTTACCGTAGGCTCCTAAGCTTTGTTCTCTGG
1 GTAAGTCCTTACCGTAGGCTCCTAAGCTTTGTACTCAGG
*
8449454 GTAAGTTCTTACCGTAGG-TCCT
1 GTAAGTCCTTACCGTAGGCTCCT
8449476 TAAGTTATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 4 0.07
39 52 0.93
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (39 bp):
GTAAGTCCTTACCGTAGGCTCCTAAGCTTTGTACTCAGG
Found at i:8449803 original size:174 final size:177
Alignment explanation
Indices: 8449513--8449861 Score: 668
Period size: 174 Copynumber: 2.0 Consensus size: 177
8449503 GGTGTAAATG
8449513 TGGGTGTATGGTTCTGGGGAACATACACATTCTTGTGATTGGATGGGGGTAGTGTTCATATTTTT
1 TGGGTGTATGGTTCTGGGGAACATACACATTCTTGTGATTGGATGGGGGTAGTGTTCATATTTTT
8449578 TAAAACTTGTTTGATAAACTAATTTTAATGACGTATTATATCTGTATATTTTTAT-A-CGTAAGG
66 TAAAACTTGTTTGATAAACTAATTTTAATGACGTATTATATCTGTATATTTTTATAACCGTAAGG
8449641 AGCACACTGAGCTATTTAGCTCATTCTGT-AATTTTAACCTTTTAAA
131 AGCACACTGAGCTATTTAGCTCATTCTGTAAATTTTAACCTTTTAAA
8449687 TGGGTGTATGGTTCTGGGGAACATACACATTCTTGTGATTGGATGGGGGTAGTGTTCATATTTTT
1 TGGGTGTATGGTTCTGGGGAACATACACATTCTTGTGATTGGATGGGGGTAGTGTTCATATTTTT
8449752 TAAAACTTGTTTGATAAACTAATTTTAATGACGTATTATATCTGTATATTTTTATACACCGTAAG
66 TAAAACTTGTTTGATAAACTAATTTTAATGACGTATTATATCTGTATATTTTTATA-ACCGTAAG
8449817 GAGCACACTGAGCTATTTAGCTCATTCTGTAAATTTTAACCTTTT
130 GAGCACACTGAGCTATTTAGCTCATTCTGTAAATTTTAACCTTTT
8449862 CAGATAGTAG
Statistics
Matches: 171, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
174 120 0.70
176 1 0.01
177 36 0.21
178 14 0.08
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.41
Consensus pattern (177 bp):
TGGGTGTATGGTTCTGGGGAACATACACATTCTTGTGATTGGATGGGGGTAGTGTTCATATTTTT
TAAAACTTGTTTGATAAACTAATTTTAATGACGTATTATATCTGTATATTTTTATAACCGTAAGG
AGCACACTGAGCTATTTAGCTCATTCTGTAAATTTTAACCTTTTAAA
Found at i:8455474 original size:39 final size:39
Alignment explanation
Indices: 8455420--8455504 Score: 134
Period size: 39 Copynumber: 2.2 Consensus size: 39
8455410 TCTATGACTT
* *
8455420 GTAAGTCCTTACCGCAGGCTCCTCGGCTTTATGCTCAGG
1 GTAAGTCCTTACCGCAGGCTCCTCAGCTTTATGCTCAAG
* *
8455459 GTAAGTCCTTACCGCAGGCTCCTCAGCTTTGTGCTTAAG
1 GTAAGTCCTTACCGCAGGCTCCTCAGCTTTATGCTCAAG
8455498 GTAAGTC
1 GTAAGTC
8455505 TTTAGCACAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.18, C:0.28, G:0.25, T:0.29
Consensus pattern (39 bp):
GTAAGTCCTTACCGCAGGCTCCTCAGCTTTATGCTCAAG
Found at i:8456154 original size:21 final size:21
Alignment explanation
Indices: 8456130--8456181 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
8456120 AATGAAAAAG
8456130 ATCGATCCCTTCACTAGAAGA
1 ATCGATCCCTTCACTAGAAGA
** * *
8456151 ATCGATCATTTTACTAGAAGG
1 ATCGATCCCTTCACTAGAAGA
*
8456172 ATCAATCCCT
1 ATCGATCCCT
8456182 CGATGAAAAG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (21 bp):
ATCGATCCCTTCACTAGAAGA
Found at i:8458361 original size:21 final size:21
Alignment explanation
Indices: 8458312--8458352 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8458302 TAGAGTAATC
8458312 TATATTTTAGTACCTAAACTA
1 TATATTTTAGTACCTAAACTA
* *
8458333 TATGTTTTAGTACTTAAACT
1 TATATTTTAGTACCTAAACT
8458353 TTTAATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.46
Consensus pattern (21 bp):
TATATTTTAGTACCTAAACTA
Found at i:8461241 original size:27 final size:27
Alignment explanation
Indices: 8461203--8461263 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
8461193 GCATTTCTAT
*
8461203 GTCTGCCTCGCAATCGAGTATAAGAAA
1 GTCTGCCTCGCAATCAAGTATAAGAAA
8461230 GTCTGCCTCGCAATCAAGTATAAGAAA
1 GTCTGCCTCGCAATCAAGTATAAGAAA
8461257 GTCTGCC
1 GTCTGCC
8461264 GGAAAAACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (27 bp):
GTCTGCCTCGCAATCAAGTATAAGAAA
Found at i:8461441 original size:115 final size:115
Alignment explanation
Indices: 8461239--8461469 Score: 462
Period size: 115 Copynumber: 2.0 Consensus size: 115
8461229 AGTCTGCCTC
8461239 GCAATCAAGTATAAGAAAGTCTGCCGGAAAAACAAACTTGTCAACTCTTACAATGACATCCTTGA
1 GCAATCAAGTATAAGAAAGTCTGCCGGAAAAACAAACTTGTCAACTCTTACAATGACATCCTTGA
8461304 TTTATCCTTCCAGTTGAGCTAATGATCTGTTAGCTAGTTGTGGACTTCAT
66 TTTATCCTTCCAGTTGAGCTAATGATCTGTTAGCTAGTTGTGGACTTCAT
8461354 GCAATCAAGTATAAGAAAGTCTGCCGGAAAAACAAACTTGTCAACTCTTACAATGACATCCTTGA
1 GCAATCAAGTATAAGAAAGTCTGCCGGAAAAACAAACTTGTCAACTCTTACAATGACATCCTTGA
8461419 TTTATCCTTCCAGTTGAGCTAATGATCTGTTAGCTAGTTGTGGACTTCAT
66 TTTATCCTTCCAGTTGAGCTAATGATCTGTTAGCTAGTTGTGGACTTCAT
8461469 G
1 G
8461470 TGGCCAATTC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 116 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (115 bp):
GCAATCAAGTATAAGAAAGTCTGCCGGAAAAACAAACTTGTCAACTCTTACAATGACATCCTTGA
TTTATCCTTCCAGTTGAGCTAATGATCTGTTAGCTAGTTGTGGACTTCAT
Found at i:8465978 original size:249 final size:248
Alignment explanation
Indices: 8465512--8466010 Score: 948
Period size: 249 Copynumber: 2.0 Consensus size: 248
8465502 ACAGTAGCTT
8465512 GACCATCAACTGTTTCAATATACTCATGGCCAATTTGATTGTAGTATCCAGCACTAAGAGCAAAC
1 GACCATCAACTGTTTCAATATACTCATGGCCAATTTGATTGTAGTATCCAGCACTAAGAGCAAAC
8465577 TAACAATTACCAAATATTGCATCAAGAACTAGCAGTGAACAAACCAAGACAAAATTTGTAATAAA
66 TAACAATTACCAAATATTGCATCAAGAACTAGCAGTGAACAAACCAAGACAAAATTTGTAATAAA
8465642 TTAAAATTTCGTGTTGAACCCGTATAGAAATATATGCTCACATATTATTCACTAAAACGAACGTA
131 TTAAAATTTCGTGTTGAACCCGTATAGAAATATATGCTCACATATTATTCACTAAAACGAACGTA
8465707 ACTTGAGCTCTTTACATTGGATTGACGTG-TTCAAGTTACATTG-AAAGATAA
196 ACTTGAGCTCTTTACATTGGATTGACGTGTTTCAAGTTACATTGAAAAGATAA
*
8465758 GACCATCAACTGTTTCAATATACTCATGGCCATTTTGATTGTAGTATCCAGCACTAAGAGCAAAC
1 GACCATCAACTGTTTCAATATACTCATGGCCAATTTGATTGTAGTATCCAGCACTAAGAGCAAAC
8465823 TAACAATTACCAAATATTTGCATCAAGAACTAGCAGTGAACAAACCAAGACAAAAATTTGTAATA
66 TAACAATTACCAAATA-TTGCATCAAGAACTAGCAGTGAACAAACCAAGAC-AAAATTTGTAATA
8465888 AATTAAAATTTTCGTGTTGAACCCGTATAGAAATATATGCTCACATATTATTCACTAAAACGAAC
129 AATTAAAA-TTTCGTGTTGAACCCGTATAGAAATATATGCTCACATATTATTCACTAAAACGAAC
8465953 GTAACTTGAGCTCTTTACATTGGATTGACGTGTTTCAAGTTACATTGAAAAGATAA
193 GTAACTTGAGCTCTTTACATTGGATTGACGTGTTTCAAGTTACATTGAAAAGATAA
8466009 GA
1 GA
8466011 GATAATCAAT
Statistics
Matches: 247, Mismatches: 1, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
246 80 0.32
247 34 0.14
248 21 0.09
249 88 0.36
250 14 0.06
251 10 0.04
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (248 bp):
GACCATCAACTGTTTCAATATACTCATGGCCAATTTGATTGTAGTATCCAGCACTAAGAGCAAAC
TAACAATTACCAAATATTGCATCAAGAACTAGCAGTGAACAAACCAAGACAAAATTTGTAATAAA
TTAAAATTTCGTGTTGAACCCGTATAGAAATATATGCTCACATATTATTCACTAAAACGAACGTA
ACTTGAGCTCTTTACATTGGATTGACGTGTTTCAAGTTACATTGAAAAGATAA
Found at i:8466793 original size:17 final size:16
Alignment explanation
Indices: 8466749--8466797 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
8466739 AGGAAATTGA
8466749 AAAAGAAAAAAG-G-G
1 AAAAGAAAAAAGAGAG
* *
8466763 AAAACAAAACAGAGAG
1 AAAAGAAAAAAGAGAG
8466779 AAAGAGAAAAAAGAGAG
1 AAA-AGAAAAAAGAGAG
8466796 AA
1 AA
8466798 GCTCTCAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 10 0.36
15 1 0.04
16 4 0.14
17 13 0.46
ACGTcount: A:0.71, C:0.04, G:0.24, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAGAG
Found at i:8468480 original size:54 final size:51
Alignment explanation
Indices: 8468419--8468522 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 51
8468409 GCTCATAAGC
* *
8468419 TTATTTTTACCAAAATACTTACTATTTAAATTTCATAAGCTCATAAGCTTATTA
1 TTATTTTTACCAAAATACTTACCA-TT--ATTCCATAAGCTCATAAGCTTATTA
** * * *
8468473 TTATTTTTTTCAATATACTTGCCATTATTCCGTAAGCTCATAAGCTTATT
1 TTATTTTTACCAAAATACTTACCATTATTCCATAAGCTCATAAGCTTATT
8468523 TGCATGGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
51 22 0.51
53 2 0.05
54 19 0.44
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.46
Consensus pattern (51 bp):
TTATTTTTACCAAAATACTTACCATTATTCCATAAGCTCATAAGCTTATTA
Found at i:8483849 original size:47 final size:45
Alignment explanation
Indices: 8483755--8483880 Score: 173
Period size: 47 Copynumber: 2.8 Consensus size: 45
8483745 GTAACCATGC
* * *
8483755 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATTGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGAA
* *
8483799 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATTGGAA
*
8483846 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
8483881 AGATTTTATT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
44 22 0.30
45 11 0.15
46 1 0.01
47 39 0.53
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGAA
Found at i:8490877 original size:47 final size:45
Alignment explanation
Indices: 8490783--8490908 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
8490773 GTAACCATGC
* * *
8490783 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATTGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGAA
* * *
8490827 AAATAAGTTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATTGGAA
*
8490874 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
8490909 AGATTTTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
44 21 0.30
45 11 0.15
46 1 0.01
47 38 0.54
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGAA
Found at i:8494314 original size:24 final size:24
Alignment explanation
Indices: 8494227--8494307 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
8494217 ATTTCTGATT
*
8494227 TGAATTATGTTATGATA-TCTGACC
1 TGAATTATGATATGATACT-TGACC
*
8494251 TTG-ATTATGATATGATACTTGACA
1 -TGAATTATGATATGATACTTGACC
* * *
8494275 TGGATTCTGATCTGATACTTGACC
1 TGAATTATGATATGATACTTGACC
8494299 TGAATTATG
1 TGAATTATG
8494308 TTTTGATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 2 0.04
24 42 0.89
25 3 0.06
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (24 bp):
TGAATTATGATATGATACTTGACC
Found at i:8494489 original size:2 final size:2
Alignment explanation
Indices: 8494482--8494548 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
8494472 GGGGGTAGTG
8494482 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8494524 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8494549 TTTAAAAAGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8498521 original size:7 final size:7
Alignment explanation
Indices: 8498505--8498535 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8498495 AAAGTTTCTC
8498505 ATTT-AA
1 ATTTGAA
8498511 ATTTGAA
1 ATTTGAA
8498518 ATTTGAA
1 ATTTGAA
8498525 ATTTGAA
1 ATTTGAA
8498532 ATTT
1 ATTT
8498536 TTGAAAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (7 bp):
ATTTGAA
Found at i:8498588 original size:65 final size:66
Alignment explanation
Indices: 8498467--8498606 Score: 153
Period size: 65 Copynumber: 2.1 Consensus size: 66
8498457 TTTTCACATG
* * * *
8498467 TTTTTCGAAAAATGAGAAAATGATTTCTAAAGTTTCTCATTTAAATTTGAAATTTGAAATTTGA-
1 TTTTTCGAAAAATAAGAAAATGATTTCCAAAGTTTCTCATTTAAATCT-AAATTTGAAAATTGAT
8498531 AA
65 AA
* *
8498533 TTTTT-GAAAAGTAAGAAAATGATTTCCAAAGTTTCTCACCTATTAAA-CT-ATTTTGAAAATTG
1 TTTTTCGAAAAATAAGAAAATGATTTCCAAAGTTTCTCA--T-TTAAATCTAAATTTGAAAATTG
8498595 ATAA
63 ATAA
8498599 TTCTTTCG
1 TT-TTTCG
8498607 GGCCATCAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
65 42 0.68
66 9 0.15
67 5 0.08
68 6 0.10
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (66 bp):
TTTTTCGAAAAATAAGAAAATGATTTCCAAAGTTTCTCATTTAAATCTAAATTTGAAAATTGATA
A
Found at i:8498711 original size:262 final size:256
Alignment explanation
Indices: 8498092--8498733 Score: 790
Period size: 262 Copynumber: 2.5 Consensus size: 256
8498082 TTAGTAAGTC
* *
8498092 CTTT-GGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGTCATCTATAAGCCTT
1 CTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTATAAGCCTT
* * *
8498156 TCGAGC------A-A-T-A-TCAGACCATCTATAAGACCTTCGGGCATAATGTTTTCACATGTTT
66 TCGAGCAAGATGATAGTCATTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTT
*
8498211 TTCGAAAAATAAGTAAACGATTACCAAAGTTTCTCATTTAAATATAAAAATTGAAATTTTTGAAA
131 TTCGAAAAATAAGAAAACGATTACCAAAGTTTCTCATTTAAATATAAAAATTGAAATTTTTGAAA
*
8498276 AGTAAGAAAACGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGATAGATAAGT
196 AGTAAGAAAACGATTTCCAAAGTTTCTCACCTAGTAAACTATTTCCAAAATTGATAGAT-A-T
* * * *
8498339 CCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTTATCTATAAGCCTT
1 CTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTATAAGCCTT
* * * *
8498404 CCGTGAAAGATGATAAGTCATT-TGAGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGT
66 TCGAGCAAGATGAT-AGTCATTCAG-GCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGT
* * * * *
8498468 TTTTCGAAAAATGAGAAAATGATTTCTAAAGTTTCTCATTTAAATTTGAAATTTGAAATTTGAAA
129 TTTTCGAAAAATAAGAAAACGATTACCAAAGTTTCTCATTTAAATAT--AA----AAA-TTGAAA
* * **
8498533 TTTTTGAAAAGTAAGAAAATGATTTCCAAAGTTTCTCACCTATTAAACTATTTTGAAAATTGATA
187 TTTTTGAAAAGTAAGAAAACGATTTCCAAAGTTTCTCACCTAGTAAACTATTTCCAAAATTGATA
8498598 -AT-T
252 GATAT
* * * * *
8498601 CTTTCGGGCCATCAGTAAATCTTTCGAGCATAATGATTAAATCCTTCGGGTCAGCTATGAGGCTT
1 CTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTATAAGCCTT
* * *
8498666 TCGAGCAAGATGATAGGTCATTCAGGCCATCCATAAGTCCTTCGGGTAGGATGTTTTCACATGTT
66 TCGAGCAAGATGATA-GTCATTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTT
8498731 TTT
130 TTT
8498734 TGGGTGAGGG
Statistics
Matches: 333, Mismatches: 40, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
247 3 0.01
248 58 0.17
254 1 0.00
256 1 0.00
257 1 0.00
258 2 0.01
259 78 0.23
261 3 0.01
262 114 0.34
263 1 0.00
265 5 0.02
266 66 0.20
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (256 bp):
CTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTATAAGCCTT
TCGAGCAAGATGATAGTCATTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTT
TTCGAAAAATAAGAAAACGATTACCAAAGTTTCTCATTTAAATATAAAAATTGAAATTTTTGAAA
AGTAAGAAAACGATTTCCAAAGTTTCTCACCTAGTAAACTATTTCCAAAATTGATAGATAT
Found at i:8504470 original size:3 final size:3
Alignment explanation
Indices: 8504402--8504452 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
8504392 TAATTAAACT
* * * *
8504402 ATA ATA ATA TTA ATA ATA ATA ATA ATA TTA TTA AT- ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8504449 ATA A
1 ATA A
8504453 AATGTATAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
2 1 0.02
3 40 0.98
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:8504470 original size:9 final size:8
Alignment explanation
Indices: 8504401--8504482 Score: 51
Period size: 9 Copynumber: 9.8 Consensus size: 8
8504391 ATAATTAAAC
8504401 TATAATAA
1 TATAATAA
8504409 TATTAATAA
1 TA-TAATAA
8504418 TAATAATAA
1 T-ATAATAA
*
8504427 TATTATTAA
1 TA-TAATAA
*
8504436 TACAATAA
1 TATAATAA
8504444 TAATAATAA
1 T-ATAATAA
* *
8504453 AATGTATAAA
1 TAT-AAT-AA
8504463 TATAATAA
1 TATAATAA
*
8504471 CA-AA-AA
1 TATAATAA
8504477 TATAAT
1 TATAAT
8504483 GATAATATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
6 3 0.05
7 4 0.07
8 13 0.23
9 31 0.55
10 5 0.09
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.35
Consensus pattern (8 bp):
TATAATAA
Found at i:8504572 original size:20 final size:18
Alignment explanation
Indices: 8504530--8504573 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
8504520 AATAACATTA
*
8504530 ATATAATAATACTATTTT
1 ATATAATAATAATATTTT
8504548 A-ATAATAATAATATTGTT
1 ATATAATAATAATATT-TT
8504566 ATTATAAT
1 A-TATAAT
8504574 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 13 0.59
18 4 0.18
20 5 0.23
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
ATATAATAATAATATTTT
Found at i:8504779 original size:22 final size:22
Alignment explanation
Indices: 8504740--8504795 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
8504730 TTGTTTTACC
* *
8504740 ATATTAACAATAATATAATAATA
1 ATATTAA-TATAAAATAATAATA
* *
8504763 CTATTAATATAAAATAATATTA
1 ATATTAATATAAAATAATAATA
8504785 ATATTAATATA
1 ATATTAATATA
8504796 CTAATGTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTAATATAAAATAATAATA
Found at i:8504783 original size:16 final size:17
Alignment explanation
Indices: 8504750--8504816 Score: 73
Period size: 17 Copynumber: 3.8 Consensus size: 17
8504740 ATATTAACAA
*
8504750 TAATATAATAATACTAT
1 TAATATAATAATAATAT
8504767 TAATATAA-AATAATAT
1 TAATATAATAATAATAT
*
8504783 TAATATTAATATACTAATGT
1 TAATA-TAATA-A-TAATAT
*
8504803 TAAAATAATAATAA
1 TAATATAATAATAA
8504817 CAATAATAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
16 12 0.28
17 14 0.33
18 2 0.05
19 6 0.14
20 9 0.21
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (17 bp):
TAATATAATAATAATAT
Found at i:8504845 original size:3 final size:3
Alignment explanation
Indices: 8504748--8504827 Score: 53
Period size: 3 Copynumber: 28.3 Consensus size: 3
8504738 CCATATTAAC
* * * *
8504748 AAT AAT -AT AAT AAT ACT ATT AAT -AT AA- AAT AAT ATT AAT ATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** *
8504793 -AT ACT AAT GTT AA- AAT AAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8504828 TTATTTTTAA
Statistics
Matches: 57, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
2 10 0.18
3 47 0.82
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:8506659 original size:19 final size:19
Alignment explanation
Indices: 8506631--8506678 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
8506621 AACGTGTAGG
*
8506631 TCAAATTCAATGGTTCAGA
1 TCAAAGTCAATGGTTCAGA
*
8506650 TCAAAGTCAATGGTTCATA
1 TCAAAGTCAATGGTTCAGA
8506669 TCAAAGTCAA
1 TCAAAGTCAA
8506679 CAAGTCAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.29
Consensus pattern (19 bp):
TCAAAGTCAATGGTTCAGA
Found at i:8507105 original size:65 final size:63
Alignment explanation
Indices: 8507036--8507195 Score: 196
Period size: 65 Copynumber: 2.5 Consensus size: 63
8507026 AATTAAATTG
* *
8507036 AACATCGAATGCATTTCATGCATCGGTGCACATACCATGCACCGATGCACTGAGGAT-TTTATGA
1 AACATCGAATGCATTTGATGCATCGGTGCACA-ACCATGCACCGATGCACTCAGGATATTT-TG-
8507100 A
63 A
* * * * *
8507101 AACATCGAATGCATTTGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGGTGCA-CAACCATGCACCGATGCACTCAGGATATTTTGA
* *
8507165 AACATTGAATGCAGTTGATGCATCGGTGCAC
1 AACATCGAATGCATTTGATGCATCGGTGCAC
8507196 TCTTAGTGCA
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
63 1 0.01
64 28 0.34
65 49 0.59
66 5 0.06
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (63 bp):
AACATCGAATGCATTTGATGCATCGGTGCACAACCATGCACCGATGCACTCAGGATATTTTGA
Found at i:8515753 original size:28 final size:28
Alignment explanation
Indices: 8515721--8515782 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
8515711 AAAACATCGA
*
8515721 ATGCATTTGATGCATCGATGCACTAGCC
1 ATGCATTTGATGCATCGATGCACCAGCC
*
8515749 ATGCATTTGATGCATCGATGCACCAGCT
1 ATGCATTTGATGCATCGATGCACCAGCC
8515777 ATGCAT
1 ATGCAT
8515783 CGATGCACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (28 bp):
ATGCATTTGATGCATCGATGCACCAGCC
Found at i:8515766 original size:93 final size:92
Alignment explanation
Indices: 8515656--8515836 Score: 240
Period size: 93 Copynumber: 2.0 Consensus size: 92
8515646 TGAACATCGA
*
8515656 ATGCATTTCATGCATCGATGCA-CATACCATGCACCGATGCACTGAGGAT-TTTATGAAAACATC
1 ATGCATTTCATGCATCGATGCACCA-ACCATGCACCGATGCACTCAGGATATTT-TG-AAACATC
* *
8515719 GAATGCATTTGATGCATCGATGCACTAGCC
63 AAATGCACTTGATGCATCGATGCACTAGCC
* * * * * *
8515749 ATGCATTTGATGCATCGATGCACCAGCTATGCATCGATGCACTCTGGCTATTTTGAAACATCAAA
1 ATGCATTTCATGCATCGATGCACCAACCATGCACCGATGCACTCAGGATATTTTGAAACATCAAA
8515814 TGCACTTGATGCATCGATGCACT
66 TGCACTTGATGCATCGATGCACT
8515837 CTTAGTTCAC
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
92 31 0.40
93 41 0.53
94 5 0.06
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (92 bp):
ATGCATTTCATGCATCGATGCACCAACCATGCACCGATGCACTCAGGATATTTTGAAACATCAAA
TGCACTTGATGCATCGATGCACTAGCC
Found at i:8517494 original size:12 final size:12
Alignment explanation
Indices: 8517477--8517503 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8517467 TATGAAGGGG
8517477 AAATTATTAATA
1 AAATTATTAATA
8517489 AAATTATTAATA
1 AAATTATTAATA
8517501 AAA
1 AAA
8517504 AATCAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATTATTAATA
Found at i:8521080 original size:18 final size:20
Alignment explanation
Indices: 8521038--8521084 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
8521028 ACAAGTATTT
*
8521038 CAAAATATAGACACATGTCA
1 CAAAAAATAGACACATGTCA
8521058 CAAAAAATAGACACAT-T-A
1 CAAAAAATAGACACATGTCA
8521076 CAAAAAATA
1 CAAAAAATA
8521085 ATATTGTACG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 10 0.38
19 1 0.04
20 15 0.58
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (20 bp):
CAAAAAATAGACACATGTCA
Found at i:8522483 original size:20 final size:20
Alignment explanation
Indices: 8522460--8522498 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8522450 ATTCGGTCTG
8522460 AGTTAACT-AAGACTGGTTCA
1 AGTTAACTCAA-ACTGGTTCA
*
8522480 AGTTGACTCAAACTGGTTC
1 AGTTAACTCAAACTGGTTC
8522499 TAAAAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (20 bp):
AGTTAACTCAAACTGGTTCA
Found at i:8526295 original size:3 final size:3
Alignment explanation
Indices: 8526287--8526318 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8526277 GTCCTGATAC
8526287 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8526319 ATTTTTGCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8526509 original size:26 final size:25
Alignment explanation
Indices: 8526480--8526555 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 25
8526470 AGTTGCTCTG
* *
8526480 TCCCATGCCACATTTGTCTGCACCTA
1 TCCCCTGCCACA-TCGTCTGCACCTA
8526506 TCCCCTGCCACCATCGTCTGCACCTA
1 TCCCCTGCCA-CATCGTCTGCACCTA
*
8526532 TCCCCTGCCACCATCATCTGCACC
1 TCCCCTGCCA-CATCGTCTGCACC
8526556 AACACCCCAC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 44 0.96
27 2 0.04
ACGTcount: A:0.17, C:0.47, G:0.11, T:0.25
Consensus pattern (25 bp):
TCCCCTGCCACATCGTCTGCACCTA
Found at i:8529342 original size:22 final size:22
Alignment explanation
Indices: 8529314--8529355 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8529304 TTTAACTTTT
8529314 TCGGTCAAAGTCAACGGTCAGA
1 TCGGTCAAAGTCAACGGTCAGA
*
8529336 TCGGTCAAAGTCAGCGGTCA
1 TCGGTCAAAGTCAACGGTCA
8529356 ACGTATTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.19
Consensus pattern (22 bp):
TCGGTCAAAGTCAACGGTCAGA
Found at i:8529410 original size:14 final size:14
Alignment explanation
Indices: 8529379--8529443 Score: 78
Period size: 14 Copynumber: 4.7 Consensus size: 14
8529369 TCAAAATCAA
*
8529379 CGAGTTAACTCA-T
1 CGAGTTGACTCAGT
*
8529392 TGAGTTGACTCAGT
1 CGAGTTGACTCAGT
*
8529406 TGAGTTGACTCAGT
1 CGAGTTGACTCAGT
* *
8529420 CGAGTTAACTCAGC
1 CGAGTTGACTCAGT
8529434 CGAGTTGACT
1 CGAGTTGACT
8529444 TAGTGACTAG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
13 10 0.22
14 35 0.78
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (14 bp):
CGAGTTGACTCAGT
Found at i:8531953 original size:131 final size:130
Alignment explanation
Indices: 8531732--8532070 Score: 437
Period size: 131 Copynumber: 2.6 Consensus size: 130
8531722 CTCGTTTTGG
*
8531732 TTGGAGTAATAAATGACTGTTTAAGGCATGAGAAGTCATTTATTCTCAATTGGAAATAATAAGAT
1 TTGGAGTAATAAATGACTGTTTAAGGCATGAGAAGTCATTTATTCTCAATTGGAAATAATTAGAT
* * * * * * * * *
8531797 ATTACCATTTTCTCTCGAGTTAATATTGATTTTTAAGACGGAATAGTGATATCTCTTAATTTCGA
66 ATTATCATTTTCACTCGAATCAATATTGAATTTTAAGAAGGAATAATGATATATCTTAATTTCAA
* * * * *
8531862 TTGGAGTAATAAAAGACTGCTTTAAGGCATTAGATGTCAATTATTCTCAATTGGAAATCATTAGA
1 TTGGAGTAATAAATGACTG-TTTAAGGCATGAGAAGTCATTTATTCTCAATTGGAAATAATTAGA
*
8531927 TATTATCATTTTCACTCGAATCAATATTGAATTTTAAGAAGGAATAATGATATATCTTCATTTCA
65 TATTATCATTTTCACTCGAATCAATATTGAATTTTAAGAAGGAATAATGATATATCTTAATTTCA
8531992 A
130 A
* * * ** *
8531993 TTGGGGTAATAAATGGCTGTTTTAAGGCATGA-AGGGTCATTTATTCTTGATTGGAAATAATTAC
1 TTGGAGTAATAAATGACTG-TTTAAGGCATGAGA-AGTCATTTATTCTCAATTGGAAATAATTAG
*
8532057 ATATTATCGTTTTC
64 ATATTATCATTTTC
8532071 TCTCTTAAAA
Statistics
Matches: 179, Mismatches: 28, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
130 19 0.11
131 160 0.89
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.39
Consensus pattern (130 bp):
TTGGAGTAATAAATGACTGTTTAAGGCATGAGAAGTCATTTATTCTCAATTGGAAATAATTAGAT
ATTATCATTTTCACTCGAATCAATATTGAATTTTAAGAAGGAATAATGATATATCTTAATTTCAA
Found at i:8539665 original size:135 final size:134
Alignment explanation
Indices: 8539410--8540037 Score: 530
Period size: 135 Copynumber: 4.7 Consensus size: 134
8539400 AATAGAACTT
* * * * *
8539410 GATTCAATCTTCCTTGAAGAATAACG-GAATGAATCAACATTTTCAGTTCTAATTTTCCCTCAAG
1 GATTCAATCTTCCCTGAAGAAT-A-GTAAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAG
* * * * * * ** * * * * *
8539474 AAGCATTTGAACAAATCTCACTTTTTTCTAGTTTTGATCA-TCCCTGCGAAATAGTGGAACAAGT
64 AAGTAGTGGAACAAATCCCTCTTTTTTCCAAATTCGAT-ATTCCTTGAGGAACAGTGGAACAAGT
8539538 CTGTCTC
128 CTGTCTC
* * ** * * *
8539545 GATTCAATCTTCCCTGAATATTAGTGAAATGAATCAGTATTTCTAGATCTTATTTTTCCTCAAGA
1 GATTCAATCTTCCCTGAAGAATAGT-AAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGA
* * * * * * * * *
8539610 CGCAGCGAAACATATCCCTCTTTTTTCCAGATTCGATATTCTTTGAGGAACAGTGGAATAAGTCA
65 AGTAGTGGAACAAATCCCTCTTTTTTCCAAATTCGATATTCCTTGAGGAACAGTGGAACAAGTCT
*
8539675 G-CATT
130 GTC-TC
* * * *
8539680 GATACATTCTTCCCTGAAGTATA-T-AATGAATCAACATTTCCAGATCTGATTTTTCCTCAAGAA
1 GATTCAATCTTCCCTGAAGAATAGTAAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAA
* * * * * * * *
8539743 GTAGTGGAACAGATCCCTATTTTTCCCAAATTTGATATTCCTTAAGGAATAGTAGAACAAATCTG
66 GTAGTGGAACAAATCCCTCTTTTTTCCAAATTCGATATTCCTTGAGGAACAGTGGAACAAGTCTG
8539808 TCTC
131 TCTC
* * * * * * * *
8539812 AATTCAATCTTCCCTTAAGAATAGTGGAATGAATCAACATTTCCATATCTAATTTTCCCACGATA
1 GATTCAATCTTCCCTGAAGAATAGT-AAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGA
* * * *
8539877 AGTAGTGGAACAAATCCCTCATTTTTCCATA-TCTGATCTTCCCTGAGGAACAGTGGAACAAGTC
65 AGTAGTGGAACAAATCCCTCTTTTTTCCAAATTC-GATATTCCTTGAGGAACAGTGGAACAAGTC
* *
8539941 TGCCTT
129 TGTCTC
* *
8539947 GATTCAATCTTCCATGAAGAACAGTAGAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGA
1 GATTCAATCTTCCCTGAAGAATAGTA-AATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGA
** * * *
8540012 AACAGTAGAACAAATCCATCTCTTTT
65 AGTAGTGGAACAAATCCCTCTTTTTT
8540038 AAGTTTTGAT
Statistics
Matches: 386, Mismatches: 97, Indels: 20
0.77 0.19 0.04
Matches are distributed among these distances:
132 103 0.27
133 3 0.01
134 5 0.01
135 275 0.71
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (134 bp):
GATTCAATCTTCCCTGAAGAATAGTAAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAA
GTAGTGGAACAAATCCCTCTTTTTTCCAAATTCGATATTCCTTGAGGAACAGTGGAACAAGTCTG
TCTC
Found at i:8539931 original size:267 final size:269
Alignment explanation
Indices: 8539436--8540012 Score: 626
Period size: 267 Copynumber: 2.1 Consensus size: 269
8539426 AAGAATAACG
* * * * * * *
8539436 GAATGAATCAACATTTTCAGTTCTAATTTTCCCTCAAGAAGCATTTGAACAAATCTCACT-TTTT
1 GAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAAGTAGTGGAACAGATC-C-CTATTTT
* ** * ** * * * *
8539500 T-CTAGTTTTGATCA-TCCCTGCGAAATAGTGGAACAAGTCTGTCTCGATTCAATCTTCCCTGAA
64 TCCCAAATTTGAT-ATTCCTTAAGGAATAGTAGAACAAATCTGTCTCAATTCAATCTTCCCTGAA
* * ** * * * * * *
8539563 TATTAGTGAAATGAATCAGTATTTCTAGATCTTATTTTTCCTCAAGACGCAGCGAAACATATCCC
128 GAATAGTGAAATGAATCAACATTTCCAGATCTAATTTTCCCACAAGAAGCAGCGAAACAAATCCC
* ** * *
8539628 TCTTTTTTCCAGATTCGATATTCTTTGAGGAACAGTGGAATAAGTCAGCATTGATACATTCTTCC
193 TCATTTTTCCAGATTCGATATTCCCTGAGGAACAGTGGAACAAGTCAGCATTGATACAATCTTCC
* *
8539693 CTGAAG-TA-TA
258 ATGAAGACAGTA
* *
8539703 TAATGAATCAACATTTCCAGATCTGATTTTTCCTCAAGAAGTAGTGGAACAGATCCCTATTTTTC
1 GAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAAGTAGTGGAACAGATCCCTATTTTTC
*
8539768 CCAAATTTGATATTCCTTAAGGAATAGTAGAACAAATCTGTCTCAATTCAATCTTCCCTTAAGAA
66 CCAAATTTGATATTCCTTAAGGAATAGTAGAACAAATCTGTCTCAATTCAATCTTCCCTGAAGAA
* * * * * * *
8539833 TAGTGGAATGAATCAACATTTCCATATCTAATTTTCCCACGATAAGTAGTGGAACAAATCCCTCA
131 TAGTGAAATGAATCAACATTTCCAGATCTAATTTTCCCACAAGAAGCAGCGAAACAAATCCCTCA
* * * * *
8539898 TTTTTCCATA-TCTGATCTTCCCTGAGGAACAGTGGAACAAGTCTGCCTTGATTCAATCTTCCAT
196 TTTTTCCAGATTC-GATATTCCCTGAGGAACAGTGGAACAAGTCAGCATTGATACAATCTTCCAT
8539962 GAAGAACAGTA
260 GAAG-ACAGTA
8539973 GAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAA
1 GAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAA
8540013 ACAGTAGAAC
Statistics
Matches: 252, Mismatches: 51, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
265 2 0.01
266 9 0.04
267 200 0.79
269 1 0.00
270 40 0.16
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (269 bp):
GAATGAATCAACATTTCCAGATCTGATTTTCCCTCAAGAAGTAGTGGAACAGATCCCTATTTTTC
CCAAATTTGATATTCCTTAAGGAATAGTAGAACAAATCTGTCTCAATTCAATCTTCCCTGAAGAA
TAGTGAAATGAATCAACATTTCCAGATCTAATTTTCCCACAAGAAGCAGCGAAACAAATCCCTCA
TTTTTCCAGATTCGATATTCCCTGAGGAACAGTGGAACAAGTCAGCATTGATACAATCTTCCATG
AAGACAGTA
Found at i:8541432 original size:29 final size:27
Alignment explanation
Indices: 8541355--8541430 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
8541345 CGAACCAGAA
*
8541355 TCTATTTTTTATTTATTTTAATTTGGC
1 TCTATATTTTATTTATTTTAATTTGGC
* * *
8541382 TATACAATTTTAGTTTATTTTAATTTAGTC
1 TCTA-TATTTTA-TTTATTTTAATTT-GGC
*
8541412 TCTATGTTTTATTTATTTT
1 TCTATATTTTATTTATTTT
8541431 TATTCTTTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
27 3 0.08
28 13 0.33
29 18 0.46
30 5 0.13
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64
Consensus pattern (27 bp):
TCTATATTTTATTTATTTTAATTTGGC
Found at i:8542288 original size:131 final size:131
Alignment explanation
Indices: 8542041--8542403 Score: 408
Period size: 131 Copynumber: 2.8 Consensus size: 131
8542031 TCGATAATGA
* * * * *
8542041 AAATAGTAATATCTCCTCATTTTGGTTGGAGTAATAAATGACTACTTTAGGGCATGAGAGGTCAT
1 AAATAGTGATATCTCTTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* * * * * * * * *
8542106 TTATTCTCGATTGGAAATAATCATATATCACCATTTTCTCTCAAGTTAATATTGATTTTTAAGAA
66 TTATTCTCGATTGGAAATCATTAGATATTATCAGTTTCACTCAAGTCAATATTGAATTTTAAGAA
8542171 G
131 G
* * *
8542172 GAATAGTGATATCTCTTCATTTTGATTAGAGTAATAAAAGACTGCTTTAAGGCATGAGAGGTCAT
1 AAATAGTGATATCTCTTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
*
8542237 TTATTCTCGATTGGAAATCATTAGATATTATTAGTTTCACTCGAA-TCAATATTGAATTTTAAGA
66 TTATTCTCGATTGGAAATCATTAGATATTATCAGTTTCACTC-AAGTCAATATTGAATTTTAAGA
*
8542301 CG
130 AG
* ** * * * * *
8542303 AAATAGTGATATCTCTTAATTTCAATTGGGGTAATAAATGATTGTTTTAAGGCATGAAATGTCAT
1 AAATAGTGATATCTCTTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* * * *
8542368 TTATTATTGAGT-GAAAACAATTAGATATTATC-GTTT
66 TTATTCTCGATTGGAAATC-ATTAGATATTATCAGTTT
8542404 TATCTCTTAA
Statistics
Matches: 195, Mismatches: 35, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
130 9 0.05
131 184 0.94
132 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.39
Consensus pattern (131 bp):
AAATAGTGATATCTCTTCATTTTGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
TTATTCTCGATTGGAAATCATTAGATATTATCAGTTTCACTCAAGTCAATATTGAATTTTAAGAA
G
Found at i:8544007 original size:131 final size:130
Alignment explanation
Indices: 8543863--8544209 Score: 437
Period size: 132 Copynumber: 2.6 Consensus size: 130
8543853 TTTTAATTTT
* * *
8543863 GATTGGAGTAATAAGTAACTACTCTAAGGCATGAAAGGTCATTTATTCTCGATTGGAAATAATTA
1 GATTGGAGTAATAAATGACTACT-TAAGGCATGAAAGGTCATTTATTCTCAATTGGAAATAATTA
* * * **
8543928 GATATTACAGTTTTCTCTCGAATCAATATTTATTTTTAAGATGAAATAACGATATCTATTTGTTT
65 GATATTACAGTTTTCTCTCGAATCAATATTGAATTTTAAGATGAAATAACGATATATATTCCTTT
8543993 C
130 C
* * * * **
8543994 GTTTGGAGTAATAAATGACTTCTTTAAGGAATGAGAGACCATTTATTCTCAATTGGAAATAATTA
1 GATTGGAGTAATAAATGACTAC-TTAAGGCATGAAAGGTCATTTATTCTCAATTGGAAATAATTA
* ** *
8544059 GATATTACCGTTTTTCTCTCGAATCAATATTGAATTTTAAGATGAAATAGTGATATATCTTCCTT
65 GATATTACAG-TTTTCTCTCGAATCAATATTGAATTTTAAGATGAAATAACGATATATATTCCTT
8544124 TC
129 TC
* * *
8544126 GATTAGAGTAATAATTGACTACTTGAAGGCAT-AAGAGGTCATTTTTTCTCAATTGGAAATAATT
1 GATTGGAGTAATAAATGACTACTT-AAGGCATGAA-AGGTCATTTATTCTCAATTGGAAATAATT
8544190 AGATATTATCA-TTTTCTCTC
64 AGATATTA-CAGTTTTCTCTC
8544210 TTAATTTTTT
Statistics
Matches: 183, Mismatches: 28, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
131 75 0.41
132 107 0.58
133 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (130 bp):
GATTGGAGTAATAAATGACTACTTAAGGCATGAAAGGTCATTTATTCTCAATTGGAAATAATTAG
ATATTACAGTTTTCTCTCGAATCAATATTGAATTTTAAGATGAAATAACGATATATATTCCTTTC
Found at i:8546120 original size:23 final size:22
Alignment explanation
Indices: 8546086--8546146 Score: 86
Period size: 23 Copynumber: 2.6 Consensus size: 22
8546076 ACCACATCAC
8546086 AGTATCGATACCATAGTAAAGGA
1 AGTATCG-TACCATAGTAAAGGA
*
8546109 AGTATCGCTACCACAGTAAAGGA
1 AGTATCG-TACCATAGTAAAGGA
8546132 AGTATCAGTACCATA
1 AGTATC-GTACCATA
8546147 CCTTGGGTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 33 0.97
24 1 0.03
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (22 bp):
AGTATCGTACCATAGTAAAGGA
Found at i:8547076 original size:22 final size:24
Alignment explanation
Indices: 8547049--8547102 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 24
8547039 TGAGATAGAA
8547049 TATATGTGATTACAT-GATAAATG
1 TATATGTGATTACATGGATAAATG
* * *
8547072 T-TATGAG-TTATATGGATACATG
1 TATATGTGATTACATGGATAAATG
8547094 TATATGTGA
1 TATATGTGA
8547103 CGAATTAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
21 5 0.21
22 13 0.54
23 6 0.25
ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41
Consensus pattern (24 bp):
TATATGTGATTACATGGATAAATG
Found at i:8555095 original size:24 final size:24
Alignment explanation
Indices: 8555038--8555096 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
8555028 TAGATAAGAT
*
8555038 ATCAGAACAAAATCCAGGTCAGCA
1 ATCAGAACAGAATCCAGGTCAGCA
8555062 ATCAGAACAGAATCCAGGTCAGCA
1 ATCAGAACAGAATCCAGGTCAGCA
8555086 ATCAGAACAGA
1 ATCAGAACAGA
8555097 TTTCAGATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.12
Consensus pattern (24 bp):
ATCAGAACAGAATCCAGGTCAGCA
Found at i:8557339 original size:20 final size:22
Alignment explanation
Indices: 8557314--8557353 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8557304 TGTTGTATAT
8557314 AGCCG-TTGGGGATG-TTTTGG
1 AGCCGTTTGGGGATGATTTTGG
8557334 AGCCGTTTGGGGATGATTTT
1 AGCCGTTTGGGGATGATTTT
8557354 TCTACTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.12, C:0.10, G:0.40, T:0.38
Consensus pattern (22 bp):
AGCCGTTTGGGGATGATTTTGG
Done.