Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 53 of 62
Found at i:12527196 original size:107 final size:107
Alignment explanation
Indices: 12527053--12527266 Score: 401
Period size: 107 Copynumber: 2.0 Consensus size: 107
12527043 TATTTATGAC
* *
12527053 GCGCATTTATGACGCGCATTTATGACGCGCATTTATGACACTCATTGCGCGTCATTGAAGCCCCC
1 GCGCATTTATGACACGCATTTATAACGCGCATTTATGACACTCATTGCGCGTCATTGAAGCCCCC
12527118 GTCATAAACGAAGACGACACACATTTGTGTGTCATAAATTTA
66 GTCATAAACGAAGACGACACACATTTGTGTGTCATAAATTTA
*
12527160 GCGCATTTATGACACGCATTTATAACGCGCATTTATGACACTCATTGCTCGTCATTGAAGCCCCC
1 GCGCATTTATGACACGCATTTATAACGCGCATTTATGACACTCATTGCGCGTCATTGAAGCCCCC
12527225 GTCATAAACGAAGACGACACACATTTGTGTGTCATAAATTTA
66 GTCATAAACGAAGACGACACACATTTGTGTGTCATAAATTTA
12527267 TGACACGCAT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (107 bp):
GCGCATTTATGACACGCATTTATAACGCGCATTTATGACACTCATTGCGCGTCATTGAAGCCCCC
GTCATAAACGAAGACGACACACATTTGTGTGTCATAAATTTA
Found at i:12527329 original size:85 final size:84
Alignment explanation
Indices: 12527177--12527342 Score: 203
Period size: 85 Copynumber: 2.0 Consensus size: 84
12527167 TATGACACGC
* * *
12527177 ATTTATAACGCGCATTTATGACACTCATTGCTCGTCATTGAAGCCCCCGTCATAAACGAAGACGA
1 ATTTATAACACGCATTTATGACACTCATTGCTCGTCATTGAAGCACACGTCATAAAC-AAGACGA
*
12527242 CACACATTTGTGTGTCATAA
65 CACACATTCGTGTGTCATAA
* *
12527262 ATTTATGACACGCATTTATGAC-TTACATTGCGT-GTCATTGAAGCACACGTCATTAGAA-AAGA
1 ATTTATAACACGCATTTATGACACT-CATTGC-TCGTCATTGAAGCACACGTCA-TA-AACAAGA
*
12527324 TGACACACATTCGTGTGTC
62 CGACACACATTCGTGTGTC
12527343 GTGATTGTAT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
84 1 0.01
85 64 0.91
86 3 0.04
87 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (84 bp):
ATTTATAACACGCATTTATGACACTCATTGCTCGTCATTGAAGCACACGTCATAAACAAGACGAC
ACACATTCGTGTGTCATAA
Found at i:12530048 original size:24 final size:23
Alignment explanation
Indices: 12530008--12530053 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
12529998 CTAAGAAATA
* *
12530008 TATTTACCAAAATAAAAAAATTG
1 TATTTACAAAAAAAAAAAAATTG
12530031 TATTTAGCAAAAAAAAAAAAATT
1 TATTTA-CAAAAAAAAAAAAATT
12530054 AAACCTGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (23 bp):
TATTTACAAAAAAAAAAAAATTG
Found at i:12531709 original size:22 final size:21
Alignment explanation
Indices: 12531684--12531727 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
12531674 ATTATCAAAG
*
12531684 GGGAACCGATTCCCCTGCTACA
1 GGGAACCGA-TACCCTGCTACA
*
12531706 GGGAATCGATACCCTGCTACA
1 GGGAACCGATACCCTGCTACA
12531727 G
1 G
12531728 TACTGCTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (21 bp):
GGGAACCGATACCCTGCTACA
Found at i:12533620 original size:22 final size:23
Alignment explanation
Indices: 12533590--12533632 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
12533580 TTTTTCATTT
12533590 AGGGAGGAATC-GATACCCCCTCA
1 AGGGAGGAATCTG-TACCCCCTCA
12533613 AGGG-GGAATCTGTACCCCCT
1 AGGGAGGAATCTGTACCCCCT
12533633 GCACAATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.16
Consensus pattern (23 bp):
AGGGAGGAATCTGTACCCCCTCA
Found at i:12534498 original size:21 final size:21
Alignment explanation
Indices: 12534474--12534522 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
12534464 AAGTGTATCG
12534474 ATGCACATTCAATGTGTACCA
1 ATGCACATTCAATGTGTACCA
*
12534495 ATGCACATTCAATGTGTACCG
1 ATGCACATTCAATGTGTACCA
12534516 ATGCACA
1 ATGCACA
12534523 AGTAGTGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (21 bp):
ATGCACATTCAATGTGTACCA
Found at i:12535373 original size:13 final size:12
Alignment explanation
Indices: 12535354--12535384 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
12535344 GTTATGATAT
12535354 ATATATATATAG
1 ATATATATATAG
12535366 ATTATATATATAG
1 A-TATATATATAG
12535379 ATATAT
1 ATATAT
12535385 GAAAGTGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (12 bp):
ATATATATATAG
Found at i:12535466 original size:44 final size:44
Alignment explanation
Indices: 12535416--12535505 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
12535406 TAAGTGATAT
12535416 GTTTATAGGTTATAATATGTTACAGAATTTATGTGAATATAAAA
1 GTTTATAGGTTATAATATGTTACAGAATTTATGTGAATATAAAA
12535460 GTTTATAGGTTATAATATGTTACAGAATTTATGTGAATATAAAA
1 GTTTATAGGTTATAATATGTTACAGAATTTATGTGAATATAAAA
12535504 GT
1 GT
12535506 GTAAACCATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.41
Consensus pattern (44 bp):
GTTTATAGGTTATAATATGTTACAGAATTTATGTGAATATAAAA
Found at i:12537479 original size:23 final size:24
Alignment explanation
Indices: 12537452--12537501 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
12537442 CCACTAGGGG
12537452 CTATGA-AATTTGTCCCGAAGGAC
1 CTATGACAATTTGTCCCGAAGGAC
*
12537475 CTATGACTGTATTTGTCCCGAAGGAC
1 CTATGAC--AATTTGTCCCGAAGGAC
12537501 C
1 C
12537502 ACTCCTTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
26 17 0.74
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
CTATGACAATTTGTCCCGAAGGAC
Found at i:12538386 original size:13 final size:13
Alignment explanation
Indices: 12538354--12538402 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 13
12538344 TGAAAATTGA
*
12538354 TAATAATCAATAATT
1 TAATAATAAAT-A-T
12538369 TAATAATAAATAT
1 TAATAATAAATAT
12538382 TAATAATAAATAT
1 TAATAATAAATAT
12538395 TAAATAAT
1 T-AATAAT
12538403 TGATTATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 15 0.47
14 7 0.22
15 10 0.31
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATAATAAATAT
Found at i:12541155 original size:13 final size:13
Alignment explanation
Indices: 12541123--12541171 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 13
12541113 TGAAAATTGA
*
12541123 TAATAATCAATAATT
1 TAATAATAAAT-A-T
12541138 TAATAATAAATAT
1 TAATAATAAATAT
12541151 TAATAATAAATAT
1 TAATAATAAATAT
12541164 TAAATAAT
1 T-AATAAT
12541172 TGATTATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 15 0.47
14 7 0.22
15 10 0.31
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATAATAAATAT
Found at i:12547132 original size:22 final size:22
Alignment explanation
Indices: 12547115--12547181 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
12547105 CTCGTATAAA
12547115 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
12547137 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
12547159 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
12547181 T
1 T
12547182 ATGTCCATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:12547440 original size:30 final size:31
Alignment explanation
Indices: 12547399--12547458 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
12547389 TAGACATAGT
*
12547399 ATTTCCATACCTTTAACACATAG-GCATATC
1 ATTTACATACCTTTAACACATAGTGCATATC
*
12547429 ATTTACATACCTTTATCACATAGTGCATAT
1 ATTTACATACCTTTAACACATAGTGCATAT
12547459 AACTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATATC
Found at i:12547515 original size:29 final size:29
Alignment explanation
Indices: 12547473--12547544 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
12547463 TTTTCTGCAT
**
12547473 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATACAA
*
12547502 ATTCATGTCATGTAATACATTTAATACAA
1 ATTCATGTCATGTAATACATATAATACAA
12547531 ATTCATGTCATGTA
1 ATTCATGTCATGTA
12547545 TCATAATATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATACAA
Found at i:12547951 original size:66 final size:65
Alignment explanation
Indices: 12547844--12547995 Score: 189
Period size: 66 Copynumber: 2.3 Consensus size: 65
12547834 TCTTTTTCTC
* *
12547844 ATGGGGGAATCGGTTCCCCCCCTTAGGGGTATCGATTCCCTCAAGCAATCTGGAATTTCATATAC
1 ATGGGGGTATCGGTTCCCCCCCTTAGGGGTATCGATTCCCTCAAGCAATCTGGAAATTCAT-TAC
12547909 G
65 G
* ** * *
12547910 ATGGGGGTATCGGTTCCCCCCC-TGGGGGTATCGATTCCCCTCTTGCATTCTGGAAATTCATTTC
1 ATGGGGGTATCGGTTCCCCCCCTTAGGGGTATCGATT-CCCTCAAGCAATCTGGAAATTCATTAC
12547974 G
65 G
*
12547975 TTGAAGGGGTATCGGTTCCCC
1 ATG--GGGGTATCGGTTCCCC
12547996 TTGAATGGGT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
65 18 0.24
66 41 0.55
67 16 0.21
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (65 bp):
ATGGGGGTATCGGTTCCCCCCCTTAGGGGTATCGATTCCCTCAAGCAATCTGGAAATTCATTACG
Found at i:12548005 original size:21 final size:21
Alignment explanation
Indices: 12547975--12548017 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
12547965 ATTCATTTCG
* *
12547975 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
12547996 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
12548017 T
1 T
12548018 AACCCAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:12553695 original size:161 final size:161
Alignment explanation
Indices: 12553430--12553752 Score: 646
Period size: 161 Copynumber: 2.0 Consensus size: 161
12553420 ACAAAATATT
12553430 CAGAGCATACACAACTTAACCCTTTAATTACATGCCAACTGCTATTTACATAACAAAATGACCTA
1 CAGAGCATACACAACTTAACCCTTTAATTACATGCCAACTGCTATTTACATAACAAAATGACCTA
12553495 CTGATTAAGTTGCTTCTGATCTGGTGGTTGCAGGAGTAATACTGTCAAGCTGCTTCACCTGTCTT
66 CTGATTAAGTTGCTTCTGATCTGGTGGTTGCAGGAGTAATACTGTCAAGCTGCTTCACCTGTCTT
12553560 GTCTAATTCCCCGGATCCTACGTGTGAAACA
131 GTCTAATTCCCCGGATCCTACGTGTGAAACA
12553591 CAGAGCATACACAACTTAACCCTTTAATTACATGCCAACTGCTATTTACATAACAAAATGACCTA
1 CAGAGCATACACAACTTAACCCTTTAATTACATGCCAACTGCTATTTACATAACAAAATGACCTA
12553656 CTGATTAAGTTGCTTCTGATCTGGTGGTTGCAGGAGTAATACTGTCAAGCTGCTTCACCTGTCTT
66 CTGATTAAGTTGCTTCTGATCTGGTGGTTGCAGGAGTAATACTGTCAAGCTGCTTCACCTGTCTT
12553721 GTCTAATTCCCCGGATCCTACGTGTGAAACA
131 GTCTAATTCCCCGGATCCTACGTGTGAAACA
12553752 C
1 C
12553753 TCACACGCTA
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 162 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (161 bp):
CAGAGCATACACAACTTAACCCTTTAATTACATGCCAACTGCTATTTACATAACAAAATGACCTA
CTGATTAAGTTGCTTCTGATCTGGTGGTTGCAGGAGTAATACTGTCAAGCTGCTTCACCTGTCTT
GTCTAATTCCCCGGATCCTACGTGTGAAACA
Found at i:12554037 original size:22 final size:22
Alignment explanation
Indices: 12554020--12554086 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
12554010 CTCGTATAAA
12554020 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
12554042 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
12554064 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
12554086 T
1 T
12554087 ATGTCCATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:12554347 original size:30 final size:31
Alignment explanation
Indices: 12554306--12554365 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
12554296 TAGACATAGT
*
12554306 ATTTCCATACCTTTAACACATAG-GCATATC
1 ATTTACATACCTTTAACACATAGTGCATATC
*
12554336 ATTTACATACCTTTATCACATAGTGCATAT
1 ATTTACATACCTTTAACACATAGTGCATAT
12554366 AACTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATATC
Found at i:12554422 original size:29 final size:29
Alignment explanation
Indices: 12554380--12554451 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
12554370 TTTTCTGCAT
**
12554380 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATACAA
*
12554409 ATTCATGTCATGTAATACATTTAATACAA
1 ATTCATGTCATGTAATACATATAATACAA
12554438 ATTCATGTCATGTA
1 ATTCATGTCATGTA
12554452 TCATAATATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATACAA
Found at i:12554873 original size:69 final size:68
Alignment explanation
Indices: 12554753--12554906 Score: 209
Period size: 69 Copynumber: 2.2 Consensus size: 68
12554743 TTTTTCTCAT
* * *
12554753 GGGGGAATCGGTTCCCCCCCTTAGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACG
1 GGGGGTATCGGTTCCCCCCCCTAGGGGTATCGATTCCCCTCAAGCAATCTGGAAATTCAT-TACG
12554818 ATGA
65 ATGA
* ** * * *
12554822 GGGGGTATCGGTTCCCCCCCCTGGGGGTATCGATTCCCCTCTTGCATTCTGGAAATTCATTTCGT
1 GGGGGTATCGGTTCCCCCCCCTAGGGGTATCGATTCCCCTCAAGCAATCTGGAAATTCATTACGA
12554887 TGA
66 TGA
*
12554890 AGGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
12554907 TTGAATGGGT
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
68 22 0.29
69 53 0.71
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.29
Consensus pattern (68 bp):
GGGGGTATCGGTTCCCCCCCCTAGGGGTATCGATTCCCCTCAAGCAATCTGGAAATTCATTACGA
TGA
Found at i:12554916 original size:21 final size:21
Alignment explanation
Indices: 12554886--12554928 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
12554876 ATTCATTTCG
* *
12554886 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
12554907 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
12554928 T
1 T
12554929 AACCCAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:12556453 original size:149 final size:149
Alignment explanation
Indices: 12556199--12556495 Score: 576
Period size: 149 Copynumber: 2.0 Consensus size: 149
12556189 TGCCGCATAG
12556199 AATTGCACCGTAGTGCCATATAAAAATGTCCATAAGGACCACATATTATTCCTTAAGAATCATAT
1 AATTGCACCGTAGTGCCATATAAAAATGTCCATAAGGACCACATATTATTCCTTAAGAATCATAT
12556264 ACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATACATAT
66 ACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATACATAT
12556329 ATCCCGAAGGACCGCGTAA
131 ATCCCGAAGGACCGCGTAA
**
12556348 AATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATATTATTCCTTAAGAATCATAT
1 AATTGCACCGTAGTGCCATATAAAAATGTCCATAAGGACCACATATTATTCCTTAAGAATCATAT
12556413 ACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATACATAT
66 ACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATACATAT
12556478 ATCCCGAAGGACCGCGTA
131 ATCCCGAAGGACCGCGTA
12556496 GACCCTCGAC
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 146 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (149 bp):
AATTGCACCGTAGTGCCATATAAAAATGTCCATAAGGACCACATATTATTCCTTAAGAATCATAT
ACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATACATAT
ATCCCGAAGGACCGCGTAA
Found at i:12556616 original size:14 final size:14
Alignment explanation
Indices: 12556597--12556624 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
12556587 AACTTGTAAT
12556597 TCACGTATCACATA
1 TCACGTATCACATA
12556611 TCACGTATCACATA
1 TCACGTATCACATA
12556625 GCTTCTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.29
Consensus pattern (14 bp):
TCACGTATCACATA
Found at i:12557032 original size:2 final size:2
Alignment explanation
Indices: 12557025--12557058 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
12557015 TCCCTTAGAC
12557025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12557059 CACATGTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12558040 original size:21 final size:21
Alignment explanation
Indices: 12558016--12558060 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
12558006 TGTTGTTCGT
*
12558016 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTATCGATTCCCC
*
12558037 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
12558058 TTG
1 TTG
12558061 CCCAGAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.22, G:0.29, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:12575202 original size:3 final size:3
Alignment explanation
Indices: 12575194--12575228 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
12575184 AAACAAAAAT
*
12575194 ATA ATA ATA ATA AGA ATA ATA ATA ATA ATGA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA A
12575229 ATTTTATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:12579347 original size:13 final size:13
Alignment explanation
Indices: 12579329--12579353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12579319 ATCAATGATA
12579329 AATAATATTTACG
1 AATAATATTTACG
12579342 AATAATATTTAC
1 AATAATATTTAC
12579354 AATTCGTTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTTACG
Found at i:12580330 original size:42 final size:42
Alignment explanation
Indices: 12580279--12580369 Score: 137
Period size: 42 Copynumber: 2.2 Consensus size: 42
12580269 CATATTCGCA
* *
12580279 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTAG
1 TTGCGATAGTCCAAGTTCGCGTTCCGATTTATTCCAAATTAG
* * *
12580321 TTGCGATAGTCGAAGTTCGCGTTCCGATTTATTCTAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTCCGATTTATTCCAAATTAG
12580363 TTGCGAT
1 TTGCGAT
12580370 TTATTCCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (42 bp):
TTGCGATAGTCCAAGTTCGCGTTCCGATTTATTCCAAATTAG
Found at i:12580369 original size:63 final size:63
Alignment explanation
Indices: 12580298--12580432 Score: 207
Period size: 63 Copynumber: 2.1 Consensus size: 63
12580288 TCCAAGTTCG
* * * *
12580298 CGTTGCGATTTATTCCAAGTTAGTTGCGATAGTCGAAGTTCGCGTTCCGATTTATTCTAAATT
1 CGTTGCGATTTATTCCAAATTAGTTACGATAGTCCAAGTTCGCGTTCCGATTTATTCCAAATT
* * *
12580361 CGTTGCGATTTATTCCAAATTCGTTACGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTT
1 CGTTGCGATTTATTCCAAATTAGTTACGATAGTCCAAGTTCGCGTTCCGATTTATTCCAAATT
12580424 CGTTGCGAT
1 CGTTGCGAT
12580433 AGTCGAAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (63 bp):
CGTTGCGATTTATTCCAAATTAGTTACGATAGTCCAAGTTCGCGTTCCGATTTATTCCAAATT
Found at i:12580401 original size:105 final size:105
Alignment explanation
Indices: 12580282--12580474 Score: 350
Period size: 105 Copynumber: 1.8 Consensus size: 105
12580272 ATTCGCATTG
12580282 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTAGTTGCGATAGTCGAAGTTCGCGTTCCG
1 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTAGTTGCGATAGTCGAAGTTCGCGTTCCG
* *
12580347 ATTTATTCTAAATTCGTTGCGATTTATTCCAAATTCGTTA
66 ATTTATTCCAAACTCGTTGCGATTTATTCCAAATTCGTTA
* *
12580387 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCG
1 CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTAGTTGCGATAGTCGAAGTTCGCGTTCCG
12580452 ATTTATTCCAAACTCGTTGCGAT
66 ATTTATTCCAAACTCGTTGCGAT
12580475 AGTTCAAGTT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 84 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (105 bp):
CGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTAGTTGCGATAGTCGAAGTTCGCGTTCCG
ATTTATTCCAAACTCGTTGCGATTTATTCCAAATTCGTTA
Found at i:12580407 original size:42 final size:42
Alignment explanation
Indices: 12580361--12580521 Score: 263
Period size: 42 Copynumber: 3.9 Consensus size: 42
12580351 ATTCTAAATT
*
12580361 CGTTGCGATTTATTCCAAATTCGTTACGATAGTCCAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
* *
12580403 CGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
* *
12580445 CGTTGCGATTTATTCCAAACTCGTTGCGATAGTTCAAGTT--
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
12580485 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAA
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAA
12580522 AATCGCAACG
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 35 0.32
42 75 0.68
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (42 bp):
CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
Found at i:12580657 original size:5 final size:6
Alignment explanation
Indices: 12580607--12580654 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
12580597 GACACATATT
12580607 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC-CG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
12580652 ACC
1 ACC
12580655 CGAGACGAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 15 0.36
6 27 0.64
ACGTcount: A:0.29, C:0.54, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:12583567 original size:18 final size:19
Alignment explanation
Indices: 12583546--12583597 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
12583536 TTTTAGGTGT
*
12583546 AGAAAACAGACTTTA-TAA
1 AGAAAACAGACTGTATTAA
* **
12583564 AGAAAACATACTGTATTGT
1 AGAAAACAGACTGTATTAA
12583583 AGAAAACAGACTGTA
1 AGAAAACAGACTGTA
12583598 GGAAACAGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 13 0.46
19 15 0.54
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (19 bp):
AGAAAACAGACTGTATTAA
Found at i:12588274 original size:314 final size:317
Alignment explanation
Indices: 12587705--12588336 Score: 1243
Period size: 314 Copynumber: 2.0 Consensus size: 317
12587695 CAGAAATCTA
12587705 TCGACCTACCATTCCCCAATTGTATCTTTGAATTATCTCTCAAACAACATCCAACCTGGTCATTT
1 TCGACCTACCATTCCCCAATTGTATCTTTGAATTATCTCTCAAACAACATCCAACCTGGTCATTT
12587770 TTCAGATAGTTGTTCAAAATACCTCTCCATATCCATGAATCTAATGGGGAAACAACCTTTGTAAT
66 TTCAGATAGTTGTTCAAAATACCTCTCCATATCCATGAATCTAATGGGGAAACAACCTTTGTAAT
12587835 TAGAATAGACAAGTTGTCAATGTTATTTTTACAGCAGATCATCATTTTCCACTGGCTGTTTTTTT
131 TAGAATAGACAAGTTGTCAATGTTATTTTTACAGCAGATCATCATTTTCCACTGGCTGTTTTTTT
12587900 CATTTGCGAATTTCCACACCCATTTCCCAAGCAGAACTCTATTCATCAATCTCAGGTCAAC-ATT
196 CATTTGCGAATTTCCACACCCATTTCCCAAGCAGAACTCTATTCATCAATCTCAGGTCAACAATT
12587964 CCCAG-CCACCTTCATATGGTTGAC-AACAGATTTCCAATTCACCCAGTGGATTCGT
261 CCCAGCCCACCTTCATATGGTTGACAAACAGATTTCCAATTCACCCAGTGGATTCGT
12588019 TCGACCTACCATTCCCCAATTGTATCTTTGAATTATCTCTCAAACAACATCCAACCTGGTCATTT
1 TCGACCTACCATTCCCCAATTGTATCTTTGAATTATCTCTCAAACAACATCCAACCTGGTCATTT
12588084 TTCAGATAGTTGTTCAAAATACCTCTCCATATCCATGAATCTAATGGGGAAACAACCTTTGTAAT
66 TTCAGATAGTTGTTCAAAATACCTCTCCATATCCATGAATCTAATGGGGAAACAACCTTTGTAAT
12588149 TAGAATAGACAAGTTGTCAATGTTATTTTTACAGCAGATCATCATTTTCCACTGGCTGTTTTTTT
131 TAGAATAGACAAGTTGTCAATGTTATTTTTACAGCAGATCATCATTTTCCACTGGCTGTTTTTTT
12588214 CATTTGCGAATTTCCACACCCATTTCCCAAGCAGAACTCTATTCATCAATCTCAGGTCAACAATT
196 CATTTGCGAATTTCCACACCCATTTCCCAAGCAGAACTCTATTCATCAATCTCAGGTCAACAATT
12588279 CCCAGCCCACCTTCATATGGTTGACAAACAGATTTCCAATTCACCCAGTGGATTCGT
261 CCCAGCCCACCTTCATATGGTTGACAAACAGATTTCCAATTCACCCAGTGGATTCGT
12588336 T
1 T
12588337 TCTTAGCTTG
Statistics
Matches: 315, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
314 256 0.81
315 8 0.03
316 19 0.06
317 32 0.10
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (317 bp):
TCGACCTACCATTCCCCAATTGTATCTTTGAATTATCTCTCAAACAACATCCAACCTGGTCATTT
TTCAGATAGTTGTTCAAAATACCTCTCCATATCCATGAATCTAATGGGGAAACAACCTTTGTAAT
TAGAATAGACAAGTTGTCAATGTTATTTTTACAGCAGATCATCATTTTCCACTGGCTGTTTTTTT
CATTTGCGAATTTCCACACCCATTTCCCAAGCAGAACTCTATTCATCAATCTCAGGTCAACAATT
CCCAGCCCACCTTCATATGGTTGACAAACAGATTTCCAATTCACCCAGTGGATTCGT
Found at i:12614512 original size:59 final size:59
Alignment explanation
Indices: 12614404--12614542 Score: 153
Period size: 59 Copynumber: 2.3 Consensus size: 59
12614394 AATATAACAT
* *
12614404 TTTTAATATTATATAA-AATAAACAATTATATTATAATAATATAAGATATTATATT-TTTA
1 TTTTAATAATATATAATAA-AAACAATTATATTATAATAATATAAGATATTAT-TTATATA
*
12614463 TTTTAATAATATATAATAAAAA-AATTATATATTTAATAATGA-ATA-ATATTATTTATATA
1 TTTTAATAATATATAATAAAAACAATTATAT-TATAATAAT-ATA-AGATATTATTTATATA
*
12614522 TTTTAATAATATTTTAATAAA
1 TTTTAATAATA-TATAATAAA
12614543 GATATTTAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
58 10 0.14
59 48 0.69
60 12 0.17
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (59 bp):
TTTTAATAATATATAATAAAAACAATTATATTATAATAATATAAGATATTATTTATATA
Found at i:12614549 original size:14 final size:11
Alignment explanation
Indices: 12614504--12614541 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
12614494 TTTAATAATG
12614504 AATAATATTATT
1 AATAATATT-TT
*
12614516 TAT-ATATTTT
1 AATAATATTTT
12614526 AATAATATTTT
1 AATAATATTTT
12614537 AATAA
1 AATAA
12614542 AGATATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 4 0.17
11 17 0.74
12 2 0.09
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AATAATATTTT
Found at i:12614562 original size:23 final size:23
Alignment explanation
Indices: 12614536--12614580 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
12614526 AATAATATTT
12614536 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
12614559 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
12614581 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:12614931 original size:20 final size:20
Alignment explanation
Indices: 12614894--12614932 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12614884 TTACGGAATG
**
12614894 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATCAAATTCA
*
12614914 TTTTCCAGAATTCAAATTC
1 TTTTCCAGAAATCAAATTC
12614933 CAGTAATTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (20 bp):
TTTTCCAGAAATCAAATTCA
Found at i:12614942 original size:15 final size:15
Alignment explanation
Indices: 12614906--12614957 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
12614896 TTCCAGAAAT
**
12614906 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
12614921 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
*
12614935 GTAATTCAAATTCTA
1 GTAATTCAAATTCCA
12614950 GTAATTCA
1 GTAATTCA
12614958 TTTTCCGGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 12 0.36
15 21 0.64
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:12615202 original size:64 final size:64
Alignment explanation
Indices: 12615117--12615244 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
12615107 ATTATCGATT
12615117 GTGGTAAGAAATCTAGCTGCGTCCATAATTATTAGTGTTCAATAAGAAAATAAGTTGAGATTGG
1 GTGGTAAGAAATCTAGCTGCGTCCATAATTATTAGTGTTCAATAAGAAAATAAGTTGAGATTGG
* *
12615181 GTGGTAAGAAATCTGGTTGCGTCCATAATTATTAGTGTTCAATAAGAAAATAAGTTGAGATTGG
1 GTGGTAAGAAATCTAGCTGCGTCCATAATTATTAGTGTTCAATAAGAAAATAAGTTGAGATTGG
12615245 AATTTTTATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (64 bp):
GTGGTAAGAAATCTAGCTGCGTCCATAATTATTAGTGTTCAATAAGAAAATAAGTTGAGATTGG
Found at i:12615786 original size:187 final size:185
Alignment explanation
Indices: 12615181--12615799 Score: 680
Period size: 187 Copynumber: 3.3 Consensus size: 185
12615171 TTGAGATTGG
* * *
12615181 GTGGTAAGAAATCTGGTTGCGTCCAT-AATTATTAG-TGTTCAATAAGAAAATAAGTTGAGATTG
1 GTGGTAAGAAATCTGGTTGCGCCCATGAA-TATTAGAT-TTCGATAAGAAAATAAGTTGAGATCG
* * * * * *
12615244 GAATTTTTATAAGTTGTTTTAACAAATCCAGTTTCGACCT-AAAATGTTATC-GAAGTTTAGCAA
64 G-GTTTTTATAAGTTGATTTAACAAATTCAGTTTCGA-CTGAAAATATTACCGGAA-TTTAGTAA
** * ** *
12615307 AAAAGTTCATCAAAAGAA-G-TACGATAACAAAATAAGTTGAAAGGAGAAAATGTTATCAACC
126 ATGAGTTCATCAAAATAAGGATA-G-TAAC-AAATAAGTTGAAAGCTGAAAATGTTATCAATC
* * * *
12615368 GCGGTAAGAAATCTGGTTGCTCCCATGATTGTTAGCATTT-GATAAGAAAATAAGTTGAGATCGG
1 GTGGTAAGAAATCTGGTTGCGCCCATGAATATTAG-ATTTCGATAAGAAAATAAGTTGAGATCGG
* * * * *
12615432 GTTTGTTATAAGTTGATTTAACAAATTCGGTTTCAACCGAAAATATTACTGGAGTTTAGTAAATG
65 GTTT-TTATAAGTTGATTTAACAAATTCAGTTTCGACTGAAAATATTACCGGAATTTAGTAAATG
* * *
12615497 AGTTCATCAAAATAAGGAGAGTAACAAGATAAGTTGGAAGCTGAAAATGTTATCAATT
129 AGTTCATCAAAATAAGGATAGTAACAA-ATAAGTTGAAAGCTGAAAATGTTATCAATC
* * * * * * *
12615555 GTGATAAGAAATCCGATTGCGCCCATGATTGTTAGCTTTCGATAAGAAAGTAAGTTGAGATCGGG
1 GTGGTAAGAAATCTGGTTGCGCCCATGAATATTAGATTTCGATAAGAAAATAAGTTGAGATCGGG
* *
12615620 TTCTTTATAAGTTGCTTTAACAAATTCAATTTCGACTGAAAATATTACCGGAATTTAGTAAATGA
66 TT-TTTATAAGTTGATTTAACAAATTCAGTTTCGACTGAAAATATTACCGGAATTTAGTAAATGA
12615685 GTTCATCAAAATAAGGATAGTAACGAAATAAGTTGAAAGCTGAAAATGTTATCAATC
130 GTTCATCAAAATAAGGATAGTAAC-AAATAAGTTGAAAGCTGAAAATGTTATCAATC
* * * *
12615742 ATGGTAA-AAATTTTGGTTGCGCCCATGAATATTA-ATGGTCGATAAGAAACTAAGTTGA
1 GTGGTAAGAAA-TCTGGTTGCGCCCATGAATATTAGAT-TTCGATAAGAAAATAAGTTGA
12615800 TATCAGATTT
Statistics
Matches: 364, Mismatches: 54, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
186 13 0.04
187 339 0.93
188 10 0.03
189 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (185 bp):
GTGGTAAGAAATCTGGTTGCGCCCATGAATATTAGATTTCGATAAGAAAATAAGTTGAGATCGGG
TTTTTATAAGTTGATTTAACAAATTCAGTTTCGACTGAAAATATTACCGGAATTTAGTAAATGAG
TTCATCAAAATAAGGATAGTAACAAATAAGTTGAAAGCTGAAAATGTTATCAATC
Found at i:12616899 original size:20 final size:20
Alignment explanation
Indices: 12616874--12616919 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
12616864 TCTGGATGAG
12616874 AAAGCTTGCTCAAATGCTAT
1 AAAGCTTGCTCAAATGCTAT
12616894 AAAGCTTGCTCAAATGCTAT
1 AAAGCTTGCTCAAATGCTAT
*
12616914 GAAGCT
1 AAAGCT
12616920 ATTCAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (20 bp):
AAAGCTTGCTCAAATGCTAT
Found at i:12619386 original size:28 final size:28
Alignment explanation
Indices: 12619355--12619412 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
12619345 AGAGTCGAGG
*
12619355 GTTATATGTTGTCCTTCAGGACATATAT
1 GTTATATGTGGTCCTTCAGGACATATAT
**
12619383 GTTATATGTGGTCCTTTGGGACATATAT
1 GTTATATGTGGTCCTTCAGGACATATAT
12619411 GT
1 GT
12619413 GGTCTTTCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.12, G:0.22, T:0.43
Consensus pattern (28 bp):
GTTATATGTGGTCCTTCAGGACATATAT
Found at i:12625465 original size:11 final size:11
Alignment explanation
Indices: 12625449--12625473 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12625439 AGAACAAATC
12625449 AAAACAAAGAA
1 AAAACAAAGAA
12625460 AAAACAAAGAA
1 AAAACAAAGAA
12625471 AAA
1 AAA
12625474 GGGACAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAACAAAGAA
Found at i:12627382 original size:18 final size:18
Alignment explanation
Indices: 12627351--12627403 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
12627341 GCACTAAATT
* *
12627351 TGTCCCGAATGACCACTA
1 TGTCCCAAAAGACCACTA
*
12627369 TTTCCCAAAAGACCACTA
1 TGTCCCAAAAGACCACTA
* *
12627387 TGTCCCGAAGGACCACT
1 TGTCCCAAAAGACCACT
12627404 CCATAAGAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.21
Consensus pattern (18 bp):
TGTCCCAAAAGACCACTA
Found at i:12630261 original size:867 final size:867
Alignment explanation
Indices: 12628587--12630323 Score: 3287
Period size: 867 Copynumber: 2.0 Consensus size: 867
12628577 ACACATCTAA
* *
12628587 TAACATATAACTCAGACACTCATAACAAACACATGCTCATGTTCATGCATTAATGTATAATACTA
1 TAACATATAACTCAGACACTCATAAAAAACACATGCTCATGTTCATGCATTAATGCATAATACTA
*
12628652 TAGGAAATAGACTTATCACAAGTCTTATTTCCATTAAACGCCATATACTATCTAGTATGCACTCA
66 TAGGAAATAGACTTATCACAAGTCTTATTTCCATTAAACACCATATACTATCTAGTATGCACTCA
12628717 CCTGGCCTCACTAGTCAATATCGTTCCCTGATCTCTTCTTGATGGCTATTACTTGACACCTTGTC
131 CCTGGCCTCACTAGTCAATATCGTTCCCTGATCTCTTCTTGATGGCTATTACTTGACACCTTGTC
*
12628782 CAGACATTGCTCTCGATTGATAAATACACAATCACACGTATAATATACATATCAACATTCCACTT
196 CAGACATTGCTCTCGATTGATAAATACACAATCACACATATAATATACATATCAACATTCCACTT
*
12628847 GGCATACTCTAATTTTCATTTCTTAGACTAAAGAAATATTATTTCCATTTTCCTTTATAAGTGTA
261 GGCATACTCTAATTTTCATTTCTTAGACTAAAGAAAGATTATTTCCATTTTCCTTTATAAGTGTA
*
12628912 TGGGTACACACTATAGTGTATCGGTACATTCCTTAACATGTGTATCGATACACTACCTATATATT
326 TGGGTACACACTATAGTGTATCGGTACATTCCTTAACATGTGTATCGATACACTACCTATATATC
*
12628977 GATACACAAATTACATTCGAAAGTTTTCCTGTTCAAGGGGGTATCGATACACTCCTTAATGTATC
391 GATACACAAATTACATTCAAAAGTTTTCCTGTTCAAGGGGGTATCGATACACTCCTTAATGTATC
12629042 AGTACACTTTGAACATCTTCCCATATTTTATTCTTGATGTATCGATACCTATTGAATGTGTATCG
456 AGTACACTTTGAACATCTTCCCATATTTTATTCTTGATGTATCGATACCTATTGAATGTGTATCG
12629107 ATATACTTTGCCCAGATTTTCCTTTTTGAGCCCGAAAATCACTTCATTTCCACTCAAATACTTTA
521 ATATACTTTGCCCAGATTTTCCTTTTTGAGCCCGAAAATCACTTCATTTCCACTCAAATACTTTA
12629172 TATTTCATCTCCTTTCATATTCCTAACTCACATAAACATGCTCAAACTCATTAACACCCATTTCT
586 TATTTCATCTCCTTTCATATTCCTAACTCACATAAACATGCTCAAACTCATTAACACCCATTTCT
* *
12629237 CACATCTCTAATCTTAAAATCCTATTATTTACAAGAATTTCAAGAATTATAAAAATTTTCCCACT
651 CACATCTCTAATCTTAAAATCCTATCATCTACAAGAATTTCAAGAATTATAAAAATTTTCCCACT
12629302 TGTTCTAAATTTACTTCTATCACTTCATATCTCTTAATTTAACCATTGACAAGTCAAATTTAACT
716 TGTTCTAAATTTACTTCTATCACTTCATATCTCTTAATTTAACCATTGACAAGTCAAATTTAACT
*
12629367 TTCAATTCGAGTTATGAAATCTATTCCAAGATTTCATTCAAAAACTCTAAATCTTTAATCTCTCA
781 TCCAATTCGAGTTATGAAATCTATTCCAAGATTTCATTCAAAAACTCTAAATCTTTAATCTCTCA
*
12629432 TAACTCCTTCATCTTATAGTTT
846 TAACTCCTTCATCTTATAGTGT
12629454 TAACATATAACTCAGACACTCATAAAAAACACATGCTCATGTTCATGCATTAATGCATAATACTA
1 TAACATATAACTCAGACACTCATAAAAAACACATGCTCATGTTCATGCATTAATGCATAATACTA
*
12629519 TAGGAAATAGACTTATCGCAAGTCTTATTTCCATTAAACACCATATACTATCTAGTATGCACTCA
66 TAGGAAATAGACTTATCACAAGTCTTATTTCCATTAAACACCATATACTATCTAGTATGCACTCA
* *
12629584 CCTGGCCTCACTAGTTAATATCGTTCCTTGATCTCTTCTTGATGGCTATTACTTGACACCTTGTC
131 CCTGGCCTCACTAGTCAATATCGTTCCCTGATCTCTTCTTGATGGCTATTACTTGACACCTTGTC
**
12629649 CAGACATTGCTCTCGATTGATATCTACACAATCACACATATAATATACATATCAACATTCCACTT
196 CAGACATTGCTCTCGATTGATAAATACACAATCACACATATAATATACATATCAACATTCCACTT
12629714 GGCATACTCTAATTTTCATTTCTTAGACTAAAGAAAGATTATTTCCATTTTCCTTTATAAGTGTA
261 GGCATACTCTAATTTTCATTTCTTAGACTAAAGAAAGATTATTTCCATTTTCCTTTATAAGTGTA
*
12629779 TGGGTACACACTATAGTGTATCGGTACATTCCTTAACATGTGTATCGATACACTACCTATGTATC
326 TGGGTACACACTATAGTGTATCGGTACATTCCTTAACATGTGTATCGATACACTACCTATATATC
12629844 GATACACAAATTACATTCAAAAGTTTTCCTGTTCAAGGGGGTATCGATACACTCCTTAATGTATC
391 GATACACAAATTACATTCAAAAGTTTTCCTGTTCAAGGGGGTATCGATACACTCCTTAATGTATC
12629909 AGTACACTTTGAACATCTTCCCATATTTTATTCTTGATGTATCGATACCTATTGAATGTGTATCG
456 AGTACACTTTGAACATCTTCCCATATTTTATTCTTGATGTATCGATACCTATTGAATGTGTATCG
12629974 ATATACTTTGCCCAGATTTTCCTTTTTGAGCCCGAAAATCACTTCATTTCCACTCAAATACTTTA
521 ATATACTTTGCCCAGATTTTCCTTTTTGAGCCCGAAAATCACTTCATTTCCACTCAAATACTTTA
*
12630039 TATTTCATCTCCTTTCATATTCCTAACTCACATACACATGCTCAAACTCATTAACACCCATTTCT
586 TATTTCATCTCCTTTCATATTCCTAACTCACATAAACATGCTCAAACTCATTAACACCCATTTCT
*
12630104 CACATCTCTAATCTTAAAATCCTATCATCTACATA-AATTTCAAGAATTATACAAATTTTCCCAC
651 CACATCTCTAATCTTAAAATCCTATCATCTACA-AGAATTTCAAGAATTATAAAAATTTTCCCAC
12630168 TTGTTCTAAATTTACTTCTATCACTTCATATCTCTTAATTTAACCATTGACAAGTCAAATTTAAC
715 TTGTTCTAAATTTACTTCTATCACTTCATATCTCTTAATTTAACCATTGACAAGTCAAATTTAAC
12630233 TTCCAATTCGAGTTATGAAATCTATTCCAAGATTTCATTCAAAAACTCTAAATCTTTAATCTCTC
780 TTCCAATTCGAGTTATGAAATCTATTCCAAGATTTCATTCAAAAACTCTAAATCTTTAATCTCTC
12630298 ATAACTCCTTCATCTTATAGTGT
845 ATAACTCCTTCATCTTATAGTGT
12630321 TAA
1 TAA
12630324 GACATGTAAC
Statistics
Matches: 850, Mismatches: 19, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
867 849 1.00
868 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (867 bp):
TAACATATAACTCAGACACTCATAAAAAACACATGCTCATGTTCATGCATTAATGCATAATACTA
TAGGAAATAGACTTATCACAAGTCTTATTTCCATTAAACACCATATACTATCTAGTATGCACTCA
CCTGGCCTCACTAGTCAATATCGTTCCCTGATCTCTTCTTGATGGCTATTACTTGACACCTTGTC
CAGACATTGCTCTCGATTGATAAATACACAATCACACATATAATATACATATCAACATTCCACTT
GGCATACTCTAATTTTCATTTCTTAGACTAAAGAAAGATTATTTCCATTTTCCTTTATAAGTGTA
TGGGTACACACTATAGTGTATCGGTACATTCCTTAACATGTGTATCGATACACTACCTATATATC
GATACACAAATTACATTCAAAAGTTTTCCTGTTCAAGGGGGTATCGATACACTCCTTAATGTATC
AGTACACTTTGAACATCTTCCCATATTTTATTCTTGATGTATCGATACCTATTGAATGTGTATCG
ATATACTTTGCCCAGATTTTCCTTTTTGAGCCCGAAAATCACTTCATTTCCACTCAAATACTTTA
TATTTCATCTCCTTTCATATTCCTAACTCACATAAACATGCTCAAACTCATTAACACCCATTTCT
CACATCTCTAATCTTAAAATCCTATCATCTACAAGAATTTCAAGAATTATAAAAATTTTCCCACT
TGTTCTAAATTTACTTCTATCACTTCATATCTCTTAATTTAACCATTGACAAGTCAAATTTAACT
TCCAATTCGAGTTATGAAATCTATTCCAAGATTTCATTCAAAAACTCTAAATCTTTAATCTCTCA
TAACTCCTTCATCTTATAGTGT
Found at i:12631283 original size:24 final size:24
Alignment explanation
Indices: 12631256--12631352 Score: 83
Period size: 24 Copynumber: 4.0 Consensus size: 24
12631246 CATAAAACAA
12631256 AACATAATTCAGATCATG-TATCAG
1 AACATAATTCAGATCA-GATATCAG
* * *
12631280 AACATAATCCAGGTCAGGAAAT-AG
1 AACATAATTCAGATCA-GATATCAG
*
12631304 AACA-AATTTCAGATCAGATGTCAG
1 AACATAA-TTCAGATCAGATATCAG
* * *
12631328 AACAGAATTCAAATCAGAAATCAG
1 AACATAATTCAGATCAGATATCAG
12631352 A
1 A
12631353 TAAAATATTC
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
23 5 0.09
24 49 0.84
25 4 0.07
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.22
Consensus pattern (24 bp):
AACATAATTCAGATCAGATATCAG
Found at i:12637726 original size:18 final size:18
Alignment explanation
Indices: 12637699--12637751 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
12637689 GCATTGAATT
*
12637699 TGTCTCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
12637717 TGTCCTGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
12637735 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
12637752 CCTTAAGAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:12647975 original size:2 final size:2
Alignment explanation
Indices: 12647968--12647994 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
12647958 CATGAGTTAG
12647968 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
12647995 GGAATTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12648739 original size:31 final size:31
Alignment explanation
Indices: 12648650--12648745 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 31
12648640 AGAGTCGAGG
*
12648650 GTTTACCTATG-TCTTTCGAGACATATGGACA
1 GTTTACCTATGTTCTTT-GGGACATATGGACA
* * ** *
12648681 GTATACCTATGTTATAAGGAACATATGGACA
1 GTTTACCTATGTTCTTTGGGACATATGGACA
* * *
12648712 GTTTACCTAGGTTCTTTGGGACCTATGGAAA
1 GTTTACCTATGTTCTTTGGGACATATGGACA
12648743 GTT
1 GTT
12648746 GATGTGGTTC
Statistics
Matches: 50, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
31 48 0.96
32 2 0.04
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTTCTTTGGGACATATGGACA
Found at i:12651402 original size:17 final size:17
Alignment explanation
Indices: 12651380--12651440 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 17
12651370 AACGGTCAAC
12651380 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
12651397 GGTCAACGGTCGGGTTGGGTCG
1 GGTCAACGGTC-----GGGTCG
12651419 GGTCAACGGTCGGGTC-
1 GGTCAACGGTCGGGTCG
12651435 GGTCAA
1 GGTCAA
12651441 ACTGGTTCAG
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
16 6 0.15
17 16 0.41
22 17 0.44
ACGTcount: A:0.13, C:0.21, G:0.46, T:0.20
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:12651407 original size:12 final size:12
Alignment explanation
Indices: 12651392--12651434 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
12651382 TCAACGGTCG
12651392 GGTCGGGTCAAC
1 GGTCGGGTCAAC
**
12651404 GGTCGGGT--TG
1 GGTCGGGTCAAC
12651414 GGTCGGGTCAAC
1 GGTCGGGTCAAC
12651426 GGTCGGGTC
1 GGTCGGGTC
12651435 GGTCAAACTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 8 0.32
12 17 0.68
ACGTcount: A:0.09, C:0.21, G:0.49, T:0.21
Consensus pattern (12 bp):
GGTCGGGTCAAC
Found at i:12651419 original size:22 final size:22
Alignment explanation
Indices: 12651391--12651433 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
12651381 GTCAACGGTC
12651391 GGGTCGGGTCAACGGTCGGGTT
1 GGGTCGGGTCAACGGTCGGGTT
12651413 GGGTCGGGTCAACGGTCGGGT
1 GGGTCGGGTCAACGGTCGGGT
12651434 CGGTCAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.51, T:0.21
Consensus pattern (22 bp):
GGGTCGGGTCAACGGTCGGGTT
Found at i:12651483 original size:10 final size:9
Alignment explanation
Indices: 12651466--12651504 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
12651456 TCAAACCAGT
12651466 TCGAACCGG
1 TCGAACCGG
12651475 TCGATACCGG
1 TCGA-ACCGG
*
12651485 TCAAACCGG
1 TCGAACCGG
12651494 TCAGAACCGG
1 TC-GAACCGG
12651504 T
1 T
12651505 TGAAAACTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 11 0.42
10 15 0.58
ACGTcount: A:0.26, C:0.31, G:0.28, T:0.15
Consensus pattern (9 bp):
TCGAACCGG
Found at i:12658487 original size:17 final size:17
Alignment explanation
Indices: 12658465--12658502 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
12658455 AACGGTCAAC
12658465 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
12658482 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
12658499 GGTC
1 GGTC
12658503 GGTCAAACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.47, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:12658541 original size:10 final size:9
Alignment explanation
Indices: 12658502--12658566 Score: 67
Period size: 9 Copynumber: 6.9 Consensus size: 9
12658492 CGGGTCGGGT
*
12658502 CGGTCAAAC
1 CGGTCGAAC
*
12658511 CGGTCAAAC
1 CGGTCGAAC
*
12658520 CGGTTTGAAC
1 CGG-TCGAAC
12658530 CGGTCGATAC
1 CGGTCGA-AC
*
12658540 CGGTCAAAC
1 CGGTCGAAC
12658549 CGGTCAGAAC
1 CGGTC-GAAC
12658559 CGGTCGAA
1 CGGTCGAA
12658567 AATCGGTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
9 25 0.52
10 23 0.48
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.15
Consensus pattern (9 bp):
CGGTCGAAC
Found at i:12658543 original size:29 final size:29
Alignment explanation
Indices: 12658509--12658565 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
12658499 GGTCGGTCAA
**
12658509 ACCGGTCAAACCGGTTTGAACCGGTCGAT
1 ACCGGTCAAACCGGTCAGAACCGGTCGAT
12658538 ACCGGTCAAACCGGTCAGAACCGGTCGA
1 ACCGGTCAAACCGGTCAGAACCGGTCGA
12658566 AAATCGGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.16
Consensus pattern (29 bp):
ACCGGTCAAACCGGTCAGAACCGGTCGAT
Found at i:12658563 original size:19 final size:19
Alignment explanation
Indices: 12658502--12658563 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
12658492 CGGGTCGGGT
12658502 CGGTCAAACCGGTCA-AAC
1 CGGTCAAACCGGTCAGAAC
**
12658520 CGGTTTGAACCGGTC-GATAC
1 CGG-TCAAACCGGTCAGA-AC
12658540 CGGTCAAACCGGTCAGAAC
1 CGGTCAAACCGGTCAGAAC
12658559 CGGTC
1 CGGTC
12658564 GAAAATCGGT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
18 3 0.08
19 26 0.72
20 7 0.19
ACGTcount: A:0.26, C:0.31, G:0.27, T:0.16
Consensus pattern (19 bp):
CGGTCAAACCGGTCAGAAC
Found at i:12661385 original size:64 final size:63
Alignment explanation
Indices: 12661300--12661460 Score: 182
Period size: 64 Copynumber: 2.5 Consensus size: 63
12661290 TTGTTTAAGG
* * * *
12661300 TGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCGAATAGGATTTA
* * *
12661364 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCGAATAGGATTTA
* *
12661428 TGCATCGATGTAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
12661461 ACCTTCATTA
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
63 1 0.01
64 61 0.73
65 21 0.25
66 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCAATTAAAAAAAAACATCGAATAGGATTTA
Found at i:12662724 original size:31 final size:31
Alignment explanation
Indices: 12662629--12662737 Score: 96
Period size: 31 Copynumber: 3.5 Consensus size: 31
12662619 AGAGTCGAGG
* *
12662629 GTTTACCTATG-TCTTTCGAGACATATGGACA
1 GTTTACCTAGGTTCTTT-GGGACATATGGACA
* * * ** *
12662660 GTATACCTATGTTATAAGGAACATATGGACA
1 GTTTACCTAGGTTCTTTGGGACATATGGACA
*
12662691 GTTTACCTAGGTTCTTTGGGACCTATGGACA
1 GTTTACCTAGGTTCTTTGGGACATATGGACA
* *
12662722 G-TTGCCGAGGTTCTTT
1 GTTTACCTAGGTTCTTT
12662738 ATGACCTCTG
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
30 13 0.21
31 47 0.76
32 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (31 bp):
GTTTACCTAGGTTCTTTGGGACATATGGACA
Found at i:12662735 original size:30 final size:30
Alignment explanation
Indices: 12662683--12662778 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
12662673 ATAAGGAACA
* *
12662683 TATGGACAGTTTACCTAGGTTCTTTGGGACC
1 TATGGACAG-TTACCGAGGTTCTTTGTGACC
* *
12662714 TATGGACAGTTGCCGAGGTTCTTTATGACC
1 TATGGACAGTTACCGAGGTTCTTTGTGACC
* * *
12662744 TCTGGATAGTTACCG-GGGTCTTTGTGACC
1 TATGGACAGTTACCGAGGTTCTTTGTGACC
*
12662773 TTTGGA
1 TATGGA
12662779 TAGGTCCTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 17 0.31
30 29 0.53
31 9 0.16
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.35
Consensus pattern (30 bp):
TATGGACAGTTACCGAGGTTCTTTGTGACC
Found at i:12664627 original size:37 final size:37
Alignment explanation
Indices: 12664555--12664678 Score: 180
Period size: 36 Copynumber: 3.4 Consensus size: 37
12664545 AGCGGACATC
12664555 GTCTCGCTAGAGACAGTTTTCT-TAAAAACAAATTTT
1 GTCTCGCTAGAGACAGTTTTCTCTAAAAACAAATTTT
12664591 GTCTCGCTAGAGACAGTTTTCTCTAAAAACAAATTTT
1 GTCTCGCTAGAGACAGTTTTCTCTAAAAACAAATTTT
* * * *
12664628 GTCTCGCTTGAGACA-ATTTCTCTCAAAACAAATTTC
1 GTCTCGCTAGAGACAGTTTTCTCTAAAAACAAATTTT
* *
12664664 GTCTTGCTTGAGACA
1 GTCTCGCTAGAGACA
12664679 TATTTCATTT
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 54 0.66
37 28 0.34
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (37 bp):
GTCTCGCTAGAGACAGTTTTCTCTAAAAACAAATTTT
Found at i:12664748 original size:36 final size:36
Alignment explanation
Indices: 12664701--12664778 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 36
12664691 GATACAAATT
* **
12664701 TTGAGTTTGTTTCACTTGAAACAAAA-TTGATCTCAC
1 TTGAGATTGTTTCACTCAAAACAAAATTTG-TCTCAC
**
12664737 TTGAGATTGTTTTTCTCAAAACAAAATTTGTCTCAC
1 TTGAGATTGTTTCACTCAAAACAAAATTTGTCTCAC
12664773 TTGAGA
1 TTGAGA
12664779 CAATCTTCCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 33 0.92
37 3 0.08
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (36 bp):
TTGAGATTGTTTCACTCAAAACAAAATTTGTCTCAC
Found at i:12664848 original size:99 final size:101
Alignment explanation
Indices: 12664617--12664848 Score: 222
Period size: 102 Copynumber: 2.3 Consensus size: 101
12664607 TTTTCTCTAA
* * * **
12664617 AAACAAATTTTGTCTCGCTTGAGACAATTTCTCTCAAAACAAATTTCGTCTTGCTTGAGACATAT
1 AAAC-AATTTTGTCTCACTTGAGACAGTTTTTCTCAAAACAAATTTCGTCTCACTTGAGACATAT
* * * **
12664682 TTCATTTGAGATACAAATTTTGAGTTTGTTTCACTTG
65 TTCACTTGAGAGACAAACTTTGAAATTGTTTCACTTG
** **
12664719 AAACAAAATTGATCTCACTTGAGATTGTTTTTCTCAAAACAAAATTT-GTCTCACTTGAGACA-A
1 AAACAATTTTG-TCTCACTTGAGACAGTTTTTCTCAAAAC-AAATTTCGTCTCACTTGAGACATA
**
12664782 TCTTC-CTT-A-AGACAAACTTTGAAATTGTTTCTTTTG
64 T-TTCACTTGAGAGACAAACTTTGAAATTGTTTCACTTG
* *
12664818 AAACAAGTTTTGTTTCCCTTGAGACAGTTTT
1 AAACAA-TTTTGTCTCACTTGAGACAGTTTT
12664849 CCTTGAAACA
Statistics
Matches: 104, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
99 42 0.40
100 4 0.04
101 9 0.09
102 43 0.41
103 6 0.06
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.40
Consensus pattern (101 bp):
AAACAATTTTGTCTCACTTGAGACAGTTTTTCTCAAAACAAATTTCGTCTCACTTGAGACATATT
TCACTTGAGAGACAAACTTTGAAATTGTTTCACTTG
Found at i:12665994 original size:16 final size:16
Alignment explanation
Indices: 12665959--12666007 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
12665949 CTGCTTGGCA
*
12665959 TTTGGTTTA-ATTATT
1 TTTGGTTTATTTTATT
12665974 GTTTGGTTT-TTTATATT
1 -TTTGGTTTATTT-TATT
12665991 TTTGGTTTATTTTATT
1 TTTGGTTTATTTTATT
12666007 T
1 T
12666008 CAGTCCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
16 22 0.76
17 7 0.24
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (16 bp):
TTTGGTTTATTTTATT
Found at i:12666838 original size:24 final size:25
Alignment explanation
Indices: 12666811--12666865 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
12666801 AACCACCAAA
12666811 TTTTTAAAATAA-AAGT-TATAATTG
1 TTTTTAAAATAATAA-TATATAATTG
* *
12666835 TTTTAAAAATAATAATATTTAATTG
1 TTTTTAAAATAATAATATATAATTG
12666860 TTTTTA
1 TTTTTA
12666866 TGAAAAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 12 0.46
25 14 0.54
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (25 bp):
TTTTTAAAATAATAATATATAATTG
Found at i:12667399 original size:6 final size:6
Alignment explanation
Indices: 12667345--12667395 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
12667335 CACACACACT
* *
12667345 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGAGA GAGAGA
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA
12667393 GAG
1 GAG
12667396 AGAGTAAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:12673021 original size:20 final size:21
Alignment explanation
Indices: 12672996--12673034 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12672986 TCTGTGTATA
*
12672996 TCTTTT-TTCTGTTTCCCCTC
1 TCTTTTGTTCTCTTTCCCCTC
12673016 TCTTTTGTTCTCTTTCCCC
1 TCTTTTGTTCTCTTTCCCC
12673035 CTTTTCTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.00, C:0.36, G:0.05, T:0.59
Consensus pattern (21 bp):
TCTTTTGTTCTCTTTCCCCTC
Found at i:12674109 original size:24 final size:20
Alignment explanation
Indices: 12674068--12674125 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
12674058 ATGTGAAATT
12674068 TGTCCCGAAGGACCTATGTA
1 TGTCCCGAAGGACCTATGTA
*
12674088 TGTCCCGAAGGACCTCTGTA
1 TGTCCCGAAGGACCTATGTA
** *
12674108 TGTCTTGAACGACCTATG
1 TGTCCCGAAGGACCTATG
12674126 AGCCCTCAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (20 bp):
TGTCCCGAAGGACCTATGTA
Found at i:12675103 original size:43 final size:44
Alignment explanation
Indices: 12674989--12675091 Score: 190
Period size: 44 Copynumber: 2.4 Consensus size: 44
12674979 GTATCGATAC
12674989 ACTCCTTAAGGTATCGGTACCCTTTGAACGTCTTCCTAGATTTT
1 ACTCCTTAAGGTATCGGTACCCTTTGAACGTCTTCCTAGATTTT
12675033 ACTCCTTAAGGTATCGGTACCCTTTGAACGTCTTCCTAGATTTT
1 ACTCCTTAAGGTATCGGTACCCTTTGAACGTCTTCCTAGATTTT
*
12675077 ACT-CTTGAGGTATCG
1 ACTCCTTAAGGTATCG
12675092 TGACCTGTTG
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
43 11 0.19
44 47 0.81
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.38
Consensus pattern (44 bp):
ACTCCTTAAGGTATCGGTACCCTTTGAACGTCTTCCTAGATTTT
Found at i:12689151 original size:20 final size:20
Alignment explanation
Indices: 12689126--12689183 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
12689116 ATGTGAAATT
*
12689126 TGTCCCGAATGACCTATGTA
1 TGTCCCGAAAGACCTATGTA
* * *
12689146 TGTCCCGAAGGACATCTGTA
1 TGTCCCGAAAGACCTATGTA
12689166 TGTCCCGAAAGACCTATG
1 TGTCCCGAAAGACCTATG
12689184 AACCCTTGAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (20 bp):
TGTCCCGAAAGACCTATGTA
Found at i:12702818 original size:21 final size:21
Alignment explanation
Indices: 12702776--12702819 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
12702766 TCAAAAGAAG
*
12702776 TTTTAAGATCATCAATTTTCT
1 TTTTAAGATCATCAATTATCT
*
12702797 TTTTATGATCATC-ATTGATCT
1 TTTTAAGATCATCAATT-ATCT
12702818 TT
1 TT
12702820 GAAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTAAGATCATCAATTATCT
Found at i:12702973 original size:22 final size:21
Alignment explanation
Indices: 12702931--12702970 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
12702921 GAGTTTGTTT
*
12702931 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
12702952 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
12702971 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:12708799 original size:2 final size:2
Alignment explanation
Indices: 12708756--12708781 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12708746 ATTTGAGTTG
12708756 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
12708782 CACATATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12712923 original size:30 final size:30
Alignment explanation
Indices: 12712887--12712943 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
12712877 CTAATTAAAA
12712887 TCACATATGGCT-TTAATATGTGACTAAACG
1 TCACATATGG-TGTTAATATGTGACTAAACG
*
12712917 TCACATATGGTGTTAATATGTTACTAA
1 TCACATATGGTGTTAATATGTGACTAA
12712944 CTTTTTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (30 bp):
TCACATATGGTGTTAATATGTGACTAAACG
Found at i:12717767 original size:16 final size:17
Alignment explanation
Indices: 12717746--12717778 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
12717736 AAGAAGTTGT
*
12717746 CACCAAC-CTTCAATTC
1 CACCAACGCATCAATTC
12717762 CACCAACGCATCAATTC
1 CACCAACGCATCAATTC
12717779 TCGAATCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.42, G:0.03, T:0.21
Consensus pattern (17 bp):
CACCAACGCATCAATTC
Found at i:12720209 original size:27 final size:27
Alignment explanation
Indices: 12720178--12720245 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
12720168 TCTATTTACA
*
12720178 AAATCATATCTCTATATGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
12720205 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
12720232 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
12720246 ATTCCTACAC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 9 0.22
27 31 0.77
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:12723957 original size:26 final size:27
Alignment explanation
Indices: 12723915--12723981 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
12723905 TCTATTTACA
12723915 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
*
12723942 AAATCAT-TTTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
12723968 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
12723982 ATTCCTACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 7 0.19
26 23 0.62
27 7 0.19
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:12730179 original size:16 final size:16
Alignment explanation
Indices: 12730158--12730208 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
12730148 TTCGATTGCT
12730158 TAATTTTTGTTATTTA
1 TAATTTTTGTTATTTA
***
12730174 TAA-TTTTGCCCTTTA
1 TAATTTTTGTTATTTA
12730189 -AATTTTTGTTATTT-
1 TAATTTTTGTTATTTA
12730203 TAATTT
1 TAATTT
12730209 ATGCTTTAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
14 2 0.07
15 22 0.81
16 3 0.11
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (16 bp):
TAATTTTTGTTATTTA
Found at i:12730225 original size:28 final size:29
Alignment explanation
Indices: 12730159--12730231 Score: 96
Period size: 28 Copynumber: 2.5 Consensus size: 29
12730149 TCGATTGCTT
12730159 AATTTTTGTTATTTATAATTTTGCCCTTTA
1 AATTTTTGTTATTTATAATTTTG-CCTTTA
12730189 AATTTTTGTTATTT-TAATTTATG-CTTTA
1 AATTTTTGTTATTTATAATTT-TGCCTTTA
* *
12730217 AATTATTGTTGTTTA
1 AATTTTTGTTATTTA
12730232 CGTTTTAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 17 0.44
29 6 0.15
30 16 0.41
ACGTcount: A:0.25, C:0.05, G:0.08, T:0.62
Consensus pattern (29 bp):
AATTTTTGTTATTTATAATTTTGCCTTTA
Found at i:12732147 original size:20 final size:22
Alignment explanation
Indices: 12732122--12732179 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
12732112 TTCCCCTTGA
12732122 AGTGCATCGATGCATTC-T-AC
1 AGTGCATCGATGCATTCTTAAC
*
12732142 AGTGCATCAATGCATTCTTTAAC
1 AGTGCATCGATGCATTC-TTAAC
12732165 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
12732180 CTACCCATGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 16 0.50
22 1 0.03
23 3 0.09
24 12 0.38
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (22 bp):
AGTGCATCGATGCATTCTTAAC
Found at i:12732262 original size:45 final size:45
Alignment explanation
Indices: 12732186--12732289 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
12732176 TGCACTACCC
* * * * *
12732186 ATGCATCGATACACAAATTACCTTCGTTGTTTTCAT-TTTAAGGGG
1 ATGCATCGATGCACAAATTACATTCGATG-TTTCATCTTTAAAGAG
* * *
12732231 ATGCATCGATGCACCAATTGCATTCGATGTTTCTTCTTTAAAGAG
1 ATGCATCGATGCACAAATTACATTCGATGTTTCATCTTTAAAGAG
12732276 -TGCATCGATGCACA
1 ATGCATCGATGCACA
12732290 TTGAATGTGC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 18 0.37
45 31 0.63
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (45 bp):
ATGCATCGATGCACAAATTACATTCGATGTTTCATCTTTAAAGAG
Found at i:12735063 original size:15 final size:16
Alignment explanation
Indices: 12735027--12735064 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
12735017 GGTGTGCAAA
12735027 TCCGGGTACCCGGATT
1 TCCGGGTACCCGGATT
*
12735043 TTCGGGTACCC-GATT
1 TCCGGGTACCCGGATT
12735058 TCCGGGT
1 TCCGGGT
12735065 CGACGATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.11, C:0.29, G:0.32, T:0.29
Consensus pattern (16 bp):
TCCGGGTACCCGGATT
Found at i:12735122 original size:15 final size:15
Alignment explanation
Indices: 12735102--12735158 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
12735092 CCGGATGTTA
12735102 CGGGTACCCGGTAAT
1 CGGGTACCCGGTAAT
** **
12735117 CGGGTACTTGGATTTT
1 CGGGTACCCGG-TAAT
12735133 GCGGGTACCCGGTAAT
1 -CGGGTACCCGGTAAT
12735149 CGGGTACCCG
1 CGGGTACCCG
12735159 ATACCCGGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
15 19 0.59
16 4 0.12
17 9 0.28
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.25
Consensus pattern (15 bp):
CGGGTACCCGGTAAT
Found at i:12735163 original size:22 final size:22
Alignment explanation
Indices: 12735138--12735211 Score: 148
Period size: 22 Copynumber: 3.4 Consensus size: 22
12735128 ATTTTGCGGG
12735138 TACCCGGTAATCGGGTACCCGA
1 TACCCGGTAATCGGGTACCCGA
12735160 TACCCGGTAATCGGGTACCCGA
1 TACCCGGTAATCGGGTACCCGA
12735182 TACCCGGTAATCGGGTACCCGA
1 TACCCGGTAATCGGGTACCCGA
12735204 TACCCGGT
1 TACCCGGT
12735212 TTTAATTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (22 bp):
TACCCGGTAATCGGGTACCCGA
Found at i:12736028 original size:18 final size:18
Alignment explanation
Indices: 12736005--12736155 Score: 212
Period size: 18 Copynumber: 8.4 Consensus size: 18
12735995 TTTGTTCCGT
*
12736005 AGGACCACTATGTCCAGA
1 AGGACCACTATGTCCCGA
*
12736023 AGGACCACTGTGTCCCGA
1 AGGACCACTATGTCCCGA
*
12736041 AGGACCACTGTGTCCCGA
1 AGGACCACTATGTCCCGA
12736059 AGGACCACTATGTCCCGA
1 AGGACCACTATGTCCCGA
* *
12736077 AGGACCATTATGTCCCAA
1 AGGACCACTATGTCCCGA
* * *
12736095 AGGACCACTGTTTCACGA
1 AGGACCACTATGTCCCGA
*
12736113 AGGACCATTATGTCCCGA
1 AGGACCACTATGTCCCGA
*
12736131 AAGACCACTATGTCCCGA
1 AGGACCACTATGTCCCGA
12736149 AGGACCA
1 AGGACCA
12736156 TGCAGACCCT
Statistics
Matches: 116, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 116 1.00
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.18
Consensus pattern (18 bp):
AGGACCACTATGTCCCGA
Found at i:12743636 original size:54 final size:54
Alignment explanation
Indices: 12743566--12743771 Score: 268
Period size: 54 Copynumber: 3.8 Consensus size: 54
12743556 AAATTAATAT
* * *
12743566 TTTTGAAAGAATCTAAGCCTGATATTCAAGGGTTTCTAGATGTTTTCAAATGAA
1 TTTTAAAAGAAGCTAAGCCTGATATTCAAGGGTTTCTTGATGTTTTCAAATGAA
* * *
12743620 TTTTAAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGACGTTTTCAAATGAA
1 TTTTAAAAGAAGCTAAGCCTGATATTCAAGGGTTTCTTGATGTTTTCAAATGAA
* * * *
12743674 TTTTAAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGTCTTCCAATGAA
1 TTTTAAAAGAAGCTAAGCCTGATATTCAAGGGTTTCTTGATGTTTTCAAATGAA
* * * *
12743728 TTTTTAAATAAGCTAAGCCTAATATTTTTAAGGGTTTCTTGATG
1 TTTTAAAAGAAGCTAAGCCTGATA--TTCAAGGGTTTCTTGATG
12743772 ATAACTATAA
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 119 0.88
56 16 0.12
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (54 bp):
TTTTAAAAGAAGCTAAGCCTGATATTCAAGGGTTTCTTGATGTTTTCAAATGAA
Found at i:12743821 original size:113 final size:108
Alignment explanation
Indices: 12743566--12743828 Score: 276
Period size: 108 Copynumber: 2.4 Consensus size: 108
12743556 AAATTAATAT
* * * * *
12743566 TTTTGAAAGAATCTAAGCCTGATATTCAAGGGTTTCTAGATGTTTTCAAATGAATTTTAAAAGAA
1 TTTTAAAAGAAGCCAAGCCTGATTTTCAAGGGTTTCTAGATGTCTTCAAATGAATTTTAAAAGAA
* *
12743631 GCTAAGCCTGATTTTCAGGGGTTTCTTGACGTTTTCAAATGAA
66 GCTAAGCCTGATTTTCAAGGGTTTCTTGACGTTATCAAATGAA
* * * * * *
12743674 TTTTAAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGTCTTCCAATGAATTTTTAAATAA
1 TTTTAAAAGAAGCCAAGCCTGATTTTCAAGGGTTTCTAGATGTCTTCAAATGAATTTTAAAAGAA
* * *
12743739 GCTAAGCCTAATATTTTTAAGGGTTTCTTGATGATAACTAT-AAATGAA
66 GCTAAGCCT--GATTTTCAAGGGTTTCTTGACG-T---TATCAAATGAA
* ** * *
12743787 TTTTTAAAGAAGCCAAGTTTGATTTTCAAAGGTTTCTCGATG
1 TTTTAAAAGAAGCCAAGCCTGATTTTCAAGGGTTTCTAGATG
12743829 ATAAGTCCTT
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
108 65 0.51
110 18 0.14
111 1 0.01
113 42 0.33
114 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (108 bp):
TTTTAAAAGAAGCCAAGCCTGATTTTCAAGGGTTTCTAGATGTCTTCAAATGAATTTTAAAAGAA
GCTAAGCCTGATTTTCAAGGGTTTCTTGACGTTATCAAATGAA
Found at i:12745499 original size:118 final size:117
Alignment explanation
Indices: 12745284--12745522 Score: 329
Period size: 118 Copynumber: 2.0 Consensus size: 117
12745274 GAATAAACAA
* * *
12745284 ATCAACATTTCCAATAGAAGGGTTTGTAATGAGAAGAACTCATCCGATGAGGGAGAAAAAGTTCA
1 ATCAACATTTCCAATAGAAGGGTTCGTAATGAGAAGAAATCATCCAATGAGGGAGAAAAAGTTCA
* *
12745349 TAATGAGAAGAACTTGTTCAACCTTAATTCGATTTCATCACAG-AAGGAGGTGG
66 TAATGAGAACAACTTGTTCAACCTCAATTCGA-TTCATCA-AGTAAGGAGGTGG
* * * *
12745402 ATCAACATTTTCAATGGATGGGTTCGTAATGAGAAGAAATCATCCAATGAGGGAGAAGAAGTTCA
1 ATCAACATTTCCAATAGAAGGGTTCGTAATGAGAAGAAATCATCCAATGAGGGAGAAAAAGTTCA
* * *
12745467 TAATGAGGACAACTTGTTCAACCTC-ATATCGATTCATCATGTAAGGAGTTGG
66 TAATGAGAACAACTTGTTCAACCTCAAT-TCGATTCATCAAGTAAGGAGGTGG
12745519 ATCA
1 ATCA
12745523 GTAACACCTC
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
116 1 0.01
117 22 0.21
118 84 0.79
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (117 bp):
ATCAACATTTCCAATAGAAGGGTTCGTAATGAGAAGAAATCATCCAATGAGGGAGAAAAAGTTCA
TAATGAGAACAACTTGTTCAACCTCAATTCGATTCATCAAGTAAGGAGGTGG
Found at i:12745698 original size:17 final size:17
Alignment explanation
Indices: 12745676--12745716 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
12745666 CCGACGAGAA
12745676 AGAAGAAGTTCATAATG
1 AGAAGAAGTTCATAATG
12745693 AGAAGAAGTTCATAATG
1 AGAAGAAGTTCATAATG
12745710 AGAAGAA
1 AGAAGAA
12745717 CTTGTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.51, C:0.05, G:0.24, T:0.20
Consensus pattern (17 bp):
AGAAGAAGTTCATAATG
Found at i:12746064 original size:117 final size:117
Alignment explanation
Indices: 12745692--12746101 Score: 525
Period size: 117 Copynumber: 3.5 Consensus size: 117
12745682 AGTTCATAAT
* * * * * *
12745692 GAGAAGAAGTTCATAATGAGAAGAACTTGTTTAAACTTGGTTCTATTCCATCAAATAAATAGATG
1 GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGATTCCATCACATAAAGAGGTG
* * *
12745757 GATCAACATTTCTAGTGGAGAGTTCATAATGAGAATAACTCATCCGATGAGG
66 GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAGG
* * * * * * * * * *
12745809 GATAAGAAGTTCATAATGAGAAGAATTTGTTAAACATTTGTTCAAATCCATCATATAAGGAAGTG
1 GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGATTCCATCACATAAAGAGGTG
* * *
12745874 GATCAACATTTCCAATGGA-ATGGTTCGTAATGAGAAGAACTCATCTGACGAGG
66 GATCAACATTTCCAGTGGAGA--GTTCATAATGAGAAGAACTCATCTGATGAGG
* * *
12745927 GAGAAGAATTTCATAATGAGAAGAACTTGTTCAACCTTGGTTTGATTCCATCACAGAAAGAGGTG
1 GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGATTCCATCACATAAAGAGGTG
* *
12745992 GATCAACATTTCCAGTAGAGAGTTTATAATGAGAAGAACTCATCTGATGAGG
66 GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAGG
* * *
12746044 GAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAA
1 GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGATTCCATCACATAA
12746102 TGAGTTGAAA
Statistics
Matches: 248, Mismatches: 42, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
116 1 0.00
117 150 0.60
118 96 0.39
119 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (117 bp):
GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGATTCCATCACATAAAGAGGTG
GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAGG
Found at i:12748705 original size:22 final size:22
Alignment explanation
Indices: 12748677--12748737 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
12748667 GGGTCTACGC
*
12748677 GGTCATTCGGGACATATACAGT-
1 GGTCATTCGGGACAAATACA-TA
*
12748699 GGTCATTCGAGACAAATACATA
1 GGTCATTCGGGACAAATACATA
*
12748721 GGTCATTCAGGACAAAT
1 GGTCATTCGGGACAAAT
12748738 TTCATATGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 1 0.03
22 33 0.97
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (22 bp):
GGTCATTCGGGACAAATACATA
Found at i:12749588 original size:22 final size:22
Alignment explanation
Indices: 12749563--12749615 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
12749553 TGTTCATGAC
12749563 ACTGTTCATTACTGTTTACAGT
1 ACTGTTCATTACTGTTTACAGT
* *
12749585 ACTGTTCATTACTGTTTGCGGT
1 ACTGTTCATTACTGTTTACAGT
12749607 ACTGTTCAT
1 ACTGTTCAT
12749616 ATCATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (22 bp):
ACTGTTCATTACTGTTTACAGT
Found at i:12754413 original size:3 final size:3
Alignment explanation
Indices: 12754405--12754439 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
12754395 AAAGAAAATG
*
12754405 ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
12754440 GTTTTGACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:12757474 original size:5 final size:5
Alignment explanation
Indices: 12757456--12757506 Score: 50
Period size: 5 Copynumber: 9.8 Consensus size: 5
12757446 CGTCTGTATT
* *
12757456 TTTTA TTGTTA TTTTA TTTT- TTTATA TTATA TCTTTA TTTTC TTTTA
1 TTTTA TT-TTA TTTTA TTTTA TTT-TA TTTTA T-TTTA TTTTA TTTTA
12757503 TTTT
1 TTTT
12757507 TTTAATTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 3 0.08
5 24 0.63
6 11 0.29
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:12757483 original size:21 final size:20
Alignment explanation
Indices: 12757454--12757504 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
12757444 ATCGTCTGTA
*
12757454 TTTTTTATTGTTAT-TTTATT
1 TTTTTTATT-ATATCTTTATT
12757474 TTTTTATATTATATCTTTATT
1 TTTTT-TATTATATCTTTATT
12757495 TTCTTTTATT
1 TT-TTTTATT
12757505 TTTTTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 8 0.30
21 16 0.59
22 3 0.11
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTTTATTATATCTTTATT
Found at i:12757553 original size:23 final size:23
Alignment explanation
Indices: 12757523--12757569 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
12757513 TTCAATATTA
*
12757523 TATGACACGTTTTCATTTACCTT
1 TATGACACATTTTCATTTACCTT
* *
12757546 TATGACACATTTTCTTTTGCCTT
1 TATGACACATTTTCATTTACCTT
12757569 T
1 T
12757570 TAATACGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.21, G:0.09, T:0.51
Consensus pattern (23 bp):
TATGACACATTTTCATTTACCTT
Found at i:12760164 original size:39 final size:39
Alignment explanation
Indices: 12760086--12760165 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
12760076 ATATACCAGG
**
12760086 CCTGAATGATGTGCACCTTGCTTGTCCAATTGTGTGTGA
1 CCTGAATGATGTGCACCTTGCTTGTCCAATTGTACGTGA
12760125 CCTGAATGATGTGCACCTTGCTTGTCCAATTGTACGTGA
1 CCTGAATGATGTGCACCTTGCTTGTCCAATTGTACGTGA
12760164 CC
1 CC
12760166 CTGCACACTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (39 bp):
CCTGAATGATGTGCACCTTGCTTGTCCAATTGTACGTGA
Found at i:12760831 original size:18 final size:18
Alignment explanation
Indices: 12760808--12760899 Score: 76
Period size: 18 Copynumber: 5.6 Consensus size: 18
12760798 TGAGAAGGAG
12760808 AAGAAGAAGAAGCTCAAT
1 AAGAAGAAGAAGCTCAAT
12760826 AAGAAGAAGAA--TC-AT
1 AAGAAGAAGAAGCTCAAT
* *
12760841 AA-TATAA-AA-CTCAAT
1 AAGAAGAAGAAGCTCAAT
* * *
12760856 GAGAAGAAGTAG---AAG
1 AAGAAGAAGAAGCTCAAT
12760871 AAGAAGAAGAAGCTCAAT
1 AAGAAGAAGAAGCTCAAT
12760889 AAGAAGAAGAA
1 AAGAAGAAGAA
12760900 ACATAATATA
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
13 2 0.04
14 5 0.09
15 19 0.34
16 5 0.09
17 1 0.02
18 24 0.43
ACGTcount: A:0.59, C:0.08, G:0.22, T:0.12
Consensus pattern (18 bp):
AAGAAGAAGAAGCTCAAT
Found at i:12760874 original size:63 final size:62
Alignment explanation
Indices: 12760746--12760933 Score: 287
Period size: 63 Copynumber: 3.1 Consensus size: 62
12760736 CTCAGTAAGA
* *
12760746 AGAAGAAAAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTC-A-GTG-AGAAG
1 AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAG
*
12760805 -G-AGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAACTCAATGAGAAGAAG
1 AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAG
*
12760865 TAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAACATAATATAAAGCTCAATGAGAAGAAG
1 -AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAG
12760928 AAGAAG
1 -AGAAG
12760934 TTCAATAAGA
Statistics
Matches: 117, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
57 45 0.38
58 2 0.02
59 2 0.02
60 5 0.04
62 1 0.01
63 62 0.53
ACGTcount: A:0.57, C:0.08, G:0.22, T:0.13
Consensus pattern (62 bp):
AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAG
Found at i:12760881 original size:51 final size:51
Alignment explanation
Indices: 12760746--12761217 Score: 299
Period size: 51 Copynumber: 8.6 Consensus size: 51
12760736 CTCAGTAAGA
* * *
12760746 AGAAGAAAAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAGTG
1 AGAAGAAGAAGAAGAAG---AAGAAGAAGAAGAATCATAATATAAAGCTCAATG
* *
12760800 AGAAGGAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAACTCAATGAG
1 AG-A--AGAAGAAGAAGAAG---AAGAAGAAGAAGAATCATAATATAAAGCTCAAT--G
*
12760859 AAGAAGTAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAACATAATATAAAGCTCAAT-
1 -AG-A--AGAAGAAGAAGAAGAAG------AAGAAGAAGAATCATAATATAAAGCTCAATG
*** * *
12760919 -G-AGAAGAAGAAGAAGTTCAATAAGAAGAATCATAATATAAAGTTCAATGAG
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCATAATATAAAGCTCAAT--G
*
12760970 AAGAAGAAGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATTATAATATAAAGCTCAATG
1 -AGAAGAAG---AAGAAGAAGAAG------AAGAAGAAGAATCATAATATAAAGCTCAATG
* * * * *
12761031 AGAAGAAGTAGAAGTAGAAGAAGAACAAGAA-CA-AGA-AGAAGATGCTCAATA
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCATA-ATATAA-A-GCTCAATG
* *
12761082 AGAAGAAGAAGAAGAAGTTCAATAAGAAGAAGAATCATAATATAAAGTTCAATG
1 AGAAGAAGAAGAAGAAG---AAGAAGAAGAAGAATCATAATATAAAGCTCAATG
* *** * *
12761136 AGAAAAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAACTCAATG
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCATAATATAAAGCTCAATG
* * *
12761187 AGAAGAAGTAGAAGTAGTAGAAGAAGAAGAA
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
12761218 GAAGAAGCTC
Statistics
Matches: 337, Mismatches: 45, Indels: 75
0.74 0.10 0.16
Matches are distributed among these distances:
48 27 0.08
49 4 0.01
50 3 0.01
51 88 0.26
53 1 0.00
54 52 0.15
55 5 0.01
56 4 0.01
57 68 0.20
58 1 0.00
59 1 0.00
60 27 0.08
61 1 0.00
63 55 0.16
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.15
Consensus pattern (51 bp):
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCATAATATAAAGCTCAATG
Found at i:12760945 original size:15 final size:15
Alignment explanation
Indices: 12760925--12761008 Score: 59
Period size: 15 Copynumber: 5.6 Consensus size: 15
12760915 CAATGAGAAG
12760925 AAGAAGAAGTTCAAT
1 AAGAAGAAGTTCAAT
12760940 AAGAAGAA--TC-AT
1 AAGAAGAAGTTCAAT
*
12760952 AATATA-AAGTTCAAT
1 AAGA-AGAAGTTCAAT
** *
12760967 GAGAAGAAGAAGAACAAG
1 ---AAGAAGAAGTTCAAT
*
12760985 AAGAAGAAGCTCAAT
1 AAGAAGAAGTTCAAT
12761000 AAGAAGAAG
1 AAGAAGAAG
12761009 AATTATAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
12 7 0.13
13 3 0.06
14 2 0.04
15 31 0.58
17 1 0.02
18 9 0.17
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (15 bp):
AAGAAGAAGTTCAAT
Found at i:12760945 original size:63 final size:59
Alignment explanation
Indices: 12760724--12760933 Score: 293
Period size: 57 Copynumber: 3.5 Consensus size: 59
12760714 TGAAAAGGAC
* * *
12760724 CATAATACAAAGCTCAGTAAGAAGAAGA-AA-AAGAAGAAGCTCAATAAGAAGAAGAAT
1 CATAATATAAAGCTCAATGAGAAGAAGAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAT
*
12760781 CATAATATAAAGCTCAGTGAGAAG--GAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAT
1 CATAATATAAAGCTCAATGAGAAGAAGAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAT
* *
12760838 CATAATATAAAACTCAATGAGAAGAAGTAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAA
1 CATAATATAAAGCTCAATGAGAAG-A--AG-AGAAGAAGAAGAAGCTCAATAAGAAGAAGAAT
12760901 CATAATATAAAGCTCAATGAGAAGAAGAAGAAG
1 CATAATATAAAGCTCAATGAGAAGAAG-AGAAG
12760934 TTCAATAAGA
Statistics
Matches: 139, Mismatches: 6, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
55 2 0.01
56 2 0.01
57 71 0.51
60 8 0.06
62 2 0.01
63 54 0.39
ACGTcount: A:0.56, C:0.09, G:0.21, T:0.13
Consensus pattern (59 bp):
CATAATATAAAGCTCAATGAGAAGAAGAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAT
Found at i:12760957 original size:111 final size:112
Alignment explanation
Indices: 12760746--12761212 Score: 535
Period size: 111 Copynumber: 4.2 Consensus size: 112
12760736 CTCAGTAAGA
* *
12760746 AGAAGAAAAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAGTGAGAAGGAGAAG
1 AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTC------AATGAGAAG
12760811 AAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAACTCAATGAGAAGAAGT
60 AAGAAGAAGCTCAAT-A-AAGAAGAATCATAATATAAAACTCAATGAGAAGAAGT
*
12760866 AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAACATAATATAAAGCTCAATGAGAAGAAGAAG
1 AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAAG
* ** *
12760931 AAGTTCAAT-AAGAAGAATCATAATATAAAGTTCAATGAGAAGAAGA
66 AAGCTCAATAAAGAAGAATCATAATATAAAACTCAATGAGAAGAAGT
* * *
12760977 AGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATTATAATATAAAGCTCAATGAGAAGAAGTAG
1 AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAAG
* * * ***
12761042 AAG-T--A-GAAGAAGAA-CA-AGA-ACAAGAA--GAA-GATGCTCAA-T
66 AAGCTCAATAAAGAAGAATCATA-ATATAA-AACTCAATGA-GAAGAAGT
* * *
12761081 AAGAAGAAGAAGAAGAAGTTCAATAAGAAGAAGAATCATAATATAAAGTTCAATGAGAAAAAGAA
1 -AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAA
12761146 GAAGCTCAATAAGAAGAAGAATCATAATATAAAACTCAATGAGAAGAAGT
65 GAAGCTCAAT-A-AAGAAGAATCATAATATAAAACTCAATGAGAAGAAGT
* *
12761196 AGAAGTAGTAGAAGAAG
1 AGAAGAAGAAGAAGAAG
12761213 AAGAAGAAGA
Statistics
Matches: 297, Mismatches: 32, Indels: 42
0.80 0.09 0.11
Matches are distributed among these distances:
104 2 0.01
105 67 0.23
106 5 0.02
107 4 0.01
108 10 0.03
110 1 0.00
111 106 0.36
112 5 0.02
113 4 0.01
114 42 0.14
115 3 0.01
120 48 0.16
ACGTcount: A:0.56, C:0.07, G:0.21, T:0.15
Consensus pattern (112 bp):
AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAAG
AAGCTCAATAAAGAAGAATCATAATATAAAACTCAATGAGAAGAAGT
Found at i:12760976 original size:30 final size:30
Alignment explanation
Indices: 12760940--12761038 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 30
12760930 GAAGTTCAAT
*
12760940 AAGAAGAATCATAATATAAAGTTCAATGAG
1 AAGAAGAATCATAATATAAAGCTCAATGAG
* * * *
12760970 AAGAAGAAGAACAAGAAGA-AGAAGCTCAATAAG
1 AAGAAG-A-ATC-ATAATATA-AAGCTCAATGAG
*
12761003 AAGAAGAATTATAATATAAAGCTCAATGAG
1 AAGAAGAATCATAATATAAAGCTCAATGAG
12761033 AAGAAG
1 AAGAAG
12761039 TAGAAGTAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
30 27 0.50
31 3 0.06
32 4 0.07
33 20 0.37
ACGTcount: A:0.57, C:0.07, G:0.20, T:0.16
Consensus pattern (30 bp):
AAGAAGAATCATAATATAAAGCTCAATGAG
Found at i:12760993 original size:48 final size:48
Alignment explanation
Indices: 12760872--12760993 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
12760862 AAGTAGAAGA
** *
12760872 AGAAGAAGAAGCTCAATAAGAAGAAGAAACATAATATAAAGCTCAATG
1 AGAAGAAGAAGAACAACAAGAAGAAGAAACATAATATAAAGCTCAATG
*** * * *
12760920 AGAAGAAGAAGAAGTTCAATAAGAAGAATCATAATATAAAGTTCAATG
1 AGAAGAAGAAGAACAACAAGAAGAAGAAACATAATATAAAGCTCAATG
*
12760968 AGAAGAAGAAGAACAAGAAGAAGAAG
1 AGAAGAAGAAGAACAACAAGAAGAAG
12760994 CTCAATAAGA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (48 bp):
AGAAGAAGAAGAACAACAAGAAGAAGAAACATAATATAAAGCTCAATG
Found at i:12761067 original size:75 final size:75
Alignment explanation
Indices: 12760971--12761285 Score: 308
Period size: 75 Copynumber: 4.1 Consensus size: 75
12760961 TTCAATGAGA
*
12760971 AGAAGAAGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATTATAATATAAAGCTCAATGAGAAG
1 AGAAGAAGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAG
12761036 AAGTAGAAGT
66 AAGTAGAAGT
* * *
12761046 AGAAGAAGAACAAGAACAAGAAGAAGATGCTCAATAAGAAGAAG-A--A-GA-A-GAAGTTCAAT
1 AGAAGAAGAACAAG---AAGAAG-A-A-GCTCAATAAGAAGAAGAATCATAATATAAAGCTCAAT
* *
12761105 AAGAAGAAGAATCATAA-T
60 GAGAAGAAG--T-AGAAGT
* *
12761123 ATAAAGTTCAATGAGA-AA-AAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAACTCAAT
1 A-GAAG---AA-GA-ACAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAAT
12761186 GAGAAGAAGTAGAAGT
60 GAGAAGAAGTAGAAGT
* * *
12761202 AGTAGAAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAACATAATATAAAGCTCAATGAGAAG
1 AGAAGAAGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAG
* *
12761267 AAG-AAAAGA
66 AAGTAGAAGT
12761276 AGAAGAAGAA
1 AGAAGAAGAA
12761286 GTTCAATAAG
Statistics
Matches: 197, Mismatches: 19, Indels: 49
0.74 0.07 0.18
Matches are distributed among these distances:
73 1 0.01
74 17 0.09
75 100 0.51
76 3 0.02
77 5 0.03
78 25 0.13
79 5 0.03
80 3 0.02
81 33 0.17
82 4 0.02
83 1 0.01
ACGTcount: A:0.58, C:0.07, G:0.22, T:0.13
Consensus pattern (75 bp):
AGAAGAAGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAG
AAGTAGAAGT
Found at i:12761071 original size:63 final size:63
Alignment explanation
Indices: 12760920--12761072 Score: 182
Period size: 63 Copynumber: 2.4 Consensus size: 63
12760910 AAGCTCAATG
* ** * *
12760920 AGAAGAAGAAGAAGTTCAATAAGAAGAATCATAATATAAAGTTCAATGAGAAGAAGAAGAACA
1 AGAAGAAGAACAAGAACAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAAGAACA
** * * * **
12760983 AGAAGAAGAAGC-TCAATAAGAAGAAGAATTATAATATAAAGCTCAATGAGAAGAAGTAGAAGT
1 AGAAGAAGAA-CAAGAACAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAAGAACA
12761046 AGAAGAAGAACAAGAACAAGAAGAAGA
1 AGAAGAAGAACAAGAACAAGAAGAAGA
12761073 TGCTCAATAA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
62 1 0.01
63 72 0.99
ACGTcount: A:0.58, C:0.07, G:0.22, T:0.14
Consensus pattern (63 bp):
AGAAGAAGAACAAGAACAAGAAGAAGAATCATAATATAAAGCTCAATGAGAAGAAGAAGAACA
Found at i:12761084 original size:24 final size:24
Alignment explanation
Indices: 12761057--12761241 Score: 99
Period size: 24 Copynumber: 7.5 Consensus size: 24
12761047 GAAGAAGAAC
* *
12761057 AAGAACAAGAAGAAGATGCTCAAT
1 AAGAAGAAGAAGAAGAAGCTCAAT
*
12761081 AAGAAGAAGAAGAAGAAGTTCAAT
1 AAGAAGAAGAAGAAGAAGCTCAAT
** * ** *
12761105 AAGAAGAAGAATCATAATATAAAGTT
1 AAGAAGAAGAAGAAGAAGCTCAA--T
*
12761131 CAATG-AGAAAAAGAAGAAGCTCAAT
1 -AA-GAAGAAGAAGAAGAAGCTCAAT
* * *
12761156 AAGAAGAAGAATCATAATATAAAACTCAAT
1 AAGAAGAAG-A--A-GA-A-GAAGCTCAAT
* * * *
12761186 GAGAAGAAGTAGAAGTAG-T--AG
1 AAGAAGAAGAAGAAGAAGCTCAAT
12761207 AAGAAGAAGAAGAAGAAGCTCAAT
1 AAGAAGAAGAAGAAGAAGCTCAAT
12761231 AAGAAGAAGAA
1 AAGAAGAAGAA
12761242 ACATAATATA
Statistics
Matches: 116, Mismatches: 31, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
21 16 0.14
22 1 0.01
23 2 0.02
24 57 0.49
25 3 0.03
26 2 0.02
27 16 0.14
28 2 0.02
29 1 0.01
30 16 0.14
ACGTcount: A:0.57, C:0.07, G:0.22, T:0.14
Consensus pattern (24 bp):
AAGAAGAAGAAGAAGAAGCTCAAT
Found at i:12761115 original size:3 final size:3
Alignment explanation
Indices: 12761031--12761098 Score: 55
Period size: 3 Copynumber: 22.7 Consensus size: 3
12761021 AAGCTCAATG
* * * * * * **
12761031 AGA AGA AGT AGA AGT AGA AGA AGA ACA AGA ACA AGA AGA AGA TGC TCA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
12761079 ATA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AG
12761099 TTCAATAAGA
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.59, C:0.06, G:0.28, T:0.07
Consensus pattern (3 bp):
AGA
Found at i:12761184 original size:105 final size:104
Alignment explanation
Indices: 12760724--12761200 Score: 444
Period size: 105 Copynumber: 4.3 Consensus size: 104
12760714 TGAAAAGGAC
* *
12760724 CATAATACAAAGCTCAGTAAGAAGAAGAAAAAGAAGAAGCTCAATAAGAAGAAGAATCATAATAT
1 CATAATATAAAGCTCAATAAGAAGAAG---AAGAAGAAGCTCAATAAGAAGAAGAATCATAATAT
*
12760789 AAAGCTCAGTGAGAAGGAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAT
63 AAAGCTC------AATGAGAAGAAGAAGAAG-TCAATAAGAAGAAGAAT
* *
12760838 CATAATATAAAACTCAATGAGAAGAAGTAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAAACA
1 CATAATATAAAGCTCAAT-------A--AGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCA
12760903 TAATATAAAGCTCAATGAGAAGAAGAAGAAGTTCAAT---AAGAAGAAT
57 TAATATAAAGCTCAATGAGAAGAAGAAGAAG-TCAATAAGAAGAAGAAT
* *
12760949 CATAATATAAAGTTCAATGAGAAGAAGAAGAACAAGAAGAAGAAGCTCAATAAGAAGAAGAATTA
1 CATAATATAAAGCTCAAT------AAGAAG---AAGAAGAAGAAGCTCAATAAGAAGAAGAATCA
* * * *
12761014 TAATATAAAGCTCAATGAGAAGAAGTAGAAGTAGAAGAAGAACAAGAA-
57 TAATATAAAGCTCAATGAGAAGAAGAAGAAGT-CAATAAGAAGAAGAAT
* *
12761062 CA-AGA-AGAAGATGCTCAATAAGAAGAAGAAGAAGAAGTTCAATAAGAAGAAGAATCATAATAT
1 CATA-ATATAA-A-GCTCAATAAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATAT
* *
12761125 AAAGTTCAATGAGAAAAAGAAGAAGCTCAATAAGAAGAAGAAT
63 AAAGCTCAATGAGAAGAAGAAGAAG-TCAATAAGAAGAAGAAT
* * *
12761168 CATAATATAAAACTCAATGAGAAGAAGTAGAAG
1 CATAATATAAAGCTCAATAAGAAGAAGAAGAAG
12761201 TAGTAGAAGA
Statistics
Matches: 307, Mismatches: 33, Indels: 55
0.78 0.08 0.14
Matches are distributed among these distances:
105 89 0.29
106 5 0.02
107 4 0.01
108 11 0.04
110 3 0.01
111 87 0.28
112 4 0.01
113 4 0.01
114 50 0.16
120 41 0.13
121 1 0.00
123 8 0.03
ACGTcount: A:0.56, C:0.08, G:0.21, T:0.15
Consensus pattern (104 bp):
CATAATATAAAGCTCAATAAGAAGAAGAAGAAGAAGCTCAATAAGAAGAAGAATCATAATATAAA
GCTCAATGAGAAGAAGAAGAAGTCAATAAGAAGAAGAAT
Found at i:12761205 original size:9 final size:9
Alignment explanation
Indices: 12761187--12761221 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
12761177 AAACTCAATG
12761187 AGAAGAAGT
1 AGAAGAAGT
*
12761196 AGAAGTAGT
1 AGAAGAAGT
*
12761205 AGAAGAAGA
1 AGAAGAAGT
12761214 AGAAGAAG
1 AGAAGAAG
12761222 AAGCTCAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.34, T:0.09
Consensus pattern (9 bp):
AGAAGAAGT
Found at i:12761234 original size:15 final size:15
Alignment explanation
Indices: 12761216--12761421 Score: 86
Period size: 15 Copynumber: 13.6 Consensus size: 15
12761206 GAAGAAGAAG
12761216 AAGAAGAAGCTCAAT
1 AAGAAGAAGCTCAAT
**
12761231 AAGAAGAAG-AAACAT
1 AAGAAGAAGCTCA-AT
*
12761246 AATATA-AAGCTCAAT
1 AAGA-AGAAGCTCAAT
* *** *
12761261 GAGAAGAAGAAAAGAAG
1 AAGAAGAAG--CTCAAT
*
12761278 AAGAAGAAGTTCAAT
1 AAGAAGAAGCTCAAT
12761293 AAGAAGAA-C-C-AT
1 AAGAAGAAGCTCAAT
* *
12761305 AATATA-AAGTTCAAT
1 AAGA-AGAAGCTCAAT
** *
12761320 AAGAAGAAGAACAAG
1 AAGAAGAAGCTCAAT
12761335 AAGAAGAAGCTCAAT
1 AAGAAGAAGCTCAAT
*
12761350 AAGAAGAAGAGTC-AT
1 AAGAAGAAG-CTCAAT
*
12761365 AATATA-AAGCTCAAT
1 AAGA-AGAAGCTCAAT
*** *
12761380 AAGAAGAAGAAGAAA
1 AAGAAGAAGCTCAAT
12761395 AAGAAGAAGATGCTCAAT
1 AAGAAG-A-A-GCTCAAT
12761413 AAGAAGAAG
1 AAGAAGAAG
12761422 AATCATAATA
Statistics
Matches: 135, Mismatches: 38, Indels: 36
0.65 0.18 0.17
Matches are distributed among these distances:
12 7 0.05
13 2 0.01
14 7 0.05
15 91 0.67
16 7 0.05
17 12 0.09
18 9 0.07
ACGTcount: A:0.58, C:0.08, G:0.20, T:0.13
Consensus pattern (15 bp):
AAGAAGAAGCTCAAT
Found at i:12761440 original size:30 final size:29
Alignment explanation
Indices: 12761222--12761448 Score: 181
Period size: 30 Copynumber: 7.5 Consensus size: 29
12761212 GAAGAAGAAG
12761222 AAGCTCAATAAGAAGAAGAAACATAATATA
1 AAGCTCAATAAGAAGAAG-AACATAATATA
* * * * *
12761252 AAGCTCAATGAGAAGAAGAAAAGAAGAAGAA
1 AAGCTCAATAAGAAGAAGAACATAA-TA-TA
* *
12761283 GAAGTTCAATAAGAAG-A-ACCATAATATA
1 -AAGCTCAATAAGAAGAAGAACATAATATA
* * *
12761311 AAGTTCAATAAGAAGAAGAACAAGAAGA-A
1 AAGCTCAATAAGAAGAAGAAC-ATAATATA
*
12761340 GAAGCTCAATAAGAAGAAGAGTCATAATATA
1 -AAGCTCAATAAGAAGAAGA-ACATAATATA
* * * *
12761371 AAGCTCAATAAGAAGAAGAAGAAAAAGAAGA
1 AAGCTCAATAAGAAGAAGAA-CATAA-TATA
12761402 AGATGCTCAATAAGAAGAAGAATCATAATATA
1 A-A-GCTCAATAAGAAGAAGAA-CATAATATA
*
12761434 AAGCTCAATGAGAAG
1 AAGCTCAATAAGAAG
12761449 GAGGAGGAGG
Statistics
Matches: 154, Mismatches: 30, Indels: 26
0.73 0.14 0.12
Matches are distributed among these distances:
27 15 0.10
28 2 0.01
29 9 0.06
30 82 0.53
31 8 0.05
32 17 0.11
33 21 0.14
ACGTcount: A:0.57, C:0.09, G:0.19, T:0.15
Consensus pattern (29 bp):
AAGCTCAATAAGAAGAAGAACATAATATA
Found at i:12761997 original size:16 final size:18
Alignment explanation
Indices: 12761976--12762009 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12761966 AATAAATTAT
12761976 ACTTAA-ATT-TAAATAA
1 ACTTAATATTATAAATAA
12761992 ACTTAATATTATAAATAA
1 ACTTAATATTATAAATAA
12762010 TGTAATATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 3 0.19
18 7 0.44
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
ACTTAATATTATAAATAA
Found at i:12762038 original size:13 final size:13
Alignment explanation
Indices: 12761988--12762043 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
12761978 TTAAATTTAA
12761988 ATAAACTTAATATT
1 ATAAA-TTAATATT
*
12762002 ATAAA-TAATGTAAT
1 ATAAATTAA--TATT
**
12762016 ATGCATTAATATT
1 ATAAATTAATATT
12762029 ATAAATTAATATT
1 ATAAATTAATATT
12762042 AT
1 AT
12762044 TCTTATAGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
12 3 0.09
13 16 0.48
14 11 0.33
15 3 0.09
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (13 bp):
ATAAATTAATATT
Found at i:12762170 original size:22 final size:23
Alignment explanation
Indices: 12762145--12762190 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
12762135 ACTTGTAATC
12762145 ACCCCAGATTAA-AATAAAATAG
1 ACCCCAGATTAATAATAAAATAG
*
12762167 ACCCTAGATTAATAATAAAATAG
1 ACCCCAGATTAATAATAAAATAG
12762190 A
1 A
12762191 ATATAATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.54, C:0.15, G:0.09, T:0.22
Consensus pattern (23 bp):
ACCCCAGATTAATAATAAAATAG
Found at i:12762455 original size:2 final size:2
Alignment explanation
Indices: 12762443--12762494 Score: 79
Period size: 2 Copynumber: 26.0 Consensus size: 2
12762433 ATAACTTAAA
12762443 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
12762485 AC AT AT AT AT
1 AT AT AT AT AT
12762495 GTATGTATGT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 1 0.02
2 43 0.93
3 2 0.04
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12765437 original size:20 final size:20
Alignment explanation
Indices: 12765412--12765466 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
12765402 ATGTTAAGGG
12765412 ATGCATCGATACACTGTAGA
1 ATGCATCGATACACTGTAGA
12765432 ATGCATCGATACACTGTAGA
1 ATGCATCGATACACTGTAGA
*
12765452 ATGCATCGATGCACT
1 ATGCATCGATACACT
12765467 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (20 bp):
ATGCATCGATACACTGTAGA
Done.