Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 62
Found at i:9001361 original size:56 final size:56
Alignment explanation
Indices: 9001301--9001496 Score: 166
Period size: 56 Copynumber: 3.3 Consensus size: 56
9001291 TAATTTAGGG
9001301 CGCCCT-TTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAA
1 CGCCCTCTT-GGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAA
* * ** * *
9001357 CGCCCTCTTGGGTTTTCATCCTATGTGAA-GTTTTTTT-TACTGTATCTGAATTAACAGGATTTA
1 CGCCCTCTTGGGTTTTCA-CCCA---AAACGTTTTTTTAT-CT-T-T-T---TTTTC-TGACTTA
**
9001420 GGG
54 GAA
9001423 CGCCCT-TTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAA
1 CGCCCTCTT-GGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAA
9001479 CGCCCTCTTGGGTTTTCA
1 CGCCCTCTTGGGTTTTCA
9001497 TCCTATGTGA
Statistics
Matches: 107, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
56 36 0.34
57 10 0.09
58 1 0.01
59 10 0.09
60 4 0.04
61 2 0.02
62 4 0.04
63 10 0.09
64 1 0.01
65 8 0.07
66 21 0.20
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.44
Consensus pattern (56 bp):
CGCCCTCTTGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAA
Found at i:9001460 original size:122 final size:122
Alignment explanation
Indices: 9001293--9001539 Score: 494
Period size: 122 Copynumber: 2.0 Consensus size: 122
9001283 TTTTTTTTTA
9001293 ATTTAGGGCGCCCTTTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAAC
1 ATTTAGGGCGCCCTTTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAAC
9001358 GCCCTCTTGGGTTTTCATCCTATGTGAAGTTTTTTTTACTGTATCTGAATTAACAGG
66 GCCCTCTTGGGTTTTCATCCTATGTGAAGTTTTTTTTACTGTATCTGAATTAACAGG
9001415 ATTTAGGGCGCCCTTTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAAC
1 ATTTAGGGCGCCCTTTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAAC
9001480 GCCCTCTTGGGTTTTCATCCTATGTGAAGTTTTTTTTACTGTATCTGAATTAACAGG
66 GCCCTCTTGGGTTTTCATCCTATGTGAAGTTTTTTTTACTGTATCTGAATTAACAGG
9001537 ATT
1 ATT
9001540 AGGTAGTTTT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 125 1.00
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (122 bp):
ATTTAGGGCGCCCTTTCGGGTTTTCACCCAAAACGTTTTTTTATCTTTTTTTTCTGACTTAGAAC
GCCCTCTTGGGTTTTCATCCTATGTGAAGTTTTTTTTACTGTATCTGAATTAACAGG
Found at i:9005491 original size:20 final size:20
Alignment explanation
Indices: 9005462--9005500 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9005452 AAAGCCCATA
*
9005462 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
9005482 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
9005501 GAAGTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:9005832 original size:32 final size:32
Alignment explanation
Indices: 9005796--9005892 Score: 104
Period size: 32 Copynumber: 3.0 Consensus size: 32
9005786 ATTCTATTGG
*
9005796 GACCACACCCAGCTACAATCTGATTCTGTCTA
1 GACCACACCCAGCTACAAGCTGATTCTGTCTA
* ** * *
9005828 GACCATACCCAGCTGTAAGCTGATTCTGTATG
1 GACCACACCCAGCTACAAGCTGATTCTGTCTA
* * * *
9005860 GACCACGCCTAACTACAAGCTGATCCTGTCTA
1 GACCACACCCAGCTACAAGCTGATTCTGTCTA
9005892 G
1 G
9005893 TCCATGCCCA
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.25
Consensus pattern (32 bp):
GACCACACCCAGCTACAAGCTGATTCTGTCTA
Found at i:9007571 original size:23 final size:23
Alignment explanation
Indices: 9007528--9007571 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
9007518 GCCAAGACAT
**
9007528 TTCCATTTTCCATTACACCATGA
1 TTCCATTTTCCACAACACCATGA
9007551 TTCCA-TTTCCACAACATCCAT
1 TTCCATTTTCCACAACA-CCAT
9007572 TTCATCTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.27, C:0.34, G:0.02, T:0.36
Consensus pattern (23 bp):
TTCCATTTTCCACAACACCATGA
Found at i:9016454 original size:32 final size:32
Alignment explanation
Indices: 9016418--9016528 Score: 125
Period size: 32 Copynumber: 3.5 Consensus size: 32
9016408 GGGTCGTCTA
* * **
9016418 ATTCTGTCAGGACCACGCCTAACTACAAGCTG
1 ATTCTGTCTGGACCACGCCTAGCTGTAAGCTG
* * *
9016450 ATTCTATCTGAACCACACCTAGCTGTAAGCTG
1 ATTCTGTCTGGACCACGCCTAGCTGTAAGCTG
* *
9016482 ATTATGTCTGGACCATGCTCT-GCTGTAAGCTG
1 ATTCTGTCTGGACCACGC-CTAGCTGTAAGCTG
9016514 ATTCTGTCTGGACCA
1 ATTCTGTCTGGACCA
9016529 TACCAAACTG
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
32 63 0.97
33 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (32 bp):
ATTCTGTCTGGACCACGCCTAGCTGTAAGCTG
Found at i:9016529 original size:32 final size:32
Alignment explanation
Indices: 9016444--9016547 Score: 120
Period size: 32 Copynumber: 3.2 Consensus size: 32
9016434 GCCTAACTAC
* * *
9016444 AAGCTGATTCTATCTGAACCACACCTAGCTGT
1 AAGCTGATTCTGTCTGGACCATACCTAGCTGT
* *
9016476 AAGCTGATTATGTCTGGACCATGCTCT-GCTGT
1 AAGCTGATTCTGTCTGGACCATAC-CTAGCTGT
* *
9016508 AAGCTGATTCTGTCTGGACCATACCAAACTGT
1 AAGCTGATTCTGTCTGGACCATACCTAGCTGT
*
9016540 AATCTGAT
1 AAGCTGAT
9016548 CTTGTCTAGT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
31 1 0.02
32 57 0.95
33 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (32 bp):
AAGCTGATTCTGTCTGGACCATACCTAGCTGT
Found at i:9017478 original size:15 final size:15
Alignment explanation
Indices: 9017458--9017503 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
9017448 GAGATAGCAT
9017458 AGGGCACCATTTGTA
1 AGGGCACCATTTGTA
*
9017473 AGGGCACCATTCGTA
1 AGGGCACCATTTGTA
9017488 AGGGCACCATTTGTA
1 AGGGCACCATTTGTA
9017503 A
1 A
9017504 ACTCTGTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (15 bp):
AGGGCACCATTTGTA
Found at i:9017746 original size:16 final size:15
Alignment explanation
Indices: 9017721--9017751 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
9017711 TCTATTTGCT
9017721 ACCATATTCCATTTC
1 ACCATATTCCATTTC
9017736 ACCATTATTCCATTTC
1 ACCA-TATTCCATTTC
9017752 TACAACATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (15 bp):
ACCATATTCCATTTC
Found at i:9020486 original size:16 final size:16
Alignment explanation
Indices: 9020465--9020534 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
9020455 ACTAAAATAA
*
9020465 GAGTGAGAAGGTAGTT
1 GAGTGAGAAGATAGTT
* * *
9020481 GAGTGAAAATATAATT
1 GAGTGAGAAGATAGTT
9020497 GAGTGAGAAGATAGTT
1 GAGTGAGAAGATAGTT
9020513 GAGTGAGAAGATAGTT
1 GAGTGAGAAGATAGTT
9020529 GAGTGA
1 GAGTGA
9020535 TCAATAGTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.39, C:0.00, G:0.36, T:0.26
Consensus pattern (16 bp):
GAGTGAGAAGATAGTT
Found at i:9021453 original size:20 final size:20
Alignment explanation
Indices: 9021406--9021457 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
9021396 ATTGAAGATA
* *
9021406 AGAAAATAAAAAATCAAGTC
1 AGAAAATCAAGAATCAAGTC
9021426 AGAAAATCAAGAATCAAGTC
1 AGAAAATCAAGAATCAAGTC
9021446 AGAAAATCAAGA
1 AGAAAATCAAGA
9021458 TTGGAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.62, C:0.12, G:0.13, T:0.13
Consensus pattern (20 bp):
AGAAAATCAAGAATCAAGTC
Found at i:9022878 original size:20 final size:21
Alignment explanation
Indices: 9022855--9022905 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
9022845 TTGGATGATC
*
9022855 AGTATCGATATTGAT-TGAAG
1 AGTATCGATACTGATGTGAAG
*
9022875 AGTATCGATACTGATGTGGAG
1 AGTATCGATACTGATGTGAAG
9022896 A-TATCGATAC
1 AGTATCGATAC
9022906 CAAGAGGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (21 bp):
AGTATCGATACTGATGTGAAG
Found at i:9023622 original size:23 final size:23
Alignment explanation
Indices: 9023596--9023692 Score: 142
Period size: 23 Copynumber: 4.2 Consensus size: 23
9023586 GTCCATCGGT
*
9023596 ACAAATCTATGTGATCCTTTGGG
1 ACAAACCTATGTGATCCTTTGGG
*
9023619 ACAAACCTATGTGGTCCTTTGGG
1 ACAAACCTATGTGATCCTTTGGG
*
9023642 ACAAACCTATGTGGTCCTTTGGG
1 ACAAACCTATGTGATCCTTTGGG
*
9023665 ACAAAGCTATGTGGAT-CTTTGGG
1 ACAAACCTATGT-GATCCTTTGGG
9023688 ACAAA
1 ACAAA
9023693 TATGTGGCAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 67 0.97
24 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (23 bp):
ACAAACCTATGTGATCCTTTGGG
Found at i:9023652 original size:46 final size:46
Alignment explanation
Indices: 9023580--9023692 Score: 156
Period size: 46 Copynumber: 2.5 Consensus size: 46
9023570 TCGAGGTTTT
* * * *
9023580 TATGTGGTCCATCGGTACAAATCTATGTGATCCTTTGGGACAAACC
1 TATGTGGTCCTTTGGGACAAACCTATGTGATCCTTTGGGACAAACC
* *
9023626 TATGTGGTCCTTTGGGACAAACCTATGTGGTCCTTTGGGACAAAGC
1 TATGTGGTCCTTTGGGACAAACCTATGTGATCCTTTGGGACAAACC
9023672 TATGTGGAT-CTTTGGGACAAA
1 TATGTGG-TCCTTTGGGACAAA
9023693 TATGTGGCAC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 59 0.98
47 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
TATGTGGTCCTTTGGGACAAACCTATGTGATCCTTTGGGACAAACC
Found at i:9024544 original size:28 final size:28
Alignment explanation
Indices: 9024484--9024538 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
9024474 CTGATAGATT
* *
9024484 AATGATCTTATCTTAATAGATGTCGGAA
1 AATGATCTTATCTTAATAGATATCAGAA
9024512 AATGATCTTATCTTAATAGATATCAGA
1 AATGATCTTATCTTAATAGATATCAGA
9024539 CTATGAGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (28 bp):
AATGATCTTATCTTAATAGATATCAGAA
Found at i:9029552 original size:20 final size:20
Alignment explanation
Indices: 9029523--9029561 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9029513 TAAGTCTATT
*
9029523 TTCTATATTTGATGT-CATGA
1 TTCTACATTT-ATGTACATGA
9029543 TTCTACATTTATGTACATG
1 TTCTACATTTATGTACATG
9029562 TATATGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.49
Consensus pattern (20 bp):
TTCTACATTTATGTACATGA
Found at i:9029950 original size:23 final size:24
Alignment explanation
Indices: 9029904--9029950 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
9029894 TGGTCTATAG
*
9029904 GAATATATATGTGGTCTTTAAGGA
1 GAATATATATGTGGTCCTTAAGGA
*
9029928 GAAT-TATATGTGGTCCTTCAGGA
1 GAATATATATGTGGTCCTTAAGGA
9029951 CATAGATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.36
Consensus pattern (24 bp):
GAATATATATGTGGTCCTTAAGGA
Found at i:9029986 original size:21 final size:21
Alignment explanation
Indices: 9029827--9029994 Score: 124
Period size: 21 Copynumber: 7.9 Consensus size: 21
9029817 TCGAGGGTTC
9029827 TATGTGGTCCTTCGGGACATA
1 TATGTGGTCCTTCGGGACATA
** * *
9029848 TATGTAATCCTTTGGAACATA
1 TATGTGGTCCTTCGGGACATA
* *
9029869 TATGTGGTTCTTTGGGACATA
1 TATGTGGTCCTTCGGGACATA
* * * *
9029890 TATTTGGT-CTATAGGAATATA
1 TATGTGGTCCT-TCGGGACATA
* *
9029911 TATGTGGTCTTTAAGGAGA-ATTA
1 TATGTGGTCCTT-CGG-GACA-TA
*
9029934 TATGTGGTCCTTCAGGACATA
1 TATGTGGTCCTTCGGGACATA
* * *
9029955 GATGTGATCCTTCGGGATATA
1 TATGTGGTCCTTCGGGACATA
* *
9029976 TATGAGGTCCTTAGGGACA
1 TATGTGGTCCTTCGGGACA
9029995 ACTTTATATG
Statistics
Matches: 114, Mismatches: 27, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
20 2 0.02
21 91 0.80
22 7 0.06
23 14 0.12
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.36
Consensus pattern (21 bp):
TATGTGGTCCTTCGGGACATA
Found at i:9033809 original size:23 final size:22
Alignment explanation
Indices: 9033768--9033811 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
9033758 AAATATATCA
* *
9033768 TTTTTAAAAATATATTATATAG
1 TTTTGAAAAATATAGTATATAG
9033790 TTTTGAAAACATATAGTATATA
1 TTTTGAAAA-ATATAGTATATA
9033812 TGGCTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (22 bp):
TTTTGAAAAATATAGTATATAG
Found at i:9033874 original size:24 final size:24
Alignment explanation
Indices: 9033841--9033897 Score: 82
Period size: 22 Copynumber: 2.5 Consensus size: 24
9033831 TTAAAAACAT
9033841 ATATAATATATATAATTTTTGAAA
1 ATATAATATATATAATTTTTGAAA
* *
9033865 CTAT-AT-TATATAGTTTTTGAAA
1 ATATAATATATATAATTTTTGAAA
9033887 ATATAATATAT
1 ATATAATATAT
9033898 GTTATATAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 18 0.64
23 4 0.14
24 6 0.21
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (24 bp):
ATATAATATATATAATTTTTGAAA
Found at i:9033902 original size:29 final size:27
Alignment explanation
Indices: 9033870--9033923 Score: 90
Period size: 29 Copynumber: 1.9 Consensus size: 27
9033860 TGAAACTATA
9033870 TTATATAGTTTTTGAAAATATAATATATG
1 TTATATAGTTTTT-AAAATA-AATATATG
9033899 TTATATAGTTTTTAAAATAAATATA
1 TTATATAGTTTTTAAAATAAATATA
9033924 GTGTATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 6 0.24
28 6 0.24
29 13 0.52
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (27 bp):
TTATATAGTTTTTAAAATAAATATATG
Found at i:9033956 original size:19 final size:18
Alignment explanation
Indices: 9033934--9033992 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
9033924 GTGTATGTAT
9033934 TTATATATATATATATATA
1 TTATATATATATAT-TATA
*
9033953 TTAT-T-TATAGTATTATT
1 TTATATATATA-TATTATA
*
9033970 TTATATTTATTATATTATA
1 TTATATATA-TATATTATA
9033989 TTAT
1 TTAT
9033993 TATTAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
17 11 0.32
18 5 0.15
19 16 0.47
20 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TTATATATATATATTATA
Found at i:9033982 original size:9 final size:10
Alignment explanation
Indices: 9033934--9033997 Score: 53
Period size: 11 Copynumber: 6.3 Consensus size: 10
9033924 GTGTATGTAT
9033934 TTATA-TATA
1 TTATATTATA
9033943 -TATATATATA
1 TTATAT-TATA
*
9033953 TTATTTATAGTA
1 TTATAT-TA-TA
*
9033965 TTATTTTATA
1 TTATATTATA
9033975 TT-TATTATA
1 TTATATTATA
9033984 TTATATTATTA
1 TTATATTA-TA
9033995 TTA
1 TTA
9033998 AAAATATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
8 4 0.09
9 8 0.17
10 13 0.28
11 14 0.30
12 8 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
TTATATTATA
Found at i:9033990 original size:24 final size:26
Alignment explanation
Indices: 9033945--9033996 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
9033935 TATATATATA
*
9033945 TATATATATTATTTATAGTATTATTT
1 TATATATATTATATATAGTATTATTT
* *
9033971 TATATTTATTATATTATATTATTATT
1 TATATATATTATA-TATAGTATTATT
9033997 AAAAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (26 bp):
TATATATATTATATATAGTATTATTT
Found at i:9034456 original size:21 final size:20
Alignment explanation
Indices: 9034430--9034472 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
9034420 CAAGCAGTAT
9034430 ACCAAG-AAAATCAACAGAGAA
1 ACCAAGCAAAA-CAAC-GAGAA
*
9034451 ACCAAGCAAGACAACGAGAA
1 ACCAAGCAAAACAACGAGAA
9034471 AC
1 AC
9034473 ATCGAACCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 10 0.50
22 3 0.15
ACGTcount: A:0.58, C:0.23, G:0.16, T:0.02
Consensus pattern (20 bp):
ACCAAGCAAAACAACGAGAA
Found at i:9035238 original size:7 final size:7
Alignment explanation
Indices: 9035226--9035254 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
9035216 GATCAAATGC
9035226 TTAACTT
1 TTAACTT
9035233 TTAACTT
1 TTAACTT
9035240 TTAACTT
1 TTAACTT
9035247 TTAA-TT
1 TTAACTT
9035253 TT
1 TT
9035255 CACAATTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (7 bp):
TTAACTT
Found at i:9039245 original size:57 final size:59
Alignment explanation
Indices: 9039170--9039303 Score: 191
Period size: 57 Copynumber: 2.3 Consensus size: 59
9039160 AATTTCAAAT
* * * *
9039170 TAATTCTCAAAATGTCACCATTTTCAAAATAATT-CCTAAAATGTCATC-TTTTAAAAA
1 TAATTCCCAAAATGTCACCATTTTCAAAATAATTCCCAAAAATATCACCTTTTTAAAAA
* * *
9039227 TAATTCCCAAACTGTCACCTTTTTCAAAATAATTCCCAAAAATATCACCTTTTTCAAAA
1 TAATTCCCAAAATGTCACCATTTTCAAAATAATTCCCAAAAATATCACCTTTTTAAAAA
9039286 TAATTCCCAAAATGTCAC
1 TAATTCCCAAAATGTCAC
9039304 TGGGTCGAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 31 0.46
58 11 0.16
59 25 0.37
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.34
Consensus pattern (59 bp):
TAATTCCCAAAATGTCACCATTTTCAAAATAATTCCCAAAAATATCACCTTTTTAAAAA
Found at i:9039277 original size:30 final size:29
Alignment explanation
Indices: 9039162--9039303 Score: 196
Period size: 29 Copynumber: 4.9 Consensus size: 29
9039152 AATAGTCAAA
* * *
9039162 TTTCAAATTAATTCTCAAAATGTCACCAT
1 TTTCAAAATAATTCCCAAAATGTCACCTT
* *
9039191 TTTCAAAATAATTCCTAAAATGTCATC-T
1 TTTCAAAATAATTCCCAAAATGTCACCTT
* *
9039219 TTTAAAAATAATTCCCAAACTGTCACCTT
1 TTTCAAAATAATTCCCAAAATGTCACCTT
*
9039248 TTTCAAAATAATTCCCAAAAATATCACCTT
1 TTTCAAAATAATTCCC-AAAATGTCACCTT
9039278 TTTCAAAATAATTCCCAAAATGTCAC
1 TTTCAAAATAATTCCCAAAATGTCAC
9039304 TGGGTCGAGT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
28 24 0.24
29 48 0.48
30 27 0.27
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.35
Consensus pattern (29 bp):
TTTCAAAATAATTCCCAAAATGTCACCTT
Found at i:9039338 original size:17 final size:18
Alignment explanation
Indices: 9039305--9039355 Score: 77
Period size: 17 Copynumber: 2.9 Consensus size: 18
9039295 AAATGTCACT
* *
9039305 GGGTCGAGTCGGGTCAAC
1 GGGTCGGGTCAGGTCAAC
9039323 GGGTCGGGTC-GGTCAAC
1 GGGTCGGGTCAGGTCAAC
9039340 GGGTCGGGTCAGGTCA
1 GGGTCGGGTCAGGTCA
9039356 GACCGGTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.14, C:0.22, G:0.47, T:0.18
Consensus pattern (18 bp):
GGGTCGGGTCAGGTCAAC
Found at i:9039377 original size:19 final size:19
Alignment explanation
Indices: 9039353--9039402 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
9039343 TCGGGTCAGG
9039353 TCAGACCGGTCAACCCGAT
1 TCAGACCGGTCAACCCGAT
* * *
9039372 TTAGACCGGTTAACCCGGT
1 TCAGACCGGTCAACCCGAT
*
9039391 TCAGACTGGTCA
1 TCAGACCGGTCA
9039403 GACAGGTTCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (19 bp):
TCAGACCGGTCAACCCGAT
Found at i:9046546 original size:28 final size:29
Alignment explanation
Indices: 9046489--9046612 Score: 216
Period size: 28 Copynumber: 4.3 Consensus size: 29
9046479 ATAGTCCACA
*
9046489 TTCAAAATAATTTCCAAAATGTCACCTTT
1 TTCAAAATAATTCCCAAAATGTCACCTTT
*
9046518 TTTAAAATAATTCCCAAAATGTCA-CTTT
1 TTCAAAATAATTCCCAAAATGTCACCTTT
9046546 TTCAAAATAATTCCCAAAATGTCACCTTT
1 TTCAAAATAATTCCCAAAATGTCACCTTT
9046575 TT-AAAATAATTCCCAAAATGTCACCTTT
1 TTCAAAATAATTCCCAAAATGTCACCTTT
9046603 TTCAAAATAA
1 TTCAAAATAA
9046613 GTCAACGGTC
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
28 55 0.61
29 35 0.39
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.36
Consensus pattern (29 bp):
TTCAAAATAATTCCCAAAATGTCACCTTT
Found at i:9046603 original size:57 final size:57
Alignment explanation
Indices: 9046489--9046612 Score: 223
Period size: 57 Copynumber: 2.2 Consensus size: 57
9046479 ATAGTCCACA
*
9046489 TTCAAAATAATTTCCAAAATGTCACCTTTTTTAAAATAATTCCCAAAATGTCACTTT
1 TTCAAAATAATTCCCAAAATGTCACCTTTTTTAAAATAATTCCCAAAATGTCACTTT
9046546 TTCAAAATAATTCCCAAAATGTCACC-TTTTTAAAATAATTCCCAAAATGTCACCTTT
1 TTCAAAATAATTCCCAAAATGTCACCTTTTTTAAAATAATTCCCAAAATGTCA-CTTT
9046603 TTCAAAATAA
1 TTCAAAATAA
9046613 GTCAACGGTC
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
56 26 0.40
57 39 0.60
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.36
Consensus pattern (57 bp):
TTCAAAATAATTCCCAAAATGTCACCTTTTTTAAAATAATTCCCAAAATGTCACTTT
Found at i:9050953 original size:17 final size:17
Alignment explanation
Indices: 9050931--9050966 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
9050921 CTGGGTACAA
9050931 TGTTGTTTCCAGAGGTT
1 TGTTGTTTCCAGAGGTT
9050948 TGTTGTTTCCAGAGGTT
1 TGTTGTTTCCAGAGGTT
9050965 TG
1 TG
9050967 AGTTCAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.31, T:0.47
Consensus pattern (17 bp):
TGTTGTTTCCAGAGGTT
Found at i:9051286 original size:109 final size:109
Alignment explanation
Indices: 9051164--9051381 Score: 391
Period size: 109 Copynumber: 2.0 Consensus size: 109
9051154 AGCAAACAAG
* * *
9051164 AAGAAGCGCATGGTTGCAGCATCCTATATGAAGGCAAACGATTAAGAAAAAAAGGGAAGTATGCG
1 AAGAAGCGCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAAAAAAAGGGAAGTATGCA
9051229 ATAAAAGAGATCCCTAGGCAATCACATTTCTTAAGCAAATAAAC
66 ATAAAAGAGATCCCTAGGCAATCACATTTCTTAAGCAAATAAAC
* *
9051273 AAGAAGCTCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAACAAAAGGGAAGTATGCA
1 AAGAAGCGCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAAAAAAAGGGAAGTATGCA
9051338 ATAAAAGAGATCCCTAGGCAATCACATTTCTTAAGCAAATAAAC
66 ATAAAAGAGATCCCTAGGCAATCACATTTCTTAAGCAAATAAAC
9051382 TTTAAAAATG
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 104 1.00
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (109 bp):
AAGAAGCGCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAAAAAAAGGGAAGTATGCA
ATAAAAGAGATCCCTAGGCAATCACATTTCTTAAGCAAATAAAC
Found at i:9054571 original size:166 final size:166
Alignment explanation
Indices: 9054297--9054629 Score: 666
Period size: 166 Copynumber: 2.0 Consensus size: 166
9054287 TAGTTTCGCG
9054297 TTCGAGTCGAACTTAAGAATTTTGGGATCGAGTGTTTTCGAGTCGATTCAAATCCATTTAAAAAA
1 TTCGAGTCGAACTTAAGAATTTTGGGATCGAGTGTTTTCGAGTCGATTCAAATCCATTTAAAAAA
9054362 TTTTCGAATCAAATCCAGTTCAGTAATACTCAAACTCGACTCAGCTCGTTTACTGCCCTAATTAT
66 TTTTCGAATCAAATCCAGTTCAGTAATACTCAAACTCGACTCAGCTCGTTTACTGCCCTAATTAT
9054427 GATGCTATCTCTAACATAACAATGTAAAACTAAGGA
131 GATGCTATCTCTAACATAACAATGTAAAACTAAGGA
9054463 TTCGAGTCGAACTTAAGAATTTTGGGATCGAGTGTTTTCGAGTCGATTCAAATCCATTTAAAAAA
1 TTCGAGTCGAACTTAAGAATTTTGGGATCGAGTGTTTTCGAGTCGATTCAAATCCATTTAAAAAA
9054528 TTTTCGAATCAAATCCAGTTCAGTAATACTCAAACTCGACTCAGCTCGTTTACTGCCCTAATTAT
66 TTTTCGAATCAAATCCAGTTCAGTAATACTCAAACTCGACTCAGCTCGTTTACTGCCCTAATTAT
9054593 GATGCTATCTCTAACATAACAATGTAAAACTAAGGA
131 GATGCTATCTCTAACATAACAATGTAAAACTAAGGA
9054629 T
1 T
9054630 AAACCATCCC
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
166 167 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (166 bp):
TTCGAGTCGAACTTAAGAATTTTGGGATCGAGTGTTTTCGAGTCGATTCAAATCCATTTAAAAAA
TTTTCGAATCAAATCCAGTTCAGTAATACTCAAACTCGACTCAGCTCGTTTACTGCCCTAATTAT
GATGCTATCTCTAACATAACAATGTAAAACTAAGGA
Found at i:9056008 original size:2 final size:2
Alignment explanation
Indices: 9055996--9056066 Score: 133
Period size: 2 Copynumber: 35.5 Consensus size: 2
9055986 AAATTATTAA
*
9055996 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9056038 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9056067 AGATTATTTA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:9057781 original size:11 final size:11
Alignment explanation
Indices: 9057765--9057812 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
9057755 GTTAGAAGAG
9057765 AAAAAAATAAA
1 AAAAAAATAAA
9057776 AAAAAAATAAA
1 AAAAAAATAAA
9057787 AAAAGAAA-AGAA
1 AAAA-AAATA-AA
* *
9057799 AAGAAAAGAAA
1 AAAAAAATAAA
9057810 AAA
1 AAA
9057813 TATTTAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 23 0.72
12 9 0.28
ACGTcount: A:0.88, C:0.00, G:0.08, T:0.04
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:9058989 original size:15 final size:15
Alignment explanation
Indices: 9058939--9058995 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
9058929 ATGTAATGAA
* *
9058939 ATATAATTATATAACT
1 ATATAA-TATGTAAGT
9058955 ATATAATATGTAAGT
1 ATATAATATGTAAGT
*
9058970 GTATAACTATGT-AGT
1 ATATAA-TATGTAAGT
*
9058985 ATATATTATGT
1 ATATAATATGT
9058996 TTTCAAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
14 5 0.14
15 19 0.54
16 11 0.31
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.44
Consensus pattern (15 bp):
ATATAATATGTAAGT
Found at i:9059064 original size:25 final size:26
Alignment explanation
Indices: 9059026--9059098 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 26
9059016 TATATATATA
*
9059026 TATATATTCAAAATATGTTTTCAAAATC
1 TATATATT--AAATATGTTTTCAAAAGC
9059054 -ATATATT-AA-ATGTTTTC-AAAGC
1 TATATATTAAATATGTTTTCAAAAGC
**
9059076 TATATATTATTTATG-TTTCAAAA
1 TATATATTAAATATGTTTTCAAAA
9059099 ATGTTTTCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
22 4 0.11
23 15 0.39
24 6 0.16
25 6 0.16
27 7 0.18
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (26 bp):
TATATATTAAATATGTTTTCAAAAGC
Found at i:9059185 original size:38 final size:35
Alignment explanation
Indices: 9059066--9059342 Score: 167
Period size: 38 Copynumber: 7.7 Consensus size: 35
9059056 ATATTAAATG
* * * *
9059066 TTTTCAAAGCTATATATTATTTATGTTTCAAAAATG-
1 TTTTCAAAACTATATA-TATATAT-TTTTAAAAACGT
** * *
9059102 TTTTC-AAA-TAT-TATATACGTTTTAAAAAATG-
1 TTTTCAAAACTATATATATATATTTTTAAAAACGT
* *
9059133 TTTTCAAAATTATATATTATGTATATATTTTTAAAACGT
1 TTTTCAAAACTATATA-TA--TATAT-TTTTAAAAACGT
* *
9059172 TTTT-AAAACTATATATATTATACGTTTTCAAAAATGT
1 TTTTCAAAACTATATATA-TATA--TTTTTAAAAACGT
*
9059209 GTTTTCAAAACTATATAATATATGTTTTTAAAAACGT
1 -TTTTCAAAACTATAT-ATATATATTTTTAAAAACGT
* *
9059246 ATTTTCAAAACCATA-ATATATATTTTCAAAAACCGAT
1 -TTTTCAAAACTATATATATATATTTTTAAAAA-CG-T
**
9059283 TTTT-AAAAGCTATATATTATATACTTTCAAAAAACGTT
1 TTTTCAAAA-CTATATA-TATATA-TTTTTAAAAACG-T
*
9059321 TTTTAAAAACTATATAT-TATAT
1 TTTTCAAAACTATATATATATAT
9059343 GTTTGCAAAA
Statistics
Matches: 195, Mismatches: 26, Indels: 41
0.74 0.10 0.16
Matches are distributed among these distances:
31 15 0.08
32 7 0.04
33 5 0.03
34 5 0.03
35 24 0.12
36 23 0.12
37 41 0.21
38 43 0.22
39 29 0.15
40 3 0.02
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (35 bp):
TTTTCAAAACTATATATATATATTTTTAAAAACGT
Found at i:9059197 original size:75 final size:77
Alignment explanation
Indices: 9059115--9059266 Score: 190
Period size: 77 Copynumber: 2.0 Consensus size: 77
9059105 TCAAATATTA
*
9059115 TATACGTTTT-AAAAA-ATGTTTTCAAAATTATATATTATGTATATATTTTT-AAAACGT-TTTT
1 TATACGTTTTCAAAAATATGTTTTCAAAACTATATA--A--TATATATTTTTAAAAACGTATTTT
*
9059176 -AAAACTAT-ATATAT
62 CAAAACCATAATATAT
* *
9059190 TATACGTTTTCAAAAATGTGTTTTCAAAACTATATAATATATGTTTTTAAAAACGTATTTTCAAA
1 TATACGTTTTCAAAAATATGTTTTCAAAACTATATAATATATATTTTTAAAAACGTATTTTCAAA
9059255 ACCATAATATAT
66 ACCATAATATAT
9059267 ATTTTCAAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
73 10 0.15
74 7 0.10
75 15 0.22
76 12 0.18
77 23 0.34
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (77 bp):
TATACGTTTTCAAAAATATGTTTTCAAAACTATATAATATATATTTTTAAAAACGTATTTTCAAA
ACCATAATATAT
Found at i:9059353 original size:37 final size:36
Alignment explanation
Indices: 9059165--9059354 Score: 163
Period size: 37 Copynumber: 5.1 Consensus size: 36
9059155 ATATATTTTT
*
9059165 AAAACG-TTTTT-AAAACTATATATATTATACGTTTTCA
1 AAAACGTTTTTTAAAAAC--TATATATTATATG-TTTCA
* * * * *
9059202 AAAATGTGTTTTCAAAACTATATAATATATGTTTTTA
1 AAAACGTTTTTTAAAAACTATATATTATATG-TTTCA
* * *
9059239 AAAACGTATTTTCAAAACCATA-ATATATAT-TTTCA
1 AAAACGTTTTTTAAAAACTATATAT-TATATGTTTCA
* * *
9059274 AAAACCGATTTTTAAAAGCTATATATTATATACTTTCAA
1 AAAA-CGTTTTTTAAAAACTATATATTATAT-GTTTC-A
9059313 AAAACGTTTTTTAAAAACTATATATTATATGTTTGCA
1 AAAACGTTTTTTAAAAACTATATATTATATGTTT-CA
9059350 AAAAC
1 AAAAC
9059355 TACATTATAT
Statistics
Matches: 126, Mismatches: 18, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
35 8 0.06
36 19 0.15
37 56 0.44
38 33 0.26
39 10 0.08
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.41
Consensus pattern (36 bp):
AAAACGTTTTTTAAAAACTATATATTATATGTTTCA
Found at i:9062171 original size:39 final size:37
Alignment explanation
Indices: 9062078--9062368 Score: 354
Period size: 37 Copynumber: 7.7 Consensus size: 37
9062068 TATATATAAA
* *
9062078 ATTTTGAAAACATATATAATATATATTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
** * *
9062115 GGTTTGAAAACATATATATATAATATATAGTTTTTTAAAAAAT
1 ATTTTG--AA-A-ATATATATAATATATAG-TTTTT-GAAAAC
9062158 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* *
9062195 ATTTTGAAAGCATATACATAATATATAGTTTTTGAAAAT
1 ATTTTGAAA--ATATATATAATATATAGTTTTTGAAAAC
*
9062234 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
9062271 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* * *
9062308 ATTTTGAAAGTATATAT--TATATTG-TTTTGTAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
*
9062342 ATTTTGAATATATTATATATATATATA
1 ATTTTGAAAATA-TATATA-ATATATA
9062369 TATATATATA
Statistics
Matches: 222, Mismatches: 20, Indels: 23
0.84 0.08 0.09
Matches are distributed among these distances:
34 19 0.09
35 11 0.05
37 96 0.43
38 10 0.05
39 54 0.24
40 2 0.01
41 17 0.08
42 5 0.02
43 8 0.04
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (37 bp):
ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
Found at i:9062238 original size:11 final size:11
Alignment explanation
Indices: 9062224--9062283 Score: 59
Period size: 11 Copynumber: 5.1 Consensus size: 11
9062214 AATATATAGT
9062224 TTTTGAAAATA
1 TTTTGAAAATA
9062235 TTTTGAAAATA
1 TTTTGAAAATA
*
9062246 TATAT-AATATATA
1 T-TTTGAA-A-ATA
9062259 GTTTTTGAAAATA
1 --TTTTGAAAATA
9062272 TTTTGAAAATA
1 TTTTGAAAATA
9062283 T
1 T
9062284 ATATAATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
11 26 0.63
12 3 0.07
13 6 0.15
14 3 0.07
15 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (11 bp):
TTTTGAAAATA
Found at i:9062409 original size:22 final size:24
Alignment explanation
Indices: 9062382--9062441 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
9062372 ATATATATAT
* *
9062382 ATATATAATATATAGTTTTTGAAA
1 ATATATATTATATAGTTTTTAAAA
9062406 ATATATATTATATAGTTTTTAAAA
1 ATATATATTATATAGTTTTTAAAA
9062430 A-ATAT-TTATATA
1 ATATATATTATATA
9062442 TTATATTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 7 0.21
23 4 0.12
24 23 0.68
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (24 bp):
ATATATATTATATAGTTTTTAAAA
Found at i:9062413 original size:2 final size:2
Alignment explanation
Indices: 9062349--9062395 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
9062339 AACATTTTGA
9062349 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9062389 AT AT AT A
1 AT AT AT A
9062396 GTTTTTGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 41 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9062441 original size:24 final size:23
Alignment explanation
Indices: 9062360--9062442 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 23
9062350 TATATTATAT
* * * *
9062360 ATATATATATATA-TATATATAT
1 ATATATATATATAGTTTTTAAAA
*
9062382 ATATATAATATATAGTTTTTGAAA
1 ATATAT-ATATATAGTTTTTAAAA
9062406 ATATATATTATATAGTTTTTAAAAA
1 ATATATA-TATATAGTTTTT-AAAA
*
9062431 ATATTTATATAT
1 ATATATATATAT
9062443 TATATTATAG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
22 6 0.12
23 8 0.16
24 27 0.54
25 9 0.18
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
ATATATATATATAGTTTTTAAAA
Found at i:9062478 original size:20 final size:20
Alignment explanation
Indices: 9062455--9062514 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
9062445 TATTATAGTA
9062455 TATTATTTATTATTTTATTT
1 TATTATTTATTATTTTATTT
* *
9062475 TATTATTT-TCATTTTCTTT
1 TATTATTTATTATTTTATTT
9062494 CTA-T-TTTATTTATTTTATTT
1 -TATTATTTA-TTATTTTATTT
9062514 T
1 T
9062515 TTGTTATTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
18 3 0.09
19 11 0.33
20 19 0.58
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (20 bp):
TATTATTTATTATTTTATTT
Found at i:9062510 original size:5 final size:5
Alignment explanation
Indices: 9062464--9062523 Score: 56
Period size: 5 Copynumber: 12.2 Consensus size: 5
9062454 ATATTATTTA
*
9062464 TTATT TTATT TTA-- TTATT TTCATT TTCTT TCTATT TTA-T TTATT TTATT
1 TTATT TTATT TTATT TTATT TT-ATT TTATT T-TATT TTATT TTATT TTATT
9062513 TT-TT GTTATT T
1 TTATT -TTATT T
9062524 GGTCCAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
3 3 0.07
4 6 0.13
5 26 0.57
6 11 0.24
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:9062639 original size:25 final size:25
Alignment explanation
Indices: 9062610--9062670 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
9062600 TGGCAGGCCT
* *
9062610 GACCCAGCAAATCGACTAGGCCAAG
1 GACCCAACAAATCGACCAGGCCAAG
* * *
9062635 GACCCAACAAATTGACCCGGTCAAG
1 GACCCAACAAATCGACCAGGCCAAG
9062660 GACCCAACAAA
1 GACCCAACAAA
9062671 CCAACCCGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.39, C:0.33, G:0.20, T:0.08
Consensus pattern (25 bp):
GACCCAACAAATCGACCAGGCCAAG
Found at i:9062677 original size:25 final size:25
Alignment explanation
Indices: 9062631--9062678 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9062621 TCGACTAGGC
***
9062631 CAAGGACCCAACAAATTGACCCGGT
1 CAAGGACCCAACAAACCAACCCGGT
9062656 CAAGGACCCAACAAACCAACCCG
1 CAAGGACCCAACAAACCAACCCG
9062679 ACCAAGAGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.40, C:0.38, G:0.17, T:0.06
Consensus pattern (25 bp):
CAAGGACCCAACAAACCAACCCGGT
Found at i:9062684 original size:25 final size:25
Alignment explanation
Indices: 9062630--9062684 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
9062620 ATCGACTAGG
*** *
9062630 CCAAGGACCCAACAAATTGACCCGG
1 CCAAGGACCCAACAAACCAACCCGA
*
9062655 TCAAGGACCCAACAAACCAACCCGA
1 CCAAGGACCCAACAAACCAACCCGA
9062680 CCAAG
1 CCAAG
9062685 AGTCCAGAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.38, G:0.16, T:0.05
Consensus pattern (25 bp):
CCAAGGACCCAACAAACCAACCCGA
Found at i:9065202 original size:19 final size:19
Alignment explanation
Indices: 9065178--9065219 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9065168 AACCAGATTG
* *
9065178 CCCAGATGGTACTGGTACC
1 CCCAGATGGTACCGATACC
9065197 CCCAGATGGTACCGATACC
1 CCCAGATGGTACCGATACC
9065216 CCCA
1 CCCA
9065220 TGCCAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.24, C:0.38, G:0.21, T:0.17
Consensus pattern (19 bp):
CCCAGATGGTACCGATACC
Found at i:9076019 original size:23 final size:22
Alignment explanation
Indices: 9075993--9076053 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 22
9075983 GATACCCCCT
* *
9075993 TTGAATGGATACCGATA-CCATCC
1 TTGAATGGGTACCAATAGCCA--C
9076016 TTGAATGGGTACCAATAGCCAC
1 TTGAATGGGTACCAATAGCCAC
9076038 TTGAATGGGTACCAAT
1 TTGAATGGGTACCAAT
9076054 GCCCCCATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
22 17 0.49
23 15 0.43
24 3 0.09
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (22 bp):
TTGAATGGGTACCAATAGCCAC
Found at i:9076043 original size:22 final size:22
Alignment explanation
Indices: 9075984--9076053 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
9075974 CTAGGTATCG
* * *
9075984 ATACCCCCTTTGAATGGATACCG
1 ATACCACC-TTGAATGGGTACCA
9076007 ATACCATCCTTGAATGGGTACCA
1 ATACCA-CCTTGAATGGGTACCA
9076030 ATAGCCA-CTTGAATGGGTACCA
1 ATA-CCACCTTGAATGGGTACCA
9076052 AT
1 AT
9076054 GCCCCCATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 17 0.40
23 20 0.48
24 5 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (22 bp):
ATACCACCTTGAATGGGTACCA
Found at i:9078020 original size:16 final size:16
Alignment explanation
Indices: 9077983--9078020 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
9077973 AAACACTTTG
*
9077983 ATGTTGTTGGATTGAT
1 ATGTTTTTGGATTGAT
*
9077999 ATGTTTTTGGATTGTT
1 ATGTTTTTGGATTGAT
9078015 ATGTTT
1 ATGTTT
9078021 AAATTTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (16 bp):
ATGTTTTTGGATTGAT
Found at i:9090873 original size:46 final size:46
Alignment explanation
Indices: 9090813--9090920 Score: 180
Period size: 46 Copynumber: 2.3 Consensus size: 46
9090803 CCCATATTAT
9090813 TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCA
1 TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCA
* * * *
9090859 TAGGACTACATAGAACACATATGTCCCGTGGGACCACTATGTCCCG
1 TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCA
9090905 TAGGACCACGTAGAAC
1 TAGGACCACGTAGAAC
9090921 CCTCGACTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCA
Found at i:9090901 original size:18 final size:18
Alignment explanation
Indices: 9090878--9090913 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9090868 ATAGAACACA
*
9090878 TATGTCCCGTGGGACCAC
1 TATGTCCCGTAGGACCAC
9090896 TATGTCCCGTAGGACCAC
1 TATGTCCCGTAGGACCAC
9090914 GTAGAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.33, G:0.25, T:0.22
Consensus pattern (18 bp):
TATGTCCCGTAGGACCAC
Found at i:9091449 original size:25 final size:25
Alignment explanation
Indices: 9091421--9091470 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
9091411 TTTAGCACCA
*
9091421 TATCACTACATGTTTATGCTTCAGT
1 TATCACTACATGTTTACGCTTCAGT
*
9091446 TATCACTATATGTTTACGCTTCAGT
1 TATCACTACATGTTTACGCTTCAGT
9091471 ACCCCTGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (25 bp):
TATCACTACATGTTTACGCTTCAGT
Found at i:9094919 original size:18 final size:18
Alignment explanation
Indices: 9094898--9094979 Score: 74
Period size: 18 Copynumber: 5.0 Consensus size: 18
9094888 GTAGAACACA
9094898 TATGTCCCGTAGGACCAC
1 TATGTCCCGTAGGACCAC
9094916 TATGTCCCGTAGGACCAC
1 TATGTCCCGTAGGACCAC
*
9094934 -A-------TA-GAACAC
1 TATGTCCCGTAGGACCAC
9094943 ATATGTCCCGTAGGACCAC
1 -TATGTCCCGTAGGACCAC
*
9094962 TATGTCCTGTAGGACCAC
1 TATGTCCCGTAGGACCAC
9094980 GTAGAACCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 20
0.69 0.04 0.27
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
11 1 0.02
17 1 0.02
18 37 0.73
19 5 0.10
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (18 bp):
TATGTCCCGTAGGACCAC
Found at i:9094931 original size:46 final size:46
Alignment explanation
Indices: 9094879--9094986 Score: 198
Period size: 46 Copynumber: 2.3 Consensus size: 46
9094869 CCCATATTAT
9094879 TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCG
1 TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCG
* *
9094925 TAGGACCACATAGAACACATATGTCCCGTAGGACCACTATGTCCTG
1 TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCG
9094971 TAGGACCACGTAGAAC
1 TAGGACCACGTAGAAC
9094987 CCTCGACTCT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
TAGGACCACGTAGAACACATATGTCCCGTAGGACCACTATGTCCCG
Found at i:9095105 original size:20 final size:20
Alignment explanation
Indices: 9095080--9095127 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
9095070 CACATAGACA
* *
9095080 CATAGTTTACTTTCACATAG
1 CATAGTTCAATTTCACATAG
*
9095100 CATAGTTCAATTTCACGTAG
1 CATAGTTCAATTTCACATAG
9095120 CATAGTTC
1 CATAGTTC
9095128 CATGTAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (20 bp):
CATAGTTCAATTTCACATAG
Found at i:9095539 original size:25 final size:25
Alignment explanation
Indices: 9095511--9095560 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
9095501 TTTAGCACCA
9095511 TATCACTACATGTTTACGCTTCAGT
1 TATCACTACATGTTTACGCTTCAGT
*
9095536 TATCACTATATGTTTACGCTTCAGT
1 TATCACTACATGTTTACGCTTCAGT
9095561 ACCCCTGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (25 bp):
TATCACTACATGTTTACGCTTCAGT
Found at i:9096591 original size:40 final size:40
Alignment explanation
Indices: 9096547--9096628 Score: 148
Period size: 40 Copynumber: 2.0 Consensus size: 40
9096537 ACCGTAGTGC
9096547 TACACATAAGGTCGTGCCCACCATATACACCG-AAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGTAA-TGTAT
9096587 TACACATAAGGTCGTGCCCACCATATACACCGTAATGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGTAATGTAT
9096627 TA
1 TA
9096629 TAAACCTGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGTAATGTAT
Found at i:9096909 original size:7 final size:7
Alignment explanation
Indices: 9096897--9096921 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9096887 AACAAGGTCG
9096897 ATTTTCT
1 ATTTTCT
9096904 ATTTTCT
1 ATTTTCT
9096911 ATTTTCT
1 ATTTTCT
9096918 ATTT
1 ATTT
9096922 ACAACTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTTCT
Found at i:9103275 original size:40 final size:40
Alignment explanation
Indices: 9103220--9103301 Score: 139
Period size: 40 Copynumber: 2.0 Consensus size: 40
9103210 ACCGTAGTGC
*
9103220 TACACATAAGGTTGTGCCCACCATATATACCG-AAGTGTAT
1 TACACATAAGGTTGTGCCCACCATATACACCGTAA-TGTAT
9103260 TACACATAAGGTTGTGCCCACCATATACACCGTAATGTAT
1 TACACATAAGGTTGTGCCCACCATATACACCGTAATGTAT
9103300 TA
1 TA
9103302 TAAACCTTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (40 bp):
TACACATAAGGTTGTGCCCACCATATACACCGTAATGTAT
Found at i:9106143 original size:37 final size:37
Alignment explanation
Indices: 9106083--9106416 Score: 480
Period size: 37 Copynumber: 9.0 Consensus size: 37
9106073 TATATATAAA
*
9106083 ATTTTG-AAACATATATAATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* * *
9106119 GTTTTGAAAAAGTATATATAATATATAGTTTTTAAAAAAAAT
1 ATTTTG-AAAA-TATATATAATATATAGTTTTT---GAAAAC
*
9106161 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* *
9106198 ATTTTGAAAGCATATACATAATATATAGTTTTTGAAAAT
1 ATTTTGAAA--ATATATATAATATATAGTTTTTGAAAAC
9106237 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
9106274 ATTTTGAAAATATATAT--TATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
* *
9106309 ATTTTGAAAATATATATAATGTATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
9106346 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
*
9106383 ATTTTGAAAATATATAT--TATATAGTTTTTAAAAA
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAA
9106417 ATATTTATAT
Statistics
Matches: 274, Mismatches: 14, Indels: 21
0.89 0.05 0.07
Matches are distributed among these distances:
35 51 0.19
36 5 0.02
37 125 0.46
38 3 0.01
39 56 0.20
40 21 0.08
41 4 0.01
42 9 0.03
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.44
Consensus pattern (37 bp):
ATTTTGAAAATATATATAATATATAGTTTTTGAAAAC
Found at i:9106350 original size:109 final size:109
Alignment explanation
Indices: 9106083--9106416 Score: 499
Period size: 109 Copynumber: 3.0 Consensus size: 109
9106073 TATATATAAA
* **
9106083 ATTTTG-AAACATATATAATATATAGTTTTTGAAAACGTTTTGAAAAAGTATATATAATATATAG
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAATATTTTG-AAAA-TATATATAATATATAG
* * *
9106147 TTTTTAAAAAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
64 TTTTT---GAAAACATTTTGAAAATATATAT--TATATAGTTTTTGAAAAC
*
9106198 ATTTTGAAAGCATATACATAATATATAGTTTTTGAAAATATTTTGAAAATATATATAATATATAG
1 ATTTTGAAA--ATATATATAATATATAGTTTTTGAAAATATTTTGAAAATATATATAATATATAG
9106263 TTTTTGAAAACATTTTGAAAATATATATTATATAGTTTTTGAAAAC
64 TTTTTGAAAACATTTTGAAAATATATATTATATAGTTTTTGAAAAC
*
9106309 ATTTTGAAAATATATATAATGTATAGTTTTTGAAAATATTTTGAAAATATATATAATATATAGTT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAATATTTTGAAAATATATATAATATATAGTT
*
9106374 TTTGAAAACATTTTGAAAATATATATTATATAGTTTTTAAAAA
66 TTTGAAAACATTTTGAAAATATATATTATATAGTTTTTGAAAA
9106417 ATATTTATAT
Statistics
Matches: 206, Mismatches: 10, Indels: 12
0.90 0.04 0.05
Matches are distributed among these distances:
109 96 0.47
111 26 0.13
113 21 0.10
115 6 0.03
116 23 0.11
117 4 0.02
118 30 0.15
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.44
Consensus pattern (109 bp):
ATTTTGAAAATATATATAATATATAGTTTTTGAAAATATTTTGAAAATATATATAATATATAGTT
TTTGAAAACATTTTGAAAATATATATTATATAGTTTTTGAAAAC
Found at i:9106427 original size:22 final size:23
Alignment explanation
Indices: 9106384--9106427 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
9106374 TTTGAAAACA
*
9106384 TTTTGAAAATATATATTATATAG
1 TTTTGAAAAAATATATTATATAG
*
9106407 TTTTTAAAAAATAT-TTATATA
1 TTTTGAAAAAATATATTATATA
9106428 TTATATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (23 bp):
TTTTGAAAAAATATATTATATAG
Found at i:9106441 original size:12 final size:12
Alignment explanation
Indices: 9106421--9106465 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
9106411 TAAAAAATAT
*
9106421 TTATATATTATA
1 TTATTTATTATA
9106433 TTATTTATTATA
1 TTATTTATTATA
9106445 TTA-TTA-TA-A
1 TTATTTATTATA
9106454 CTTATTTATTAT
1 -TTATTTATTAT
9106466 TTTCATTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
9 1 0.04
10 5 0.18
11 6 0.21
12 16 0.57
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATTTATTATA
Found at i:9106463 original size:17 final size:18
Alignment explanation
Indices: 9106418--9106466 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
9106408 TTTTAAAAAA
*
9106418 TATTTATATATTATATTATT
1 TATTTAT-TATTATA-TACT
9106438 TATTATATTATTATA-ACT
1 TATT-TATTATTATATACT
9106456 TATTTATTATT
1 TATTTATTATT
9106467 TTCATTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.26
18 6 0.22
20 11 0.41
21 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTATTATTATATACT
Found at i:9106625 original size:25 final size:25
Alignment explanation
Indices: 9106596--9106666 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
9106586 GGCAGGCCTG
9106596 ACCCAACAAACCGACCAGACCAAGA
1 ACCCAACAAACCGACCAGACCAAGA
* * *
9106621 ACCCAACAAACCAACCTGACAAAGA
1 ACCCAACAAACCGACCAGACCAAGA
** * *
9106646 GTCCAGCAAACCGACCCGACC
1 ACCCAACAAACCGACCAGACC
9106667 CAAGTTTGCC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.44, C:0.41, G:0.13, T:0.03
Consensus pattern (25 bp):
ACCCAACAAACCGACCAGACCAAGA
Found at i:9109399 original size:2 final size:2
Alignment explanation
Indices: 9109392--9109423 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9109382 TGAATTAAAG
9109392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9109424 TAAATTTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9109652 original size:16 final size:16
Alignment explanation
Indices: 9109622--9109660 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
9109612 GTTTACTTCA
*
9109622 GAATGA-TTAAGTGTT
1 GAATGATTTAAATGTT
9109637 GAATGATTTAAATGTT
1 GAATGATTTAAATGTT
*
9109653 TAATGATT
1 GAATGATT
9109661 CAGAGGCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.44
Consensus pattern (16 bp):
GAATGATTTAAATGTT
Found at i:9116657 original size:24 final size:24
Alignment explanation
Indices: 9116625--9116682 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
9116615 GGATTGTGGG
9116625 ATTCCCATGTGATGGGAATCCCAC
1 ATTCCCATGTGATGGGAATCCCAC
*
9116649 ATTCCCATGGGATGGGAATCCCAC
1 ATTCCCATGTGATGGGAATCCCAC
9116673 ATTCCCATGT
1 ATTCCCATGT
9116683 TTTGTTGGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (24 bp):
ATTCCCATGTGATGGGAATCCCAC
Found at i:9117874 original size:22 final size:22
Alignment explanation
Indices: 9117849--9117897 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
9117839 AAATAGATTA
*
9117849 GTCAATGTAAAACATTTTCCTG
1 GTCAATGTAAAACATTTTCATG
9117871 GTCAATGTAAAACATTTTCATG
1 GTCAATGTAAAACATTTTCATG
9117893 GTCAA
1 GTCAA
9117898 CAGAATTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (22 bp):
GTCAATGTAAAACATTTTCATG
Found at i:9118155 original size:26 final size:26
Alignment explanation
Indices: 9118116--9118172 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
9118106 TATAAAAATA
*
9118116 ATATTATTACAATA-AT-ATACTCATTT
1 ATATTATAACAATATATGATACT-A-TT
*
9118142 ATATTATAATAATATATGATACTATT
1 ATATTATAACAATATATGATACTATT
9118168 ATATT
1 ATATT
9118173 CTTATTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 19 0.70
27 3 0.11
28 5 0.19
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (26 bp):
ATATTATAACAATATATGATACTATT
Found at i:9118366 original size:24 final size:25
Alignment explanation
Indices: 9118322--9118372 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
9118312 TAAAAATTCC
* *
9118322 TTAAAATATATTTATTAATAAT-TT
1 TTAAAATATATATAATAATAATATT
9118346 TTAAAATATAATATAAT-ATAATATT
1 TTAAAATAT-ATATAATAATAATATT
9118371 TT
1 TT
9118373 TATTTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TTAAAATATATATAATAATAATATT
Found at i:9118407 original size:37 final size:34
Alignment explanation
Indices: 9118350--9118447 Score: 117
Period size: 37 Copynumber: 2.8 Consensus size: 34
9118340 TAATTTTTAA
*
9118350 AATATAATATAATATAATATTTTTATTTTTATAG
1 AATATAATATAATATAATATTTTTATTTTAATAG
* *
9118384 ATATTTAATATAATTTATCATATTTTTATTTTAATAG
1 A-ATATAATATAA--TATAATATTTTTATTTTAATAG
* *
9118421 AATATAATAGAGT-TAATATTTTTATTT
1 AATATAATATAATATAATATTTTTATTT
9118448 ATAAAATTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
33 13 0.24
34 2 0.04
35 10 0.19
36 8 0.15
37 21 0.39
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (34 bp):
AATATAATATAATATAATATTTTTATTTTAATAG
Found at i:9124108 original size:2 final size:2
Alignment explanation
Indices: 9124095--9124208 Score: 210
Period size: 2 Copynumber: 57.0 Consensus size: 2
9124085 TGCATTTTTC
* *
9124095 AT AT AC AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9124137 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9124179 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9124209 TGCATTCTAG
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 108 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9136228 original size:9 final size:9
Alignment explanation
Indices: 9136216--9136321 Score: 55
Period size: 9 Copynumber: 12.3 Consensus size: 9
9136206 TTTTTATTTT
9136216 TTATATTAA
1 TTATATTAA
9136225 TTATA-T-A
1 TTATATTAA
* *
9136232 -TATAATAT
1 TTATATTAA
**
9136240 TTATATTTT
1 TTATATTAA
9136249 TTATATTAA
1 TTATATTAA
9136258 TTATA-TATA
1 TTATATTA-A
* **
9136267 TAATATTTT
1 TTATATTAA
9136276 TTATATTAA
1 TTATATTAA
9136285 TTATA-TATA
1 TTATATTA-A
*
9136294 TAATATT--
1 TTATATTAA
**
9136301 TTATATTTT
1 TTATATTAA
9136310 TTATATTAA
1 TTATATTAA
9136319 TTA
1 TTA
9136322 CATAATACAA
Statistics
Matches: 73, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
6 4 0.05
7 8 0.11
8 5 0.07
9 54 0.74
10 2 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTATATTAA
Found at i:9136235 original size:33 final size:33
Alignment explanation
Indices: 9136193--9136321 Score: 198
Period size: 33 Copynumber: 4.1 Consensus size: 33
9136183 GTCTCGATTA
9136193 TATATATATAATATTTTTATTTTTTATATTAAT
1 TATATATATAATATTTTTATTTTTTATATTAAT
*
9136226 TATATATATAATATTTATATTTTTTATATTAAT
1 TATATATATAATATTTTTATTTTTTATATTAAT
9136259 TATATATAT-A-A----TATTTTTTATATTAAT
1 TATATATATAATATTTTTATTTTTTATATTAAT
9136286 TATATATATAATATTTTATATTTTTTATATTAAT
1 TATATATATAATATTTT-TATTTTTTATATTAAT
9136320 TA
1 TA
9136322 CATAATACAA
Statistics
Matches: 88, Mismatches: 1, Indels: 13
0.86 0.01 0.13
Matches are distributed among these distances:
27 25 0.28
28 1 0.01
29 1 0.01
31 1 0.01
32 1 0.01
33 41 0.47
34 18 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (33 bp):
TATATATATAATATTTTTATTTTTTATATTAAT
Found at i:9136240 original size:27 final size:27
Alignment explanation
Indices: 9136210--9136302 Score: 132
Period size: 27 Copynumber: 3.2 Consensus size: 27
9136200 ATAATATTTT
9136210 TATTTTTTATATTAATTATATATATAATATTTA
1 TATTTTTTATATTAA-T-TATATAT-ATA---A
9136243 TATTTTTTATATTAATTATATATATAA
1 TATTTTTTATATTAATTATATATATAA
9136270 TATTTTTTATATTAATTATATATATAA
1 TATTTTTTATATTAATTATATATATAA
9136297 TATTTT
1 TATTTT
9136303 ATATTTTTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
27 34 0.57
30 3 0.05
31 7 0.12
32 1 0.02
33 15 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TATTTTTTATATTAATTATATATATAA
Found at i:9136378 original size:16 final size:17
Alignment explanation
Indices: 9136359--9136393 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
9136349 CTAGCTTTTA
9136359 TAATTATGTATGTG-TT
1 TAATTATGTATGTGCTT
9136375 TAATTATGTATGTGCTT
1 TAATTATGTATGTGCTT
9136392 TA
1 TA
9136394 TTTTGGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.03, G:0.17, T:0.54
Consensus pattern (17 bp):
TAATTATGTATGTGCTT
Found at i:9146536 original size:15 final size:15
Alignment explanation
Indices: 9146513--9146547 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9146503 TATGGGCATG
* *
9146513 CAGCCACAACAGCAA
1 CAGCAACAACAACAA
9146528 CAGCAACAACAACAA
1 CAGCAACAACAACAA
9146543 CAGCA
1 CAGCA
9146548 GCAGCATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.37, G:0.11, T:0.00
Consensus pattern (15 bp):
CAGCAACAACAACAA
Found at i:9148518 original size:17 final size:17
Alignment explanation
Indices: 9148496--9148529 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9148486 CATGGTTTTC
9148496 AGAACCGGACCGGTTAG
1 AGAACCGGACCGGTTAG
9148513 AGAACCGGACCGGTTAG
1 AGAACCGGACCGGTTAG
9148530 CGAAGCGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.35, T:0.12
Consensus pattern (17 bp):
AGAACCGGACCGGTTAG
Found at i:9152430 original size:80 final size:80
Alignment explanation
Indices: 9152314--9152469 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
9152304 TTTGTTATTA
* * * *
9152314 TTTTTTTAACATTTCGGTAAAAAAATTATCTTAAACATTATTATTTCTACCGGTTTTGTTATTAT
1 TTTTGTTAACATTTCGGTAAAAAAACTATCTAAAACATTATTATTTCTACCGATTTTGTTATTAT
9152379 TAGACACTTTATCGG
66 TAGACACTTTATCGG
** * **
9152394 TTTTGTTAACATATTCGGT-AAAACGCTATCTAAAACATTATTTTTTCTATTGATTTTGTTATTA
1 TTTTGTTAACAT-TTCGGTAAAAAAACTATCTAAAACATTATTATTTCTACCGATTTTGTTATTA
* *
9152458 TTGGGCACTTTA
65 TTAGACACTTTA
9152470 CCATAAATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 58 0.91
81 6 0.09
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (80 bp):
TTTTGTTAACATTTCGGTAAAAAAACTATCTAAAACATTATTATTTCTACCGATTTTGTTATTAT
TAGACACTTTATCGG
Found at i:9153027 original size:37 final size:37
Alignment explanation
Indices: 9152967--9153042 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
9152957 TGACAAAAAT
* *
9152967 TAACTCAACCAAAATGGTCAATGCCCTAACATGAAAG
1 TAACTCAACCAAAATGATCAATGCCATAACATGAAAG
* * *
9153004 TAACTCAACCACATTGATTAATGCCATAACATGAAAG
1 TAACTCAACCAAAATGATCAATGCCATAACATGAAAG
9153041 TA
1 TA
9153043 CTTAGGGGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.22
Consensus pattern (37 bp):
TAACTCAACCAAAATGATCAATGCCATAACATGAAAG
Found at i:9154025 original size:18 final size:18
Alignment explanation
Indices: 9154002--9154043 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
9153992 TGAGGAGAAA
9154002 AGCAGCTTACTTGAATAT
1 AGCAGCTTACTTGAATAT
9154020 AGCAGCTTACTTGAATAT
1 AGCAGCTTACTTGAATAT
*
9154038 GGCAGC
1 AGCAGC
9154044 AGTGCAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (18 bp):
AGCAGCTTACTTGAATAT
Found at i:9154791 original size:3 final size:3
Alignment explanation
Indices: 9154783--9154838 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
9154773 TTATAAACAA
9154783 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9154831 AAT AAT AA
1 AAT AAT AA
9154839 ACAAAAAGTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9161616 original size:21 final size:21
Alignment explanation
Indices: 9161557--9161616 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
9161547 GTTTTACGTG
*
9161557 GTTCTTCGGGATACATATGTA
1 GTTCTTCGGGACACATATGTA
* * * * * *
9161578 ATCCTTTGGAACATATATGTT
1 GTTCTTCGGGACACATATGTA
9161599 GTTCTTCGGGACACATAT
1 GTTCTTCGGGACACATAT
9161617 TTGGTCCTTT
Statistics
Matches: 27, Mismatches: 12, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (21 bp):
GTTCTTCGGGACACATATGTA
Found at i:9161616 original size:42 final size:42
Alignment explanation
Indices: 9161557--9161639 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
9161547 GTTTTACGTG
* *
9161557 GTTCTTCGGGATACATATGTAATCCTTTGGAACATATATGTT
1 GTTCTTCGGGACACATATGTAATCCTTTAGAACATATATGTT
* ** *
9161599 GTTCTTCGGGACACATATTTGGTCCTTTAGAATATATATGT
1 GTTCTTCGGGACACATATGTAATCCTTTAGAACATATATGT
9161640 GATCCTTAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.41
Consensus pattern (42 bp):
GTTCTTCGGGACACATATGTAATCCTTTAGAACATATATGTT
Found at i:9161701 original size:23 final size:21
Alignment explanation
Indices: 9161654--9161706 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
9161644 CTTAAGGAGT
*
9161654 GGTCATTCGGGACATATATGT
1 GGTCATTCGGGACATATATGC
* *
9161675 GGTCATTCGGGATATTTCTATGC
1 GGTCATTCGGGACA--TATATGC
9161698 GGTCATTCG
1 GGTCATTCG
9161707 AAACAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 13 0.48
23 14 0.52
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.36
Consensus pattern (21 bp):
GGTCATTCGGGACATATATGC
Found at i:9168115 original size:16 final size:16
Alignment explanation
Indices: 9168096--9168129 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
9168086 TCAGAGCATA
9168096 TAATATACAAATCTCT
1 TAATATACAAATCTCT
9168112 TAATATACAAATCTCT
1 TAATATACAAATCTCT
9168128 TA
1 TA
9168130 GTACATACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATATACAAATCTCT
Found at i:9168452 original size:18 final size:18
Alignment explanation
Indices: 9168424--9168468 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
9168414 ATATAATCTC
* *
9168424 ATTATCCTTATTATTATT
1 ATTATCATTATTAGTATT
*
9168442 CTTATCATTATTAGTATT
1 ATTATCATTATTAGTATT
9168460 ATTATCATT
1 ATTATCATT
9168469 CATATCTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.58
Consensus pattern (18 bp):
ATTATCATTATTAGTATT
Found at i:9168752 original size:28 final size:28
Alignment explanation
Indices: 9168712--9168783 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 28
9168702 CTTAGAATTA
*
9168712 GTCCCGAATGACCACTTATAACACATAT
1 GTCCCGAAGGACCACTTATAACACATAT
*
9168740 GTCCCAAAGGACCACTTATAACACATAT
1 GTCCCGAAGGACCACTTATAACACATAT
*
9168768 GTCCCGAAGAACCACT
1 GTCCCGAAGGACCACT
9168784 CTTTAAGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.36, C:0.31, G:0.12, T:0.21
Consensus pattern (28 bp):
GTCCCGAAGGACCACTTATAACACATAT
Found at i:9172882 original size:6 final size:6
Alignment explanation
Indices: 9172873--9172933 Score: 113
Period size: 6 Copynumber: 10.2 Consensus size: 6
9172863 AAACATAAAT
*
9172873 ACATAT ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
9172921 ACATAC ACATAC A
1 ACATAC ACATAC A
9172934 TATAATCTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (6 bp):
ACATAC
Found at i:9172971 original size:18 final size:18
Alignment explanation
Indices: 9172944--9172978 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9172934 TATAATCTCA
* *
9172944 TTATCCTTATTATTATTC
1 TTATCATTATTAGTATTC
9172962 TTATCATTATTAGTATT
1 TTATCATTATTAGTATT
9172979 ATCATTCATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.60
Consensus pattern (18 bp):
TTATCATTATTAGTATTC
Found at i:9174123 original size:79 final size:79
Alignment explanation
Indices: 9173988--9174157 Score: 313
Period size: 79 Copynumber: 2.2 Consensus size: 79
9173978 TCCCTAGCTG
9173988 TGGTATCGATACCAATTTTGCATTCGATGTTTTTGTTTCAAGCATGGTACCAATATTGTCCTTAT
1 TGGTATCGATACCAATTTTGCATTCGATGTTTTTGTTTCAAGCATGGTACCAATATTGTCCTTAT
9174053 GGTATCGGTACCCT
66 GGTATCGGTACCCT
* * *
9174067 TGGTACCGATACCAATTTTGCATTCGATGTTTTTGTTTCAAGTATGGTACCGATATTGTCCTTAT
1 TGGTATCGATACCAATTTTGCATTCGATGTTTTTGTTTCAAGCATGGTACCAATATTGTCCTTAT
9174132 GGTATCGGTACCCT
66 GGTATCGGTACCCT
9174146 TGGTATCGATAC
1 TGGTATCGATAC
9174158 TACCTTCCAG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 87 1.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (79 bp):
TGGTATCGATACCAATTTTGCATTCGATGTTTTTGTTTCAAGCATGGTACCAATATTGTCCTTAT
GGTATCGGTACCCT
Found at i:9176728 original size:23 final size:23
Alignment explanation
Indices: 9176670--9176736 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
9176660 AAAATAATTT
*
9176670 CAGAATAGAAAAA-TCATGTTTAC
1 CAGAACAGAAAAACTC-TGTTTAC
* *
9176693 CAGAACTGAAAAACTTTGTTTAC
1 CAGAACAGAAAAACTCTGTTTAC
9176716 CAGAACCAG-AAAACTCTGTTT
1 CAGAA-CAGAAAAACTCTGTTT
9176737 CTACACATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 34 0.92
24 3 0.08
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (23 bp):
CAGAACAGAAAAACTCTGTTTAC
Found at i:9177912 original size:22 final size:22
Alignment explanation
Indices: 9177882--9177923 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
9177872 TGGTTTAGGT
*
9177882 TTTTTATTGGGGCATGTTTGGG
1 TTTTGATTGGGGCATGTTTGGG
9177904 TTTTGATTGGGGCATGTTTG
1 TTTTGATTGGGGCATGTTTG
9177924 TAACAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.10, C:0.05, G:0.36, T:0.50
Consensus pattern (22 bp):
TTTTGATTGGGGCATGTTTGGG
Found at i:9179206 original size:23 final size:23
Alignment explanation
Indices: 9179158--9179240 Score: 96
Period size: 23 Copynumber: 3.7 Consensus size: 23
9179148 TATAATTGCA
* *
9179158 CCGAAATAACACATAGAT-TGTC
1 CCGAAAGACCACATAGATATGTC
*
9179180 CCGAAAGACCACATAGGTATGTC
1 CCGAAAGACCACATAGATATGTC
* * *
9179203 CCGAATGACCACGTAGAAATGTC
1 CCGAAAGACCACATAGATATGTC
*
9179226 CCGAATGACCACATA
1 CCGAAAGACCACATA
9179241 TAAATCTCCT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 15 0.29
23 37 0.71
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (23 bp):
CCGAAAGACCACATAGATATGTC
Found at i:9179245 original size:23 final size:23
Alignment explanation
Indices: 9179167--9179263 Score: 97
Period size: 23 Copynumber: 4.3 Consensus size: 23
9179157 ACCGAAATAA
* *
9179167 CACATAG-ATTGTCCCGAAAGAC
1 CACATAGAAATGTCCCGAATGAC
**
9179189 CACATAGGTATGTCCCGAATGAC
1 CACATAGAAATGTCCCGAATGAC
*
9179212 CACGTAGAAATGTCCCGAATGAC
1 CACATAGAAATGTCCCGAATGAC
* * ** *
9179235 CACATATAAATCTCCTTAAGGAC
1 CACATAGAAATGTCCCGAATGAC
9179258 CACATA
1 CACATA
9179264 TATATTCCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
22 7 0.11
23 55 0.89
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (23 bp):
CACATAGAAATGTCCCGAATGAC
Found at i:9183496 original size:23 final size:23
Alignment explanation
Indices: 9183447--9183552 Score: 117
Period size: 23 Copynumber: 4.7 Consensus size: 23
9183437 TATAATTGCA
9183447 CCGAAGTG-CCACATAG-AATGTC
1 CCGAAG-GACCACATAGAAATGTC
* **
9183469 CCGAAGGACCATATAGGTATGTC
1 CCGAAGGACCACATAGAAATGTC
* *
9183492 TCGAAGGACCACGTAGAAATGTC
1 CCGAAGGACCACATAGAAATGTC
*
9183515 CCGAAGGACCACATAGAAATCTC
1 CCGAAGGACCACATAGAAATGTC
**
9183538 CTTAAGGACCACATA
1 CCGAAGGACCACATA
9183553 TATATTCTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
21 1 0.01
22 13 0.19
23 56 0.80
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (23 bp):
CCGAAGGACCACATAGAAATGTC
Found at i:9183567 original size:21 final size:21
Alignment explanation
Indices: 9183518--9183654 Score: 105
Period size: 21 Copynumber: 6.4 Consensus size: 21
9183508 AAATGTCCCG
* * *
9183518 AAGGACCACATAGAAATCTCCTT
1 AAGGACCACATATATAT-T-CTA
9183541 AAGGACCACATATATATTCTA
1 AAGGACCACATATATATTCTA
9183562 AAGGACCACATATATATTCTA
1 AAGGACCACATATATATTCTA
* * * *
9183583 AAGGACCAAATATGTGTGT-TG
1 AAGGACCACATATATAT-TCTA
* * *
9183604 AAGAACCACATATATGTTCCA
1 AAGGACCACATATATATTCTA
** * * *
9183625 AAGGATTACATATATGTCCCA
1 AAGGACCACATATATATTCTA
9183646 AAGGACCAC
1 AAGGACCAC
9183655 GTAGAACCCT
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
20 1 0.01
21 76 0.81
22 2 0.02
23 15 0.16
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (21 bp):
AAGGACCACATATATATTCTA
Found at i:9187032 original size:27 final size:25
Alignment explanation
Indices: 9186978--9187034 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
9186968 ATTAACATGA
* *
9186978 TTTTTAAAAAGTATTATGTATTATT
1 TTTTTAAAAAGTAATATGTATTAAT
9187003 TTTTTAAAAA-TAATATTGTAATTTAAT
1 TTTTTAAAAAGTAATA-TGT-A-TTAAT
9187030 TTTTT
1 TTTTT
9187035 TGAATTCGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 4 0.15
25 13 0.48
26 1 0.04
27 9 0.33
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (25 bp):
TTTTTAAAAAGTAATATGTATTAAT
Found at i:9192012 original size:2 final size:2
Alignment explanation
Indices: 9192005--9192072 Score: 129
Period size: 2 Copynumber: 34.5 Consensus size: 2
9191995 ATATTTTATG
9192005 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9192047 CT CT CT CT CT CT CT CT CT CT -T CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
9192073 ATTACAAAAT
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 64 0.98
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:9192275 original size:2 final size:2
Alignment explanation
Indices: 9192268--9192382 Score: 223
Period size: 2 Copynumber: 58.0 Consensus size: 2
9192258 CGTTATTTTA
9192268 TC TC TC TC TC TC TC TC TC T- TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9192309 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9192351 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9192383 CTTTTTACAT
Statistics
Matches: 112, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 111 0.99
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:9192293 original size:267 final size:270
Alignment explanation
Indices: 9191801--9192338 Score: 998
Period size: 267 Copynumber: 2.0 Consensus size: 270
9191791 TGCTTTGTTA
9191801 ATTACAAAATAACTAATGAAATGCTGGTGAATTCGAGTAAAGAATTCTATATTCAAACCTGAAGG
1 ATTACAAAATAACTAATGAAATGCTGGTGAATTCGAGTAAAGAATTCTATATTCAAACCTGAAGG
9191866 AAGATAGTGTAGGAGAGATCTAAGGCCAACCTTTGAATTCTGATCCGTTTTGTACACTATATGTT
66 AAGA-AGTGT--GAGAGATCTAAGGCCAACCTTTGAATTCTGATCCGTTTTGTACACTATATGTT
9191931 AGGGAACTTCAACTGTTGTTCCATTTATAGCCATGTCTGAAAAATTCTTTCCGGAAAGCTACGTA
128 AGGGAACTTCAACTGTTGTTCCATTTATAGCCATGTCTGAAAAATTCTTTCCGGAAAGCTACGTA
9191996 TATTTTATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
193 TATTTTATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
9192061 CTCTCT-TCTCTC
258 CTCTCTCTCTCTC
9192073 ATTACAAAATAACTAATGAAATGCTGGTGAATTCGAGTAAAGAATTCTATATTCAAACCTGAAGG
1 ATTACAAAATAACTAATGAAATGCTGGTGAATTCGAGTAAAGAATTCTATATTCAAACCTGAAGG
9192138 AAG-AGTGT-AGAGATCTAAGGCCAACCTTTGAATTCTGATCCGTTTTGTACACTATATGTTAGG
66 AAGAAGTGTGAGAGATCTAAGGCCAACCTTTGAATTCTGATCCGTTTTGTACACTATATGTTAGG
9192201 GAACTTCAACTGTTGTTCCATTTATAGCCATGTCTGAAAAATTCTTTCCGGAAAG-TACGT-TAT
131 GAACTTCAACTGTTGTTCCATTTATAGCCATGTCTGAAAAATTCTTTCCGGAAAGCTACGTATAT
9192264 TTTAT-CTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
196 TTTATGCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
9192328 CTCTCTCTCTC
260 CTCTCTCTCTC
9192339 TCTCTCTCTC
Statistics
Matches: 264, Mismatches: 0, Indels: 10
0.96 0.00 0.04
Matches are distributed among these distances:
264 17 0.06
265 53 0.20
266 11 0.04
267 110 0.42
270 5 0.02
272 68 0.26
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (270 bp):
ATTACAAAATAACTAATGAAATGCTGGTGAATTCGAGTAAAGAATTCTATATTCAAACCTGAAGG
AAGAAGTGTGAGAGATCTAAGGCCAACCTTTGAATTCTGATCCGTTTTGTACACTATATGTTAGG
GAACTTCAACTGTTGTTCCATTTATAGCCATGTCTGAAAAATTCTTTCCGGAAAGCTACGTATAT
TTTATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTC
Found at i:9193110 original size:16 final size:16
Alignment explanation
Indices: 9193089--9193119 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9193079 TTATTGCTTC
9193089 TTGAATGACTTGGAGT
1 TTGAATGACTTGGAGT
9193105 TTGAATGACTTGGAG
1 TTGAATGACTTGGAG
9193120 GTTTAACTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.32, T:0.35
Consensus pattern (16 bp):
TTGAATGACTTGGAGT
Found at i:9195393 original size:14 final size:14
Alignment explanation
Indices: 9195374--9195400 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9195364 CACTCTGTTG
9195374 GAGTCCTGTGATGT
1 GAGTCCTGTGATGT
9195388 GAGTCCTGTGATG
1 GAGTCCTGTGATG
9195401 ATACGACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (14 bp):
GAGTCCTGTGATGT
Found at i:9220915 original size:2 final size:2
Alignment explanation
Indices: 9220908--9220939 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9220898 CGATTTTCTA
9220908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9220940 CGTATGAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9228699 original size:30 final size:31
Alignment explanation
Indices: 9228659--9228726 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
9228649 ATCTAATAAT
9228659 TTAATATGTCAAGGCAATCCTTTAATAACAA
1 TTAATATGTCAAGGCAATCCTTTAATAACAA
* * *
9228690 TTAA-ATGTCAAGTCAATCTTTTAATAATAA
1 TTAATATGTCAAGGCAATCCTTTAATAACAA
*
9228720 ATAATAT
1 TTAATAT
9228727 CCATTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 26 0.81
31 6 0.19
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (31 bp):
TTAATATGTCAAGGCAATCCTTTAATAACAA
Found at i:9236849 original size:24 final size:24
Alignment explanation
Indices: 9236822--9236912 Score: 112
Period size: 24 Copynumber: 3.8 Consensus size: 24
9236812 TCAAATTTGA
* * *
9236822 ATTCTGTTATGATACCTAACCTGG
1 ATTCTGATATGATACATGACCTGG
* *
9236846 ATTCTGATATGATA-TTGACATGG
1 ATTCTGATATGATACATGACCTGG
*
9236869 ATTCTGATCTGATACATGACCTGG
1 ATTCTGATATGATACATGACCTGG
*
9236893 ATTCTGATATGATACTTGAC
1 ATTCTGATATGATACATGAC
9236913 TTGAATTATG
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
23 19 0.33
24 38 0.67
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (24 bp):
ATTCTGATATGATACATGACCTGG
Found at i:9236882 original size:47 final size:48
Alignment explanation
Indices: 9236822--9236912 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
9236812 TCAAATTTGA
* *
9236822 ATTCTGTTATGATACCTAACCTGGATTCTGATATGATA-TTGACATGG
1 ATTCTGATATGATACATAACCTGGATTCTGATATGATACTTGACATGG
* *
9236869 ATTCTGATCTGATACATGACCTGGATTCTGATATGATACTTGAC
1 ATTCTGATATGATACATAACCTGGATTCTGATATGATACTTGAC
9236913 TTGAATTATG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 34 0.87
48 5 0.13
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (48 bp):
ATTCTGATATGATACATAACCTGGATTCTGATATGATACTTGACATGG
Found at i:9239082 original size:13 final size:13
Alignment explanation
Indices: 9239064--9239088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9239054 TCATAACCCG
9239064 ACCCGACCCGTTT
1 ACCCGACCCGTTT
9239077 ACCCGACCCGTT
1 ACCCGACCCGTT
9239089 GACTGTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
ACCCGACCCGTTT
Found at i:9241572 original size:24 final size:24
Alignment explanation
Indices: 9241545--9241635 Score: 121
Period size: 24 Copynumber: 3.8 Consensus size: 24
9241535 TCAAATTTAA
* *
9241545 ATTCTGTTATGATACTTGACCTGG
1 ATTCTGATATGATACTTGACATGG
* *
9241569 ATTCTGATCTGATA-TTGGCATGG
1 ATTCTGATATGATACTTGACATGG
* *
9241592 ATTCTGATCTGATACATGACATGG
1 ATTCTGATATGATACTTGACATGG
9241616 ATTCTGATATGATACTTGAC
1 ATTCTGATATGATACTTGAC
9241636 TTGAATTATG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
23 21 0.36
24 37 0.64
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
ATTCTGATATGATACTTGACATGG
Found at i:9241860 original size:2 final size:2
Alignment explanation
Indices: 9241853--9241878 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9241843 GGATGGGAGC
9241853 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9241879 GTTTTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9243343 original size:32 final size:32
Alignment explanation
Indices: 9243302--9243372 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
9243292 TATGCCTTTG
*
9243302 ATAATAAATATTAGAAAAAAATTG-AGTCCATA
1 ATAATAAATATTAGAAAAAAATTGAACT-CATA
* *
9243334 ATAATAAATATTAGAGAAAATTTGAACTCATA
1 ATAATAAATATTAGAAAAAAATTGAACTCATA
9243366 ATAATAA
1 ATAATAA
9243373 GAATTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 33 0.94
33 2 0.06
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (32 bp):
ATAATAAATATTAGAAAAAAATTGAACTCATA
Found at i:9245735 original size:12 final size:12
Alignment explanation
Indices: 9245706--9245745 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 12
9245696 GTAAAAAAAT
9245706 AAATAATAATAAACA
1 AAAT-ATAAT-AA-A
9245721 AAATATAATAAA
1 AAATATAATAAA
9245733 AAATATAATAAA
1 AAATATAATAAA
9245745 A
1 A
9245746 GAAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 14 0.56
13 2 0.08
14 5 0.20
15 4 0.16
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATATAATAAA
Done.