Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 42 of 62
Found at i:9931500 original size:15 final size:15
Alignment explanation
Indices: 9931480--9931510 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9931470 CAACATATAG
9931480 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
9931495 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
9931510 A
1 A
9931511 TTTAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:9932386 original size:64 final size:62
Alignment explanation
Indices: 9932318--9932474 Score: 179
Period size: 64 Copynumber: 2.5 Consensus size: 62
9932308 TTCAGTGTGT
** *
9932318 ATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAAATGGAAATATCGAATGCAATTAGTGC
1 ATCGATGCATAGG-AGTGCATCGATGCACCCATT-AAAATAAAAACATCGAATGCAATTAGTGC
* ** * *
9932382 ATCGATGCATAAGGAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATGTGATTTGTGT
1 ATCGATGCAT-AGGAGTGCATCGATGCA-CCCATTAAAATAAAAACATCGAATGCAATTAGTGC
* *
9932446 ATCGATGCATGGGTAGTGCATCAATGCAC
1 ATCGATGCATAGG-AGTGCATCGATGCAC
9932475 TTCATGGAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
63 3 0.04
64 69 0.86
65 8 0.10
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (62 bp):
ATCGATGCATAGGAGTGCATCGATGCACCCATTAAAATAAAAACATCGAATGCAATTAGTGC
Found at i:9933694 original size:2 final size:2
Alignment explanation
Indices: 9933687--9933730 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
9933677 GAACATGGGA
9933687 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9933729 AT
1 AT
9933731 GATAAGACAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9939249 original size:23 final size:22
Alignment explanation
Indices: 9939191--9939251 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
9939181 CAACCTTATA
*
9939191 TGGCACTTTGGTGCATTTCTACG
1 TGGCAC-TTGGTGCAATTCTACG
* *
9939214 CGGTACTATGGTGCAATTCTACG
1 TGGCACT-TGGTGCAATTCTACG
9939237 TGGCACTTCGGTGCA
1 TGGCACTT-GGTGCA
9939252 TTTATATGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
22 2 0.06
23 29 0.94
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (22 bp):
TGGCACTTGGTGCAATTCTACG
Found at i:9944591 original size:28 final size:28
Alignment explanation
Indices: 9944538--9944591 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
9944528 TATGAATGAT
* * *
9944538 ATTATATGATTTATATGATGATATGTGG
1 ATTATATGATTTAAATGATCAAATGTGG
9944566 ATTATATGA-TTAAATGAGTCAAATGT
1 ATTATATGATTTAAATGA-TCAAATGT
9944592 TGGTTAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.43
Consensus pattern (28 bp):
ATTATATGATTTAAATGATCAAATGTGG
Found at i:9947888 original size:64 final size:64
Alignment explanation
Indices: 9947746--9947907 Score: 175
Period size: 64 Copynumber: 2.5 Consensus size: 64
9947736 AATTGTTTAG
* * *
9947746 TGTGTATCGATGCATAGGAAGTTCATCGATGCACCCATTAAAAATGGAAATATCGAATGCAATT
1 TGTGTATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAAATGAAAACATCGAATGCAATT
* * * * **
9947810 AGTGCATCGCTGCATAAGGAA-TGCATCGATGCACCGCCTT-AAAATGAAAACATCGAATGTGAT
1 TGTGTATCGATGCAT-AGGAAGTGCATCGATGCACC-CATTAAAAATGAAAACATCGAATGCAAT
9947873 T
64 T
* * * *
9947874 TGTGTATCAATGCATGGGTAGTGAATCGATGCAC
1 TGTGTATCGATGCATAGGAAGTGCATCGATGCAC
9947908 TTCAAGGGAA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
63 3 0.04
64 68 0.86
65 8 0.10
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (64 bp):
TGTGTATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAAATGAAAACATCGAATGCAATT
Found at i:9949018 original size:2 final size:2
Alignment explanation
Indices: 9949011--9949043 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9949001 TGGAAAAATG
9949011 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9949044 GGAAGATGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9953186 original size:31 final size:31
Alignment explanation
Indices: 9953150--9953244 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 31
9953140 TATTTAATAA
* *
9953150 ATGATGTGACACATAATATGTCATCATTTTG
1 ATGATGTGACACATGACATGTCATCATTTTG
* * ** *
9953181 ATGATGTAACTCATGACACATCATCACTTTAG
1 ATGATGTGACACATGACATGTCATCA-TTTTG
* *
9953213 AGGATATGACACATGACATGTCATCATTTTG
1 ATGATGTGACACATGACATGTCATCATTTTG
9953244 A
1 A
9953245 GTGGTTAACA
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
31 25 0.51
32 24 0.49
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (31 bp):
ATGATGTGACACATGACATGTCATCATTTTG
Found at i:9953229 original size:32 final size:32
Alignment explanation
Indices: 9953170--9953272 Score: 81
Period size: 32 Copynumber: 3.3 Consensus size: 32
9953160 ACATAATATG
* *
9953170 TCATCA-TTTTGA-TGATGTAACTCATGACACA
1 TCATCACTTTAGAGTGAT-TAACACATGACACA
* **
9953201 TCATCACTTTAGAG-GATATGACACATGACATG
1 TCATCACTTTAGAGTGAT-TAACACATGACACA
* *
9953233 TCATCA-TTTTGAGTGGTTAACACAT-ACGACA
1 TCATCACTTTAGAGTGATTAACACATGAC-ACA
9953264 TCATCACTT
1 TCATCACTT
9953273 ACGTGATATG
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
30 2 0.04
31 26 0.46
32 28 0.50
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (32 bp):
TCATCACTTTAGAGTGATTAACACATGACACA
Found at i:9953589 original size:10 final size:10
Alignment explanation
Indices: 9953574--9953626 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 10
9953564 CATTTAATAA
9953574 ATAAACGAAC
1 ATAAACGAAC
9953584 ATAAACG---
1 ATAAACGAAC
9953591 A-AAACGAAC
1 ATAAACGAAC
9953600 ATAAACGAAC
1 ATAAACGAAC
9953610 ---AA-GAAC
1 ATAAACGAAC
9953616 ATAAACGAAC
1 ATAAACGAAC
9953626 A
1 A
9953627 AATTTTTTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
6 9 0.26
7 3 0.09
9 3 0.09
10 20 0.57
ACGTcount: A:0.62, C:0.19, G:0.11, T:0.08
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:9953610 original size:26 final size:26
Alignment explanation
Indices: 9953574--9953626 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
9953564 CATTTAATAA
9953574 ATAAACGAACATA-AACGA-AAACGAAC
1 ATAAACGAACA-AGAAC-ATAAACGAAC
9953600 ATAAACGAACAAGAACATAAACGAAC
1 ATAAACGAACAAGAACATAAACGAAC
9953626 A
1 A
9953627 AATTTTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.62, C:0.19, G:0.11, T:0.08
Consensus pattern (26 bp):
ATAAACGAACAAGAACATAAACGAAC
Found at i:9953625 original size:16 final size:17
Alignment explanation
Indices: 9953577--9953627 Score: 88
Period size: 16 Copynumber: 3.1 Consensus size: 17
9953567 TTAATAAATA
9953577 AACGAACATAAACGAA-
1 AACGAACATAAACGAAC
9953593 AACGAACATAAACGAAC
1 AACGAACATAAACGAAC
9953610 AA-GAACATAAACGAAC
1 AACGAACATAAACGAAC
9953626 AA
1 AA
9953628 ATTTTTTTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 32 0.94
17 2 0.06
ACGTcount: A:0.63, C:0.20, G:0.12, T:0.06
Consensus pattern (17 bp):
AACGAACATAAACGAAC
Found at i:9955570 original size:13 final size:13
Alignment explanation
Indices: 9955544--9955580 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
9955534 TTTCATGATT
*
9955544 GTTG-AATTGCAA
1 GTTGTAATTGTAA
9955556 GTTGTAATTGTAA
1 GTTGTAATTGTAA
9955569 GTTGTAATTGTA
1 GTTGTAATTGTA
9955581 TATGATTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.30, C:0.03, G:0.24, T:0.43
Consensus pattern (13 bp):
GTTGTAATTGTAA
Found at i:9956069 original size:18 final size:18
Alignment explanation
Indices: 9956037--9956187 Score: 76
Period size: 18 Copynumber: 8.0 Consensus size: 18
9956027 TAATATAAAA
9956037 TTATA-TATAAACTATAT
1 TTATATTATAAACTATAT
*
9956054 TTATATTATCAACTATA-
1 TTATATTATAAACTATAT
*
9956071 TAATTATTATAAACTATAT
1 TTA-TATTATAAACTATAT
* * * *
9956090 ATATAAATTATATTTA-TGTGAA
1 -T-TATATTATA--AACTAT-AT
*
9956112 CTATATATATAAACTATGTAT
1 TTATAT-TATAAACTA--TAT
* *
9956133 ATAAAATTATAAACTATAT
1 -TTATATTATAAACTATAT
9956152 TTATATTATAAACTATA-
1 TTATATTATAAACTATAT
* *
9956169 TAATTATTATAAGCTATAT
1 TTA-TATTATAAACTATAT
9956188 ATAAAAATTA
Statistics
Matches: 99, Mismatches: 20, Indels: 28
0.67 0.14 0.19
Matches are distributed among these distances:
17 9 0.09
18 51 0.52
19 4 0.04
20 12 0.12
21 17 0.17
22 6 0.06
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (18 bp):
TTATATTATAAACTATAT
Found at i:9956101 original size:11 final size:11
Alignment explanation
Indices: 9956017--9956102 Score: 59
Period size: 11 Copynumber: 7.5 Consensus size: 11
9956007 AAAATAATAA
*
9956017 TATATATATAT
1 TATATATAAAT
*
9956028 AATATA-AAAT
1 TATATATAAAT
*
9956038 TATATATAAAC
1 TATATATAAAT
* *
9956049 TATATTTATAT
1 TATATATAAAT
9956060 TATCAACTATATAAT
1 TAT--A-TATA-AAT
9956075 TAT-TATAAACT
1 TATATATAAA-T
9956086 ATATATATAAAT
1 -TATATATAAAT
9956098 TATAT
1 TATAT
9956103 TTATGTGAAC
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
10 10 0.17
11 29 0.50
12 4 0.07
13 7 0.12
14 3 0.05
15 5 0.09
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (11 bp):
TATATATAAAT
Found at i:9956136 original size:13 final size:13
Alignment explanation
Indices: 9956078--9956230 Score: 76
Period size: 13 Copynumber: 11.1 Consensus size: 13
9956068 ATATAATTAT
9956078 TATAAACTATATA
1 TATAAACTATATA
*
9956091 TATAAATTATATTTA
1 TATAAACTATA--TA
* *
9956106 TGTGAACTATATA
1 TATAAACTATATA
*
9956119 TATAAACTATGTA
1 TATAAACTATATA
*
9956132 TATAAAAT-TATA
1 TATAAACTATATA
* * *
9956144 AACTATA-TTTATA
1 TA-TAAACTATATA
9956157 TTATAAACTATATAA
1 -TATAAACTATAT-A
9956172 TTATTATAAGCTATATA
1 -TA-TA-AA-CTATATA
* * *
9956189 TAAAAATTATGTTTA
1 TATAAACTA--TATA
* *
9956204 TGTGAACTATATA
1 TATAAACTATATA
9956217 TATAAACTATATA
1 TATAAACTATATA
9956230 T
1 T
9956231 TGTCACGGGC
Statistics
Matches: 104, Mismatches: 24, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
12 5 0.05
13 56 0.54
14 7 0.07
15 23 0.22
16 4 0.04
17 3 0.03
18 6 0.06
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.43
Consensus pattern (13 bp):
TATAAACTATATA
Found at i:9956148 original size:98 final size:98
Alignment explanation
Indices: 9956042--9956226 Score: 334
Period size: 98 Copynumber: 1.9 Consensus size: 98
9956032 TAAAATTATA
* *
9956042 TATAAACTATATTTATATTATCAACTATATAATTATTATAAACTATATATATAAATTATATTTAT
1 TATAAACTATATTTATATTATAAACTATATAATTATTATAAACTATATATAAAAATTATATTTAT
9956107 GTGAACTATATATATAAACTATGTATATAAAAT
66 GTGAACTATATATATAAACTATGTATATAAAAT
* *
9956140 TATAAACTATATTTATATTATAAACTATATAATTATTATAAGCTATATATAAAAATTATGTTTAT
1 TATAAACTATATTTATATTATAAACTATATAATTATTATAAACTATATATAAAAATTATATTTAT
9956205 GTGAACTATATATATAAACTAT
66 GTGAACTATATATATAAACTAT
9956227 ATATTGTCAC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 83 1.00
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (98 bp):
TATAAACTATATTTATATTATAAACTATATAATTATTATAAACTATATATAAAAATTATATTTAT
GTGAACTATATATATAAACTATGTATATAAAAT
Found at i:9956156 original size:21 final size:18
Alignment explanation
Indices: 9956113--9956190 Score: 79
Period size: 18 Copynumber: 4.2 Consensus size: 18
9956103 TTATGTGAAC
9956113 TATATA-TATAAACTATGTA
1 TATATATTATAAACTA--TA
*
9956132 TATAAAATTATAAACTATA
1 TAT-ATATTATAAACTATA
*
9956151 TTTATATTATAAACTATA
1 TATATATTATAAACTATA
*
9956169 TA-ATTATTATAAGCTATA
1 TATA-TATTATAAACTATA
9956187 TATA
1 TATA
9956191 AAAATTATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
17 1 0.02
18 30 0.60
19 8 0.16
20 2 0.04
21 9 0.18
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (18 bp):
TATATATTATAAACTATA
Found at i:9957351 original size:159 final size:160
Alignment explanation
Indices: 9957062--9957382 Score: 635
Period size: 159 Copynumber: 2.0 Consensus size: 160
9957052 GTGACAAGTG
9957062 GTATCAGAACGAGTCATTGTGGGCAAGCAACGATCGTTTCAACCGTGTTTTGGTGGAAGGTGCGA
1 GTATCAGAACGAGTCATTGTGGGCAAGCAACGATCGTTTCAACCGTGTTTTGGTGGAAGGTGCGA
9957127 ATCGGGTAAGTTTGTTTTACTTACTTTCAATCAATTTATTTGATAATTGAGATGGAGCACAGGAG
66 ATCGGGTAAGTTTGTTTTACTTACTTTCAATCAATTTATTTGATAATTGAGATGGAGCACAGGAG
9957192 AAA-GGAGTTTCCGCACGCAAAGGCAAGGA
131 AAAGGGAGTTTCCGCACGCAAAGGCAAGGA
9957221 GTATCAGAACGAGTCATTGTGGGCAAGCAACGATCGTTTCAACCGTGTTTTGGTGGAAGGTGCGA
1 GTATCAGAACGAGTCATTGTGGGCAAGCAACGATCGTTTCAACCGTGTTTTGGTGGAAGGTGCGA
9957286 ATCGGGTAAGTTTGTTTTACTTACTTTCAATCAATTTATTTGATAATTGAGATGGAGCACAGGAG
66 ATCGGGTAAGTTTGTTTTACTTACTTTCAATCAATTTATTTGATAATTGAGATGGAGCACAGGAG
9957351 AAAGGGAGTTTCCGCACGCAAAGGCAAGGA
131 AAAGGGAGTTTCCGCACGCAAAGGCAAGGA
9957381 GT
1 GT
9957383 GCCACGGTGG
Statistics
Matches: 161, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
159 133 0.83
160 28 0.17
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (160 bp):
GTATCAGAACGAGTCATTGTGGGCAAGCAACGATCGTTTCAACCGTGTTTTGGTGGAAGGTGCGA
ATCGGGTAAGTTTGTTTTACTTACTTTCAATCAATTTATTTGATAATTGAGATGGAGCACAGGAG
AAAGGGAGTTTCCGCACGCAAAGGCAAGGA
Found at i:9960104 original size:22 final size:22
Alignment explanation
Indices: 9960079--9960127 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
9960069 CCAAGTTGAT
*
9960079 GTGAACTATGGCACGAAAGATC
1 GTGAACTATGACACGAAAGATC
9960101 GTGAACTATGACACGAAAGATC
1 GTGAACTATGACACGAAAGATC
9960123 GTGAA
1 GTGAA
9960128 GTTACATGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.16, G:0.27, T:0.18
Consensus pattern (22 bp):
GTGAACTATGACACGAAAGATC
Found at i:9961193 original size:79 final size:79
Alignment explanation
Indices: 9961089--9961238 Score: 230
Period size: 79 Copynumber: 1.9 Consensus size: 79
9961079 GGGCGTGACA
*
9961089 ATATGTATAAACTATAAAAAGTATATAGTTTATAAAATATTATTTATATTAATATAGTATATATA
1 ATATGTATAAACTATAAAAAGTATATAGTTTATAAAATATAATTTATATTAATATAGTATATATA
9961154 TATATATAAACTAT
66 TATATATAAACTAT
*** *
9961168 ATATGTATAAACTATATAAAA-TATATAGTTTATATGTTATAATTTATATTAATATAGTGTATAT
1 ATATGTATAAACTATA-AAAAGTATATAGTTTATAAAATATAATTTATATTAATATAGTATATAT
*
9961232 ATGTATA
65 ATATATA
9961239 CATTAGTCTA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 60 0.94
80 4 0.06
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.45
Consensus pattern (79 bp):
ATATGTATAAACTATAAAAAGTATATAGTTTATAAAATATAATTTATATTAATATAGTATATATA
TATATATAAACTAT
Found at i:9961439 original size:7 final size:7
Alignment explanation
Indices: 9961402--9961460 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
9961392 TATATATACA
*
9961402 TTAGGGA
1 TTAGGGT
*
9961409 TTAGGGA
1 TTAGGGT
9961416 TTAGGGT
1 TTAGGGT
***
9961423 TTATTAT
1 TTAGGGT
9961430 TTAGGGT
1 TTAGGGT
9961437 TTAGGGT
1 TTAGGGT
9961444 TTAGGGT
1 TTAGGGT
*
9961451 TTAAGGT
1 TTAGGGT
9961458 TTA
1 TTA
9961461 TATAAACTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:9961730 original size:19 final size:19
Alignment explanation
Indices: 9961680--9961734 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 19
9961670 TAACTTCCCA
*
9961680 AAATTTTCTA-TTCCCTCT
1 AAATTTTCAATTTCCCTCT
*
9961698 AAATTTCCCAATTTCCCTCT
1 AAATTT-TCAATTTCCCTCT
9961718 AAATTTTCAATTTCCCT
1 AAATTTTCAATTTCCCT
9961735 ATATTCTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.19
19 12 0.38
20 14 0.44
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATTTTCAATTTCCCTCT
Found at i:9961851 original size:2 final size:2
Alignment explanation
Indices: 9961844--9961927 Score: 109
Period size: 2 Copynumber: 42.5 Consensus size: 2
9961834 ACTTTGAATA
*
9961844 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT A- AGT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
* * *
9961885 AA AT AT AT AT AT AT AT AT AC AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9961927 A
1 A
9961928 ATTAAACATA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
1 2 0.03
2 68 0.96
3 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (2 bp):
AT
Found at i:9962371 original size:2 final size:2
Alignment explanation
Indices: 9962364--9962426 Score: 92
Period size: 2 Copynumber: 31.5 Consensus size: 2
9962354 TATGTTTAAT
* *
9962364 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9962406 TA TA CT- TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA T
9962427 TATTCAAAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
1 1 0.02
2 53 0.96
3 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9962557 original size:19 final size:20
Alignment explanation
Indices: 9962535--9962579 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
9962525 TTGGGAATAT
9962535 AGGGAAATTAGG-AATTTAG
1 AGGGAAATTAGGAAATTTAG
9962554 AGGGAAATTAGGAAATTTAG
1 AGGGAAATTAGGAAATTTAG
9962574 AGGGAA
1 AGGGAA
9962580 TATAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (20 bp):
AGGGAAATTAGGAAATTTAG
Found at i:9962589 original size:46 final size:45
Alignment explanation
Indices: 9962496--9962589 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 45
9962486 TTTATTTTAT
* *
9962496 TTAGGAATTTAGAGGGAAATTAGGAAATTTTGGGAATATAGGGAAA
1 TTAGGAATTTAGAGGGAAATTAGGAAATTTAGGGAATATA-GAAAA
9962542 TTAGGAATTTAGAGGGAAATTAGGAAATTTAGAGGGAATATA-AAAA
1 TTAGGAATTTAGAGGGAAATTAGGAAATTT--AGGGAATATAGAAAA
9962588 TT
1 TT
9962590 TGGGAAGTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
46 35 0.80
48 9 0.20
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.29
Consensus pattern (45 bp):
TTAGGAATTTAGAGGGAAATTAGGAAATTTAGGGAATATAGAAAA
Found at i:9962971 original size:22 final size:20
Alignment explanation
Indices: 9962946--9962986 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
9962936 TATTCATTGT
9962946 CAAATTAATTATTATTTATTAC
1 CAAATTAATTA-TA-TTATTAC
*
9962968 CAAATTATTTATATTATTA
1 CAAATTAATTATATTATTA
9962987 ATGTAACCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
22 10 0.56
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (20 bp):
CAAATTAATTATATTATTAC
Found at i:9963122 original size:13 final size:13
Alignment explanation
Indices: 9963104--9963130 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9963094 TAATTTACAT
9963104 TTAAATAATTTTA
1 TTAAATAATTTTA
9963117 TTAAATAATTTTA
1 TTAAATAATTTTA
9963130 T
1 T
9963131 ATAACAGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTTTA
Found at i:9963274 original size:16 final size:16
Alignment explanation
Indices: 9963253--9963315 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
9963243 TCATATACAG
9963253 GTCAGGTTAAAAACAT
1 GTCAGGTTAAAAACAT
*
9963269 GTCAGGTTAAAAACAG
1 GTCAGGTTAAAAACAT
*
9963285 GTCAGGTTGAAAACAT
1 GTCAGGTTAAAAACAT
*
9963301 GTCAGGTTGAAAACA
1 GTCAGGTTAAAAACA
9963316 AGTCGGGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (16 bp):
GTCAGGTTAAAAACAT
Found at i:9963285 original size:32 final size:32
Alignment explanation
Indices: 9963249--9963315 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
9963239 CGGATCATAT
9963249 ACAGGTCAGGTTAAAAACATGTCAGGTTAAAA
1 ACAGGTCAGGTTAAAAACATGTCAGGTTAAAA
* *
9963281 ACAGGTCAGGTTGAAAACATGTCAGGTTGAAA
1 ACAGGTCAGGTTAAAAACATGTCAGGTTAAAA
9963313 ACA
1 ACA
9963316 AGTCGGGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (32 bp):
ACAGGTCAGGTTAAAAACATGTCAGGTTAAAA
Found at i:9963433 original size:11 final size:11
Alignment explanation
Indices: 9963419--9963448 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9963409 TAATTCAGGT
*
9963419 TCAGGTTGTTC
1 TCAGGTCGTTC
9963430 TCAGGTCGTTC
1 TCAGGTCGTTC
9963441 TCAGGTCG
1 TCAGGTCG
9963449 GATGCAGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.23, G:0.30, T:0.37
Consensus pattern (11 bp):
TCAGGTCGTTC
Found at i:9974172 original size:27 final size:29
Alignment explanation
Indices: 9974119--9974172 Score: 67
Period size: 27 Copynumber: 1.9 Consensus size: 29
9974109 TTAGAGTTTC
* *
9974119 ACATGAAACATAATATTTAAATTTTAAAA
1 ACATGAAACATAACATTTAAATGTTAAAA
*
9974148 ACAT-AAA-ATAACATTTAACTGTTAA
1 ACATGAAACATAACATTTAAATGTTAA
9974173 TCTGATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 15 0.68
28 3 0.14
29 4 0.18
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (29 bp):
ACATGAAACATAACATTTAAATGTTAAAA
Found at i:9974325 original size:32 final size:32
Alignment explanation
Indices: 9974276--9974338 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
9974266 TAGGTATCTG
9974276 GGTACCCGACATACGGGTACCCGCAAA-ATCCA
1 GGTACCCGACATACGGGTACCCG-AAACATCCA
*
9974308 GGTACCCGA-TTATCGGGTACCCGAAACATCC
1 GGTACCCGACATA-CGGGTACCCGAAACATCC
9974339 GGGTCGGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.33, G:0.22, T:0.16
Consensus pattern (32 bp):
GGTACCCGACATACGGGTACCCGAAACATCCA
Found at i:9974590 original size:32 final size:32
Alignment explanation
Indices: 9974541--9974603 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
9974531 TAGGTATCTG
9974541 GGTACCCGACATACGGGTACCCGCAAA-ATCCA
1 GGTACCCGACATACGGGTACCCG-AAACATCCA
*
9974573 GGTACCCGA-TTATCGGGTACCCGAAACATCC
1 GGTACCCGACATA-CGGGTACCCGAAACATCC
9974604 GGGTCGGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.33, G:0.22, T:0.16
Consensus pattern (32 bp):
GGTACCCGACATACGGGTACCCGAAACATCCA
Found at i:9974619 original size:265 final size:268
Alignment explanation
Indices: 9974141--9974675 Score: 1015
Period size: 265 Copynumber: 2.0 Consensus size: 268
9974131 ATATTTAAAT
9974141 TTTAAAAACATAAAATAACATTTAACTGTTAATCTGATAAAATATGAATACCTATTGATTTTCAA
1 TTTAAAAACATAAAATAACATTTAACTGTTAATCTGATAAAATATGAATACCTATTGATTTTCAA
9974206 GTGATTCTAGTCTTCAAATTTGTGTGTGTTTTTTAATTTAATAATTTGAAAAAAAAAATCTAGGT
66 GTGA-T-TAGTCTTCAAATTTGTGTGTGTTTTTTAATTTAATAATTTGAAAAAAAAAATCTAGGT
9974271 ATCTGGGTACCCGACATACGGGTACCCGCAAAATCCAGGTACCCGATTATCGGGTACCCGAAACA
129 ATCTGGGTACCCGACATACGGGTACCCGCAAAATCCAGGTACCCGATTATCGGGTACCCGAAACA
9974336 TCCGGGTCGGAACACGGACCGAGAAATTACCGA-CCAGATCTGCACACCCCCTAGCGCACATTGG
194 TCCGGGTCGGAACACGGACCGAGAAATTACCGACCCAGATCTGCACA-CCCCTAGCGCACATTGG
9974400 TTTATGCTTGG
258 TTTATGCTTGG
9974411 TTTAAAAACATAAAATAACATTTAACTGTTAATCTGATAAAATATG-ATACCTATTGATTTTCAA
1 TTTAAAAACATAAAATAACATTTAACTGTTAATCTGATAAAATATGAATACCTATTGATTTTCAA
9974475 GTGA-TAGTCTTCAAA-TTGTGTGTGTTTTTTAATTTAATAATTTGAAAAAAAAAATCTAGGTAT
66 GTGATTAGTCTTCAAATTTGTGTGTGTTTTTTAATTTAATAATTTGAAAAAAAAAATCTAGGTAT
9974538 CTGGGTACCCGACATACGGGTACCCGCAAAATCCAGGTACCCGATTATCGGGTACCCGAAACATC
131 CTGGGTACCCGACATACGGGTACCCGCAAAATCCAGGTACCCGATTATCGGGTACCCGAAACATC
9974603 CGGGTCGGAACACGGACCGAGAAATTACCGACCCAGATCTGCACACCCCTAGCGCACATTGGTTT
196 CGGGTCGGAACACGGACCGAGAAATTACCGACCCAGATCTGCACACCCCTAGCGCACATTGGTTT
9974668 ATGCTTGG
261 ATGCTTGG
9974676 AGTGCGCAAT
Statistics
Matches: 264, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
265 172 0.65
266 24 0.09
269 22 0.08
270 46 0.17
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (268 bp):
TTTAAAAACATAAAATAACATTTAACTGTTAATCTGATAAAATATGAATACCTATTGATTTTCAA
GTGATTAGTCTTCAAATTTGTGTGTGTTTTTTAATTTAATAATTTGAAAAAAAAAATCTAGGTAT
CTGGGTACCCGACATACGGGTACCCGCAAAATCCAGGTACCCGATTATCGGGTACCCGAAACATC
CGGGTCGGAACACGGACCGAGAAATTACCGACCCAGATCTGCACACCCCTAGCGCACATTGGTTT
ATGCTTGG
Found at i:9975220 original size:21 final size:21
Alignment explanation
Indices: 9975196--9975236 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9975186 ATTATTCTAT
* *
9975196 TAAAAGAATTGGTATATTTAA
1 TAAAACAATTGGTACATTTAA
*
9975217 TAAAACATTTGGTACATTTA
1 TAAAACAATTGGTACATTTA
9975237 GACACACCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (21 bp):
TAAAACAATTGGTACATTTAA
Found at i:9979452 original size:19 final size:19
Alignment explanation
Indices: 9979416--9979453 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9979406 AGTCAACTCT
**
9979416 AGTCAAAGTCAATGGGTCG
1 AGTCAAAGTCAACAGGTCG
9979435 AGTCAAAGTCAACAGGTCG
1 AGTCAAAGTCAACAGGTCG
9979454 GTCGGGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.18
Consensus pattern (19 bp):
AGTCAAAGTCAACAGGTCG
Found at i:9979564 original size:23 final size:23
Alignment explanation
Indices: 9979487--9979569 Score: 58
Period size: 23 Copynumber: 3.3 Consensus size: 23
9979477 TCAGGTCAAT
** * *
9979487 GGTTCGGGTCAGGTTGACAGTTCA
1 GGTT-GGGTCAGGTCAACGGTTCG
*
9979511 GGTTGGGTCAGCTCAACGGTTCGGGTTG
1 GGTTGGGTCAGGTCAACGGTTC-----G
9979539 GGTTGGGTCAGGTCAACGGTTCG
1 GGTTGGGTCAGGTCAACGGTTCG
*
9979562 GGTCGGGT
1 GGTTGGGT
9979570 TGGGACAGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
23 22 0.47
24 4 0.09
28 21 0.45
ACGTcount: A:0.12, C:0.17, G:0.43, T:0.28
Consensus pattern (23 bp):
GGTTGGGTCAGGTCAACGGTTCG
Found at i:9979583 original size:33 final size:28
Alignment explanation
Indices: 9979511--9979573 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
9979501 TGACAGTTCA
* *
9979511 GGTTGGGTCAGCTCAACGGTTCGGGTTG
1 GGTTGGGTCAGGTCAACGGTTCGGGTCG
9979539 GGTTGGGTCAGGTCAACGGTTCGGGTCG
1 GGTTGGGTCAGGTCAACGGTTCGGGTCG
9979567 GGTTGGG
1 GGTTGGG
9979574 ACAGTTCAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.10, C:0.16, G:0.48, T:0.27
Consensus pattern (28 bp):
GGTTGGGTCAGGTCAACGGTTCGGGTCG
Found at i:9986115 original size:29 final size:31
Alignment explanation
Indices: 9986055--9986119 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 31
9986045 TTTGTTTAAA
*
9986055 TTTTAAAAAGAATATAATTAATTTATATATT
1 TTTTAAAAAGAATATAATTAATTTATAGATT
* *
9986086 TTTTAAAAA-ATTATAATTATTTTA-AGATT
1 TTTTAAAAAGAATATAATTAATTTATAGATT
9986115 TTTTA
1 TTTTA
9986120 TTTGTTTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 9 0.29
30 13 0.42
31 9 0.29
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
TTTTAAAAAGAATATAATTAATTTATAGATT
Found at i:9987995 original size:23 final size:23
Alignment explanation
Indices: 9987959--9988027 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
9987949 CACTACAGCT
*
9987959 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * * *
9987982 CGTAGAATTTCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
*
9988005 CTTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
9988028 TATAAGATGT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:9989523 original size:13 final size:13
Alignment explanation
Indices: 9989493--9989536 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
9989483 TCTATGATGC
**
9989493 GCATTTATGACAC
1 GCATTTATGACGT
*
9989506 ACATTTATGACGT
1 GCATTTATGACGT
9989519 GCATTTATGACGT
1 GCATTTATGACGT
*
9989532 TCATT
1 GCATT
9989537 GAGCGTCATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (13 bp):
GCATTTATGACGT
Found at i:9989621 original size:84 final size:84
Alignment explanation
Indices: 9989519--9989672 Score: 197
Period size: 84 Copynumber: 1.8 Consensus size: 84
9989509 TTTATGACGT
* * * *
9989519 GCATTTATGACGTTCATTGAGCGTCATTGAAGC-CCCTGTCA-TAAATTAAGATGACACACATTT
1 GCATGTATGACGTTCATTGAGCGTCATTGAAGCACAC-GTCATTAAA-AAAGATGACACACATTC
9989582 GTGTGTCATAAATATATGACA
64 GTGTGTCATAAATATATGACA
* * *
9989603 GCATGTATGAC-TTACATTGCGTGTCATTGAATCACACGTCATTAAAAAAGATGACACACATTCG
1 GCATGTATGACGTT-CATTGAGCGTCATTGAAGCACACGTCATTAAAAAAGATGACACACATTCG
9989667 TGTGTC
65 TGTGTC
9989673 GTGATTGTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
83 2 0.03
84 52 0.87
85 6 0.10
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (84 bp):
GCATGTATGACGTTCATTGAGCGTCATTGAAGCACACGTCATTAAAAAAGATGACACACATTCGT
GTGTCATAAATATATGACA
Found at i:9994147 original size:19 final size:19
Alignment explanation
Indices: 9994123--9994172 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
9994113 CCCTTTAGGA
9994123 GTGTATCGGTACACTACGG
1 GTGTATCGGTACACTACGG
*
9994142 GTGTATCTGTACACTACGG
1 GTGTATCGGTACACTACGG
9994161 GTGTATCGGTAC
1 GTGTATCGGTAC
9994173 CCAAATTAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (19 bp):
GTGTATCGGTACACTACGG
Found at i:9997930 original size:23 final size:23
Alignment explanation
Indices: 9997891--9997954 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
9997881 CAGCTCGTAT
*
9997891 AAATGCACTGAAA-TGCCACATAG
1 AAATGCAC-CAAAGTGCCACATAG
* * *
9997914 AATTGCACCATAGTGCCGCATAG
1 AAATGCACCAAAGTGCCACATAG
9997937 AAATGCACCAAAGTGCCA
1 AAATGCACCAAAGTGCCA
9997955 TATAAGATGT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 2 0.06
23 31 0.94
ACGTcount: A:0.39, C:0.25, G:0.19, T:0.17
Consensus pattern (23 bp):
AAATGCACCAAAGTGCCACATAG
Found at i:10004702 original size:13 final size:13
Alignment explanation
Indices: 10004684--10004713 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10004674 GTTTTATCTT
*
10004684 CTTTTCACTTTTA
1 CTTTTCACTATTA
10004697 CTTTTCACTATTA
1 CTTTTCACTATTA
10004710 CTTT
1 CTTT
10004714 CTTTCATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (13 bp):
CTTTTCACTATTA
Found at i:10011550 original size:22 final size:21
Alignment explanation
Indices: 10011519--10011579 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
10011509 TTAATAAAAA
*
10011519 AATATAATTTAATTATATTCAT
1 AATAAAATTTAATTATATT-AT
* * *
10011541 ATTAAAATTTAAATAAATTAT
1 AATAAAATTTAATTATATTAT
*
10011562 AATAAAAGATTAATTATA
1 AATAAAA-TTTAATTATA
10011580 AATAGTTCAT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 8 0.27
22 22 0.73
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
AATAAAATTTAATTATATTAT
Found at i:10011891 original size:16 final size:18
Alignment explanation
Indices: 10011851--10011892 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10011841 TGTAAATTAA
*
10011851 AAATATATTAATTATTTT
1 AAATTTATTAATTATTTT
10011869 AAATTTATTAA-TATTTT
1 AAATTTATTAATTATTTT
10011886 -AATTTAT
1 AAATTTAT
10011893 CAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.30
17 6 0.26
18 10 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AAATTTATTAATTATTTT
Found at i:10012305 original size:20 final size:20
Alignment explanation
Indices: 10012259--10012306 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
10012249 AACGAACCTT
* *
10012259 AATTTACGTTATAAAATATA
1 AATTTATGTTATAAAATACA
10012279 AATTTATGTTATAAAATACA
1 AATTTATGTTATAAAATACA
10012299 AATTTATG
1 AATTTATG
10012307 AATTAATAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (20 bp):
AATTTATGTTATAAAATACA
Found at i:10016671 original size:16 final size:16
Alignment explanation
Indices: 10016652--10016684 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
10016642 TGAGCACTCC
10016652 ATTGGCGAATCACTTT
1 ATTGGCGAATCACTTT
10016668 ATTGGCGAATCACTTT
1 ATTGGCGAATCACTTT
10016684 A
1 A
10016685 AGCTTTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (16 bp):
ATTGGCGAATCACTTT
Found at i:10018021 original size:21 final size:21
Alignment explanation
Indices: 10017972--10018035 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
10017962 CATATGAAAT
*
10017972 TTGTCCCGAAGGACCTGTGAA
1 TTGTCCCGAAGGACCTATGAA
*
10017993 TATGTCCCGAAGGACCTATGAG
1 T-TGTCCCGAAGGACCTATGAA
*
10018015 TTGTCCCAAAGGACCTATGAA
1 TTGTCCCGAAGGACCTATGAA
10018036 ACCCTCGACT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 19 0.50
22 19 0.50
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAA
Found at i:10018335 original size:14 final size:15
Alignment explanation
Indices: 10018308--10018336 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10018298 ATATCATATA
10018308 TCTTATGTTTTATGC
1 TCTTATGTTTTATGC
10018323 TCTTATG-TTTATGC
1 TCTTATGTTTTATGC
10018337 ATATCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (15 bp):
TCTTATGTTTTATGC
Found at i:10026533 original size:22 final size:22
Alignment explanation
Indices: 10026483--10026539 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
10026473 TAAATACAAT
**
10026483 AAATAATATTA--TTTATCATA
1 AAATAATATTATTTTTAAAATA
10026503 AAACTTAATATTATTTTTAAAATA
1 AAA--TAATATTATTTTTAAAATA
10026527 AAATAAT-TTATTT
1 AAATAATATTATTT
10026540 ATTATTAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 3 0.10
21 6 0.19
22 12 0.39
24 10 0.32
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATAATATTATTTTTAAAATA
Found at i:10026883 original size:22 final size:23
Alignment explanation
Indices: 10026852--10026896 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
10026842 GATTATTTTT
10026852 TTATAATATTACAAATA-TAATA
1 TTATAATATTACAAATATTAATA
*
10026874 TTATATTATTACAAATATTAATA
1 TTATAATATTACAAATATTAATA
10026897 AATATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
TTATAATATTACAAATATTAATA
Found at i:10026901 original size:22 final size:22
Alignment explanation
Indices: 10026858--10026901 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10026848 TTTTTTATAA
*
10026858 TATTACAAATATAATATTATAT
1 TATTACAAATATAATATAATAT
10026880 TATTACAAATATTAATA-AATAT
1 TATTACAAATA-TAATATAATAT
10026902 ATTTTAACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTACAAATATAATATAATAT
Found at i:10026970 original size:24 final size:25
Alignment explanation
Indices: 10026925--10026971 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
10026915 TAATAATTAT
*
10026925 TATTTTGATTAAAATGATATTAAAA
1 TATTTTGATTAAAATGAAATTAAAA
* *
10026950 TATTTT-ATTAATATTAAATTAA
1 TATTTTGATTAAAATGAAATTAA
10026972 TAAAATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
TATTTTGATTAAAATGAAATTAAAA
Found at i:10030608 original size:26 final size:27
Alignment explanation
Indices: 10030579--10030637 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 27
10030569 TCATATCGTT
*
10030579 ATAAATAATTATATTT-TTTTAAATAA
1 ATAAATAATTATATTTAATTTAAATAA
10030605 ATAAATAATTATATTTAAATTTAAATAA
1 ATAAATAATTATATTT-AATTTAAATAA
10030633 A-AAAT
1 ATAAAT
10030638 TAAAGAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 16 0.53
27 4 0.13
28 10 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
ATAAATAATTATATTTAATTTAAATAA
Found at i:10030621 original size:22 final size:22
Alignment explanation
Indices: 10030579--10030639 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
10030569 TCATATCGTT
* *
10030579 ATAAATAATTATATT-TTTTTAA
1 ATAAATAAATA-ATTATATTTAA
10030601 ATAAATAAATAATTATATTTAA
1 ATAAATAAATAATTATATTTAA
*
10030623 ATTTAAATAAAAAATTA
1 A--TAAATAAATAATTA
10030640 AAGAAATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.52
24 13 0.39
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAAATAAATAATTATATTTAA
Found at i:10033734 original size:45 final size:44
Alignment explanation
Indices: 10033685--10033774 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 44
10033675 CAAATGACTG
*
10033685 TTAATATTATTCAACAAAAGTTTGCTATAAAAAATTATCATTATA
1 TTAATATTATTCAACAAAAGTTTACTATAAAAAA-TATCATTATA
* * *
10033730 TTAATATTATTCAATAAAAGTTTACTCTAAAAAATATTATTATA
1 TTAATATTATTCAACAAAAGTTTACTATAAAAAATATCATTATA
10033774 T
1 T
10033775 ACATTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 10 0.24
45 31 0.76
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (44 bp):
TTAATATTATTCAACAAAAGTTTACTATAAAAAATATCATTATA
Found at i:10036164 original size:15 final size:15
Alignment explanation
Indices: 10036144--10036199 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
10036134 TAACCGGTTT
10036144 CGATTTTAAAAAAAC
1 CGATTTTAAAAAAAC
*
10036159 CGATTTTTTTAAAAAAC
1 CGA--TTTTAAAAAAAC
* *
10036176 CGGTTATAAAAAAAC
1 CGATTTTAAAAAAAC
*
10036191 TGATTTTAA
1 CGATTTTAA
10036200 TATTATTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
15 19 0.59
17 13 0.41
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (15 bp):
CGATTTTAAAAAAAC
Found at i:10036665 original size:21 final size:21
Alignment explanation
Indices: 10036639--10036695 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
10036629 TTTTACACTT
10036639 AGGGAACCGATTCCCTATGAG
1 AGGGAACCGATTCCCTATGAG
10036660 AGGGAACCGATTCCCTATGAG
1 AGGGAACCGATTCCCTATGAG
* *
10036681 AGGGTACTGATTCCC
1 AGGGAACCGATTCCC
10036696 CCACGCTCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (21 bp):
AGGGAACCGATTCCCTATGAG
Found at i:10036912 original size:13 final size:13
Alignment explanation
Indices: 10036891--10036945 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
10036881 AAGTTCGATA
*
10036891 AATTCAAATACTT
1 AATTGAAATACTT
10036904 AATTGAAATACTT
1 AATTGAAATACTT
* *
10036917 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
10036931 AATTGAAATACTT
1 AATTGAAATACTT
10036944 AA
1 AA
10036946 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:10037027 original size:32 final size:33
Alignment explanation
Indices: 10036931--10037029 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
10036921 AACTCAACAT
* * *
10036931 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
10036964 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
10036997 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
10037029 A
1 A
10037030 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:10037048 original size:21 final size:21
Alignment explanation
Indices: 10037024--10037065 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
10037014 ACTTCAAGTT
10037024 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
10037045 CGATAATTGAAATAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
10037066 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:10039385 original size:12 final size:12
Alignment explanation
Indices: 10039368--10039413 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
10039358 TCCAGATAAA
10039368 AACCGGTTTTTT
1 AACCGGTTTTTT
10039380 AACCGGTTTTTTT
1 AACCGG-TTTTTT
10039393 CAAACCGGTTTTTT
1 --AACCGGTTTTTT
*
10039407 ATCCGGT
1 AACCGGT
10039414 AAAAAAACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 12 0.40
13 6 0.20
14 6 0.20
15 6 0.20
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (12 bp):
AACCGGTTTTTT
Found at i:10039398 original size:15 final size:14
Alignment explanation
Indices: 10039367--10039406 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
10039357 TTCCAGATAA
10039367 AAACCGG-TTTTTT
1 AAACCGGTTTTTTT
10039380 -AACCGGTTTTTTT
1 AAACCGGTTTTTTT
10039393 CAAACCGGTTTTTT
1 -AAACCGGTTTTTT
10039407 ATCCGGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 6 0.25
15 12 0.50
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (14 bp):
AAACCGGTTTTTTT
Found at i:10043837 original size:54 final size:54
Alignment explanation
Indices: 10043773--10043881 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
10043763 CACCTCAACA
10043773 AAACGGGTAGCAGAAAGAAAAAATATACATCTTCTAGAGGTTACTAGGTCTCTT
1 AAACGGGTAGCAGAAAGAAAAAATATACATCTTCTAGAGGTTACTAGGTCTCTT
*
10043827 AAACGGGTAGCAGAAAGGAAAAATATACATCTTCTAGAGGTTACTAGGTCTCTT
1 AAACGGGTAGCAGAAAGAAAAAATATACATCTTCTAGAGGTTACTAGGTCTCTT
10043881 A
1 A
10043882 TGTTTGCTGC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (54 bp):
AAACGGGTAGCAGAAAGAAAAAATATACATCTTCTAGAGGTTACTAGGTCTCTT
Found at i:10044323 original size:51 final size:51
Alignment explanation
Indices: 10044247--10044347 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
10044237 TAAGGGGGAG
* * *
10044247 AGTTACAAGGAATTTCAGCCTGTTCAAACCAATATTTCTTTACAGCCTATT
1 AGTTACAAGGAATTTCAACATGTTCAAACCAATATTTCTTTACAACCTATT
*
10044298 AGTTACAAGGAATTTCAACATGTTCAAACCGATATTTCTTTACAACCTAT
1 AGTTACAAGGAATTTCAACATGTTCAAACCAATATTTCTTTACAACCTAT
10044348 CCTTTCCTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.35
Consensus pattern (51 bp):
AGTTACAAGGAATTTCAACATGTTCAAACCAATATTTCTTTACAACCTATT
Found at i:10051904 original size:13 final size:13
Alignment explanation
Indices: 10051886--10051944 Score: 64
Period size: 13 Copynumber: 4.2 Consensus size: 13
10051876 ACCGGTCATA
10051886 ACCCGACCCGTTG
1 ACCCGACCCGTTG
10051899 ACCCGACCTAACCTGTTG
1 ACCCGA-C---CC-GTTG
*
10051917 ACCCAACCCGTTG
1 ACCCGACCCGTTG
10051930 ACCCGACCCGTTG
1 ACCCGACCCGTTG
10051943 AC
1 AC
10051945 AGTTGACCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 24 0.62
14 3 0.08
17 3 0.08
18 9 0.23
ACGTcount: A:0.20, C:0.44, G:0.19, T:0.17
Consensus pattern (13 bp):
ACCCGACCCGTTG
Found at i:10053037 original size:18 final size:18
Alignment explanation
Indices: 10053014--10053052 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
10053004 TGTTCGAAAT
*
10053014 GATTGAAGTAAATGATAA
1 GATTGAAGTAAATAATAA
*
10053032 GATTGAATTAAATAATAA
1 GATTGAAGTAAATAATAA
10053050 GAT
1 GAT
10053053 CGGATGGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (18 bp):
GATTGAAGTAAATAATAA
Found at i:10054275 original size:24 final size:24
Alignment explanation
Indices: 10054157--10054272 Score: 162
Period size: 24 Copynumber: 4.8 Consensus size: 24
10054147 TCGATTTTGA
10054157 ATTCTGATCTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
*
10054181 ATTCTGATCTGATA-TCTGACATAG
1 ATTCTGATCTGATACT-TGACATGG
* *
10054205 ATTCTGATCTGATAATTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
*
10054229 ATTCTGATCTGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* *
10054253 ATTTTGATATGATACTTGAC
1 ATTCTGATCTGATACTTGAC
10054273 CTGATTTATG
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
23 1 0.01
24 81 0.98
25 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:10059115 original size:94 final size:97
Alignment explanation
Indices: 10059028--10059209 Score: 229
Period size: 102 Copynumber: 1.8 Consensus size: 97
10059018 TTTTACAAAT
* *
10059028 GGAGTCAGACTATCACACCTACCATCCCACACTCTAGATGAAAAGGAGCATACCTTCCATCCCCA
1 GGAGTCAGACCATCACACCTACCATCCCACACTCTAGATGAAAAGGAGCATACCTTCCACCCCCA
10059093 AACTAGTCAGGTAGATTTTTTTTATTCTGCTACGAAG
66 AACTAGTCAGGTAGATTTTTTTTA---T-CTAC-AAG
** * * * * *
10059130 GGAGTCATCCCATCATACCTACCATCTCATACTCTAGGTGAAAGGGAGCATACCTTCCACCCCCA
1 GGAGTCAGACCATCACACCTACCATCCCACACTCTAGATGAAAAGGAGCATACCTTCCACCCCCA
*
10059195 AGCTAGTCAGGTAGA
66 AACTAGTCAGGTAGA
10059210 GTCATCCTGT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (97 bp):
GGAGTCAGACCATCACACCTACCATCCCACACTCTAGATGAAAAGGAGCATACCTTCCACCCCCA
AACTAGTCAGGTAGATTTTTTTTATCTACAAG
Found at i:10068616 original size:16 final size:15
Alignment explanation
Indices: 10068590--10068621 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
10068580 TTGATTTCTC
10068590 TCTTTTTTTTCTTTT
1 TCTTTTTTTTCTTTT
10068605 TCTTTTTCTTTCTTTT
1 TCTTTTT-TTTCTTTT
10068621 T
1 T
10068622 GATTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TCTTTTTTTTCTTTT
Found at i:10069531 original size:31 final size:31
Alignment explanation
Indices: 10069488--10069567 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
10069478 TATGTCATTC
* *
10069488 AACAAAGTTGAAGACGCATTGGGGAAGCTTG
1 AACAAAGCTGAAGACGCATTGGGGAAGCTTA
10069519 AACAAAGCTGAAGACGCATTGGGGAAGCTTA
1 AACAAAGCTGAAGACGCATTGGGGAAGCTTA
*
10069550 AACAAAGCTGACGACGCA
1 AACAAAGCTGAAGACGCA
10069568 CAGTCTTCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.39, C:0.17, G:0.29, T:0.15
Consensus pattern (31 bp):
AACAAAGCTGAAGACGCATTGGGGAAGCTTA
Found at i:10069977 original size:18 final size:18
Alignment explanation
Indices: 10069954--10070008 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 18
10069944 CATATAATTC
10069954 GATTTTGTACAATTATTT
1 GATTTTGTACAATTATTT
**
10069972 GATTTTGTGGAATTATGCTTT
1 GATTTTGTACAATTA---TTT
*
10069993 CATTTTGTACAATTAT
1 GATTTTGTACAATTAT
10070009 GCACATGATA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 14 0.48
21 15 0.52
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53
Consensus pattern (18 bp):
GATTTTGTACAATTATTT
Found at i:10074738 original size:16 final size:15
Alignment explanation
Indices: 10074716--10074759 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
10074706 AATTAAATTA
10074716 AAATAAAGAAAAAAT
1 AAATAAAGAAAAAAT
* *
10074731 AAATTAAATAAAAGAT
1 AAA-TAAAGAAAAAAT
10074747 AAGATAAAGAAAA
1 AA-ATAAAGAAAA
10074760 CAAAGATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.12
16 20 0.83
17 1 0.04
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (15 bp):
AAATAAAGAAAAAAT
Found at i:10074805 original size:23 final size:23
Alignment explanation
Indices: 10074750--10074816 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
10074740 AAAAGATAAG
10074750 ATAAAGAAAACAAAGATAAAATA
1 ATAAAGAAAACAAAGATAAAATA
* * *
10074773 GTAAATAAAACAAATATAAAA-A
1 ATAAAGAAAACAAAGATAAAATA
10074795 ATAAAGAAAA-AGAAGA-AAAATA
1 ATAAAGAAAACA-AAGATAAAATA
10074817 TATATAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
21 5 0.14
22 13 0.36
23 18 0.50
ACGTcount: A:0.75, C:0.03, G:0.09, T:0.13
Consensus pattern (23 bp):
ATAAAGAAAACAAAGATAAAATA
Found at i:10074854 original size:12 final size:13
Alignment explanation
Indices: 10074693--10074893 Score: 72
Period size: 13 Copynumber: 15.9 Consensus size: 13
10074683 AAAATGTAAG
*
10074693 AAATAAATAAATT
1 AAATAAATAAAAT
*
10074706 AATTAAATTAAAAT
1 AAATAAA-TAAAAT
*
10074720 AAA-GAA-AAAAT
1 AAATAAATAAAAT
10074731 AAATTAAATAAAAGAT
1 AAA-TAAAT-AAA-AT
*
10074747 AAGATAAAGAAAA-
1 AA-ATAAATAAAAT
* *
10074760 CAA-AGATAAAAT
1 AAATAAATAAAAT
* *
10074772 -AGTAAATAAAAC
1 AAATAAATAAAAT
10074784 AAAT--AT-AAA-
1 AAATAAATAAAAT
*
10074793 AAATAAAGAAAA-
1 AAATAAATAAAAT
* *
10074805 AGAAGAAA-AATAT
1 A-AATAAATAAAAT
*
10074818 ATATAAATAAAAT
1 AAATAAATAAAAT
10074831 AAATAAATAAAAT
1 AAATAAATAAAAT
10074844 -AAT-AATAAAA-
1 AAATAAATAAAAT
*
10074854 AAGTAAA-AATAAT
1 AAATAAATAA-AAT
* * *
10074867 ATATATATATATAT
1 AAATAAATA-AAAT
10074881 ATAATAAATAAAA
1 A-AATAAATAAAA
10074894 ATAGTATATA
Statistics
Matches: 137, Mismatches: 28, Indels: 45
0.65 0.13 0.21
Matches are distributed among these distances:
9 4 0.03
10 3 0.02
11 29 0.21
12 26 0.19
13 39 0.28
14 14 0.10
15 13 0.09
16 8 0.06
17 1 0.01
ACGTcount: A:0.71, C:0.01, G:0.05, T:0.23
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:10074870 original size:2 final size:2
Alignment explanation
Indices: 10074865--10074915 Score: 59
Period size: 2 Copynumber: 25.5 Consensus size: 2
10074855 AGTAAAAATA
* * *
10074865 AT AT AT AT AT AT AT AT AT A- AT AA AT AA AA AT AGT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
10074907 AT AT AT AT A
1 AT AT AT AT A
10074916 AAATAAAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
1 1 0.02
2 40 0.93
3 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (2 bp):
AT
Found at i:10074873 original size:51 final size:49
Alignment explanation
Indices: 10074726--10074894 Score: 143
Period size: 51 Copynumber: 3.4 Consensus size: 49
10074716 AAATAAAGAA
* * * *
10074726 AAAATAAATTAAATAAAAGAT-AAGATAAAGAAAACAAAGATAAAATAGTAAAT
1 AAAATAAA-TAAATAAAAAATAAAGAAAAAGAAGA-AAA-AT-ATATA-TAAAT
*
10074779 AAAACAAAT--ATAAAAAATAAAGAAAAAGAAGAAAAATATATATAAAT
1 AAAATAAATAAATAAAAAATAAAGAAAAAGAAGAAAAATATATATAAAT
*
10074826 AAAATAAATAAATAAAATAATAATA-AAAAAGTAA-AAATAATATATATATAT
1 AAAATAAATAAATAAAA-AATAA-AGAAAAAG-AAGAAA-AATATATATAAAT
*
10074877 -ATATATAATAAATAAAAA
1 AAAATA-AATAAATAAAAA
10074895 TAGTATATAT
Statistics
Matches: 100, Mismatches: 8, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
47 13 0.13
48 4 0.04
49 8 0.08
50 30 0.30
51 37 0.37
52 1 0.01
53 7 0.07
ACGTcount: A:0.72, C:0.01, G:0.05, T:0.22
Consensus pattern (49 bp):
AAAATAAATAAATAAAAAATAAAGAAAAAGAAGAAAAATATATATAAAT
Found at i:10074896 original size:32 final size:32
Alignment explanation
Indices: 10074814--10074923 Score: 119
Period size: 32 Copynumber: 3.7 Consensus size: 32
10074804 AAGAAGAAAA
* *
10074814 ATATATATA-AATAAA-ATAAATAA-ATA-AA
1 ATATATATATAATAAATAAAAATAATATATAT
*
10074842 ATA-ATA-ATAAAAAAGTAAAAATAATATATAT
1 ATATATATATAATAAA-TAAAAATAATATATAT
*
10074873 ATATATATATAATAAATAAAAATAGTATATAT
1 ATATATATATAATAAATAAAAATAATATATAT
10074905 ATATATATAT-A-AAATAAAA
1 ATATATATATAATAAATAAAA
10074924 CTGATAATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
26 1 0.01
27 8 0.11
28 3 0.04
29 7 0.10
30 11 0.16
31 5 0.07
32 28 0.40
33 7 0.10
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (32 bp):
ATATATATATAATAAATAAAAATAATATATAT
Found at i:10074999 original size:23 final size:23
Alignment explanation
Indices: 10074973--10075031 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
10074963 TAAAAAAATA
*
10074973 AAAATATATAATAA-GTAAAAAAG
1 AAAATACATAA-AATGTAAAAAAG
*
10074996 AAAATGCATAAAATGTAAAAAA-
1 AAAATACATAAAATGTAAAAAAG
*
10075018 AAATTACATGAAAA
1 AAAATACAT-AAAA
10075032 AAAGAAAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 9 0.30
23 21 0.70
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.20
Consensus pattern (23 bp):
AAAATACATAAAATGTAAAAAAG
Found at i:10076154 original size:34 final size:36
Alignment explanation
Indices: 10076116--10076198 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 36
10076106 GGGTTTGGTG
10076116 TTTCAAGAGAAAC-ATCTTCAAA-G-GTTTTTTTGTA
1 TTTCAAGAGAAACAAT-TTCAAATGTGTTTTTTTGTA
* *
10076150 TTTCAAGAGAAACAATTTCAAATGTTTTTTTTTTGTG
1 TTTCAAGAGAAACAATTTCAAATG-TGTTTTTTTGTA
10076187 TTTCAAGAGAAA
1 TTTCAAGAGAAA
10076199 TTGTATTCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
34 19 0.44
35 3 0.07
37 21 0.49
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (36 bp):
TTTCAAGAGAAACAATTTCAAATGTGTTTTTTTGTA
Found at i:10076191 original size:37 final size:34
Alignment explanation
Indices: 10076113--10076198 Score: 111
Period size: 34 Copynumber: 2.4 Consensus size: 34
10076103 TGAGGGTTTG
10076113 GTGTTTCAAGAGAAACATCTTCAAAGGTTTTTTT
1 GTGTTTCAAGAGAAACATCTTCAAAGGTTTTTTT
* *
10076147 GTATTTCAAGAGAAACAAT-TTCAAATGTTTTTTTTTT
1 GTGTTTCAAGAGAAAC-ATCTTCAAA-G--GTTTTTTT
10076184 GTGTTTCAAGAGAAA
1 GTGTTTCAAGAGAAA
10076199 TTGTATTCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
34 21 0.47
35 3 0.07
37 21 0.47
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (34 bp):
GTGTTTCAAGAGAAACATCTTCAAAGGTTTTTTT
Found at i:10076367 original size:15 final size:15
Alignment explanation
Indices: 10076333--10076380 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
10076323 CAAGGGAGAC
10076333 AAAATATGCTGCAAGAG
1 AAAATAT-CT-CAAGAG
* *
10076350 AAAATGTCTCAAGGG
1 AAAATATCTCAAGAG
*
10076365 AAACTATCTCAAGAG
1 AAAATATCTCAAGAG
10076380 A
1 A
10076381 GACAAAATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 18 0.69
16 2 0.08
17 6 0.23
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.19
Consensus pattern (15 bp):
AAAATATCTCAAGAG
Found at i:10076485 original size:102 final size:102
Alignment explanation
Indices: 10076371--10076557 Score: 252
Period size: 102 Copynumber: 1.8 Consensus size: 102
10076361 AGGGAAACTA
* * *
10076371 TCTCAAGAGAGACAAAATTCATTTCAAGGGAAATG-TTTTCAATG-TTTATGTTTCAAGAGAAAC
1 TCTCAAGAGAGACAAAATTCATTTCAA-GGAAAAGATATTCAAAGATTT-TGTTTCAAGAGAAAC
10076434 TATCTCAAGAGAGACAAAACTTAGCTCCAAAAGAAAATG
64 TATCTCAAGAGAGACAAAACTTAGCTCCAAAAGAAAATG
* * ** * *
10076473 TCTCAAGGGAGACGAAATTTGTTTCAAGGAAAAGATATTCAAAGATTTTGTTTCAAGGGAAACTG
1 TCTCAAGAGAGACAAAATTCATTTCAAGGAAAAGATATTCAAAGATTTTGTTTCAAGAGAAACTA
*
10076538 TCTCAAGAGAGATAAAACTT
66 TCTCAAGAGAGACAAAACTT
10076558 GGAAACTGTC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
101 6 0.08
102 64 0.88
103 3 0.04
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (102 bp):
TCTCAAGAGAGACAAAATTCATTTCAAGGAAAAGATATTCAAAGATTTTGTTTCAAGAGAAACTA
TCTCAAGAGAGACAAAACTTAGCTCCAAAAGAAAATG
Found at i:10076890 original size:106 final size:105
Alignment explanation
Indices: 10076705--10076966 Score: 407
Period size: 106 Copynumber: 2.5 Consensus size: 105
10076695 GTATTGTTCT
* * * *
10076705 GAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGCTCTGGAACTGGGAAATTATTTGTTGACAA
1 GAGTCCAATAT-CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAA
*
10076770 CCAGCCGTCCCTTCGATGTGAAGTTGAACTTGTGTTGTCTC
65 CCAGCCGTCCCTTCGATGTAAAGTTGAACTTGTGTTGTCTC
* * *
10076811 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGTTTTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATC-TTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAA
*
10076876 CCAGCCGTCCCTTCGCTGTAAAGTTGAACTTGTGTTGTCTC
65 CCAGCCGTCCCTTCGATGTAAAGTTGAACTTGTGTTGTCTC
*
10076917 GAGTCCAATATTCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAA
1 GAGTCCAATA-TCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA
10076967 GCCCCTTTGT
Statistics
Matches: 142, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
105 1 0.01
106 139 0.98
107 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (105 bp):
GAGTCCAATATCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAAC
CAGCCGTCCCTTCGATGTAAAGTTGAACTTGTGTTGTCTC
Found at i:10077736 original size:32 final size:32
Alignment explanation
Indices: 10077635--10077724 Score: 153
Period size: 32 Copynumber: 2.8 Consensus size: 32
10077625 ATTCCCAAAG
* *
10077635 ATGCCCCAATATTCGATGTTGAATCTAAAAAA
1 ATGCCCCAACATTTGATGTTGAATCTAAAAAA
*
10077667 ATGCCCCAACATTTGATGTTAAATCTAAAAAA
1 ATGCCCCAACATTTGATGTTGAATCTAAAAAA
10077699 ATGCCCCAACATTTGATGTTGAATCT
1 ATGCCCCAACATTTGATGTTGAATCT
10077725 TCAAAGCTGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (32 bp):
ATGCCCCAACATTTGATGTTGAATCTAAAAAA
Found at i:10078777 original size:69 final size:69
Alignment explanation
Indices: 10078662--10078799 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 69
10078652 TGTCTCTCTC
* * *
10078662 TTGATGCTCTATGATCTTCTAGTGGAGTGATTCAGTGATTCAGAAATGATTGTTCTTGATCAATC
1 TTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCAGAAATGATTGTGCTTGATCAATC
10078727 TCAT
66 TCAT
*
10078731 TTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCGGAAATGATTGTGCTTGATCAATC
1 TTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCAGAAATGATTGTGCTTGATCAATC
10078796 TCAT
66 TCAT
10078800 AGTTTGAATC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (69 bp):
TTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCAGAAATGATTGTGCTTGATCAATC
TCAT
Found at i:10078885 original size:11 final size:12
Alignment explanation
Indices: 10078871--10078920 Score: 66
Period size: 12 Copynumber: 4.0 Consensus size: 12
10078861 TTTTCTTCAA
10078871 TTTTC-CTTTTT
1 TTTTCTCTTTTT
10078882 TTTTCTCTTTTT
1 TTTTCTCTTTTT
10078894 ATTTTCTCTTTGTTT
1 -TTTTCTC-TT-TTT
10078909 TTTTCTCTTTTT
1 TTTTCTCTTTTT
10078921 GTTCTGATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
11 5 0.14
12 9 0.26
13 9 0.26
14 9 0.26
15 3 0.09
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTCTCTTTTT
Found at i:10078898 original size:13 final size:13
Alignment explanation
Indices: 10078870--10078920 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
10078860 TTTTTCTTCA
10078870 ATTTTC-CTTTTT
1 ATTTTCTCTTTTT
10078882 -TTTTCTCTTTTT
1 ATTTTCTCTTTTT
10078894 ATTTTCTCTTTGTT
1 ATTTTCTCTTT-TT
*
10078908 TTTTTCTCTTTTT
1 ATTTTCTCTTTTT
10078921 GTTCTGATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
11 5 0.14
12 6 0.17
13 12 0.34
14 12 0.34
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (13 bp):
ATTTTCTCTTTTT
Found at i:10080912 original size:17 final size:17
Alignment explanation
Indices: 10080890--10080940 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
10080880 AGTAAAAAGT
10080890 TAGTAAAAAAAGAAAAA
1 TAGTAAAAAAAGAAAAA
**
10080907 TAGTAATGAAAGAAAAA
1 TAGTAAAAAAAGAAAAA
*
10080924 -GGTAAAAAGAA-AAAAA
1 TAGTAAAAA-AAGAAAAA
10080940 T
1 T
10080941 GCAAACAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.14
Consensus pattern (17 bp):
TAGTAAAAAAAGAAAAA
Found at i:10081911 original size:38 final size:32
Alignment explanation
Indices: 10081869--10081961 Score: 78
Period size: 35 Copynumber: 2.6 Consensus size: 32
10081859 AAAAGATAGG
*
10081869 ATAAAGAAAACAAAGATAAAATAGAAAGTAAAATAAAT
1 ATAAA-AAAACAAA-A-AAAAAAGAAA--AAAA-AAAT
* *
10081907 ATAAAAAAAGAAAAAAAAAAGAAAAAAAATAT
1 ATAAAAAAACAAAAAAAAAAGAAAAAAAAAAT
10081939 ATAAATAAAACAAATAAATAAAA
1 ATAAA-AAAACAAA-AAA-AAAA
10081962 TAATAATAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
32 8 0.17
33 11 0.23
34 3 0.06
35 13 0.27
36 1 0.02
37 7 0.15
38 5 0.10
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.14
Consensus pattern (32 bp):
ATAAAAAAACAAAAAAAAAAGAAAAAAAAAAT
Found at i:10081914 original size:13 final size:12
Alignment explanation
Indices: 10081898--10082061 Score: 66
Period size: 13 Copynumber: 12.6 Consensus size: 12
10081888 AATAGAAAGT
10081898 AAAATAAATATAA
1 AAAATAAATA-AA
*
10081911 AAAA-AGAAAAAA
1 AAAATA-AATAAA
*
10081923 AAAAGAAA-AAA
1 AAAATAAATAAA
10081934 AATATATAAATAAA
1 AA-A-ATAAATAAA
10081948 ACAAATAAATAAA
1 A-AAATAAATAAA
*
10081961 ATAAT-AATAAA
1 AAAATAAATAAA
10081972 AAGTAA-AAATAATA
1 AA--AATAAATAA-A
*
10081986 TATATATATAATAAA
1 -A-AAATA-AATAAA
10082001 TAAAATAAATAAA
1 -AAAATAAATAAA
* *
10082014 AATAGTAAATATA
1 AA-AATAAATAAA
* *
10082027 TATATAAATTAATA
1 AAAATAAA-TAA-A
*
10082041 AAACTGATAATAAA
1 AAAAT-A-AATAAA
10082055 AAAATAA
1 AAAATAA
10082062 TATATATATA
Statistics
Matches: 116, Mismatches: 16, Indels: 39
0.68 0.09 0.23
Matches are distributed among these distances:
11 12 0.10
12 20 0.17
13 47 0.41
14 19 0.16
15 10 0.09
16 8 0.07
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:10081924 original size:10 final size:11
Alignment explanation
Indices: 10081909--10081935 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10081899 AAATAAATAT
10081909 AAAAAAAGAAA
1 AAAAAAAGAAA
10081920 AAAAAAAGAAA
1 AAAAAAAGAAA
10081931 AAAAA
1 AAAAA
10081936 TATATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:10081948 original size:24 final size:24
Alignment explanation
Indices: 10081921--10081989 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
10081911 AAAAAGAAAA
10081921 AAAAAAGAAAAAAAATATATAAAT
1 AAAAAAGAAAAAAAATATATAAAT
10081945 AAAACAA-ATAAATAAAATA-AT-AAT
1 AAAA-AAGA-AAA-AAAATATATAAAT
*
10081969 -AAAAAGTAAAAATAATATATA
1 AAAAAAG-AAAAAAAATATATA
10081990 TATATAATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 9 0.24
25 7 0.19
26 6 0.16
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.20
Consensus pattern (24 bp):
AAAAAAGAAAAAAAATATATAAAT
Found at i:10081962 original size:9 final size:9
Alignment explanation
Indices: 10081897--10082014 Score: 58
Period size: 9 Copynumber: 13.6 Consensus size: 9
10081887 AAATAGAAAG
10081897 TAAAATAAA
1 TAAAATAAA
10081906 TATAAA-AAA
1 TA-AAATAAA
10081915 -AGAAA-AAA
1 TA-AAATAAA
*
10081923 -AAAAGAAA
1 TAAAATAAA
* *
10081931 AAAAATATA
1 TAAAATAAA
10081940 T-AAATAAA
1 TAAAATAAA
10081948 -ACAAATAAA
1 TA-AAATAAA
10081957 TAAAAT-AA
1 TAAAATAAA
10081965 TAATAA-AAA
1 TAA-AATAAA
10081974 GTAAAA-ATAA
1 -TAAAATA-AA
* *
10081984 T-ATATATA
1 TAAAATAAA
*
10081992 TATAATAAA
1 TAAAATAAA
10082001 TAAAATAAA
1 TAAAATAAA
10082010 TAAAA
1 TAAAA
10082015 ATAGTAAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
7 3 0.03
8 26 0.30
9 48 0.56
10 9 0.10
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (9 bp):
TAAAATAAA
Found at i:10082002 original size:48 final size:45
Alignment explanation
Indices: 10081897--10082014 Score: 128
Period size: 48 Copynumber: 2.5 Consensus size: 45
10081887 AAATAGAAAG
* *
10081897 TAAAATAAATATAAAAAAAGAAAAAAAAAAGAAAAAAAATATATAAA
1 TAAAAT-AA-ATAAAAAAATAAAATAAAAAGAAAAAAAATATATAAA
* * *
10081944 TAAAACAAATAAATAAAATAATAATAAAAAGTAAAAATAATATATATA
1 TAAAATAAATAAA-AAAATAA-AATAAAAAG-AAAAAAAATATATAAA
*
10081992 TATAATAAATAAAATAAATAAAA
1 TAAAATAAATAAAA-AAATAAAA
10082015 ATAGTAAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
45 5 0.08
46 8 0.13
47 16 0.27
48 31 0.52
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (45 bp):
TAAAATAAATAAAAAAATAAAATAAAAAGAAAAAAAATATATAAA
Found at i:10082008 original size:41 final size:40
Alignment explanation
Indices: 10081955--10082073 Score: 122
Period size: 39 Copynumber: 3.0 Consensus size: 40
10081945 AAAACAAATA
*
10081955 AATAAA-ATAATAATAAAAAGTAAAAATAATATATATATAT
1 AATAAATAAAATAATAAAAA-TAAAAATAATATATATATAT
**
10081995 AATAAATAAAATAAATAAAAAT-AGTA-AATATATATATA-
1 AATAAATAAAAT-AATAAAAATAAAAATAATATATATATAT
* * *
10082033 AATTAATAAAACTGATAATAA-AAAAATAATATATATATAT
1 AATAAATAAAA-TAATAAAAATAAAAATAATATATATATAT
10082073 A
1 A
10082074 GTCTAAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
38 18 0.28
39 25 0.38
40 9 0.14
41 5 0.08
42 8 0.12
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (40 bp):
AATAAATAAAATAATAAAAATAAAAATAATATATATATAT
Found at i:10082021 original size:44 final size:42
Alignment explanation
Indices: 10081951--10082042 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 42
10081941 AAATAAAACA
*
10081951 AATAAATAAAATAATAATAAAAAGTAAAAATAATATATATATAT
1 AATAAATAAAATAATAATAAAAAGTAAAAAT-ATATATAAAT-T
* *
10081995 AATAAATAAAATAAATAA-AAATAGTAAATATATATATAAATT
1 AATAAATAAAAT-AATAATAAAAAGTAAAAATATATATAAATT
10082037 AATAAA
1 AATAAA
10082043 ACTGATAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
42 7 0.16
43 9 0.20
44 23 0.52
45 5 0.11
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (42 bp):
AATAAATAAAATAATAATAAAAAGTAAAAATATATATAAATT
Found at i:10082106 original size:26 final size:25
Alignment explanation
Indices: 10082051--10082109 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
10082041 AAACTGATAA
* *
10082051 TAAAAAAATAATATATATATATAGTC
1 TAAAAAAATAAAATATATATAAAG-C
10082077 TAAAAAAATAAAAATATATACTAAAG-
1 TAAAAAAAT-AAAATATATA-TAAAGC
10082103 TAAAAAA
1 TAAAAAA
10082110 GAAAATGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 16 0.55
27 9 0.31
28 4 0.14
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (25 bp):
TAAAAAAATAAAATATATATAAAGC
Found at i:10082108 original size:27 final size:26
Alignment explanation
Indices: 10082052--10082109 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
10082042 AACTGATAAT
* * *
10082052 AAAAAAATAATATATATATATAGTCT
1 AAAAAAATAAAATATATATAAAGTCA
10082078 AAAAAAATAAAAATATATACTAAAGT-A
1 AAAAAAAT-AAAATATATA-TAAAGTCA
10082105 AAAAA
1 AAAAA
10082110 GAAAATGCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.30
27 14 0.52
28 5 0.19
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (26 bp):
AAAAAAATAAAATATATATAAAGTCA
Found at i:10083867 original size:45 final size:44
Alignment explanation
Indices: 10083790--10083874 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 44
10083780 ATAATAATTA
*
10083790 ATTAATAATTTAATATTTTTTATTGTTCATTAGAAAATTAATAT
1 ATTAACAATTTAATATTTTTTATTGTTCATTAGAAAATTAATAT
*
10083834 ATTAACAATTT-ATCATCTTTTTATTGTAT-ATTAGTAAATTA
1 ATTAACAATTTAAT-AT-TTTTTATTGT-TCATTAGAAAATTA
10083875 GTAATTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
43 2 0.06
44 12 0.33
45 21 0.58
46 1 0.03
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (44 bp):
ATTAACAATTTAATATTTTTTATTGTTCATTAGAAAATTAATAT
Found at i:10084768 original size:20 final size:20
Alignment explanation
Indices: 10084743--10084809 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
10084733 TTTTCCCAAT
10084743 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
10084763 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
10084784 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
10084804 TCGCAA
1 TCGCAA
10084810 CACGAATTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:10084786 original size:21 final size:21
Alignment explanation
Indices: 10084760--10084835 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
10084750 GCGAATAAGT
10084760 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
* ** *
10084781 AAATCGCAATGCGAA-TAAGT
1 AAATCGCAACGCGAATTGGGA
*
10084801 AAATCGCAACACGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
*
10084822 AAATCGCAATGCGA
1 AAATCGCAACGCGA
10084836 TACTGACTAT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (21 bp):
AAATCGCAACGCGAATTGGGA
Found at i:10084849 original size:20 final size:20
Alignment explanation
Indices: 10084824--10084938 Score: 115
Period size: 20 Copynumber: 5.7 Consensus size: 20
10084814 AATTGGGAAA
*
10084824 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
10084844 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
10084865 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
10084885 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
10084905 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
10084925 TTCGCAACGCGATA
1 ATCGCAACGCGATA
10084939 ATACATAATC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:10084850 original size:41 final size:41
Alignment explanation
Indices: 10084743--10084835 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
10084733 TTTTCCCAAT
*
10084743 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGAAAA
10084784 TCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGAAAA
10084825 TCGCAATGCGA
1 TCGCAATGCGA
10084836 TACTGACTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACACGAATTGGGAAAA
Found at i:10084866 original size:41 final size:41
Alignment explanation
Indices: 10084821--10084958 Score: 154
Period size: 41 Copynumber: 3.4 Consensus size: 41
10084811 ACGAATTGGG
* * *
10084821 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* * *
10084862 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATACTGAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAAT-AC
** *
10084904 --TTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* *
10084943 ATAATCGCAATGCGAT
1 AAAATCGCAACGCGAT
10084959 TTTCAAAGCG
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 2 0.03
40 31 0.39
41 44 0.56
42 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
Found at i:10085154 original size:22 final size:22
Alignment explanation
Indices: 10085126--10085169 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10085116 CACTCTCTCA
10085126 CCCATCTCC-GACGAAATCCGTC
1 CCCATCTCCAG-CGAAATCCGTC
10085148 CCCATCTCCAGCGAAATCCGTC
1 CCCATCTCCAGCGAAATCCGTC
10085170 TATCTCCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.23, C:0.45, G:0.14, T:0.18
Consensus pattern (22 bp):
CCCATCTCCAGCGAAATCCGTC
Found at i:10085176 original size:20 final size:21
Alignment explanation
Indices: 10085126--10085177 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
10085116 CACTCTCTCA
10085126 CCCATCTCC-GACGAAATCCGT
1 CCCATCTCCAG-CGAAATCCGT
10085147 CCCCATCTCCAGCGAAATCCGT
1 -CCCATCTCCAGCGAAATCCGT
*
10085169 -CTATCTCCA
1 CCCATCTCCA
10085178 TCTCTCAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.29
22 19 0.68
23 1 0.04
ACGTcount: A:0.23, C:0.44, G:0.12, T:0.21
Consensus pattern (21 bp):
CCCATCTCCAGCGAAATCCGT
Found at i:10086831 original size:18 final size:18
Alignment explanation
Indices: 10086810--10086854 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
10086800 TCCACTTCGG
10086810 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
10086828 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
10086846 GAGCCATCA
1 GAGCCATCA
10086855 TCTGATCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.29, C:0.44, G:0.13, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:10087389 original size:19 final size:20
Alignment explanation
Indices: 10087335--10087401 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
10087325 TAGTTTACTT
* *
10087335 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
10087355 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
10087375 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
10087394 TCGCAACG
1 TCGCAACG
10087402 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:10087428 original size:19 final size:19
Alignment explanation
Indices: 10087335--10087437 Score: 72
Period size: 19 Copynumber: 5.6 Consensus size: 19
10087325 TAGTTTACTT
* **
10087335 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
10087355 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
10087375 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
10087394 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
10087408 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
10087427 TCGCAATGCGA
1 TCGCAACGCGA
10087438 TTTGTGTTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
14 10 0.15
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 27 0.40
20 24 0.35
21 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:10087468 original size:14 final size:14
Alignment explanation
Indices: 10087449--10087506 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
10087439 TTGTGTTTCG
*
10087449 CGTTGCGATTTTGT
1 CGTTGCGATTTTTT
10087463 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TTT
10087479 CGCGTTGCGATTTTTT
1 --CGTTGCGATTTTTT
10087495 CGTTGCGATTTT
1 CGTTGCGATTTT
10087507 CATTTCGCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
14 23 0.59
16 5 0.13
18 11 0.28
ACGTcount: A:0.09, C:0.17, G:0.24, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTTT
Found at i:10087483 original size:32 final size:33
Alignment explanation
Indices: 10087444--10087522 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
10087434 GCGATTTGTG
10087444 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
10087476 TTTCGCGTTGCGATTTTTTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
10087509 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
10087523 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.48
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:10087521 original size:19 final size:19
Alignment explanation
Indices: 10087463--10087580 Score: 95
Period size: 20 Copynumber: 6.4 Consensus size: 19
10087453 GCGATTTTGT
10087463 CGTTGCGA-TTTCATTTCG
1 CGTTGCGATTTTCATTTCG
10087481 CGTTGCGA-TTT--TTT--
1 CGTTGCGATTTTCATTTCG
10087495 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* ***
10087514 CATTGCGATAGCCATTTCCG
1 CGTTGCGATTTTCATTT-CG
** *
10087534 CGTTGCGATAGTCATTTTG
1 CGTTGCGATTTTCATTTCG
*
10087553 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
10087573 TGTTGCGA
1 CGTTGCGA
10087581 AAGTAAACTA
Statistics
Matches: 81, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.10
15 3 0.04
16 3 0.04
17 3 0.04
18 11 0.14
19 25 0.31
20 28 0.35
ACGTcount: A:0.14, C:0.19, G:0.24, T:0.43
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:10089447 original size:14 final size:14
Alignment explanation
Indices: 10089428--10089463 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
10089418 ATTGTTTAAT
10089428 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
10089442 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
10089456 TGATTTGT
1 TGATTTGT
10089464 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:10089589 original size:14 final size:14
Alignment explanation
Indices: 10089570--10089623 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
10089560 CGAAATGGCT
10089570 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
10089584 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
*
10089603 ATCGCAACGACAAA
1 ATCGCAACGAGAAA
10089617 ATCGCAA
1 ATCGCAA
10089624 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 17 0.50
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.32
ACGTcount: A:0.48, C:0.22, G:0.19, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:10089641 original size:33 final size:33
Alignment explanation
Indices: 10089551--10089628 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
10089541 AAAACAGACT
* *** *
10089551 ATCGCAACGCGAAATGGCTATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
10089584 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
10089617 ATCGCAATGCGA
1 ATCGCAATGCGA
10089629 TTTTCATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.42, C:0.23, G:0.22, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Done.