Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 62
Found at i:8557586 original size:42 final size:42
Alignment explanation
Indices: 8557540--8557638 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
8557530 CGGTGTTTGA
* * *
8557540 GTGCATGGATGCACTGCATGG-TGCATCGATGCACTAGTACAG
1 GTGCATGGATGCACTACAGGGATGCATCGATGCACT-GCACAG
* **
8557582 GTGCATGGATGCACTACAGGGATGCATGGATGCACTGCAGGG
1 GTGCATGGATGCACTACAGGGATGCATCGATGCACTGCACAG
8557624 GTGCATGGATGCACT
1 GTGCATGGATGCACT
8557639 TTGACACCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 37 0.74
43 13 0.26
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.22
Consensus pattern (42 bp):
GTGCATGGATGCACTACAGGGATGCATCGATGCACTGCACAG
Found at i:8557609 original size:21 final size:20
Alignment explanation
Indices: 8557540--8557638 Score: 110
Period size: 21 Copynumber: 4.8 Consensus size: 20
8557530 CGGTGTTTGA
* *
8557540 GTGCATGGATGCACTGCATG
1 GTGCATGGATGCACTACAGG
*
8557560 GTGCATCGATGCACTAGTACA-G
1 GTGCATGGATGCAC---TACAGG
8557582 GTGCATGGATGCACTACAGG
1 GTGCATGGATGCACTACAGG
*
8557602 GATGCATGGATGCACTGCAGGG
1 G-TGCATGGATGCACTACA-GG
8557624 GTGCATGGATGCACT
1 GTGCATGGATGCACT
8557639 TTGACACCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
19 4 0.06
20 15 0.22
21 30 0.43
22 17 0.25
23 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.22
Consensus pattern (20 bp):
GTGCATGGATGCACTACAGG
Found at i:8557739 original size:29 final size:30
Alignment explanation
Indices: 8557707--8557775 Score: 97
Period size: 29 Copynumber: 2.3 Consensus size: 30
8557697 TAAACCTTTT
8557707 AAAAC-TTTGAATAAATTCAATT-AAGTCCA
1 AAAACATTT-AATAAATTCAATTCAAGTCCA
*
8557736 AAAACATTTTATAAATTCAATTCAAGTCCA
1 AAAACATTTAATAAATTCAATTCAAGTCCA
8557766 AAAACCATTT
1 AAAA-CATTT
8557776 TACCTTAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 17 0.47
30 14 0.39
31 5 0.14
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (30 bp):
AAAACATTTAATAAATTCAATTCAAGTCCA
Found at i:8557765 original size:30 final size:30
Alignment explanation
Indices: 8557717--8557777 Score: 106
Period size: 29 Copynumber: 2.0 Consensus size: 30
8557707 AAAACTTTGA
8557717 ATAAATTCAATTAAGTCCAAAAA-CATTTT
1 ATAAATTCAATTAAGTCCAAAAACCATTTT
8557746 ATAAATTCAATTCAAGTCCAAAAACCATTTT
1 ATAAATTCAATT-AAGTCCAAAAACCATTTT
8557777 A
1 A
8557778 CCTTAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 12 0.40
30 11 0.37
31 7 0.23
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (30 bp):
ATAAATTCAATTAAGTCCAAAAACCATTTT
Found at i:8559085 original size:19 final size:20
Alignment explanation
Indices: 8559042--8559089 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8559032 TCTAAATCCT
*
8559042 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
8559062 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
8559081 TTTTCAAAA
1 TTTTCAAAA
8559090 GAAAATCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:8560474 original size:20 final size:20
Alignment explanation
Indices: 8560449--8560488 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8560439 CGGTGTTTGA
* *
8560449 GTGCATGGATGCACTGCATG
1 GTGCATCGATGCACTACATG
8560469 GTGCATCGATGCACTACATG
1 GTGCATCGATGCACTACATG
8560489 AAAGAATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (20 bp):
GTGCATCGATGCACTACATG
Found at i:8560605 original size:29 final size:30
Alignment explanation
Indices: 8560573--8560636 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
8560563 AAAACCTTTT
8560573 AAAACATTGAATAAATTCAATT-AAGTCCA
1 AAAACATTGAATAAATTCAATTCAAGTCCA
***
8560602 AAAACATTTTGTAAATTCAATTCAAGTCCA
1 AAAACATTGAATAAATTCAATTCAAGTCCA
8560632 AAAAC
1 AAAAC
8560637 CATTTTGCCT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (30 bp):
AAAACATTGAATAAATTCAATTCAAGTCCA
Found at i:8560631 original size:30 final size:30
Alignment explanation
Indices: 8560584--8560643 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
8560574 AAACATTGAA
8560584 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
8560613 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
8560644 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:8561166 original size:5 final size:5
Alignment explanation
Indices: 8561117--8561146 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
8561107 ACGGGTCAAT
*
8561117 GGGTC GGGTC GGGTC GGGTC AGGTC GGGTC
1 GGGTC GGGTC GGGTC GGGTC GGGTC GGGTC
8561147 ATATCAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.03, C:0.20, G:0.57, T:0.20
Consensus pattern (5 bp):
GGGTC
Found at i:8563260 original size:24 final size:24
Alignment explanation
Indices: 8563233--8563299 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
8563223 CAGAAAACAA
8563233 AACATAATTTAGATCAGATATTAG
1 AACATAATTTAGATCAGATATTAG
** *
8563257 AACATAATCCAGGTCAGGA-ATTAG
1 AACATAATTTAGATCA-GATATTAG
*
8563281 AACA-GATTTATGATCAGAT
1 AACATAATTTA-GATCAGAT
8563300 GTCATAACCG
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
23 5 0.15
24 26 0.79
25 2 0.06
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.28
Consensus pattern (24 bp):
AACATAATTTAGATCAGATATTAG
Found at i:8571789 original size:13 final size:13
Alignment explanation
Indices: 8571768--8571797 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8571758 CACATGAAGC
*
8571768 GAATGTTGTAAGT
1 GAATATTGTAAGT
8571781 GAATATTGTAAGT
1 GAATATTGTAAGT
8571794 GAAT
1 GAAT
8571798 GAATGGAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (13 bp):
GAATATTGTAAGT
Found at i:8574310 original size:14 final size:15
Alignment explanation
Indices: 8574285--8574313 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8574275 TTCCCTTTTC
8574285 TTTATATTTTTTATT
1 TTTATATTTTTTATT
8574300 TTTAT-TTTTTTATT
1 TTTATATTTTTTATT
8574314 ATTTTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTATATTTTTTATT
Found at i:8576406 original size:131 final size:131
Alignment explanation
Indices: 8576172--8576412 Score: 297
Period size: 131 Copynumber: 1.8 Consensus size: 131
8576162 GAGAATAGTA
* * * * *
8576172 ATATCTTTTCATTTCGGTTGAAGTAATAAATGTCTGCTTCAAGGCATGAGAGTTCATTTATTCTC
1 ATATCTCTTCATTTCGATTGAAGCAATAAATGTCTGCTTCAAAGCATGAGAGGTCATTTATTCTC
* *
8576237 AATTAGAAATAATTCGATATTACTATTTTCTCTCGAATCAATATTGATTTTTAAGATGGAATAAT
66 AATTAGAAATAATTAGATATTACTATTTTCACTCGAATCAATATTGATTTTTAAGATGGAATAAT
8576302 G
131 G
* * **
8576303 ATATCTCTTCATTTCGATTGGAGCAATAAATGAT-TGCTTTAAATTATGAGAGGTCATTTATTCT
1 ATATCTCTTCATTTCGATTGAAGCAATAAATG-TCTGCTTCAAAGCATGAGAGGTCATTTATTCT
* * * * * *
8576367 CGATTGGAAATCATTAGATATTA-TGGTTTTCACTTGAATCGATATT
65 CAATTAGAAATAATTAGATATTACT-ATTTTCACTCGAATCAATATT
8576413 TATCTCATCA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
130 1 0.01
131 89 0.98
132 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.41
Consensus pattern (131 bp):
ATATCTCTTCATTTCGATTGAAGCAATAAATGTCTGCTTCAAAGCATGAGAGGTCATTTATTCTC
AATTAGAAATAATTAGATATTACTATTTTCACTCGAATCAATATTGATTTTTAAGATGGAATAAT
G
Found at i:8576505 original size:109 final size:109
Alignment explanation
Indices: 8576304--8576505 Score: 264
Period size: 109 Copynumber: 1.9 Consensus size: 109
8576294 GGAATAATGA
* * ** *
8576304 TATCTCTTCATTTCGATTGGAGCAATAAATGATTGCTTTAAATTATGAGAGGTCATTTATTCTCG
1 TATCTCATCATTTCGATTGGAGCAATAAATGAATGCTTTAAAGCATGAAAGGTCATTTATTCTCG
* *
8576369 ATTGGAAATCATTAGATATTATGGTTTTCACTTGAATCGATATT
66 ATTGGAAATAATTAGATATTATCGTTTTCACTTGAATCGATATT
* * *
8576413 TATCTCATCATTTCGATTGGAGTAATAGATGAATG-TTATAAGGCATGAAAGGTCATTTATTCTC
1 TATCTCATCATTTCGATTGGAGCAATAAATGAATGCTT-TAAAGCATGAAAGGTCATTTATTCTC
* *
8576477 GGTTGGGAATAATTAGACT-TTATCGTTTT
65 GATTGGAAATAATTAGA-TATTATCGTTTT
8576506 ATCTCTTAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
108 2 0.03
109 76 0.96
110 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.41
Consensus pattern (109 bp):
TATCTCATCATTTCGATTGGAGCAATAAATGAATGCTTTAAAGCATGAAAGGTCATTTATTCTCG
ATTGGAAATAATTAGATATTATCGTTTTCACTTGAATCGATATT
Found at i:8578063 original size:295 final size:294
Alignment explanation
Indices: 8577525--8578117 Score: 1080
Period size: 295 Copynumber: 2.0 Consensus size: 294
8577515 ATGAAACACC
*
8577525 TAAAATTTCAAGAAAATTAAAAGGAATTTATTTTTATTTATAGAATATAGTAAGAGCCTAAAAGT
1 TAAAATATCAAGAAAATTAAAAGGAATTTATTTTTATTTATAGAATATAGTAAGAGCCTAAAAGT
*
8577590 GTTTAAAATAATATTTGACATTGTTGAAAATTTTTATTTTTCGTCCATTAAAATTTTGAAGGAAA
66 GTTTAAAATAATATTTGACATTGTTGAAAATTTTTATTTTTCATCCATTAAAATTTTGAAGGAAA
*
8577655 ATCAAATTTTGGTTTCCTCCAATGTAATTTTCTTATTTTATTTTATTTAAAAGAAAAAGAAAATC
131 ATCAAATTTTGGTCTCCTCCAATGTAATTTTCTTATTTTATTTTATTTAAAAGAAAAAGAAAATC
* *
8577720 ATGATTTTTTATAGTATTGAAATAAAAACTCGAAAATAATTAAATTTGTATGTATGCTAATGATA
196 ATGATTTTTTATAATATTGAAATAAAAACTAGAAAATAATTAAATTTGTATGTATGCTAATGATA
8577785 TATTATCATTATA-TTTTTAGTTCTAAGCTATTA
261 TATTATCATTATATTTTTTAGTTCTAAGCTATTA
* * *
8577818 TAAAATATCGAGAAAATTAATAGGAATTTATTTTTATTTATAGAATATAGTAAGAGCCTAAAGGT
1 TAAAATATCAAGAAAATTAAAAGGAATTTATTTTTATTTATAGAATATAGTAAGAGCCTAAAAGT
8577883 GTTTAAAATAATATTTGACATTGTTTTGAAAATTTTTATTTTTCATCCATTAAAATTTTGAAGGA
66 GTTTAAAATAATATTTGACATTG--TTGAAAATTTTTATTTTTCATCCATTAAAATTTTGAAGGA
8577948 AAATCAAATTTTGGTCTCCTCCAATGTAATTTTCTTATTTTATTTTATTTAAAAGAAAAAGAAAA
129 AAATCAAATTTTGGTCTCCTCCAATGTAATTTTCTTATTTTATTTTATTTAAAAGAAAAAGAAAA
*
8578013 TCATGATTTTTTATAATATTGAAATAAAAACTATAAAATAATTAAATTTGTATGTATGCTAATGA
194 TCATGATTTTTTATAATATTGAAATAAAAACTAGAAAATAATTAAATTTGTATGTATGCTAATGA
8578078 TATATTATCATTATATTTTTTAGTTCTAAGCTATTA
259 TATATTATCATTATATTTTTTAGTTCTAAGCTATTA
8578114 TAAA
1 TAAA
8578118 TAAAATAATA
Statistics
Matches: 288, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
293 84 0.29
295 180 0.62
296 24 0.08
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (294 bp):
TAAAATATCAAGAAAATTAAAAGGAATTTATTTTTATTTATAGAATATAGTAAGAGCCTAAAAGT
GTTTAAAATAATATTTGACATTGTTGAAAATTTTTATTTTTCATCCATTAAAATTTTGAAGGAAA
ATCAAATTTTGGTCTCCTCCAATGTAATTTTCTTATTTTATTTTATTTAAAAGAAAAAGAAAATC
ATGATTTTTTATAATATTGAAATAAAAACTAGAAAATAATTAAATTTGTATGTATGCTAATGATA
TATTATCATTATATTTTTTAGTTCTAAGCTATTA
Found at i:8578206 original size:13 final size:13
Alignment explanation
Indices: 8578188--8578212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8578178 ATGAGAATTT
8578188 AAATTTTATATAC
1 AAATTTTATATAC
8578201 AAATTTTATATA
1 AAATTTTATATA
8578213 TTGCGAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTTTATATAC
Found at i:8578242 original size:2 final size:2
Alignment explanation
Indices: 8578235--8578286 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
8578225 ATTTAATTTT
8578235 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8578277 TA TA TA -A TA T
1 TA TA TA TA TA T
8578287 CAGATTTTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8584412 original size:21 final size:20
Alignment explanation
Indices: 8584380--8584419 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8584370 ATAATAAATA
*
8584380 TAATAACGAAAAAAATAATT
1 TAATAAAGAAAAAAATAATT
*
8584400 TAATAAAGTAAAATAATAAT
1 TAATAAAG-AAAAAAATAAT
8584420 AATGTAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
TAATAAAGAAAAAAATAATT
Found at i:8584421 original size:16 final size:16
Alignment explanation
Indices: 8584400--8584437 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8584390 AAAAATAATT
8584400 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
8584416 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
8584432 T-ATAAA
1 TAATAAA
8584438 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:8584682 original size:11 final size:11
Alignment explanation
Indices: 8584600--8584683 Score: 55
Period size: 11 Copynumber: 7.3 Consensus size: 11
8584590 TTATAAACGT
*
8584600 TAATAGTAAAA
1 TAATATTAAAA
*
8584611 TAATAATAAATA
1 TAATATTAAA-A
8584623 TAATAGTTATAAA
1 TAATA-TTA-AAA
*
8584636 TATATATATATAA
1 TA-ATAT-TAAAA
8584649 TAACT-TTAAAA
1 TAA-TATTAAAA
*
8584660 -AACATTAAAA
1 TAATATTAAAA
*
8584670 TAATATTAGAA
1 TAATATTAAAA
8584681 TAA
1 TAA
8584684 AAATAATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
10 8 0.14
11 24 0.41
12 8 0.14
13 11 0.19
14 7 0.12
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (11 bp):
TAATATTAAAA
Found at i:8585180 original size:37 final size:37
Alignment explanation
Indices: 8585128--8585219 Score: 98
Period size: 36 Copynumber: 2.5 Consensus size: 37
8585118 GTGCTTGTGG
* *
8585128 ATCCTATCTTGAGGAGTTTAAAACATAGAAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAAACATAGAAAAATTCT
* * * * *
8585165 ATCCTATTTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTTAGGAGTTTAAAACATAGAAAAATTCT
8585201 ATCCTATTTTT-GAGAGTTT
1 ATCCTATTTTTAG-GAGTTT
8585220 GAATCCTAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
35 1 0.02
36 29 0.63
37 16 0.35
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAAACATAGAAAAATTCT
Found at i:8585206 original size:36 final size:37
Alignment explanation
Indices: 8585159--8585228 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
8585149 AACATAGAAA
8585159 AATTCTATCCTATTTTT-AGGAG-TTGAATCCTAGCAG
1 AATTCTATCCTATTTTTGA-GAGTTTGAATCCTAGCAG
8585195 AATTCTATCCTATTTTTGAGAGTTTGAATCCTAG
1 AATTCTATCCTATTTTTGAGAGTTTGAATCCTAG
8585229 TAGGACGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
36 20 0.62
37 12 0.38
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (37 bp):
AATTCTATCCTATTTTTGAGAGTTTGAATCCTAGCAG
Found at i:8585936 original size:106 final size:107
Alignment explanation
Indices: 8585707--8586149 Score: 431
Period size: 109 Copynumber: 4.2 Consensus size: 107
8585697 TATCCTCCGC
* * * * *
8585707 TGTGAAGTTGAGCTTGTGCTGTCTCGAGT-C-TAATATCCTTCG-CTGTGAAGTTGAAATTGACT
1 TGTGAAGTTGAACTTGTGTTGTCTCGAGTGCACAATATCCTCCGTC-GTGAAGTTGAAATTGGCT
* * *
8585769 CTG-AA-CG--AAATCTT-GTTGACAATCAGCCGTCCCTTCGT
65 CTGAAATTGAAAAATGTTCGTTGACAACCAGCCGTCCCTTCGT
* *
8585807 TGTGAAGTTGAACTTGTGTTGTCTCGAGT-C-CAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
1 TGTGAAGTTGAACTTGTGTTGTCTCGAGTGCACAATATCCTCCGTCGTGAAGTTGAAATTGGCTC
* * *
8585870 TGAAATTTGAAAAATGTTTGTTGACAACCAGCTGTCCCTTCAT
66 TGAAA-TTGAAAAATGTTCGTTGACAACCAGCCGTCCCTTCGT
* * * *
8585913 TGTGAAGTTGAACTTGTATTGTCTCGAGTGGCACGATATCCTCCGTCGTGGAGTTGAAA-TCGCG
1 TGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCACAATATCCTCCGTCGTGAAGTTGAAATTGGC-
** * * * *
8585977 GATGAAACTGAAAAGTTGTTCGTTGACAACTAACCGTCCCTTCGT
64 TCTGAAATTGAAAA-ATGTTCGTTGACAACCAGCCGTCCCTTCGT
* * * * * * *
8586022 TGTGAAGTTGGACTTGTGTTTTCTCGGGTAGCACGATATCCTCCGTCGTGGAGTTGAAATCGGTT
1 TGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCACAATATCCTCCGTCGTGAAGTTGAAATTGGCT
* * ** *
8586087 CTGGAATTGGGAAGTTGTTCGTTGACAACCAGCCGTCCCTACGT
65 CTGAAATT-GAAAAATGTTCGTTGACAACCAGCCGTCCCTTCGT
8586131 TGTGAAGTTGAACTTGTGT
1 TGTGAAGTTGAACTTGTGT
8586150 CTAGCTAAAA
Statistics
Matches: 286, Mismatches: 43, Indels: 19
0.82 0.12 0.05
Matches are distributed among these distances:
100 59 0.21
101 2 0.01
103 1 0.00
105 6 0.02
106 49 0.17
108 10 0.03
109 155 0.54
110 4 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (107 bp):
TGTGAAGTTGAACTTGTGTTGTCTCGAGTGCACAATATCCTCCGTCGTGAAGTTGAAATTGGCTC
TGAAATTGAAAAATGTTCGTTGACAACCAGCCGTCCCTTCGT
Found at i:8586016 original size:109 final size:108
Alignment explanation
Indices: 8585783--8586149 Score: 454
Period size: 109 Copynumber: 3.4 Consensus size: 108
8585773 ACGAAATCTT
* *
8585783 GTTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-C-CAATATCCT
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCACGATATCCT
* * * * * *
8585846 TCGTTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAA-ATGTTT
66 CCGTCGTGGAGTTGAAATCGGCTCTGAAA-TTGAAAAGTTGTTC
* * *
8585889 GTTGACAACCAGCTGTCCCTTCATTGTGAAGTTGAACTTGTATTGTCTCGAGTGGCACGATATCC
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCACGATATCC
** *
8585954 TCCGTCGTGGAGTTGAAATC-GCGGATGAAACTGAAAAGTTGTTC
65 TCCGTCGTGGAGTTGAAATCGGC-TCTGAAATTGAAAAGTTGTTC
* * * * *
8585998 GTTGACAACTAACCGTCCCTTCGTTGTGAAGTTGGACTTGTGTTTTCTCGGGTAGCACGATATCC
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCACGATATCC
* * **
8586063 TCCGTCGTGGAGTTGAAATCGGTTCTGGAATTGGGAAGTTGTTC
65 TCCGTCGTGGAGTTGAAATCGGCTCTGAAATTGAAAAGTTGTTC
*
8586107 GTTGACAACCAGCCGTCCCTACGTTGTGAAGTTGAACTTGTGT
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGT
8586150 CTAGCTAAAA
Statistics
Matches: 221, Mismatches: 34, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
106 49 0.22
108 9 0.04
109 162 0.73
110 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (108 bp):
GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCACGATATCCT
CCGTCGTGGAGTTGAAATCGGCTCTGAAATTGAAAAGTTGTTC
Found at i:8586738 original size:55 final size:53
Alignment explanation
Indices: 8586671--8586773 Score: 125
Period size: 55 Copynumber: 1.9 Consensus size: 53
8586661 AGCGACATTA
* * *
8586671 TTTGTTTCAAGGGAAACGATTTCAAAGATATCTGTTGTTTCATGAGAAACGAAAT
1 TTTGTTTCAAGGGAAACAAATTCAAAGAT-TCTG-TGTTTCAAGAGAAACGAAAT
* * * *
8586726 TTTGTTTTAAGGGAGATAAATTCAAAGATTTTGTGTTTCAAGAGAAAC
1 TTTGTTTCAAGGGAAACAAATTCAAAGATTCTGTGTTTCAAGAGAAAC
8586774 TGTCTCATGG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 14 0.34
54 3 0.07
55 24 0.59
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (53 bp):
TTTGTTTCAAGGGAAACAAATTCAAAGATTCTGTGTTTCAAGAGAAACGAAAT
Found at i:8586806 original size:67 final size:67
Alignment explanation
Indices: 8586726--8586884 Score: 232
Period size: 67 Copynumber: 2.4 Consensus size: 67
8586716 GAAACGAAAT
* *
8586726 TTTGTTTTAAGGGAGATA-AAT-TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGAC
1 TTTGTTTCAAGGGA-A-ACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
8586789 AAAA
64 AAAA
* *
8586793 TTTGTTTCGAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
1 TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
8586858 AA
66 AA
**
8586860 TTTGTTTCAAGGGAAATTATCTCAA
1 TTTGTTTCAAGGGAAACAATCTCAA
8586885 GAGAGACGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
65 1 0.01
66 4 0.05
67 78 0.94
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (67 bp):
TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
AA
Found at i:8586978 original size:37 final size:37
Alignment explanation
Indices: 8586927--8587337 Score: 253
Period size: 37 Copynumber: 11.9 Consensus size: 37
8586917 TCAATGTTTA
*
8586927 TGTTTC-AGGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGG-GAAACTGTCTCAAGAGAGACAAAATTT
*
8586964 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * **
8587000 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
8587028 ATGTTTCAAGAGAAACTGTCTCAATG-GAGACGAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAA-GAGAGACAAAATTT
* *
8587066 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
8587102 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * *
8587130 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
8587168 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
8587204 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * * *
8587232 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAAATT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
*
8587270 TGTTTCAAGGGAAACTGTCTCAAGAGAGAC-AAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
8587306 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
8587338 TGGTGAGCAC
Statistics
Matches: 281, Mismatches: 53, Indels: 80
0.68 0.13 0.19
Matches are distributed among these distances:
27 3 0.01
28 4 0.01
29 39 0.14
30 11 0.04
32 2 0.01
33 2 0.01
34 2 0.01
35 8 0.03
36 82 0.29
37 115 0.41
38 13 0.05
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:8586999 original size:102 final size:102
Alignment explanation
Indices: 8586826--8587319 Score: 846
Period size: 102 Copynumber: 4.9 Consensus size: 102
8586816 AAAGGTTTTG
*
8586826 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAATTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
8586890 ACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
8586927 TGTTTCAGGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
8586992 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
8587029 TGTTTCAAGAGAAACTGTCTCAATGGAGACGAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
8587094 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
8587131 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
8587196 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
8587233 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* **
8587298 ACAAAGTTTGTTTCAAGGGAAA
66 ACAAAATTCATTTCAAGGGAAA
8587320 CTGTCTCAAG
Statistics
Matches: 374, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
101 33 0.09
102 341 0.91
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:8588828 original size:14 final size:14
Alignment explanation
Indices: 8588809--8588872 Score: 67
Period size: 14 Copynumber: 4.4 Consensus size: 14
8588799 CCCTTTTTTA
8588809 TTTTTGTTCTTTCT
1 TTTTTGTTCTTTCT
*
8588823 TTTTTGTTCTTTTT
1 TTTTTGTTCTTTCT
*
8588837 TGTTCTTGTTTTTTCCT
1 T-TT-TTGTTCTTT-CT
8588854 TTTTTGCTTCTTT-T
1 TTTTTG-TTCTTTCT
8588868 TTTTT
1 TTTTT
8588873 TCTTTTTGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
14 20 0.48
15 5 0.12
16 15 0.36
17 2 0.05
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (14 bp):
TTTTTGTTCTTTCT
Found at i:8588834 original size:10 final size:10
Alignment explanation
Indices: 8588819--8588879 Score: 70
Period size: 10 Copynumber: 5.8 Consensus size: 10
8588809 TTTTTGTTCT
8588819 TTCTTTTTTG
1 TTCTTTTTTG
8588829 TTCTTTTTTG
1 TTCTTTTTTG
8588839 TTCTTGTTTT-
1 TTCTT-TTTTG
8588849 TTCCTTTTTTG
1 TT-CTTTTTTG
*
8588860 CTTCTTTTTTTT
1 -TTC-TTTTTTG
8588872 TTCTTTTT
1 TTCTTTTT
8588880 GCCCTTTTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
10 26 0.58
11 11 0.24
12 8 0.18
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (10 bp):
TTCTTTTTTG
Found at i:8588848 original size:22 final size:20
Alignment explanation
Indices: 8588819--8588879 Score: 77
Period size: 22 Copynumber: 2.9 Consensus size: 20
8588809 TTTTTGTTCT
*
8588819 TTCTTTTTTGTTCTTTTTTG
1 TTCTTTTTTTTTCTTTTTTG
*
8588839 TTCTTGTTTTTTCCTTTTTTG
1 TTCTT-TTTTTTTCTTTTTTG
8588860 CTTCTTTTTTTTTTCTTTTT
1 -TTC-TTTTTTTTTCTTTTT
8588880 GCCCTTTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.14
21 13 0.37
22 15 0.43
23 2 0.06
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (20 bp):
TTCTTTTTTTTTCTTTTTTG
Found at i:8588879 original size:30 final size:29
Alignment explanation
Indices: 8588803--8588893 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 29
8588793 TTTGTTCCCT
*
8588803 TTTTTATTTTTGTTCTTT-CTTTTTTGTTC
1 TTTTT-TTTTTGTTTTTTCCTTTTTTGTTC
8588832 TTTTTTGTTCTTGTTTTTTCCTTTTTTGCTTC
1 TTTTTT-TT-TTGTTTTTTCCTTTTTTG-TTC
* * *
8588864 TTTTTTTTTTCTTTTTGCCCTTTTTGTTC
1 TTTTTTTTTTGTTTTTTCCTTTTTTGTTC
8588893 T
1 T
8588894 GATTGAATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
28 1 0.02
29 11 0.20
30 23 0.43
31 10 0.19
32 9 0.17
ACGTcount: A:0.01, C:0.14, G:0.08, T:0.77
Consensus pattern (29 bp):
TTTTTTTTTTGTTTTTTCCTTTTTTGTTC
Found at i:8592235 original size:21 final size:21
Alignment explanation
Indices: 8592199--8592250 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
8592189 ATATATATAT
*
8592199 ATAATAAATATAATAACGAAAA
1 ATAAT-AATATAATAAAGAAAA
* *
8592221 ATAATAATTTAATAAAGTAAA
1 ATAATAATATAATAAAGAAAA
8592242 ATAATAATA
1 ATAATAATA
8592251 ATGTAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (21 bp):
ATAATAATATAATAAAGAAAA
Found at i:8592251 original size:16 final size:16
Alignment explanation
Indices: 8592230--8592267 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8592220 AATAATAATT
8592230 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
8592246 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
8592262 T-ATAAA
1 TAATAAA
8592268 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:8592479 original size:23 final size:21
Alignment explanation
Indices: 8592424--8592483 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
8592414 AAAATATATT
*
8592424 TATATATGT-TAATAGTAAAA
1 TATATATATATAATAGTAAAA
*
8592444 TAATAATAAATATAATAGTTATAAA
1 T-AT-ATATATATAATAG-TA-AAA
8592469 TATATATATATAATA
1 TATATATATATAATA
8592484 ACTTTAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 1 0.03
21 2 0.06
22 4 0.12
23 17 0.53
24 4 0.12
25 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
TATATATATATAATAGTAAAA
Found at i:8592515 original size:11 final size:11
Alignment explanation
Indices: 8592433--8592516 Score: 55
Period size: 11 Copynumber: 7.3 Consensus size: 11
8592423 TTATATATGT
*
8592433 TAATAGTAAAA
1 TAATATTAAAA
*
8592444 TAATAATAAATA
1 TAATATTAAA-A
8592456 TAATAGTTATAAA
1 TAATA-TTA-AAA
*
8592469 TATATATATATAA
1 TA-ATAT-TAAAA
8592482 TAACT-TTAAAA
1 TAA-TATTAAAA
*
8592493 -AACATTAAAA
1 TAATATTAAAA
*
8592503 TAATATTAGAA
1 TAATATTAAAA
8592514 TAA
1 TAA
8592517 AAATAATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
10 8 0.14
11 24 0.41
12 8 0.14
13 11 0.19
14 7 0.12
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (11 bp):
TAATATTAAAA
Found at i:8593036 original size:36 final size:37
Alignment explanation
Indices: 8592990--8593065 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 37
8592980 GTTTAAAACA
8592990 TAGCAAAATTCTATCATATTTTT-AGGAG-TTGAATCC
1 TAGCAAAATTCTATCATATTTTTGA-GAGTTTGAATCC
* *
8593026 TAGCAGAATTCTATCCTATTTTTGAGAGTTTGAATCC
1 TAGCAAAATTCTATCATATTTTTGAGAGTTTGAATCC
8593063 TAG
1 TAG
8593066 TAGGACGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 24 0.67
37 12 0.33
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.39
Consensus pattern (37 bp):
TAGCAAAATTCTATCATATTTTTGAGAGTTTGAATCC
Found at i:8593714 original size:90 final size:90
Alignment explanation
Indices: 8593593--8593769 Score: 282
Period size: 90 Copynumber: 2.0 Consensus size: 90
8593583 TAATCCCGAA
* * * * * *
8593593 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCATAATATGAC
*
8593658 TAGTGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
8593683 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCATAATATGAC
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCATAATATGAC
*
8593748 TAGGGTAACTTGGCTATAAAAG
66 TAGGGTAACTTGGATATAAAAG
8593770 CGTGTGTTAG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (90 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCATAATATGAC
TAGGGTAACTTGGATATAAAAGGAT
Found at i:8604952 original size:22 final size:21
Alignment explanation
Indices: 8604920--8605109 Score: 101
Period size: 22 Copynumber: 9.0 Consensus size: 21
8604910 GTGCCATCAG
8604920 TAAGTCTTTCGAGCATGATGA
1 TAAGTCTTTCGAGCATGATGA
* * *
8604941 TGAAGTCCTTCGGGCCATCA-G-
1 T-AAGTCTTTCGAG-CATGATGA
8604962 TAAGTCTTTCGAGCATGATGA
1 TAAGTCTTTCGAGCATGATGA
* * *
8604983 TGAAATCCTTCGAGCCATCA-G-
1 T-AAGTCTTTCGAG-CATGATGA
8605004 TAAGTCTTTCGAGCATGATGA
1 TAAGTCTTTCGAGCATGATGA
* * * *
8605025 TTAAATCATTCGGGTCATTA-G-
1 -TAAGTCTTTCGAG-CATGATGA
*
8605046 TAAGTCTTTCAAGCATGATGA
1 TAAGTCTTTCGAGCATGATGA
* * *
8605067 TTACA-TCATTCGGGTCATCA-G-
1 -TA-AGTCTTTCGAG-CATGATGA
*
8605088 TAAGTCTTTCAAGCATGATGA
1 TAAGTCTTTCGAGCATGATGA
8605109 T
1 T
8605110 TAAATCATTC
Statistics
Matches: 122, Mismatches: 29, Indels: 36
0.65 0.16 0.19
Matches are distributed among these distances:
19 17 0.14
20 41 0.34
21 5 0.04
22 42 0.34
23 17 0.14
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (21 bp):
TAAGTCTTTCGAGCATGATGA
Found at i:8605016 original size:20 final size:20
Alignment explanation
Indices: 8604912--8605017 Score: 90
Period size: 20 Copynumber: 5.1 Consensus size: 20
8604902 ATCAGTAAGT
8604912 GCCATCAGTAAGTCTTTCGA
1 GCCATCAGTAAGTCTTTCGA
* * *
8604932 G-CATGATGATGAAGTCCTTCGG
1 GCCATCA-G-T-AAGTCTTTCGA
8604954 GCCATCAGTAAGTCTTTCGA
1 GCCATCAGTAAGTCTTTCGA
* * *
8604974 G-CATGATGATGAAATCCTTCGA
1 GCCATCA-G-T-AAGTCTTTCGA
8604996 GCCATCAGTAAGTCTTTCGA
1 GCCATCAGTAAGTCTTTCGA
8605016 GC
1 GC
8605018 ATGATGATTA
Statistics
Matches: 66, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
19 8 0.12
20 24 0.36
21 4 0.06
22 22 0.33
23 8 0.12
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (20 bp):
GCCATCAGTAAGTCTTTCGA
Found at i:8605125 original size:42 final size:42
Alignment explanation
Indices: 8604914--8605181 Score: 317
Period size: 42 Copynumber: 6.4 Consensus size: 42
8604904 CAGTAAGTGC
* * * *
8604914 CATCAGTAAGTCTTTCGAGCATGATGATGAAGTCCTTCGGGC
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
* * * *
8604956 CATCAGTAAGTCTTTCGAGCATGATGATGAAATCCTTCGAGC
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
8604998 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
* * *
8605040 CATTAGTAAGTCTTTCAAGCATGATGATTACATCATTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
* *
8605082 CATCAGTAAGTCTTTCAAGCATGATGATTAAATCATTCAGGT
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
*** * * *
8605124 CATTTTTGAA-TCTTTCGAGCAAGAT-AATAAATCCTTCGGGT
1 CATCAGT-AAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
*
8605165 CATCCA-TAAGTCCTTCG
1 CAT-CAGTAAGTCTTTCG
8605182 GGTAGGATGT
Statistics
Matches: 200, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
40 2 0.01
41 23 0.12
42 173 0.87
43 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (42 bp):
CATCAGTAAGTCTTTCGAGCATGATGATTAAATCATTCGGGT
Found at i:8605687 original size:53 final size:53
Alignment explanation
Indices: 8605602--8605885 Score: 336
Period size: 53 Copynumber: 5.4 Consensus size: 53
8605592 AGAATCACAC
* * * * *
8605602 CAGAAGATTGTTTGAGTTCTATTCCTTGAAGCAAGAGAGAGCGAACTCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAAG
* * * * *
8605655 CAGAAGATTGTTCGAGTTCTACTCCCTAAAGCAAGAGGGAGAGAACCCATAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAAG
* *
8605708 CAGAAGATTGTTCGAGTTTTATTCCCTGAAGCAAGAG-GAAGCGAACCCGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGAG-AGCGAACCCGTAAG
* * *
8605761 CAGAAGATTGTTCGAGTTGTACTCCCTGAAGCAAGAGAGAGTGAACCCGTAAA
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAAG
* * * * * ***
8605814 CAGAAAATTGTTCGAGTTCTACTCCCTGAAGCAATAGGGAGCAAACCCATTTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAAG
*
8605867 TAGAAGATTGTTCGAGTTC
1 CAGAAGATTGTTCGAGTTC
8605886 CTTAATCCCA
Statistics
Matches: 199, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
52 1 0.01
53 197 0.99
54 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAAG
Found at i:8607544 original size:3 final size:3
Alignment explanation
Indices: 8607536--8607590 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
8607526 TGTCCATAGG
8607536 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8607584 TTA TTA T
1 TTA TTA T
8607591 GAAAAAAATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8608774 original size:55 final size:54
Alignment explanation
Indices: 8608696--8608842 Score: 161
Period size: 54 Copynumber: 2.7 Consensus size: 54
8608686 AAATCCATAG
* * * *
8608696 AATTCATCATGAGTTGATAAATAACCGTACATGCACTATGTGCGTAAATCTACAA
1 AATTCATCATGAGTTGATGAATAACCGTATATGCACTATGTG-GTAAACCCACAA
* * * * * **
8608751 AATTCATCATGAGTTGATGAATAACGGTATAGGCACGATGTGTTCAACCCATGA
1 AATTCATCATGAGTTGATGAATAACCGTATATGCACTATGTGGTAAACCCACAA
*
8608805 AATTCATCATGAATTGATGAACT-ACCGTATATGCACTA
1 AATTCATCATGAGTTGATGAA-TAACCGTATATGCACTA
8608843 CGTGTGCATC
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
54 38 0.50
55 38 0.50
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (54 bp):
AATTCATCATGAGTTGATGAATAACCGTATATGCACTATGTGGTAAACCCACAA
Found at i:8609083 original size:81 final size:81
Alignment explanation
Indices: 8608989--8609238 Score: 367
Period size: 81 Copynumber: 3.1 Consensus size: 81
8608979 TAGTCTAAAA
* * * * *
8608989 TAAAACAATAATGGTCTAACTGTGCAAATGGCATAAAGTTGTCAATTATGCCAGTTAGATGAATG
1 TAAAAGAATAATGGTCTAACTGTGCAATTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAATG
*
8609054 GTTAAAT-GTCGTTGAG
66 GTTAAATACT-GTTGAG
* * *
8609070 TAAAAGAATAATGGCCTAACTGTGCAATTGGTAGAAAGGTGTCAATTATGCTAGTTAAATGAATG
1 TAAAAGAATAATGGTCTAACTGTGCAATTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAATG
*
8609135 GTTAAATACTGCTGAG
66 GTTAAATACTGTTGAG
* * *
8609151 TAAAAGAATAATGGTCAAACTGTGCAATTGGTAGAAAGGTGTCAATTATACCAGTTAGATGAACG
1 TAAAAGAATAATGGTCTAACTGTGCAATTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAATG
8609216 GTTAAATACTGTTGAG
66 GTTAAATACTGTTGAG
8609232 TAAAAGA
1 TAAAAGA
8609239 TGAAAGGTTA
Statistics
Matches: 151, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
81 150 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (81 bp):
TAAAAGAATAATGGTCTAACTGTGCAATTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAATG
GTTAAATACTGTTGAG
Found at i:8609249 original size:29 final size:29
Alignment explanation
Indices: 8609207--8609267 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
8609197 TATACCAGTT
* * *
8609207 AGATGAACGGTTAAATACTGTTGAGTAAA
1 AGATGAAAGGTTAAACACTGTTGAATAAA
8609236 AGATGAAAGGTTAAACACTGTTGAATAAA
1 AGATGAAAGGTTAAACACTGTTGAATAAA
8609265 AGA
1 AGA
8609268 ATAATGGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.25
Consensus pattern (29 bp):
AGATGAAAGGTTAAACACTGTTGAATAAA
Found at i:8609332 original size:110 final size:110
Alignment explanation
Indices: 8609128--8609348 Score: 239
Period size: 110 Copynumber: 2.0 Consensus size: 110
8609118 TGCTAGTTAA
* * * * ** *
8609128 ATGAATGGTTAAATACTGCTGAGTAAAAGAATAATGGTCAAACTGTGCAATTGGTAGAAAGGTGT
1 ATGAAAGGTTAAACACTGCTGAATAAAAGAATAATGGACAAACTGTGCAATTGACAGAAAAGTGT
* * ** *
8609193 CAATTATACCAGTTAGATGAACGGTTAAATA-CTGTTGAGTAAAAG
66 CAAATATACAAGTTAGATGAAAAGCTAAATACCT-TTGAGTAAAAG
* * ** *
8609238 ATGAAAGGTTAAACACTGTTGAATAAAAGAATAATGGACTAGTTGTGCATTTGACAGAAAAGTGT
1 ATGAAAGGTTAAACACTGCTGAATAAAAGAATAATGGACAAACTGTGCAATTGACAGAAAAGTGT
* *
8609303 CAAATATGCAAGTTA-AGTGAAAAGCTAAATACCTTTGGGTAAAAG
66 CAAATATACAAGTTAGA-TGAAAAGCTAAATACCTTTGAGTAAAAG
8609348 A
1 A
8609349 ATAAGGGAAT
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
109 1 0.01
110 87 0.97
111 2 0.02
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (110 bp):
ATGAAAGGTTAAACACTGCTGAATAAAAGAATAATGGACAAACTGTGCAATTGACAGAAAAGTGT
CAAATATACAAGTTAGATGAAAAGCTAAATACCTTTGAGTAAAAG
Found at i:8614010 original size:55 final size:55
Alignment explanation
Indices: 8613941--8614239 Score: 411
Period size: 55 Copynumber: 5.5 Consensus size: 55
8613931 TGTGCAGTTA
*
8613941 ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTACGTGTGCAAATCC
1 ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGCAAATCC
* * *
8613996 ACGGAATTCATCATGAGTTGATGAATAATCATATAGGCACTATGTGTGCAAATCC
1 ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGCAAATCC
* * *
8614051 ACGGAATTCATTATGAGTTGATGAATAACCGTACATGCACTATGTGTGAAAATCC
1 ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGCAAATCC
* * * * * *
8614106 ACGAAATTCATCATGAGTTGATGAATAATCGTATAAGCACTATGTGTACAAATTC
1 ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGCAAATCC
* * * * * *
8614161 ACGGAATTCATCATAAGTTAATAAATAACCGTACATGCACGATGTGTGCAACT-C
1 ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGCAAATCC
*
8614215 ACAGAATTCATCATGAGTTGATGAA
1 ACGGAATTCATCATGAGTTGATGAA
8614240 CTACCTTATA
Statistics
Matches: 212, Mismatches: 32, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
54 22 0.10
55 190 0.90
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (55 bp):
ACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTATGTGTGCAAATCC
Found at i:8614114 original size:110 final size:110
Alignment explanation
Indices: 8613919--8614239 Score: 459
Period size: 110 Copynumber: 2.9 Consensus size: 110
8613909 TGATTACCAA
* * * *
8613919 ATAGGCACTAAGTGTGC-AGTTAACGGAATTCATCATGAGTTGATGAATAACCGTACAGGCACTA
1 ATAGGCACTATGTGTGCAAATTCACGGAATTCATCATGAGTTGATGAATAACCGTACATGCACTA
* *
8613983 CGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAATCAT
66 TGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAATCAT
* *
8614028 ATAGGCACTATGTGTGCAAATCCACGGAATTCATTATGAGTTGATGAATAACCGTACATGCACTA
1 ATAGGCACTATGTGTGCAAATTCACGGAATTCATCATGAGTTGATGAATAACCGTACATGCACTA
* *
8614093 TGTGTGAAAATCCACGAAATTCATCATGAGTTGATGAATAATCGT
66 TGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAATCAT
* * * * * *
8614138 ATAAGCACTATGTGTACAAATTCACGGAATTCATCATAAGTTAATAAATAACCGTACATGCACGA
1 ATAGGCACTATGTGTGCAAATTCACGGAATTCATCATGAGTTGATGAATAACCGTACATGCACTA
*
8614203 TGTGTGCAACT-CAC-AGAATTCATCATGAGTTGATGAA
66 TGTGTGCAAATCCACGA-AATTCATCATGAGTTGATGAA
8614240 CTACCTTATA
Statistics
Matches: 190, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
108 1 0.01
109 40 0.21
110 149 0.78
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (110 bp):
ATAGGCACTATGTGTGCAAATTCACGGAATTCATCATGAGTTGATGAATAACCGTACATGCACTA
TGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAATCAT
Found at i:8614538 original size:81 final size:80
Alignment explanation
Indices: 8614403--8614652 Score: 367
Period size: 81 Copynumber: 3.1 Consensus size: 80
8614393 TAGTCCAAAA
* *
8614403 TAAAAGAATAATGGCCTAACTGTGCAAATGG-AAGAAATGTGTCAATTATGCCAGTTAGATGAAT
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAA-AAATGTGTCAATTATGCCAGTTAGATGAAC
8614467 GGTTAAATATCGTTGAG
65 GGTTAAATA-CGTTGAG
* * * *
8614484 TAAAAAAATAATGGCCTAACTGTTCAATTGGCATAAATATGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAAAAATGTGTCAATTATGCCAGTTAGATGAACG
*
8614549 GTTAAATGCCGTTGAG
66 GTTAAAT-ACGTTGAG
* *
8614565 TAAAAGAATAATGGCCTAACTGTGCAATTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAAAAATGTGTCAATTATGCCAGTTAGATGAACG
*
8614630 GTCAAATACTGTTGAG
66 GTTAAATAC-GTTGAG
8614646 TAAAAGA
1 TAAAAGA
8614653 TGAAAGGTCA
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.01
81 149 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.28
Consensus pattern (80 bp):
TAAAAGAATAATGGCCTAACTGTGCAATTGGCAAAAATGTGTCAATTATGCCAGTTAGATGAACG
GTTAAATACGTTGAG
Found at i:8614663 original size:29 final size:29
Alignment explanation
Indices: 8614621--8614681 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
8614611 TATGCCAGTT
* * *
8614621 AGATGAACGGTCAAATACTGTTGAGTAAA
1 AGATGAAAGGTCAAATACTATTGAATAAA
8614650 AGATGAAAGGTCAAATACTATTGAATAAA
1 AGATGAAAGGTCAAATACTATTGAATAAA
8614679 AGA
1 AGA
8614682 ATAATGGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.23
Consensus pattern (29 bp):
AGATGAAAGGTCAAATACTATTGAATAAA
Found at i:8614769 original size:110 final size:110
Alignment explanation
Indices: 8614560--8614762 Score: 252
Period size: 110 Copynumber: 1.8 Consensus size: 110
8614550 TTAAATGCCG
* * * *
8614560 TTGAGTAAAAGAATAATGGCCTAACTGTGCAATTGACAAAAAGGTGTCAATTATGCCAGTTAGAT
1 TTGAATAAAAGAATAATGGACTAACTGTGCAATTGACAAAAAGGTGTCAATTATACAAGTTAGAT
* * *
8614625 GAACGGTCAAATACTGTTGAGTAAAAGATGAAAGGTCAAATACTA
66 AAAAGCTCAAATACTGTTGAGTAAAAGATGAAAGGTCAAATACTA
* *
8614670 TTGAATAAAAGAATAATGGACTAGCTGTGCATTTGACAGAAAA-GTGTCAATTATACAAGTTA-A
1 TTGAATAAAAGAATAATGGACTAACTGTGCAATTGACA-AAAAGGTGTCAATTATACAAGTTAGA
*
8614733 GTAAAAAGCT-AAATACCT-TTGGGTAAAAGA
65 -T-AAAAGCTCAAATA-CTGTTGAGTAAAAGA
8614763 ATAAAGGAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
109 1 0.01
110 68 0.86
111 10 0.13
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (110 bp):
TTGAATAAAAGAATAATGGACTAACTGTGCAATTGACAAAAAGGTGTCAATTATACAAGTTAGAT
AAAAGCTCAAATACTGTTGAGTAAAAGATGAAAGGTCAAATACTA
Found at i:8614826 original size:24 final size:26
Alignment explanation
Indices: 8614773--8614826 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 26
8614763 ATAAAGGAAT
*
8614773 TATAATGTAATATGATATGAATGGTA
1 TATAATGTAATATGATATGAATGATA
* *
8614799 TATAA-GTGATATGA-ATGGATGATA
1 TATAATGTAATATGATATGAATGATA
8614823 TATA
1 TATA
8614827 TATTTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 12 0.48
25 8 0.32
26 5 0.20
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (26 bp):
TATAATGTAATATGATATGAATGATA
Found at i:8616143 original size:44 final size:44
Alignment explanation
Indices: 8616056--8616143 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
8616046 AAGATATTAT
* * * * *
8616056 CCATGTGATATGATCTACGTGTTTACATGAACATATGAGATAAG
1 CCATGTGACATGACCTACGTGATTAAATGAACATATGAAATAAG
* *
8616100 CCATGTGACATGACCTACGTGATTAAATGAATATGTGAAATAAG
1 CCATGTGACATGACCTACGTGATTAAATGAACATATGAAATAAG
8616144 ATACAATAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (44 bp):
CCATGTGACATGACCTACGTGATTAAATGAACATATGAAATAAG
Found at i:8616258 original size:21 final size:21
Alignment explanation
Indices: 8616232--8616311 Score: 115
Period size: 21 Copynumber: 3.8 Consensus size: 21
8616222 AGGATTCTAC
8616232 GTGGTCCTTTGGGACATATAT
1 GTGGTCCTTTGGGACATATAT
* *
8616253 GTGGTCCTTCGAGACATATAT
1 GTGGTCCTTTGGGACATATAT
* *
8616274 GTGGTCTTTTGGGACATCTAT
1 GTGGTCCTTTGGGACATATAT
*
8616295 GTGGTCCTTTGGAACAT
1 GTGGTCCTTTGGGACAT
8616312 TCTATATGGC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.19, C:0.16, G:0.28, T:0.38
Consensus pattern (21 bp):
GTGGTCCTTTGGGACATATAT
Found at i:8619840 original size:2 final size:2
Alignment explanation
Indices: 8619835--8619888 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
8619825 CGAGAGAACA
8619835 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8619877 AT AT AT AT AT AT
1 AT AT AT AT AT AT
8619889 TATTGTTCTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8621220 original size:130 final size:131
Alignment explanation
Indices: 8620902--8621269 Score: 513
Period size: 130 Copynumber: 2.8 Consensus size: 131
8620892 ATAATTTTAA
** *
8620902 GAGAGAAAATGGTAATATCAAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
1 GAGAGAAAACAGTAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * * ** * *
8620967 ATAATTTATTACTCCAATCTAAGTGAAGTGATATCACCATTTCGTCTTAAAATTCAATATTGATT
66 GTCATTTATTACTCCAATCGAAACGAAGAGATATCACTATTTCGTCTTAAAATTCAATATTGATT
*
8621032 T
131 C
* * * * *
8621033 GAGTGAAAACAATAATATCTAATGATTTCCAGTCGAGAATAAATGACCTCTCTTGCCTTAAAGCA
1 GAGAGAAAACAGTAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
*
8621098 GTCATTTATTACTCCAATCGAAACGAAGAGATATCACTATTTCGTGTTAAAA-TCAATATTGATT
66 GTCATTTATTACTCCAATCGAAACGAAGAGATATCACTATTTCGTCTTAAAATTCAATATTGATT
8621162 C
131 C
* * *
8621163 GAGAGAAAACAGTGATATCTAATTATTTCCAATCAAGAATAAATGATCTCTCATGCCTTAAAGCA
1 GAGAGAAAACAGTAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * * *
8621228 GTCATTAATTACTCCAACCGAAACGAAGGGATATTACTATTT
66 GTCATTTATTACTCCAATCGAAACGAAGAGATATCACTATTT
8621270 TCAATATCGA
Statistics
Matches: 208, Mismatches: 29, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
130 107 0.51
131 101 0.49
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (131 bp):
GAGAGAAAACAGTAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
GTCATTTATTACTCCAATCGAAACGAAGAGATATCACTATTTCGTCTTAAAATTCAATATTGATT
C
Found at i:8624587 original size:23 final size:23
Alignment explanation
Indices: 8624551--8624619 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
8624541 CACCACAGCT
* *
8624551 CGTATAAATGCACCGAAGTGCCA
1 CGTAAAAATACACCGAAGTGCCA
* * * *
8624574 CGTAGAATTACACCGTAGTGCCG
1 CGTAAAAATACACCGAAGTGCCA
*
8624597 CGTAAAAATGCACCGAAGTGCCA
1 CGTAAAAATACACCGAAGTGCCA
8624620 TATAAGGTTG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.17
Consensus pattern (23 bp):
CGTAAAAATACACCGAAGTGCCA
Found at i:8625018 original size:2 final size:2
Alignment explanation
Indices: 8625011--8625039 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8625001 TGTCTTATCC
8625011 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8625040 TCACATGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8625108 original size:2 final size:2
Alignment explanation
Indices: 8625101--8625139 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8625091 TTCATCTTCC
8625101 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8625140 CATTTTCCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8629822 original size:23 final size:23
Alignment explanation
Indices: 8629788--8629856 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
8629778 CACCACAGCT
*
8629788 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
8629811 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
8629834 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
8629857 TATAAGGTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:8630253 original size:2 final size:2
Alignment explanation
Indices: 8630248--8630274 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8630238 TGTCTTATCC
8630248 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8630275 TCACATGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8631532 original size:64 final size:63
Alignment explanation
Indices: 8631458--8631618 Score: 180
Period size: 64 Copynumber: 2.5 Consensus size: 63
8631448 TTCCCTTGAA
* * * *
8631458 GTGCATCGATGCACTACCCATGTATCGATACACCAATCACCTTCGATGTTTTCA-TTTTAAGGGG
1 GTGCATCGATGCACT-CCTATGAATCGATACACCAATCACATTCGATGTTTCCATTTTTAA-GGG
* * ** *
8631522 GTGCATCGATGCACTCCTTATGAATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGG
1 GTGCATCGATGCACTCC-TATGAATCGATACACCAATCACATTCGATGTTTCCATTTTTAAGGG
* *
8631586 GTGCATCGATGCACTTCCTGTGCATCGATACAC
1 GTGCATCGATGCAC-TCCTATGAATCGATACAC
8631619 ACTGAACAAT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
63 2 0.02
64 71 0.87
65 9 0.11
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (63 bp):
GTGCATCGATGCACTCCTATGAATCGATACACCAATCACATTCGATGTTTCCATTTTTAAGGG
Found at i:8633236 original size:2 final size:2
Alignment explanation
Indices: 8633231--8633298 Score: 113
Period size: 2 Copynumber: 35.0 Consensus size: 2
8633221 AAAGAATCAT
*
8633231 TA TA TA TA -A CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8633272 TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8633299 AAATTGGATA
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
1 2 0.03
2 61 0.97
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8633899 original size:9 final size:10
Alignment explanation
Indices: 8633878--8633903 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8633868 CTTAAAAAAT
8633878 AAAAATTTAA
1 AAAAATTTAA
8633888 AAAAATTTAA
1 AAAAATTTAA
8633898 AAAAAT
1 AAAAAT
8633904 ATATATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATTTAA
Found at i:8636516 original size:20 final size:20
Alignment explanation
Indices: 8636491--8636528 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8636481 TGATCCCACA
*
8636491 AATATGGAAGTAAACAAAAG
1 AATATGGAAGGAAACAAAAG
8636511 AATATGGAAGGAAACAAA
1 AATATGGAAGGAAACAAA
8636529 TTGCAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.61, C:0.05, G:0.21, T:0.13
Consensus pattern (20 bp):
AATATGGAAGGAAACAAAAG
Found at i:8639341 original size:29 final size:29
Alignment explanation
Indices: 8639248--8639332 Score: 161
Period size: 29 Copynumber: 2.9 Consensus size: 29
8639238 TTTTCTGTAG
8639248 ATTATAATAAAATGATTAATGTAATATAA
1 ATTATAATAAAATGATTAATGTAATATAA
8639277 ATTATAATAAAATGATTAATGTAATATAA
1 ATTATAATAAAATGATTAATGTAATATAA
*
8639306 ATTATAATAAAATTATTAATGTAATAT
1 ATTATAATAAAATGATTAATGTAATAT
8639333 TTAACATAAC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (29 bp):
ATTATAATAAAATGATTAATGTAATATAA
Found at i:8640976 original size:17 final size:17
Alignment explanation
Indices: 8640946--8641010 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
8640936 CAAAAATCAT
* * *
8640946 AAAATATGACTTTTATG
1 AAAATTTGAATTTTAGG
*
8640963 AAAATTTGAATTTTCGG
1 AAAATTTGAATTTTAGG
*
8640980 AAAATTTGAATTTTTGG
1 AAAATTTGAATTTTAGG
* *
8640997 ATAATTTGACTTTT
1 AAAATTTGAATTTT
8641011 CGGGTCAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (17 bp):
AAAATTTGAATTTTAGG
Found at i:8649817 original size:122 final size:122
Alignment explanation
Indices: 8649654--8649890 Score: 375
Period size: 122 Copynumber: 1.9 Consensus size: 122
8649644 CTATTAGTTC
* * * *
8649654 TGGGAATTAAGTTCCTGCATGAAATCAAGTAAAAATAGAACCAAATCAGTAATATCAAATCAACA
1 TGGGAAGTAAGTTCCTACATGAAAACAAGTAAAAACAGAACCAAATCAGTAATATCAAATCAACA
* *
8649719 ACGAGGAATAATTATTAACAAAATATATGCAAATTCGATCACTCATCAAATTGGTTA
66 ACGAGGAATAATTATCAACAAAATACATGCAAATTCGATCACTCATCAAATTGGTTA
* * * * *
8649776 TGGGAAGTAAGTTCTTACGTGAAAACAAGTCAGAACAGAACCAAATCAGTAATATCAGATCAACA
1 TGGGAAGTAAGTTCCTACATGAAAACAAGTAAAAACAGAACCAAATCAGTAATATCAAATCAACA
8649841 ACGAGGAATAATTATCAACAAAATACATGCAAATTCGATCACTCATCAAA
66 ACGAGGAATAATTATCAACAAAATACATGCAAATTCGATCACTCATCAAA
8649891 CTCCCCTCAC
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
122 104 1.00
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (122 bp):
TGGGAAGTAAGTTCCTACATGAAAACAAGTAAAAACAGAACCAAATCAGTAATATCAAATCAACA
ACGAGGAATAATTATCAACAAAATACATGCAAATTCGATCACTCATCAAATTGGTTA
Found at i:8650392 original size:20 final size:20
Alignment explanation
Indices: 8650367--8650422 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
8650357 AACTTAGGCA
8650367 AAGGTAGTACCGATACCATC
1 AAGGTAGTACCGATACCATC
8650387 AAGGTAGTACCGATACCATC
1 AAGGTAGTACCGATACCATC
8650407 AAGGTAGTACCGATAC
1 AAGGTAGTACCGATAC
8650423 TACTATGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (20 bp):
AAGGTAGTACCGATACCATC
Found at i:8656141 original size:21 final size:21
Alignment explanation
Indices: 8656115--8656175 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
8656105 ATCCTTAAGG
*
8656115 AGAGGTCATTCGGGACATACA
1 AGAGGTCCTTCGGGACATACA
*
8656136 AGAGGTCCTTCAGGACATACA
1 AGAGGTCCTTCGGGACATACA
*
8656157 AGAAGTCCTTCGGGACATA
1 AGAGGTCCTTCGGGACATA
8656176 TACAAGGTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (21 bp):
AGAGGTCCTTCGGGACATACA
Found at i:8656463 original size:28 final size:28
Alignment explanation
Indices: 8656423--8656488 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
8656413 AATGTATTAT
* *
8656423 ATGACATGTTACATATGTTAAGTACAAG
1 ATGACATGTTACAAAGGTTAAGTACAAG
8656451 ATGACATGTTACAAAGGTTAAGTACAAG
1 ATGACATGTTACAAAGGTTAAGTACAAG
*
8656479 ACGACATGTT
1 ATGACATGTT
8656489 TAAAATGGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (28 bp):
ATGACATGTTACAAAGGTTAAGTACAAG
Found at i:8657467 original size:32 final size:32
Alignment explanation
Indices: 8657422--8657489 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
8657412 CTTTACAAAC
8657422 TCCCTAGTTTTCACGGG-CTAACTAGAACCTT
1 TCCCTAGTTTTCACGGGACTAACTAGAACCTT
* *
8657453 TCCCTAGCTTTTCACGGGATTAGCTAGAACCTT
1 TCCCTAG-TTTTCACGGGACTAACTAGAACCTT
8657486 TCCC
1 TCCC
8657490 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 7 0.21
32 10 0.30
33 16 0.48
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.32
Consensus pattern (32 bp):
TCCCTAGTTTTCACGGGACTAACTAGAACCTT
Found at i:8659220 original size:33 final size:33
Alignment explanation
Indices: 8659157--8659225 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
8659147 AGGATTTTCC
* * * *
8659157 CCCTAGTTTTTCACGGGCTAAACTATAACCTTT
1 CCCTAGCTTTTCACGGGATAAACTAGAACCTAT
* *
8659190 CCCTAGCTTTTCACGGGATCAGCTAGAACCTAT
1 CCCTAGCTTTTCACGGGATAAACTAGAACCTAT
8659223 CCC
1 CCC
8659226 CCTTACAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.30
Consensus pattern (33 bp):
CCCTAGCTTTTCACGGGATAAACTAGAACCTAT
Found at i:8659687 original size:22 final size:22
Alignment explanation
Indices: 8659662--8659718 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
8659652 AAGGGTATTG
8659662 ATAGGGGTATCGGTACCCATTC
1 ATAGGGGTATCGGTACCCATTC
* *
8659684 ATAGGGGTATTGATACCCATTC
1 ATAGGGGTATCGGTACCCATTC
8659706 ATAGGGGTATCGG
1 ATAGGGGTATCGG
8659719 CACCTCTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (22 bp):
ATAGGGGTATCGGTACCCATTC
Found at i:8659987 original size:18 final size:18
Alignment explanation
Indices: 8659938--8659995 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
8659928 ATATTTAATG
*
8659938 AAAAATATACCAATTGTTT
1 AAAAAGATACCAATTG-TT
*
8659957 ACAAAAGGCTACCAATTGTT
1 A-AAAA-GATACCAATTGTT
8659977 AAAAAGATACCAATTGTT
1 AAAAAGATACCAATTGTT
8659995 A
1 A
8659996 CCAATTGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 13 0.38
19 5 0.15
20 7 0.21
21 9 0.26
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (18 bp):
AAAAAGATACCAATTGTT
Found at i:8664884 original size:23 final size:23
Alignment explanation
Indices: 8664820--8664912 Score: 75
Period size: 23 Copynumber: 4.2 Consensus size: 23
8664810 CACCCAAGTG
** *
8664820 CCACATAG-AATGTTTCGAATGA
1 CCACATAGAAATGTCCCGAAGGA
* *
8664842 CCACAT--ATATGTCCCAAAGGA
1 CCACATAGAAATGTCCCGAAGGA
* *
8664863 CCGCATAGAAATGTTCCGAAGGA
1 CCACATAGAAATGTCCCGAAGGA
* **
8664886 CCACGTAGAGTTGTCCCGAAGGA
1 CCACATAGAAATGTCCCGAAGGA
8664909 CCAC
1 CCAC
8664913 GTTAAACCCT
Statistics
Matches: 54, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
21 14 0.26
22 6 0.11
23 34 0.63
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (23 bp):
CCACATAGAAATGTCCCGAAGGA
Found at i:8664913 original size:23 final size:23
Alignment explanation
Indices: 8664850--8664914 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
8664840 GACCACATAT
* * *
8664850 ATGTCCCAAAGGACCGCATAGAA
1 ATGTCCCGAAGGACCACGTAGAA
* *
8664873 ATGTTCCGAAGGACCACGTAGAG
1 ATGTCCCGAAGGACCACGTAGAA
*
8664896 TTGTCCCGAAGGACCACGT
1 ATGTCCCGAAGGACCACGT
8664915 TAAACCCTCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.17
Consensus pattern (23 bp):
ATGTCCCGAAGGACCACGTAGAA
Found at i:8668825 original size:31 final size:32
Alignment explanation
Indices: 8668790--8668851 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
8668780 TATAAAAATT
*
8668790 TGGGGACC-ATTATA-TAATTTTTGAAAAGTTA
1 TGGGGACCAATTA-AGTAATTTTAGAAAAGTTA
*
8668821 TGGGGACCAATTAAGTGATTTTAGAAAAGTT
1 TGGGGACCAATTAAGTAATTTTAGAAAAGTT
8668852 GTGAATGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (32 bp):
TGGGGACCAATTAAGTAATTTTAGAAAAGTTA
Found at i:8669847 original size:33 final size:33
Alignment explanation
Indices: 8669810--8669880 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
8669800 GGGTTATATG
8669810 ACAAGGATCTATGAGATCATACAAGAATGTTAC
1 ACAAGGATCTATGAGATCATACAAGAATGTTAC
* *
8669843 ACAAGGATCTATGAGATCATACAAGATTGTTAT
1 ACAAGGATCTATGAGATCATACAAGAATGTTAC
8669876 ACAAG
1 ACAAG
8669881 CTACATGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (33 bp):
ACAAGGATCTATGAGATCATACAAGAATGTTAC
Found at i:8670188 original size:21 final size:21
Alignment explanation
Indices: 8670114--8670174 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
8670104 ATCCTTAAGG
*
8670114 AGAGGTCATTCGGGACATACA
1 AGAGGTCCTTCGGGACATACA
8670135 AGAGGTCCTTCGGGACATACA
1 AGAGGTCCTTCGGGACATACA
8670156 AGAGGTCCTTCGGGACATA
1 AGAGGTCCTTCGGGACATA
8670175 GACAAGGTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.20
Consensus pattern (21 bp):
AGAGGTCCTTCGGGACATACA
Found at i:8670469 original size:28 final size:28
Alignment explanation
Indices: 8670426--8670515 Score: 153
Period size: 28 Copynumber: 3.2 Consensus size: 28
8670416 TATTATATGG
*
8670426 CATGTTACAAATGTTAAGTACAAGATGA
1 CATGTTACAAAGGTTAAGTACAAGATGA
8670454 CATGTTACAAAGGTTAAGTACAAGATGA
1 CATGTTACAAAGGTTAAGTACAAGATGA
* *
8670482 CATGTTAAAAAGGTTAAGTACAAGACGA
1 CATGTTACAAAGGTTAAGTACAAGATGA
8670510 CATGTT
1 CATGTT
8670516 TTAAATGGGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (28 bp):
CATGTTACAAAGGTTAAGTACAAGATGA
Found at i:8670537 original size:6 final size:6
Alignment explanation
Indices: 8670526--8670574 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
8670516 TTAAATGGGT
* * * * *
8670526 TAATGA TAATGA TAAAGA TCATGA AAATGA TGATGA TATTGA TAATGA
1 TAATGA TAATGA TAATGA TAATGA TAATGA TAATGA TAATGA TAATGA
8670574 T
1 T
8670575 GGCATATGTG
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.47, C:0.02, G:0.18, T:0.33
Consensus pattern (6 bp):
TAATGA
Found at i:8671992 original size:22 final size:22
Alignment explanation
Indices: 8671966--8672022 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
8671956 GTATCGATAA
8671966 GGGTATCGGTACCCATTCATAG
1 GGGTATCGGTACCCATTCATAG
***
8671988 GGGTATTTATACCCATTCATAG
1 GGGTATCGGTACCCATTCATAG
*
8672010 TGGTATCGGTACC
1 GGGTATCGGTACC
8672023 TCTTAATATT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (22 bp):
GGGTATCGGTACCCATTCATAG
Found at i:8672277 original size:19 final size:18
Alignment explanation
Indices: 8672236--8672271 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8672226 ATATTTAATG
8672236 AAAAAGATACCAATTGTT
1 AAAAAGATACCAATTGTT
8672254 AAAAAGATACCAATTGTT
1 AAAAAGATACCAATTGTT
8672272 GGAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (18 bp):
AAAAAGATACCAATTGTT
Found at i:8675079 original size:18 final size:18
Alignment explanation
Indices: 8675056--8675113 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
8675046 TTGGAGCCAG
8675056 GGGGTATTGATACCCATA
1 GGGGTATTGATACCCATA
* *
8675074 GGGGTATCGGTACCC--A
1 GGGGTATTGATACCCATA
*
8675090 -GGGTATTGATTCCCATA
1 GGGGTATTGATACCCATA
*
8675107 GAGGTAT
1 GGGGTAT
8675114 CAGTACCCTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 11 0.35
16 1 0.03
17 1 0.03
18 18 0.58
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (18 bp):
GGGGTATTGATACCCATA
Found at i:8675096 original size:33 final size:33
Alignment explanation
Indices: 8675057--8675121 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
8675047 TGGAGCCAGG
* *
8675057 GGGTATTGATACCCATAGGGGTATCGGTACCCA
1 GGGTATTGATACCCATAGAGGTATCAGTACCCA
*
8675090 GGGTATTGATTCCCATAGAGGTATCAGTACCC
1 GGGTATTGATACCCATAGAGGTATCAGTACCC
8675122 TTTTTGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (33 bp):
GGGTATTGATACCCATAGAGGTATCAGTACCCA
Found at i:8675165 original size:12 final size:12
Alignment explanation
Indices: 8675148--8675182 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
8675138 TTGAGCAGTC
*
8675148 ATAGGGGTATTG
1 ATAGGGGTATCG
8675160 ATAGGGGTATCG
1 ATAGGGGTATCG
8675172 ATAGGGGTATC
1 ATAGGGGTATC
8675183 AGTACCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.06, G:0.40, T:0.29
Consensus pattern (12 bp):
ATAGGGGTATCG
Found at i:8675200 original size:22 final size:23
Alignment explanation
Indices: 8675172--8675232 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
8675162 AGGGGTATCG
8675172 ATAGGGGTATCAG-TACCCATTC
1 ATAGGGGTATCAGATACCCATTC
*
8675194 ATAGGGGTAT-TGATACCCATTC
1 ATAGGGGTATCAGATACCCATTC
8675216 ATAGGGGTATC-GATACC
1 ATAGGGGTATCAGATACC
8675233 TCTTAATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 1 0.03
22 35 0.97
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (23 bp):
ATAGGGGTATCAGATACCCATTC
Found at i:8677596 original size:8 final size:8
Alignment explanation
Indices: 8677560--8677636 Score: 77
Period size: 8 Copynumber: 9.8 Consensus size: 8
8677550 GTGGTTTCAT
*
8677560 AAAAAAAG
1 AAAAAAAC
*
8677568 AAAAAAAT
1 AAAAAAAC
*
8677576 AAAAAAGC
1 AAAAAAAC
*
8677584 CAAAAAAC
1 AAAAAAAC
8677592 -AAAAAAC
1 AAAAAAAC
8677599 -AAAAAAC
1 AAAAAAAC
8677606 AAAAAATAC
1 AAAAAA-AC
*
8677615 AAAAATAC
1 AAAAAAAC
*
8677623 AAAAATAC
1 AAAAAAAC
8677631 AAAAAA
1 AAAAAA
8677637 TTAAAAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
7 14 0.23
8 39 0.65
9 7 0.12
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.05
Consensus pattern (8 bp):
AAAAAAAC
Found at i:8683912 original size:21 final size:21
Alignment explanation
Indices: 8683888--8683963 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 21
8683878 TGTTCCAAAT
*
8683888 GACCACATATATGTCCTGAAG
1 GACCACATAAATGTCCTGAAG
*
8683909 GACCACGTAGAAATGTTCC-GAAG
1 GACCAC--ATAAATG-TCCTGAAG
*
8683932 GACCACGTAAAGTTGTCCTGAAG
1 GACCACATAAA--TGTCCTGAAG
*
8683955 GACCGCATA
1 GACCACATA
8683964 GAACCCTCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
21 9 0.21
22 3 0.07
23 28 0.65
24 3 0.07
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (21 bp):
GACCACATAAATGTCCTGAAG
Found at i:8683936 original size:44 final size:44
Alignment explanation
Indices: 8683868--8683966 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
8683858 CACCGAAGTG
* *
8683868 CCACATAGAATGTTCCAAATGACCACATATA-TGTCCTGAAGGA
1 CCACATAGAATGTTCCAAAGGACCACATAAAGTGTCCTGAAGGA
* * *
8683911 CCACGTAGAAATGTTCCGAAGGACCACGTAAAGTTGTCCTGAAGGA
1 CCACATAG-AATGTTCCAAAGGACCACATAAAG-TGTCCTGAAGGA
*
8683957 CCGCATAGAA
1 CCACATAGAA
8683967 CCCTCCACTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
43 7 0.15
44 19 0.41
45 2 0.04
46 18 0.39
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.20
Consensus pattern (44 bp):
CCACATAGAATGTTCCAAAGGACCACATAAAGTGTCCTGAAGGA
Found at i:8683954 original size:23 final size:23
Alignment explanation
Indices: 8683898--8683958 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
8683888 GACCACATAT
8683898 ATGTCCTGAAGGACCACGTAGAA
1 ATGTCCTGAAGGACCACGTAGAA
8683921 ATGTTCC-GAAGGACCACGTA-AA
1 ATG-TCCTGAAGGACCACGTAGAA
*
8683943 GTTGTCCTGAAGGACC
1 -ATGTCCTGAAGGACC
8683959 GCATAGAACC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
22 5 0.15
23 26 0.76
24 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (23 bp):
ATGTCCTGAAGGACCACGTAGAA
Found at i:8686875 original size:16 final size:16
Alignment explanation
Indices: 8686839--8686871 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8686829 TAACTTCAAA
*
8686839 ATCTTTAATTTCTTCC
1 ATCTTTAATTGCTTCC
8686855 ATCTTTAATTGC-TCC
1 ATCTTTAATTGCTTCC
8686870 AT
1 AT
8686872 TCTTCTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.52
Consensus pattern (16 bp):
ATCTTTAATTGCTTCC
Found at i:8693500 original size:37 final size:37
Alignment explanation
Indices: 8693450--8693526 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
8693440 CAAAATGTAA
*
8693450 ACACTGGACTTGATTATCATGACTTTAGACTCCTCAC
1 ACACTGGACTTGATTATCAGGACTTTAGACTCCTCAC
8693487 ACACTGGACTTGATTATCAGGACTTTAGACTCCTCAC
1 ACACTGGACTTGATTATCAGGACTTTAGACTCCTCAC
8693524 ACA
1 ACA
8693527 ACAAGCTACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (37 bp):
ACACTGGACTTGATTATCAGGACTTTAGACTCCTCAC
Found at i:8694026 original size:21 final size:20
Alignment explanation
Indices: 8693997--8694035 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8693987 TTAAGCATTA
*
8693997 AACACCATAAACAAAACAAAC
1 AACAACATAAA-AAAACAAAC
*
8694018 AACAACATACAAAAACAA
1 AACAACATAAAAAAACAA
8694036 CCATTCATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.69, C:0.26, G:0.00, T:0.05
Consensus pattern (20 bp):
AACAACATAAAAAAACAAAC
Found at i:8694568 original size:32 final size:32
Alignment explanation
Indices: 8694505--8694590 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 32
8694495 CCCCTTCAGG
* *
8694505 GCAGCTGGGCGTGGACCAGACAAGATAAGCTT
1 GCAGCTGGGCGTGGTCTAGACAAGATAAGCTT
* * *
8694537 GCAGCTGGGCGTGGTCTAGATAGGATCAGCTT
1 GCAGCTGGGCGTGGTCTAGACAAGATAAGCTT
* ** *
8694569 GTAGCTGAACGTGGTCTCGACA
1 GCAGCTGGGCGTGGTCTAGACA
8694591 GAATCAGATG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.21
Consensus pattern (32 bp):
GCAGCTGGGCGTGGTCTAGACAAGATAAGCTT
Found at i:8694597 original size:32 final size:32
Alignment explanation
Indices: 8694532--8694597 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 32
8694522 AGACAAGATA
** * *
8694532 AGCTTGCAGCTGGGCGTGGTCTAGATAGGATC
1 AGCTTGCAGCTGAACGTGGTCTAGACAGAATC
* *
8694564 AGCTTGTAGCTGAACGTGGTCTCGACAGAATC
1 AGCTTGCAGCTGAACGTGGTCTAGACAGAATC
8694596 AG
1 AG
8694598 ATGGCCCAGG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (32 bp):
AGCTTGCAGCTGAACGTGGTCTAGACAGAATC
Found at i:8701785 original size:155 final size:155
Alignment explanation
Indices: 8701503--8701813 Score: 622
Period size: 155 Copynumber: 2.0 Consensus size: 155
8701493 CATTGGTGTG
8701503 AAGTTGGTTCAGAATGTCAACAAACTTCTTGAATTGAATGTTATCATTATGCTTCTTCAATCTTT
1 AAGTTGGTTCAGAATGTCAACAAACTTCTTGAATTGAATGTTATCATTATGCTTCTTCAATCTTT
8701568 GTGGAAAATGAGGTGTGGTTTGACTTCCTTTGATGAAGGGACGGGATCAGAGTTTACCTTGGTAT
66 GTGGAAAATGAGGTGTGGTTTGACTTCCTTTGATGAAGGGACGGGATCAGAGTTTACCTTGGTAT
8701633 TTTTATTTGCTCCCTCAGTTTCTTT
131 TTTTATTTGCTCCCTCAGTTTCTTT
8701658 AAGTTGGTTCAGAATGTCAACAAACTTCTTGAATTGAATGTTATCATTATGCTTCTTCAATCTTT
1 AAGTTGGTTCAGAATGTCAACAAACTTCTTGAATTGAATGTTATCATTATGCTTCTTCAATCTTT
8701723 GTGGAAAATGAGGTGTGGTTTGACTTCCTTTGATGAAGGGACGGGATCAGAGTTTACCTTGGTAT
66 GTGGAAAATGAGGTGTGGTTTGACTTCCTTTGATGAAGGGACGGGATCAGAGTTTACCTTGGTAT
8701788 TTTTATTTGCTCCCTCAGTTTCTTT
131 TTTTATTTGCTCCCTCAGTTTCTTT
8701813 A
1 A
8701814 CTCGATGAGC
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (155 bp):
AAGTTGGTTCAGAATGTCAACAAACTTCTTGAATTGAATGTTATCATTATGCTTCTTCAATCTTT
GTGGAAAATGAGGTGTGGTTTGACTTCCTTTGATGAAGGGACGGGATCAGAGTTTACCTTGGTAT
TTTTATTTGCTCCCTCAGTTTCTTT
Found at i:8705289 original size:20 final size:20
Alignment explanation
Indices: 8705264--8705302 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8705254 TTTCCATCGC
*
8705264 ATGCATCTATATGCTCCTAA
1 ATGCATCTATATGATCCTAA
8705284 ATGCATCTATATGATCCTA
1 ATGCATCTATATGATCCTA
8705303 TATGAGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGCATCTATATGATCCTAA
Found at i:8708318 original size:16 final size:16
Alignment explanation
Indices: 8708297--8708345 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
8708287 ATGAAATATT
8708297 TATATATATTTTAAAA
1 TATATATATTTTAAAA
* * * **
8708313 TATATATAATGTCATT
1 TATATATATTTTAAAA
8708329 TATATATATTTTAAAA
1 TATATATATTTTAAAA
8708345 T
1 T
8708346 CGAAGGTGTG
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
TATATATATTTTAAAA
Found at i:8708770 original size:3 final size:3
Alignment explanation
Indices: 8708762--8708800 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
8708752 TTTAATTTTA
8708762 ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8708801 ATGTTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8709245 original size:14 final size:14
Alignment explanation
Indices: 8709226--8709255 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8709216 TTTATATTTT
*
8709226 TTAAAATTACATTA
1 TTAAAAATACATTA
8709240 TTAAAAATACATTA
1 TTAAAAATACATTA
8709254 TT
1 TT
8709256 GATGAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAAAAATACATTA
Found at i:8709553 original size:21 final size:21
Alignment explanation
Indices: 8709524--8709621 Score: 71
Period size: 21 Copynumber: 4.7 Consensus size: 21
8709514 AGTTTTGGGT
*
8709524 TTAGAATTTAGAGTTTATGTG
1 TTAGGATTTAGAGTTTATGTG
* *
8709545 ATAGGATTTA-AGGTTTAAAGT-
1 TTAGGATTTAGA-GTTT-ATGTG
*
8709566 TTA-GAGTTTAGGGTTTATGTG
1 TTAGGA-TTTAGAGTTTATGTG
*
8709587 TTAAGG-TTTAGGGTTTATGTG
1 TT-AGGATTTAGAGTTTATGTG
*
8709608 TTAGGGTTTA-AGTT
1 TTAGGATTTAGAGTT
8709622 ATGCCATGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
20 12 0.19
21 45 0.73
22 4 0.06
23 1 0.02
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (21 bp):
TTAGGATTTAGAGTTTATGTG
Found at i:8711208 original size:26 final size:26
Alignment explanation
Indices: 8711168--8711254 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 26
8711158 CCTAGTATTG
*
8711168 GTTTTGGTGTTTGGTTCTCTGTCCCTT
1 GTTTT-GTGCTTGGTTCTCTGTCCCTT
* * * *
8711195 ATTTTTTGCTTGGTGCTATGTCCCTT
1 GTTTTGTGCTTGGTTCTCTGTCCCTT
8711221 GTTTTGTGCTTGGTGT-TCTGTCCCTT
1 GTTTTGTGCTTGGT-TCTCTGTCCCTT
8711247 GTTTTGTG
1 GTTTTGTG
8711255 TGTCTGCAGG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.02, C:0.17, G:0.25, T:0.55
Consensus pattern (26 bp):
GTTTTGTGCTTGGTTCTCTGTCCCTT
Found at i:8711652 original size:11 final size:11
Alignment explanation
Indices: 8711636--8711731 Score: 66
Period size: 11 Copynumber: 8.4 Consensus size: 11
8711626 ATCGAGTTCA
8711636 AGCTTGAATCG
1 AGCTTGAATCG
*
8711647 AGCTTGAATCA
1 AGCTTGAATCG
** *
8711658 AGCTCAAAATTG
1 AGCT-TGAATCG
8711670 AGCTTGAATCG
1 AGCTTGAATCG
**
8711681 AGCTCAAAATCG
1 AGCT-TGAATCG
*
8711693 AGCTTCAATCG
1 AGCTTGAATCG
* *
8711704 AGCTCGAGTCTCG
1 AGCTTGA--ATCG
*
8711717 AGCTTCAATCG
1 AGCTTGAATCG
8711728 AGCT
1 AGCT
8711732 CTTGAATTTT
Statistics
Matches: 63, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
11 39 0.62
12 16 0.25
13 8 0.13
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (11 bp):
AGCTTGAATCG
Found at i:8711675 original size:23 final size:23
Alignment explanation
Indices: 8711642--8711732 Score: 110
Period size: 23 Copynumber: 3.9 Consensus size: 23
8711632 TTCAAGCTTG
*
8711642 AATCGAGCTTGAATCAAGCTCAA
1 AATCGAGCTTGAATCGAGCTCAA
*
8711665 AATTGAGCTTGAATCGAGCTCAA
1 AATCGAGCTTGAATCGAGCTCAA
* *
8711688 AATCGAGCTTCAATCGAGCTCGAG
1 AATCGAGCTTGAATCGAGCTC-AA
** *
8711712 TCTCGAGCTTCAATCGAGCTC
1 AATCGAGCTTGAATCGAGCTC
8711733 TTGAATTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
23 40 0.67
24 20 0.33
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (23 bp):
AATCGAGCTTGAATCGAGCTCAA
Found at i:8721970 original size:92 final size:96
Alignment explanation
Indices: 8721865--8722077 Score: 247
Period size: 97 Copynumber: 2.2 Consensus size: 96
8721855 TTTCTTATTC
* * * * **
8721865 GAAATGACATGAATCGAGCCAAGGTTGAATAAGTTATTC-TCATGAA-TT-TTCT-ACTAGAAAT
1 GAAATGACGTGAATCAAGCAAAGGTTGAAGAAGTTATTCATCACAAACTTCTTCTCACTAGAAAT
*
8721926 ATTAATCCCTCAGGTGAGGCGTCGCTGATTT
66 ATTAATCCCTCAAGTGAGGCGTCGCTGATTT
* * * * *
8721957 GAAATGTCGTGAATCAAGCAAAGGTTGAAGAAGTTCTTCATTACAAACTTCTTCTCCATTGGAAA
1 GAAATGACGTGAATCAAGCAAAGGTTGAAGAAGTTATTCATCACAAACTTCTTCT-CACTAGAAA
*
8722022 TGTTAATCCCTCAAGTGAGGCGTCGCTGATTT
65 TATTAATCCCTCAAGTGAGGCGTCGCTGATTT
*
8722054 GAAAT-ACCGTGAATCAAACAAAGG
1 GAAATGA-CGTGAATCAAGCAAAGG
8722078 AAACAAATTC
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
92 33 0.33
93 4 0.04
94 2 0.02
95 4 0.04
97 57 0.57
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (96 bp):
GAAATGACGTGAATCAAGCAAAGGTTGAAGAAGTTATTCATCACAAACTTCTTCTCACTAGAAAT
ATTAATCCCTCAAGTGAGGCGTCGCTGATTT
Found at i:8722219 original size:59 final size:59
Alignment explanation
Indices: 8722110--8722232 Score: 138
Period size: 59 Copynumber: 2.1 Consensus size: 59
8722100 ATTATCTACT
** * ** ** *
8722110 GGAAATGTTGGTCCCTCATGTGAGGTGTCACTAATTTGAAATGTCATGAATCTAGCAAA
1 GGAAATGTTAATCCCTCAAGTGAGGTGTCACTAATTCAAAATACCATGAATCGAGCAAA
* * *
8722169 GGAAATGTTAATCCCTCAAGTGAGGTGTCGCTGATTCAAAATACCGTGAATCGAGCAAA
1 GGAAATGTTAATCCCTCAAGTGAGGTGTCACTAATTCAAAATACCATGAATCGAGCAAA
*
8722228 AGAAA
1 GGAAA
8722233 CAAGTTTTTC
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (59 bp):
GGAAATGTTAATCCCTCAAGTGAGGTGTCACTAATTCAAAATACCATGAATCGAGCAAA
Found at i:8722742 original size:74 final size:74
Alignment explanation
Indices: 8722664--8723016 Score: 564
Period size: 74 Copynumber: 4.8 Consensus size: 74
8722654 CTTTTCTTTG
*
8722664 AGTGAAACTATCTCAAGCTAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATCT
1 AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATCT
8722729 TCTATTTCA
66 TCTATTTCA
*
8722738 AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTTAGATAAATCT
1 AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATCT
8722803 TCTATTTCA
66 TCTATTTCA
**
8722812 AGTGAAACTATCTCAAGTGAGATGAATCTTGTTTTAAGAAAAACAA-CTTCAAGTGAGATAAATC
1 AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATC-TCAAGTGAGATAAATC
* **
8722876 TTCTGTTTTG
65 TTCTATTTCA
* * * *
8722886 AGGGAAACTATCTCATGCAAGATAAATCTTGTTTTAAGAAAAGCAATCTCAAGTGAGATAAATCT
1 AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATCT
*
8722951 TCTGTTTCA
66 TCTATTTCA
* *
8722960 AGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAG
1 AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAG
8723017 TGAAACTATT
Statistics
Matches: 257, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
73 1 0.00
74 255 0.99
75 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (74 bp):
AGTGAAACTATCTCAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATCT
TCTATTTCA
Found at i:8723022 original size:55 final size:55
Alignment explanation
Indices: 8722960--8723071 Score: 188
Period size: 55 Copynumber: 2.0 Consensus size: 55
8722950 TTCTGTTTCA
*
8722960 AGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTG
1 AGTGAAACTATCTCAAGCGAGATAAATCTTGTTCTAAGAAAAACAATCTCAAGTG
* * *
8723015 AGTGAAACTATTTCAAGCGAGATGAATCTTGTTCTAAGAAAAGCAATCTCAAGTG
1 AGTGAAACTATCTCAAGCGAGATAAATCTTGTTCTAAGAAAAACAATCTCAAGTG
8723070 AG
1 AG
8723072 ATAAATCTTC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (55 bp):
AGTGAAACTATCTCAAGCGAGATAAATCTTGTTCTAAGAAAAACAATCTCAAGTG
Found at i:8723058 original size:129 final size:129
Alignment explanation
Indices: 8722884--8723145 Score: 425
Period size: 129 Copynumber: 2.0 Consensus size: 129
8722874 TCTTCTGTTT
* *
8722884 TGAGGGAAACTATCTCATGCAAGATAAATCTTGTTTTAAGAAAAGCAATCTCAAGTGAGATAAAT
1 TGAGGGAAACTATCTCAAGCAAGATAAATCTTGTTCTAAGAAAAGCAATCTCAAGTGAGATAAAT
*
8722949 CTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAG
66 CTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAG
* * * *
8723013 TGAGTGAAACTATTTCAAGCGAGATGAATCTTGTTCTAAGAAAAGCAATCTCAAGTGAGATAAAT
1 TGAGGGAAACTATCTCAAGCAAGATAAATCTTGTTCTAAGAAAAGCAATCTCAAGTGAGATAAAT
* * * *
8723078 CTTCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAATAACAATCTCAAG
66 CTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAG
8723142 TGAG
1 TGAG
8723146 ATAAATCTTC
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 122 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (129 bp):
TGAGGGAAACTATCTCAAGCAAGATAAATCTTGTTCTAAGAAAAGCAATCTCAAGTGAGATAAAT
CTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAG
Found at i:8723067 original size:36 final size:35
Alignment explanation
Indices: 8723027--8723219 Score: 172
Period size: 36 Copynumber: 5.3 Consensus size: 35
8723017 TGAAACTATT
* * *
8723027 TCAAGCGAGATGAATCTTGTTCTAAGAAAAGCAATC
1 TCAAGTGAGATAAATCTTGTTTTAAGAAAA-CAATC
* * * *
8723063 TCAAGTGAGATAAATCTTCTATTTCGAGTGAAACTATC
1 TCAAGTGAGATAAATCTTGT-TTT-AAG-AAAACAATC
* * *
8723101 TCAAGCGAGATGAATTTTGTTTTAAGAATAACAATC
1 TCAAGTGAGATAAATCTTGTTTTAAGAA-AACAATC
** *
8723137 TCAAGTGAGATAAATCTTCTGTTTCGTTTG-AAACTATC
1 TCAAGTGAGATAAATC-T-TGTTT--TAAGAAAACAATC
8723175 TCAAGTGAGATAAATCTTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATCTTGTTTTAAG-AAAACAATC
8723211 TCAAGTGAG
1 TCAAGTGAG
8723220 TGAAATTATC
Statistics
Matches: 124, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
34 2 0.02
35 1 0.01
36 59 0.48
37 7 0.06
38 49 0.40
39 4 0.03
40 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (35 bp):
TCAAGTGAGATAAATCTTGTTTTAAGAAAACAATC
Found at i:8723097 original size:74 final size:73
Alignment explanation
Indices: 8723014--8723219 Score: 313
Period size: 74 Copynumber: 2.8 Consensus size: 73
8723004 AATCTCAAGT
* *
8723014 GAGTGAAACTATTTCAAGCGAGATGAATCTTGTTCTAAGAAAAGCAATCTCAAGTGAGATAAATC
1 GAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAA-CAATCTCAAGTGAGATAAATC
8723079 TTCTATTTC
65 TTCTATTTC
*
8723088 GAGTGAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAATAACAATCTCAAGTGAGATAAATC
1 GAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAA-AACAATCTCAAGTGAGATAAATC
*
8723153 TTCTGTTTC
65 TTCTATTTC
** * *
8723162 GTTTGAAACTATCTCAAGTGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAG
1 GAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAG-AAAACAATCTCAAGTGAG
8723220 TGAAATTATC
Statistics
Matches: 121, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
74 117 0.97
75 4 0.03
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (73 bp):
GAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAACAATCTCAAGTGAGATAAATCT
TCTATTTC
Found at i:8723111 original size:38 final size:38
Alignment explanation
Indices: 8723060--8723192 Score: 155
Period size: 38 Copynumber: 3.6 Consensus size: 38
8723050 AAGAAAAGCA
*
8723060 ATCTCAAGTGAGATAAATCTTCTATTTCGAGTGAAACT
1 ATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACT
* * ** * *
8723098 ATCTCAAGCGAGATGAAT-TT-TGTTTTAAG-AATAACA
1 ATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGA-AACT
**
8723134 ATCTCAAGTGAGATAAATCTTCTGTTTCGTTTGAAACT
1 ATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACT
8723172 ATCTCAAGTGAGATAAATCTT
1 ATCTCAAGTGAGATAAATCTT
8723193 GTTTTAAGAA
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
35 1 0.01
36 25 0.33
37 4 0.05
38 45 0.59
39 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (38 bp):
ATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACT
Found at i:8723161 original size:203 final size:203
Alignment explanation
Indices: 8722812--8723240 Score: 673
Period size: 203 Copynumber: 2.1 Consensus size: 203
8722802 TTCTATTTCA
* *
8722812 AGTGAAACTATCTCAAGTGAGATGAATCTTGTTTTAAGAAAAACAACTTCAAGTGAGATAAATCT
1 AGTGAAACTATCTCAAGCGAGATGAATCTTGTTCTAAGAAAAACAACTTCAAGTGAGATAAATCT
* * *
8722877 TCTGTTTTGAGGGAAACTATCTCATGCAAGATAAATCTTGTTTTAAGAAAAGCAATCTCAAGTGA
66 TCTATTTCGAGGGAAACTATCTCAAGCAAGATAAATCTTGTTTTAAGAAAAGCAATCTCAAGTGA
8722942 GATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAAT
131 GATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAAT
8723007 CTCAAGTG
196 CTCAAGTG
* *
8723015 AGTGAAACTATTTCAAGCGAGATGAATCTTGTTCTAAGAAAAGCAA-TCTCAAGTGAGATAAATC
1 AGTGAAACTATCTCAAGCGAGATGAATCTTGTTCTAAGAAAAACAACT-TCAAGTGAGATAAATC
* * * *
8723079 TTCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAATAA-CAATCTCAAGT
65 TTCTATTTCGAGGGAAACTATCTCAAGCAAGATAAATCTTGTTTTAAGAA-AAGCAATCTCAAGT
*** *
8723143 GAGATAAATCTTCTGTTTCGTTTGAAACTATCTCAAGTGAGATAAATCTTGTTTTAAGAAAAACA
129 GAGATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACA
8723208 ATCTCAAGTG
194 ATCTCAAGTG
* *
8723218 AGTGAAATTATCTAAAGCGAGAT
1 AGTGAAACTATCTCAAGCGAGAT
8723241 AAAAAAAATT
Statistics
Matches: 206, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
202 1 0.00
203 203 0.99
204 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (203 bp):
AGTGAAACTATCTCAAGCGAGATGAATCTTGTTCTAAGAAAAACAACTTCAAGTGAGATAAATCT
TCTATTTCGAGGGAAACTATCTCAAGCAAGATAAATCTTGTTTTAAGAAAAGCAATCTCAAGTGA
GATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAAT
CTCAAGTG
Found at i:8723307 original size:203 final size:203
Alignment explanation
Indices: 8722812--8723321 Score: 548
Period size: 203 Copynumber: 2.5 Consensus size: 203
8722802 TTCTATTTCA
* * * ** * * * *
8722812 AGTGAAACTATCTCAAGTGAGATGAATCTTGTTTTAAGAAAAACAA-CTTCAAGTGAGATAAATC
1 AGTGAAACTATCTAAAGCGAGATAAAAATTCTTCTAAGAAAAGCAATC-TCAAGGGAGATAAATC
* ** ** * * * *
8722876 TTCTGTTTTGAGGGAAACTATCTCATGCAAGATAAATCTTGTTTTAAGAAAAGCAATCTCAAGTG
65 TTCTATTTCAAGTAAAAATATCTCAAGCGAGATAAATTTTGTTTTAAGAAAAGCAATCTCAAGTG
8722941 AGATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAA
130 AGATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAA
8723006 TCTCAAGTG
195 TCTCAAGTG
* * * ** * *
8723015 AGTGAAACTATTTCAAGCGAGATGAATCTTGTTCTAAGAAAAGCAATCTCAAGTGAGATAAATCT
1 AGTGAAACTATCTAAAGCGAGATAAAAATTCTTCTAAGAAAAGCAATCTCAAGGGAGATAAATCT
* * * *
8723080 TCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAATAA-CAATCTCAAGTG
66 TCTATTTCAAGTAAAAATATCTCAAGCGAGATAAATTTTGTTTTAAGAA-AAGCAATCTCAAGTG
*** *
8723144 AGATAAATCTTCTGTTTCGTTTGAAACTATCTCAAGTGAGATAAATCTTGTTTTAAGAAAAACAA
130 AGATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAA
8723209 TCTCAAGTG
195 TCTCAAGTG
* * * * *
8723218 AGTGAAATTATCTAAAGCGAGATAAAAAAAATTCTTC-GAGTGAAA-CTATCTCAAGGGAGATGA
1 AGTGAAACTATCTAAAGCGAGAT---AAAAATTCTTCTAAG-AAAAGCAATCTCAAGGGAGATAA
* *
8723281 ATCTTGT-TTT-AAG-AAAAATAATCTCAAGTGAGATAAATTTT
62 ATCTTCTATTTCAAGTAAAAAT-ATCTCAAGCGAGATAAATTTT
8723322 TGTATTAAAT
Statistics
Matches: 267, Mismatches: 33, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
202 4 0.01
203 224 0.84
204 6 0.02
205 23 0.09
206 10 0.04
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (203 bp):
AGTGAAACTATCTAAAGCGAGATAAAAATTCTTCTAAGAAAAGCAATCTCAAGGGAGATAAATCT
TCTATTTCAAGTAAAAATATCTCAAGCGAGATAAATTTTGTTTTAAGAAAAGCAATCTCAAGTGA
GATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAAT
CTCAAGTG
Found at i:8727567 original size:22 final size:22
Alignment explanation
Indices: 8727535--8727591 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
8727525 AATATTAAGA
*
8727535 GGTACCGATACCCCTATGAATG
1 GGTACCAATACCCCTATGAATG
*
8727557 GGTATCAATACCCCTATGAATG
1 GGTACCAATACCCCTATGAATG
*
8727579 GGTACCGATACCC
1 GGTACCAATACCC
8727592 GGATATCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (22 bp):
GGTACCAATACCCCTATGAATG
Found at i:8729605 original size:19 final size:20
Alignment explanation
Indices: 8729568--8729608 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
8729558 TGAGACCATG
8729568 AATTTCAAATATACAAAATT
1 AATTTCAAATATACAAAATT
8729588 AATTTCAAA-ACT-CAAAATT
1 AATTTCAAATA-TACAAAATT
8729607 AA
1 AA
8729609 AGATAAACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (20 bp):
AATTTCAAATATACAAAATT
Found at i:8730838 original size:20 final size:20
Alignment explanation
Indices: 8730794--8730845 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8730784 TATATTTTCC
* * *
8730794 AACAATTGGTAT-TTTTTTT
1 AACAATTGGTATCCTTTGTA
8730813 AACAATTGGTATCCTTTGTA
1 AACAATTGGTATCCTTTGTA
*
8730833 AACAATTGATATC
1 AACAATTGGTATC
8730846 TTTTTCATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (20 bp):
AACAATTGGTATCCTTTGTA
Done.