Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 59 of 62
Found at i:13772168 original size:22 final size:22
Alignment explanation
Indices: 13772145--13772206 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 22
13772135 CAAAAAGGGC
13772145 AAAAAGAAAAAATAAAAGAAGCA
1 AAAAAGAAAAAA-AAAAGAAGCA
* *
13772168 AAAAAGGAAAAAACAAGAA-CA
1 AAAAAGAAAAAAAAAAGAAGCA
13772189 AAAAAGAAAGAACAAAAA
1 AAAAAGAAA-AA-AAAAA
13772207 TAAAAAATGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 10 0.30
22 8 0.24
23 15 0.45
ACGTcount: A:0.79, C:0.06, G:0.13, T:0.02
Consensus pattern (22 bp):
AAAAAGAAAAAAAAAAGAAGCA
Found at i:13772197 original size:20 final size:20
Alignment explanation
Indices: 13772145--13772213 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
13772135 CAAAAAGGGC
*
13772145 AAAAAGAAAAAATAAAAGAAGCA
1 AAAAAG-AAAAA-ACAAGAA-CA
13772168 AAAAAGGAAAAAACAAGAACA
1 AAAAA-GAAAAAACAAGAACA
* * *
13772189 AAAAAGAAAGAACAAAAATA
1 AAAAAGAAAAAACAAGAACA
13772209 AAAAA
1 AAAAA
13772214 TGGAACAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 17 0.41
21 7 0.17
22 6 0.15
23 10 0.24
24 1 0.02
ACGTcount: A:0.80, C:0.06, G:0.12, T:0.03
Consensus pattern (20 bp):
AAAAAGAAAAAACAAGAACA
Found at i:13773759 original size:36 final size:36
Alignment explanation
Indices: 13773712--13773816 Score: 156
Period size: 37 Copynumber: 2.9 Consensus size: 36
13773702 GTGCTCATCA
*
13773712 TTGTCTATCTTGAGACAGTTTCCCTTGAAACAAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
*
13773748 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAACT
* * *
13773785 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
13773817 TAAACATTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 31 0.49
37 32 0.51
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
Found at i:13773979 original size:36 final size:36
Alignment explanation
Indices: 13773932--13774016 Score: 109
Period size: 36 Copynumber: 2.4 Consensus size: 36
13773922 ATTGGAAACA
** * *
13773932 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
*
13773968 TTTCCCTTGAAACAAATTTTGTCTCCCTTTAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
*
13774004 TTTCTC-TGAAACA
1 TTTCCCTTGAAACA
13774017 TAAACATGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 7 0.16
36 36 0.84
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
Found at i:13774055 original size:99 final size:102
Alignment explanation
Indices: 13773730--13774116 Score: 642
Period size: 100 Copynumber: 3.9 Consensus size: 102
13773720 CTTGAGACAG
** * * *
13773730 TTTCCCTTGAAACAAACTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTTTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
13773795 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
*
13773832 TTTCCCTTGAAATG-ATTTTGT-TCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTTTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
*
13773895 TGAGACAGTTTCTCTTGAAACATAAACATTGGAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
13773932 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC-AAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
*
13773996 TTAGACAGTTTCTC-TGAAACATAAACA-TGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* *
13774031 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATAATTTCCCTTGAAAC-AAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
13774095 TGAGACAGTTTCTCTTGAAACA
66 TGAGACAGTTTCTCTTGAAACA
13774117 CAAAACTTTG
Statistics
Matches: 271, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
99 82 0.30
100 111 0.41
101 40 0.15
102 38 0.14
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (102 bp):
TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:13774077 original size:36 final size:36
Alignment explanation
Indices: 13774030--13774116 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
13774020 ACATGAAAAC
** * *
13774030 ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATA
1 ATTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACA
*
13774066 ATTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 ATTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACA
* *
13774102 GTTTCTCTTGAAACA
1 ATTTCCCTTGAAACA
13774117 CAAAACTTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (36 bp):
ATTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACA
Found at i:13775193 original size:106 final size:107
Alignment explanation
Indices: 13774733--13775362 Score: 590
Period size: 109 Copynumber: 5.9 Consensus size: 107
13774723 TAGCTAGAGT
* * * *
13774733 CAAGTTCAACTTCACAACGAATGGACGGCTGGTTGCCAACAACAATTTCCCAATTTCGGAACCGA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAACAATTTCCCAATTTCAGAACCAA
* * *
13774798 TTTCAACTCCACGACGGATGATATCGTGCTACCCGAGACAACA
66 TTTCAACTCCACGACGGAGGATATC-TGCGACTCGAGACAACA
* * *
13774841 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTCCCAATTCCAGAACCG
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AACAATTTCCCAATTTCAGAACCA
* * *
13774906 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGAAAACA
65 ATTTCAACTCCACGACGGAGGATATC-TGCGACTCGAGACAACA
* * * **
13774950 CAAGTCCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTT-TCAGTTTCA-TCCG
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AACAA-TTTCCCAATTTCAGAAC-
* * *
13775013 CGATTTCAACTCCACGACGGAGGATATCGTGCCACTCAAGACAACA
63 CAATTTCAACTCCACGACGGAGGATATC-TGCGACTCGAGACAACA
* * * * * * *
13775059 CAAGTTCAACTTCACAATGAAGGGACAGCTCGTTGTCAACAAACATTTTTCAAATTTCAGAGCCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AACAATTTCCCAATTTCAGAACCA
* *
13775124 ATTTCAACTTCAC-AGCGAAGGATAT-TG-GACTCGAGACAACA
65 ATTTCAACTCCACGA-CGGAGGATATCTGCGACTCGAGACAACA
* * * * * **
13775165 CAAGTTCAACTTCACAACGAATGGACAGCTGATTGTCAACAA-GATTT--C--GTTCAGAGTCAA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAACAATTTCCCAATTTCAGAACCAA
* * * *
13775225 TTTCAACTTCAC-AGCGAAGGATAT-T-AGACTCGAGACAGCA
66 TTTCAACTCCACGA-CGGAGGATATCTGCGACTCGAGACAACA
* * * ** ** *
13775265 CAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAATTTCCCGGTTCCAGAACCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AACAATTTCCCAATTTCAGAACCA
*
13775330 ATTTCAACTTCAC-AGCGGAGGATAT-TG-GACTCG
65 ATTTCAACTCCACGA-CGGAGGATATCTGCGACTCG
13775363 GAACAATATT
Statistics
Matches: 452, Mismatches: 56, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
100 82 0.18
101 2 0.00
102 4 0.01
104 4 0.01
105 2 0.00
106 86 0.19
107 2 0.00
108 43 0.10
109 224 0.50
110 3 0.01
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (107 bp):
CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAACAATTTCCCAATTTCAGAACCAA
TTTCAACTCCACGACGGAGGATATCTGCGACTCGAGACAACA
Found at i:13775831 original size:36 final size:37
Alignment explanation
Indices: 13775773--13775874 Score: 118
Period size: 37 Copynumber: 2.8 Consensus size: 37
13775763 CGTTACACGA
13775773 CTATGGATTCAAACT-CTCAAAAATAGGATAGAATTCTG
1 CTATGGATTC-AACTCCT-AAAAATAGGATAGAATTCTG
* *
13775811 CTA-GGATTCAACTCCTAAAAATATGATAGAATTTTG
1 CTATGGATTCAACTCCTAAAAATAGGATAGAATTCTG
** * *
13775847 CTATGTTTTAAACTCCTAAAGATAGGAT
1 CTATGGATTCAACTCCTAAAAATAGGAT
13775875 CCACAAGCAC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
36 25 0.45
37 27 0.49
38 3 0.05
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (37 bp):
CTATGGATTCAACTCCTAAAAATAGGATAGAATTCTG
Found at i:13776338 original size:11 final size:11
Alignment explanation
Indices: 13776318--13776403 Score: 50
Period size: 11 Copynumber: 7.3 Consensus size: 11
13776308 TTAATTATTT
*
13776318 TTATTCTAATA
1 TTATTTTAATA
*
13776329 TTATTTTAATG
1 TTATTTTAATA
13776340 TT-TTTTAA-A
1 TTATTTTAATA
13776349 GTTATTATATATATA
1 -TTATT-T-TA-ATA
13776364 TATATTTATAACTA
1 T-TATTT-TAA-TA
*
13776378 TTATATTTATTA
1 TTAT-TTTAATA
*
13776390 TTATTTTACTA
1 TTATTTTAATA
13776401 TTA
1 TTA
13776404 ACGTATATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
10 8 0.13
11 22 0.36
12 7 0.11
13 8 0.13
14 11 0.18
15 5 0.08
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.59
Consensus pattern (11 bp):
TTATTTTAATA
Found at i:13776476 original size:10 final size:10
Alignment explanation
Indices: 13776461--13776487 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
13776451 ATGAATATTT
13776461 TTTTATTGTA
1 TTTTATTGTA
13776471 TTTTATTGTA
1 TTTTATTGTA
13776481 TTTTATT
1 TTTTATT
13776488 TTTACTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (10 bp):
TTTTATTGTA
Found at i:13776600 original size:16 final size:16
Alignment explanation
Indices: 13776579--13776612 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13776569 CATGTATTTA
13776579 TATTATATTACATTAT
1 TATTATATTACATTAT
* *
13776595 TATTATTTTACTTTAT
1 TATTATATTACATTAT
13776611 TA
1 TA
13776613 AATTATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATATTACATTAT
Found at i:13776617 original size:21 final size:22
Alignment explanation
Indices: 13776593--13776643 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
13776583 ATATTACATT
*
13776593 ATTATTATTTTACTTTATTA-A
1 ATTATTATTTTACGTTATTATA
* *
13776614 ATTATTTTTTTTCGTTATTATA
1 ATTATTATTTTACGTTATTATA
*
13776636 TTTATTAT
1 ATTATTAT
13776644 ATATATATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (22 bp):
ATTATTATTTTACGTTATTATA
Found at i:13778377 original size:18 final size:19
Alignment explanation
Indices: 13778336--13778390 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 19
13778326 TCTCTTTAAA
* *
13778336 ATTTTAAATTTTCA-TATA
1 ATTTTAAATTTTCATTTTT
13778354 ATTTTAAATTTTCATTTTT
1 ATTTTAAATTTTCATTTTT
13778373 A-TTT-AATTTTCATTTTT
1 ATTTTAAATTTTCATTTTT
13778390 A
1 A
13778391 AAATTAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 14 0.41
18 17 0.50
19 3 0.09
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTAAATTTTCATTTTT
Found at i:13778389 original size:24 final size:24
Alignment explanation
Indices: 13778334--13778382 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
13778324 TATCTCTTTA
*
13778334 AAATTTTAAATTTTCATATAATTTT
1 AAATTTT-CATTTTCATATAATTTT
* *
13778359 AAATTTTCATTTTTATTTAATTTT
1 AAATTTTCATTTTCATATAATTTT
13778383 CATTTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (24 bp):
AAATTTTCATTTTCATATAATTTT
Found at i:13778403 original size:16 final size:16
Alignment explanation
Indices: 13778384--13778423 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
13778374 TTTAATTTTC
13778384 ATTTTTAAAATTAATT
1 ATTTTTAAAATTAATT
13778400 A-TTTTAAAATTAATT
1 ATTTTTAAAATTAATT
*
13778415 TTTTTTAAA
1 ATTTTTAAA
13778424 TTTTTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTTTAAAATTAATT
Found at i:13781917 original size:64 final size:62
Alignment explanation
Indices: 13781841--13782001 Score: 169
Period size: 64 Copynumber: 2.5 Consensus size: 62
13781831 ATTGTTCAGT
* * *
13781841 GTGCATCGATGCACAGGAAGTGCATCGATGCACACATTAAAAATGGAAACATCGAATGCAATTA
1 GTGCATCGATGCAAAGG-AGTGCATCGATGCACACATT-AAAATGAAAACATCGAAGGCAATTA
* * * ** *
13781905 GTGCATCAATGCATAAGGAGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGATTT
1 GTGCATCGATGCA-AAGGAGTGCATCGATGCA-CACATTAAAATGAAAACATCGAAGGCAATTA
* **
13781969 GTGTATCGATGCATGGGTAGTGCATCGATGCAC
1 GTGCATCGATGCAAAGG-AGTGCATCGATGCAC
13782002 TTCAAGGGAA
Statistics
Matches: 81, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
63 3 0.04
64 71 0.88
65 7 0.09
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (62 bp):
GTGCATCGATGCAAAGGAGTGCATCGATGCACACATTAAAATGAAAACATCGAAGGCAATTA
Found at i:13783384 original size:22 final size:22
Alignment explanation
Indices: 13783343--13783395 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
13783333 TGATTCAACT
* *
13783343 TATGTGACATAATCTACGTG-C
1 TATGTGAAATAAACTACGTGTC
*
13783364 TATGTGAAAGTAAACTACGTGTT
1 TATGTGAAA-TAAACTACGTGTC
13783387 TATGTGAAA
1 TATGTGAAA
13783396 ATGTGAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 8 0.30
22 10 0.37
23 9 0.33
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (22 bp):
TATGTGAAATAAACTACGTGTC
Found at i:13783644 original size:23 final size:23
Alignment explanation
Indices: 13783610--13783701 Score: 112
Period size: 23 Copynumber: 4.0 Consensus size: 23
13783600 CAACTTTATC
*
13783610 TGGCACTTCGGTGCATTTCTACG
1 TGGCACTACGGTGCATTTCTACG
*
13783633 CGGCACTACGGTGCATTTCTACG
1 TGGCACTACGGTGCATTTCTACG
* * *
13783656 TGGTACTATGGTGCAATTCTACG
1 TGGCACTACGGTGCATTTCTACG
** *
13783679 TGGCACTTTGGTGCATTTATACG
1 TGGCACTACGGTGCATTTCTACG
13783702 AGCTGTGGTG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.17, C:0.23, G:0.26, T:0.34
Consensus pattern (23 bp):
TGGCACTACGGTGCATTTCTACG
Found at i:13787208 original size:64 final size:65
Alignment explanation
Indices: 13787101--13787261 Score: 168
Period size: 64 Copynumber: 2.5 Consensus size: 65
13787091 ATTGTTCAGT
* * * *
13787101 GTGCATCGATGCACAGGAAGTGCATTGATGCA-CATATTAAAAATGAAAACATC-AAATTCAATT
1 GTGCATCGATGCATAGGAAGTGCATCGATGCACCACATTAAAAATGAAAACATCGAAAGT-AATT
13787164 A
65 A
* * * *
13787165 GTGCATCGATGCATAAGG-AGTGCATCGATGCACCCCCTT-AAAATGAAAACATCGAAGGTGATT
1 GTGCATCGATGCAT-AGGAAGTGCATCGATGCACCACATTAAAAATGAAAACATCGAAAGTAATT
*
13787228 T
65 A
* * *
13787229 GTGTATCGATGCATGGGTAGTGCATCGATGCAC
1 GTGCATCGATGCATAGGAAGTGCATCGATGCAC
13787262 TTCAAGGGAA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
63 2 0.02
64 71 0.87
65 9 0.11
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (65 bp):
GTGCATCGATGCATAGGAAGTGCATCGATGCACCACATTAAAAATGAAAACATCGAAAGTAATTA
Found at i:13787701 original size:20 final size:21
Alignment explanation
Indices: 13787665--13787710 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
13787655 TGATATAAAC
*
13787665 TATATGATATGATAAGA-AAT
1 TATATGATATGAAAAGAGAAT
13787685 TATATGAATAT-AAAAGAGAAT
1 TATATG-ATATGAAAAGAGAAT
13787706 T-TATG
1 TATATG
13787711 TGATAAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (21 bp):
TATATGATATGAAAAGAGAAT
Found at i:13788386 original size:2 final size:2
Alignment explanation
Indices: 13788379--13788405 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13788369 AGGAAAAATG
13788379 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
13788406 GGAAGATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13788908 original size:23 final size:23
Alignment explanation
Indices: 13788873--13789009 Score: 184
Period size: 23 Copynumber: 6.0 Consensus size: 23
13788863 AACTTTATAT
*
13788873 GGCACTTCGGTGCATTTCTACGC
1 GGCACTACGGTGCATTTCTACGC
*
13788896 GGCACTACAGTGCATTTCTACGC
1 GGCACTACGGTGCATTTCTACGC
*
13788919 GGCACTACGGTGCATTTCTACAC
1 GGCACTACGGTGCATTTCTACGC
*
13788942 AGCACTACGGTGCATTTCTACGC
1 GGCACTACGGTGCATTTCTACGC
* * * *
13788965 AGCACTATGGTGCAATTCTACGT
1 GGCACTACGGTGCATTTCTACGC
* *
13788988 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCATTTCTACG
13789010 AGCTGTGGTG
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 100 1.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (23 bp):
GGCACTACGGTGCATTTCTACGC
Found at i:13795594 original size:36 final size:36
Alignment explanation
Indices: 13795547--13795903 Score: 540
Period size: 36 Copynumber: 10.0 Consensus size: 36
13795537 TCAAGAAGGT
* * *
13795547 CCAGAGTATTGCTGACCTCCTCCCATCTGTGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
* * *
13795583 CCAGACTATTGCTG---TCCTCCGATCTGTGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
* *
13795616 CCAGAATATTGCTGTCCTCCTCCCATCTGTGGATAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
13795652 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
* *
13795688 CCAGAATATTGCTGTCCTCCTCCCATCTGTGGATAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
13795724 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
**
13795760 CCAGAATGCTGATGTCCTCCTCCCATCTGTGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
** *
13795796 CCAGAATGCTGATGTCCTCCTCCAATCTGTGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
*
13795832 CCAGAATATTGATGTCCTCCTCCCATCTGTGAAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
*
13795868 CCAGAATATTGATGTCCTCCTCCCATCTGAGGAGAA
1 CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
13795904 ACTGATGGCT
Statistics
Matches: 298, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
33 31 0.10
36 267 0.90
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (36 bp):
CCAGAATATTGATGTCCTCCTCCCATCTGTGGAGAA
Found at i:13798047 original size:17 final size:16
Alignment explanation
Indices: 13798019--13798056 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
13798009 TAATTTACAA
13798019 TTAATTTAAATAATAT
1 TTAATTTAAATAATAT
13798035 TTAATTATAAATAATAT
1 TTAATT-TAAATAATAT
13798052 TTAAT
1 TTAAT
13798057 CAATTTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAATTTAAATAATAT
Found at i:13798462 original size:21 final size:21
Alignment explanation
Indices: 13798423--13798463 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13798413 CGGTAAAAAT
* * *
13798423 TACCTAAAATATTATTATTTC
1 TACCTAAAACATCAATATTTC
13798444 TACCTAAAACATCAATATTT
1 TACCTAAAACATCAATATTT
13798464 TTAAATATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (21 bp):
TACCTAAAACATCAATATTTC
Found at i:13798758 original size:30 final size:31
Alignment explanation
Indices: 13798700--13798761 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 31
13798690 TATGCACAAT
13798700 AATAACAAAACCGGTACCACTTTTTTTTAGCC
1 AATAACAAAACCGGTACCAC-TTTTTTTAGCC
**
13798732 AATAACAAAATTGGTACCAC-TTTTTTAGCC
1 AATAACAAAACCGGTACCACTTTTTTTAGCC
13798762 TTATATTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 10 0.36
32 18 0.64
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (31 bp):
AATAACAAAACCGGTACCACTTTTTTTAGCC
Found at i:13801733 original size:24 final size:20
Alignment explanation
Indices: 13801688--13801765 Score: 61
Period size: 20 Copynumber: 3.8 Consensus size: 20
13801678 AAGGTGATAT
*
13801688 GTGTATCGATGCA-TG-GGTA
1 GTGTATCGATGCACTGTAG-A
13801707 GTGTATCGATGCACATGTTAAAGA
1 GTGTATCGATGCAC-TG-T--AGA
* *
13801731 GTGCATCGATACACTGTAGA
1 GTGTATCGATGCACTGTAGA
*
13801751 ATGTATCGATGCACT
1 GTGTATCGATGCACT
13801766 TCAAGGGTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
19 13 0.28
20 15 0.32
21 2 0.04
22 1 0.02
23 2 0.04
24 13 0.28
25 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (20 bp):
GTGTATCGATGCACTGTAGA
Found at i:13804186 original size:23 final size:23
Alignment explanation
Indices: 13804160--13804228 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
13804150 CACCACAGCT
* *
13804160 CGTATAAATACACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
13804183 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
*
13804206 CGTAGAAATGCACCAAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
13804229 TATAAGGTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:13805874 original size:24 final size:20
Alignment explanation
Indices: 13805821--13805878 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
13805811 TTCCCCTTGA
*
13805821 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
13805841 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
13805864 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
13805879 CTACCCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:13805955 original size:19 final size:19
Alignment explanation
Indices: 13805931--13806001 Score: 133
Period size: 19 Copynumber: 3.7 Consensus size: 19
13805921 TTTAAGGGGG
*
13805931 TGCATCGATGCATTCTTTA
1 TGCATCGATGCACTCTTTA
13805950 TGCATCGATGCACTCTTTA
1 TGCATCGATGCACTCTTTA
13805969 TGCATCGATGCACTCTTTA
1 TGCATCGATGCACTCTTTA
13805988 TGCATCGATGCACT
1 TGCATCGATGCACT
13806002 AATTGCATTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (19 bp):
TGCATCGATGCACTCTTTA
Found at i:13806013 original size:102 final size:105
Alignment explanation
Indices: 13805822--13806018 Score: 231
Period size: 102 Copynumber: 1.9 Consensus size: 105
13805812 TCCCCTTGAA
*
13805822 GTGCATCGATACATTCTACAGTGCATCGATGCATTCTTTAACATGTGCATCGATGCACTACCCAT
1 GTGCATCGATACATTCTACAGTGCATCGATGCACTCTTT-A-A-GTGCATCGATGCACTACCCAT
*
13805887 GCATCGATACACAAATCACCTTCGATGTTTTTATTTTAAGGGG
63 GCATCGATACACAAATCACATTCGATGTTTTTATTTTAAGGGG
* ** **
13805930 GTGCATCGATGCATTCTTTA-TGCATCGATGCACTCTTT-A-TGCATCGATGCACT-CTTTATGC
1 GTGCATCGATACATTCTACAGTGCATCGATGCACTCTTTAAGTGCATCGATGCACTAC-CCATGC
* * **
13805991 ATCGATGCACTAATTGCATTCGATGTTT
65 ATCGATACACAAATCACATTCGATGTTT
13806019 CCATTTTTTA
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
101 1 0.01
102 41 0.53
104 1 0.01
107 17 0.22
108 17 0.22
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (105 bp):
GTGCATCGATACATTCTACAGTGCATCGATGCACTCTTTAAGTGCATCGATGCACTACCCATGCA
TCGATACACAAATCACATTCGATGTTTTTATTTTAAGGGG
Found at i:13806433 original size:25 final size:26
Alignment explanation
Indices: 13806388--13806438 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
13806378 AACCTTTTTA
13806388 TAATAAAAGTTCATTTATAAA-CTCT
1 TAATAAAAGTTCATTTATAAATCTCT
* *
13806413 TAATAGAAA-TTCCTTTCTAAATCTCT
1 TAATA-AAAGTTCATTTATAAATCTCT
13806439 CTTCTTGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (26 bp):
TAATAAAAGTTCATTTATAAATCTCT
Found at i:13808172 original size:6 final size:6
Alignment explanation
Indices: 13808161--13808185 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13808151 GGACAAGAGT
13808161 ATATGA ATATGA ATATGA ATATGA A
1 ATATGA ATATGA ATATGA ATATGA A
13808186 AGGAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (6 bp):
ATATGA
Found at i:13809717 original size:24 final size:20
Alignment explanation
Indices: 13809690--13809749 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
13809680 AATCATGGGT
13809690 AGTGTATCGATGCACATGTTAAAG
1 AGTGTATCGATGCAC-TG-T--AG
* *
13809714 AGTGCATCGATACACTGTAG
1 AGTGTATCGATGCACTGTAG
*
13809734 AATGTATCGATGCACT
1 AGTGTATCGATGCACT
13809750 TCAGGGGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 15 0.48
22 1 0.03
23 2 0.06
24 13 0.42
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (20 bp):
AGTGTATCGATGCACTGTAG
Found at i:13810405 original size:25 final size:23
Alignment explanation
Indices: 13810361--13810410 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
13810351 CGAGACATAC
*
13810361 AGTGATCCTTCGGGATATTTCAT
1 AGTGATCCTTCGGGAAATTTCAT
*
13810384 AGTGGTCCTTCGGGACAAATTTCAT
1 AGTGATCCTTCGGG--AAATTTCAT
13810409 AG
1 AG
13810411 CCCCTAGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 13 0.57
25 10 0.43
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (23 bp):
AGTGATCCTTCGGGAAATTTCAT
Found at i:13810882 original size:2 final size:2
Alignment explanation
Indices: 13810875--13810902 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13810865 CAAATAGGGA
13810875 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13810903 TGTATAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13811244 original size:21 final size:21
Alignment explanation
Indices: 13811218--13811261 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
13811208 TATATGACTA
13811218 AGAATTATGAAAAATGGAATG
1 AGAATTATGAAAAATGGAATG
13811239 AGAATTATGAAAAATGGAATG
1 AGAATTATGAAAAATGGAATG
13811260 AG
1 AG
13811262 TTAAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23
Consensus pattern (21 bp):
AGAATTATGAAAAATGGAATG
Found at i:13814947 original size:24 final size:24
Alignment explanation
Indices: 13814915--13815023 Score: 155
Period size: 24 Copynumber: 4.5 Consensus size: 24
13814905 GAGTGTTTTA
*
13814915 TCTGATTTCTGATTTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
13814939 TCTGATTTCTAATCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* * *
13814963 TCTGATTTCTGATATGGATTCTAT
1 TCTGATTTCTGATCTGAATTCTGT
*
13814987 TCTGATTTCTGATCTAAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
13815011 TTTGATTTCTGAT
1 TCTGATTTCTGAT
13815024 ATATCTGTTT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.52
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:13814948 original size:12 final size:12
Alignment explanation
Indices: 13814915--13815021 Score: 83
Period size: 12 Copynumber: 8.9 Consensus size: 12
13814905 GAGTGTTTTA
13814915 TCTGATTTCTGAT
1 TCTGATTTCTG-T
*
13814928 T-TGAATTCTGT
1 TCTGATTTCTGT
**
13814939 TCTGATTTCTAA
1 TCTGATTTCTGT
*
13814951 TCTGAATTCTGT
1 TCTGATTTCTGT
*
13814963 TCTGATTTCTGA
1 TCTGATTTCTGT
* *
13814975 TATGGA-TTCTAT
1 TCT-GATTTCTGT
*
13814987 TCTGATTTCTGA
1 TCTGATTTCTGT
* *
13814999 TCTAAATTCTGT
1 TCTGATTTCTGT
*
13815011 TTTGATTTCTG
1 TCTGATTTCTG
13815022 ATATATCTGT
Statistics
Matches: 70, Mismatches: 21, Indels: 7
0.71 0.21 0.07
Matches are distributed among these distances:
11 4 0.06
12 63 0.90
13 3 0.04
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.52
Consensus pattern (12 bp):
TCTGATTTCTGT
Found at i:13817214 original size:15 final size:16
Alignment explanation
Indices: 13817194--13817223 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13817184 GACTTTGATC
13817194 GAAAAGTCA-ATTTTT
1 GAAAAGTCATATTTTT
13817209 GAAAAGTCATATTTT
1 GAAAAGTCATATTTT
13817224 ATGTTTTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (16 bp):
GAAAAGTCATATTTTT
Found at i:13819493 original size:24 final size:24
Alignment explanation
Indices: 13819461--13819533 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
13819451 CACATGAGTA
*
13819461 TTTTATCTGATTTCTGATTTGAAT
1 TTTTTTCTGATTTCTGATTTGAAT
*
13819485 TTTTTTCTGATTTCTTATTTGAAT
1 TTTTTTCTGATTTCTGATTTGAAT
* * * *
13819509 TCTGTTCTAATTTCTGATCTGAAT
1 TTTTTTCTGATTTCTGATTTGAAT
13819533 T
1 T
13819534 CTATTATGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59
Consensus pattern (24 bp):
TTTTTTCTGATTTCTGATTTGAAT
Found at i:13819535 original size:12 final size:12
Alignment explanation
Indices: 13819465--13819571 Score: 56
Period size: 12 Copynumber: 8.9 Consensus size: 12
13819455 TGAGTATTTT
*
13819465 ATCTGATTTCTG
1 ATCTGAATTCTG
* * *
13819477 ATTTGAATTTTT
1 ATCTGAATTCTG
* * *
13819489 TTCTGATTTCTT
1 ATCTGAATTCTG
*
13819501 ATTTGAATTCTG
1 ATCTGAATTCTG
*
13819513 TTCT-AATTTCTG
1 ATCTGAA-TTCTG
13819525 ATCTGAATTCT-
1 ATCTGAATTCTG
* *
13819536 ATTATGAATTATG
1 A-TCTGAATTCTG
* *
13819549 TTCTGATTTCTG
1 ATCTGAATTCTG
*
13819561 ATCTGGATTCT
1 ATCTGAATTCT
13819572 ATTTTGATAT
Statistics
Matches: 67, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
11 3 0.04
12 62 0.93
13 2 0.03
ACGTcount: A:0.21, C:0.12, G:0.13, T:0.54
Consensus pattern (12 bp):
ATCTGAATTCTG
Found at i:13819579 original size:24 final size:24
Alignment explanation
Indices: 13819552--13819610 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
13819542 AATTATGTTC
*
13819552 TGATTTCTGATCTGGATTCTATTT
1 TGATTTCTGATCTGAATTCTATTT
* * * *
13819576 TGATATCTGGTCTGAATTTTGTTT
1 TGATTTCTGATCTGAATTCTATTT
13819600 TGATTTCTGAT
1 TGATTTCTGAT
13819611 ATCTCCATTT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.17, C:0.10, G:0.19, T:0.54
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTCTATTT
Found at i:13819590 original size:36 final size:36
Alignment explanation
Indices: 13819490--13819574 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 36
13819480 TGAATTTTTT
* *
13819490 TCTGATTTCTTATT-TGAATTCTGTTCTAATTTCTGA
1 TCTGAATTC-TATTATGAATTCTGTTCTGATTTCTGA
*
13819526 TCTGAATTCTATTATGAATTATGTTCTGATTTCTGA
1 TCTGAATTCTATTATGAATTCTGTTCTGATTTCTGA
*
13819562 TCTGGATTCTATT
1 TCTGAATTCTATT
13819575 TTGATATCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 4 0.09
36 40 0.91
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.53
Consensus pattern (36 bp):
TCTGAATTCTATTATGAATTCTGTTCTGATTTCTGA
Found at i:13819590 original size:60 final size:60
Alignment explanation
Indices: 13819465--13819602 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 60
13819455 TGAGTATTTT
* * * * * * *
13819465 ATCTGATTTCTGATTTGAATTTTTTTCTGATTTCTTATTTGAATTCTGTTCTAATTTCTG
1 ATCTGAATTCTGATTTGAATTATGTTCTGATTTCTGATCTGAATTCTATTCTAATATCTG
* * *
13819525 ATCTGAATTCT-ATTATGAATTATGTTCTGATTTCTGATCTGGATTCTATTTTGATATCTG
1 ATCTGAATTCTGATT-TGAATTATGTTCTGATTTCTGATCTGAATTCTATTCTAATATCTG
* * *
13819585 GTCTGAATTTTGTTTTGA
1 ATCTGAATTCTGATTTGA
13819603 TTTCTGATAT
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
59 3 0.05
60 58 0.92
61 2 0.03
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (60 bp):
ATCTGAATTCTGATTTGAATTATGTTCTGATTTCTGATCTGAATTCTATTCTAATATCTG
Found at i:13824920 original size:18 final size:19
Alignment explanation
Indices: 13824897--13824932 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
13824887 AAACAGGTGG
13824897 CTTTATGGTAAGT-TTTTC
1 CTTTATGGTAAGTATTTTC
*
13824915 CTTTATGTTAAGTATTTT
1 CTTTATGGTAAGTATTTT
13824933 GGTAGCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.19, C:0.08, G:0.14, T:0.58
Consensus pattern (19 bp):
CTTTATGGTAAGTATTTTC
Found at i:13828599 original size:23 final size:23
Alignment explanation
Indices: 13828573--13828620 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
13828563 ATAAAGTACA
*
13828573 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
13828596 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
13828619 AT
1 AT
13828621 TGACATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:13831797 original size:183 final size:183
Alignment explanation
Indices: 13831485--13832785 Score: 2193
Period size: 183 Copynumber: 7.1 Consensus size: 183
13831475 CTTAAAATTA
*
13831485 CCGACACAATATTAAAACGTGTCGATATAGGTTGTAAGACCTATTCGCTCATAAAACCGGTATAT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGT-AGACCTATTCGCTCATAAAACCGGTATAT
* *
13831550 TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATTTGTAAATGTC
65 TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTC
*
13831615 GACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
130 GACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
* *
13831669 CCAACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
13831734 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
66 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
*
13831799 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
131 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
* *
13831852 CCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACATATTCGCTCATAAAACCGGTATATT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
* * *
13831917 TATATCGGTTATATTACAAAATTATCTATTATATTATAATTCTGGGTTCCGATTTGTAAATGTCG
66 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
* * * *
13831982 ACAC-TTTTTGACT-GTATCGACACA-TTTTCTTCCAATATGGACAT-AAGTA
131 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
* *
13832031 CCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAATCGGTATATT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
* * * *
13832096 TATACAGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATATGTAAATGTCT
66 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
13832161 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
131 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
*
13832214 CCGACACAATATTAAAAAGTGTCGATATAGGTTATAGACCTATTCGCTCATAAAACCGGTATATT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
*
13832279 TATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCG
66 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
* *
13832344 ACATTTTTTTAAATGGTATCGACACATTTTTCTTCAAATCTGGACATAAAGTT
131 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
* *
13832397 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACCCATAAAACCGGTATATT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
13832462 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
66 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
13832527 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
131 ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
13832580 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
1 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
* * * *
13832645 TATACCGGTTATATTATAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTTTTTTCAA--
66 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATG---TGTAAATG
* *
13832708 TCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTA
128 TCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
*
13832764 CAGACACAATATTAAAAAGTGT
1 CCGACACAATATTAAAAAGTGT
13832786 GAAAACTTTG
Statistics
Matches: 1059, Mismatches: 50, Indels: 16
0.94 0.04 0.01
Matches are distributed among these distances:
179 131 0.12
180 26 0.02
181 22 0.02
182 29 0.03
183 740 0.70
184 107 0.10
186 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (183 bp):
CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCG
ACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
Found at i:13833990 original size:9 final size:9
Alignment explanation
Indices: 13833976--13834053 Score: 75
Period size: 9 Copynumber: 8.7 Consensus size: 9
13833966 ACTTGTTTGG
13833976 ATCATCATC
1 ATCATCATC
13833985 ATCATCATC
1 ATCATCATC
13833994 ATCATCATC
1 ATCATCATC
*
13834003 GTCATCATC
1 ATCATCATC
* *
13834012 TTCATCGTC
1 ATCATCATC
* *
13834021 AGCTTCATC
1 ATCATCATC
* *
13834030 GTCGTCATC
1 ATCATCATC
*
13834039 ATCGTCATC
1 ATCATCATC
*
13834048 TTCATC
1 ATCATC
13834054 GTCAGCTTCA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (9 bp):
ATCATCATC
Found at i:13834029 original size:36 final size:36
Alignment explanation
Indices: 13833989--13834070 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 36
13833979 ATCATCATCA
*
13833989 TCATCATCATCATCGTCATCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
* * *
13834025 TCATCGTCGTCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
*
13834061 TCATCTTCAT
1 TCATCATCAT
13834071 TGACCGCTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.20, C:0.33, G:0.10, T:0.38
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGTCAGCT
Found at i:13834054 original size:12 final size:12
Alignment explanation
Indices: 13833977--13834070 Score: 89
Period size: 12 Copynumber: 7.8 Consensus size: 12
13833967 CTTGTTTGGA
* *
13833977 TCATCATCATCA
1 TCATCGTCATCT
* *
13833989 TCATCATCATCA
1 TCATCGTCATCT
* *
13834001 TCGTCATCATCT
1 TCATCGTCATCT
*
13834013 TCATCGTCAGCT
1 TCATCGTCATCT
* *
13834025 TCATCGTCGTCA
1 TCATCGTCATCT
13834037 TCATCGTCATCT
1 TCATCGTCATCT
*
13834049 TCATCGTCAGCT
1 TCATCGTCATCT
*
13834061 TCATCTTCAT
1 TCATCGTCAT
13834071 TGACCGCTTG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 69 1.00
ACGTcount: A:0.21, C:0.33, G:0.09, T:0.37
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:13834070 original size:6 final size:6
Alignment explanation
Indices: 13833976--13834053 Score: 75
Period size: 6 Copynumber: 13.0 Consensus size: 6
13833966 ACTTGTTTGG
* * * *
13833976 ATCATC ATCATC ATCATC ATCATC ATCGTC ATCATC TTCATC GTCAGC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC
* * * * *
13834024 TTCATC GTCGTC ATCATC GTCATC TTCATC
1 ATCATC ATCATC ATCATC ATCATC ATCATC
13834054 GTCAGCTTCA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (6 bp):
ATCATC
Found at i:13834079 original size:18 final size:18
Alignment explanation
Indices: 13834007--13834070 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
13833997 ATCATCGTCA
*
13834007 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGACAGCT
* * * *
13834025 TCATCGTCGTC-ATCATCG
1 TCATCTTCATCGA-CAGCT
*
13834043 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGACAGCT
13834061 TCATCTTCAT
1 TCATCTTCAT
13834071 TGACCGCTTG
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.17, C:0.33, G:0.11, T:0.39
Consensus pattern (18 bp):
TCATCTTCATCGACAGCT
Found at i:13835877 original size:200 final size:200
Alignment explanation
Indices: 13835558--13836490 Score: 1733
Period size: 200 Copynumber: 4.7 Consensus size: 200
13835548 TTATATACCA
*
13835558 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTGTACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* *
13835623 TTGGTTTTCGATGTTTTTGGGATCGACACTTTCTATATATGGATCGACACTTTATGGTTGCACCA
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
* *
13835688 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAACAAGTGTCGACAAATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
13835753 GACAT
196 GACAT
13835758 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
*
13835823 TTGGTTTTTGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
13835888 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
*
13835953 GAAAT
196 GACAT
13835958 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
13836023 TTGGTTTTCGAT-TTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
13836087 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
13836152 GACAT
196 GACAT
*
13836157 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* *
13836222 TTTGTTTTCGATGTTTTTGGGATCAACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
*
13836287 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTAGTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
13836352 GACAT
196 GACAT
13836357 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* * *
13836422 TTGGTTTTCAAAGTTTTTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
13836487 TGTT
131 TGTT
13836491 GGCCATATTG
Statistics
Matches: 713, Mismatches: 19, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
199 196 0.27
200 517 0.73
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (200 bp):
ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
GACAT
Found at i:13836273 original size:399 final size:399
Alignment explanation
Indices: 13835558--13836490 Score: 1722
Period size: 399 Copynumber: 2.3 Consensus size: 399
13835548 TTATATACCA
*
13835558 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTGTACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* *
13835623 TTGGTTTTCGATGTTTTTGGGATCGACACTTTCTATATATGGATCGACACTTTATGGTTGCACCA
66 TTGGTTTTCGAT-TTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
*
13835688 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAACAAGTGTCGACAAATTATTTA
130 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTA
*
13835753 GACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTA
195 GACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACATATTACATTA
* *
13835818 TACTTTTGGTTTTTGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTG
260 TACTTTTGGTTTTCGATGTTTTTGGGATCAACACTTTTTATATATGGATCGACACTTTATGGTTG
13835883 CACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATT
325 CACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATT
*
13835948 ATTTAGAAAT
390 AGTTAGAAAT
13835958 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
13836023 TTGGTTTTCGATTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
66 TTGGTTTTCGATTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
*
13836088 GTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAG
131 GTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAG
13836153 ACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACATATTACATTAT
196 ACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACATATTACATTAT
*
13836218 ACTTTTTGTTTTCGATGTTTTTGGGATCAACACTTTTTATATATGGATCGACACTTTATGGTTGC
261 ACTTTTGGTTTTCGATGTTTTTGGGATCAACACTTTTTATATATGGATCGACACTTTATGGTTGC
13836283 ACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTA
326 ACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTA
*
13836348 GTTAGACAT
391 GTTAGAAAT
13836357 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* * *
13836422 TTGGTTTTCAAAGTTTTTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCC
66 TTGGTTTTC-GATTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
13836487 TGTT
130 TGTT
13836491 GGCCATATTG
Statistics
Matches: 518, Mismatches: 14, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
399 386 0.75
400 132 0.25
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (399 bp):
ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
TTGGTTTTCGATTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
GTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAG
ACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACATATTACATTAT
ACTTTTGGTTTTCGATGTTTTTGGGATCAACACTTTTTATATATGGATCGACACTTTATGGTTGC
ACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTA
GTTAGAAAT
Found at i:13836637 original size:19 final size:19
Alignment explanation
Indices: 13836613--13836657 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
13836603 ATTCACATAT
13836613 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
13836632 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
13836651 AAAATTA
1 AAAATTA
13836658 ACCTTACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:13838491 original size:33 final size:33
Alignment explanation
Indices: 13838454--13838519 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
13838444 CATCTTAATA
*
13838454 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
13838487 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
13838520 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:13838578 original size:21 final size:21
Alignment explanation
Indices: 13838553--13838617 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
13838543 CCCCTTATGC
* *
13838553 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
13838574 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
13838595 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
13838616 CT
1 CT
13838618 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:13840660 original size:24 final size:24
Alignment explanation
Indices: 13840623--13840675 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
13840613 CCGTTCTATC
13840623 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
13840647 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
13840671 TATTT
1 TATTT
13840676 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:13840866 original size:20 final size:19
Alignment explanation
Indices: 13840820--13840875 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
13840810 TCCGGTATCA
*
13840820 TTTTACCGGTTTTAT-CAT
1 TTTTACCTGTTTTATCCAT
13840838 TTTGATACCTGTTTTATCCTAT
1 TTT--TACCTGTTTTATCC-AT
*
13840860 TTTTACCTGTTATATC
1 TTTTACCTGTTTTATC
13840876 GTTGTGGATC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 3 0.09
20 23 0.72
21 1 0.03
22 5 0.16
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCTGTTTTATCCAT
Found at i:13841028 original size:20 final size:20
Alignment explanation
Indices: 13841001--13841047 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
13840991 TCCGGTAAAG
13841001 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
13841020 TTCTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
13841041 TTTTACC
1 TTTTACC
13841048 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.19, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:13841091 original size:181 final size:182
Alignment explanation
Indices: 13840787--13841259 Score: 684
Period size: 181 Copynumber: 2.6 Consensus size: 182
13840777 CGTACTTACG
* * *
13840787 AAAGTATCGACACTTTCAATATATCCGGTATCA-TTTTACCGGTTTTATCATTTTGATACCTGTT
1 AAAGTATCGACACTTTCAATATATCCGGTA-AAGTTTTACCGGTTTTATCATTTTCATACCGGTT
* * *
13840851 TTATCCTATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTA
65 TTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTTAAAAGTATCGACACATTA
13840916 TAGG-CGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
130 TAGGAC-CTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
*
13840968 AAAGTATCGACACTTTCAATATATCCGGTAAAGTTTTACCGGTTTTATCATTTTCTTACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAAAGTTTTACCGGTTTTATCATTTTCATACCGGTTT
* * *
13841033 TATCATATTTTTACCTGGTATATCGTTGTAGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
* *
13841098 AGGACTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 AGGACCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * ** * *
13841150 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCA-TTTCAATACTGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAAAGTTTTACCGGTTTTATCATTTTC-ATACCGGTT
* * * *
13841214 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
65 TTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTT
13841260 AATTTGGATC
Statistics
Matches: 262, Mismatches: 26, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
180 1 0.00
181 168 0.64
182 93 0.35
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.42
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAAAGTTTTACCGGTTTTATCATTTTCATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGACCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:13843652 original size:97 final size:98
Alignment explanation
Indices: 13843526--13843729 Score: 277
Period size: 99 Copynumber: 2.1 Consensus size: 98
13843516 AGACTCGGGA
* * * * *
13843526 GGTATGGCATAACACCAATTGAAGACTTCCTC-GTGTAACACAACAGGTGTCAGCATGTTGAAAA
1 GGTATGACATAAAACCAATTAAAGACTTCCTCAGTGTAACACAACAGGTGCCAGCATGTAGAAAA
13843590 CCTCATACAGGGTACTAATAGAAC-AGAACCTAC
66 CCTCATACAGGGTA-TAATAGAACAAGAACCTAC
* **
13843623 GGTATGACATAAAACCATTTAAAGACTTCCTCATGTGTAGGACAACAGGTGCCAGCATGTAGAAA
1 GGTATGACATAAAACCAATTAAAGACTTCCTCA-GTGTAACACAACAGGTGCCAGCATGTAGAAA
*
13843688 ACCTCATACAGGGTATTATAGAACTGAAGAACCTAC
65 ACCTCATACAGGGTATAATAGAAC--AAGAACCTAC
13843724 GGTATG
1 GGTATG
13843730 TTAAGTATCC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
97 28 0.30
98 8 0.09
99 42 0.45
101 15 0.16
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (98 bp):
GGTATGACATAAAACCAATTAAAGACTTCCTCAGTGTAACACAACAGGTGCCAGCATGTAGAAAA
CCTCATACAGGGTATAATAGAACAAGAACCTAC
Found at i:13872106 original size:828 final size:828
Alignment explanation
Indices: 13870510--13872171 Score: 3083
Period size: 828 Copynumber: 2.0 Consensus size: 828
13870500 GGGACTTCCC
13870510 CTCGGTGCTAAGAAGAATTCAGAAGTCTTATGGGATCCAGTCTTTAAGAACTTCAATTCCAAACT
1 CTCGGTGCTAAGAAGAATTCAGAAGTCTTATGGGATCCAGTCTTTAAGAACTTCAATTCCAAACT
* **
13870575 TGTCGGGTGGAAAACTTCTTGTCTTTCTTTGGCTGGCAGGACAGTCCTATAAAGTTTGTGTTATC
66 TGTCGGGTGGAAAACTTCTTGTCTTTCTTTGGCTGGCAGGACAGGCCTATAAAGTCGGTGTTATC
* *
13870640 TTCCTTGCCTATCTTTTTTCTATCATTTTTTCAAATGCCTTGCAAAATTGGTAAGAGGTTAAATT
131 TTCCTTGCCTATCTTTTTCCTATCATTTTTTAAAATGCCTTGCAAAATTGGTAAGAGGTTAAATT
13870705 CTTTGATGGCCAAATTTTTATGGGGTGATAATGCGGATAAGAGGCGGATTCACTGGGTGAATTGG
196 CTTTGATGGCCAAATTTTTATGGGGTGATAATGCGGATAAGAGGCGGATTCACTGGGTGAATTGG
*
13870770 AGTACAGTTTGCAGGCCTTTGAATTGTGGTGGCCTCGGTGTTCTTAACTTGAATCTTACCAGTCG
261 AGTACAGTTTGCAGGCCTTTGAATTGTGGTGGCCTCGGTGTTCTTAACTTGAATCTTACCAATCG
13870835 GGCTCTATTGGAAAAATGGGTGTGGAAGTTTGCCAATGAAAAGAATTCCGCATGGAAAAGAGTGT
326 GGCTCTATTGGAAAAATGGGTGTGGAAGTTTGCCAATGAAAAGAATTCCGCATGGAAAAGAGTGT
13870900 TATGTAGCAAGCAGAAGGTTAGTTGCAACACCATGTCTATTAGTAAGGTTATTTCTCCTCAATCT
391 TATGTAGCAAGCAGAAGGTTAGTTGCAACACCATGTCTATTAGTAAGGTTATTTCTCCTCAATCT
* *
13870965 TCTTGGATTTTGAGAGGTATTGTCAATAATTTCTTGAAGAGTGATTCGGAGAGAGAATGTCTTGA
456 TCTTGGATTTTGAGAGATATTGCCAATAATTTCTTGAAGAGTGATTCGGAGAGAGAATGTCTTGA
*
13871030 CCAAATTCGAAGTTGCAAGTGGGTAATGGAAAGTCCATTTCTTTTTGGATTAATGCATGGGTGGA
521 CCAAATTCGAAGTTGCAAGTGGGTAATGGAAAGTCCATTTCTTTTTGGATTAATGCATAGGTGGA
*
13871095 TGAGTCTCCTTTAAAAAATCTTTTCCATAGAATCTTTGCGCTTTCTCCTAGCAAATGGGGCAAGG
586 TGAGTCTCCTTTAAAAAATCTTTTCCATAGAATCTTTGCGCTTTCTCCTAACAAATGGGGCAAGG
*
13871160 TTGCTGAGTTTGGCAGTTTTGAATCGAATTGTTCGGTGTGGAATATACAAACCAGGAGGAATTTG
651 TTGCTAAGTTTGGCAGTTTTGAATCGAATTGTTCGGTGTGGAATATACAAACCAGGAGGAATTTG
*
13871225 TGTTATTGGGAATTAGATCAATGGATGGATTTGATGTCAAAACTGAATGATATAAAATTAACATA
716 TGTGATTGGGAATTAGATCAATGGATGGATTTGATGTCAAAACTGAATGATATAAAATTAACATA
* * *
13871290 CTCAGTAGAAGATTTTCTTTCTTGGTCTGTAAGTGGTGATGAATTGTT
781 CTCAATAGAAGATTTTCTTTCTTGGTCTGCAAGTGGTGATGAACTGTT
13871338 CTCGGTGCTAAGAAGAATTCAGAAGTCTTATGGGATCCAGTCTTTAAGAACTTCAATTCCAAACT
1 CTCGGTGCTAAGAAGAATTCAGAAGTCTTATGGGATCCAGTCTTTAAGAACTTCAATTCCAAACT
*
13871403 TGTCGGGTGGAAAACTTCTTGTCTTTCTTTGGCTGGCAGGACAGGCCTATTAAGTCGGTGTTATC
66 TGTCGGGTGGAAAACTTCTTGTCTTTCTTTGGCTGGCAGGACAGGCCTATAAAGTCGGTGTTATC
13871468 TTCCTTGCCTATCTTTTTCCTATCATTTTTTAAAATGCCTTGCAAAATTGGTAAGAGGTTAAATT
131 TTCCTTGCCTATCTTTTTCCTATCATTTTTTAAAATGCCTTGCAAAATTGGTAAGAGGTTAAATT
13871533 CTTTGATGGCCAAATTTTTATGGGGTGATAATGCGGATAAGAGGCGGATTCACTGGGTGAATTGG
196 CTTTGATGGCCAAATTTTTATGGGGTGATAATGCGGATAAGAGGCGGATTCACTGGGTGAATTGG
*
13871598 AGTACAGTTTGCAGGCCTTTGAATTGTGGTGGCCTCGGTGTTCTTGACTTGAATCTTACCAATCG
261 AGTACAGTTTGCAGGCCTTTGAATTGTGGTGGCCTCGGTGTTCTTAACTTGAATCTTACCAATCG
**
13871663 GGCTCTATTGGAAAAATGGGTGTGGAAGTTTGCCAATG-AAAGAATTCCTTATGGAAAAGAGTGT
326 GGCTCTATTGGAAAAATGGGTGTGGAAGTTTGCCAATGAAAAGAATTCCGCATGGAAAAGAGTGT
13871727 TATGTAGCAAGCAGAAGGTTAGTTGCAACACCATGTCTATTAGTAAGGTTATTTCTCCTCAATCT
391 TATGTAGCAAGCAGAAGGTTAGTTGCAACACCATGTCTATTAGTAAGGTTATTTCTCCTCAATCT
*
13871792 TCTTGGATTTTGAGAGATATTGCCAATAATTTCTTGAAGAGTGATTCGGAGGGAGAATGTCTTAG
456 TCTTGGATTTTGAGAGATATTGCCAATAATTTCTTGAAGAGTGATTCGGAGAGAGAATGTCTT-G
*
13871857 ACCAAATTCGAAGTTGCAAGTGGGTAATGGAAAGTCCATTTCTTTTTGGATTGATGCATAGGTGG
520 ACCAAATTCGAAGTTGCAAGTGGGTAATGGAAAGTCCATTTCTTTTTGGATTAATGCATAGGTGG
*
13871922 ATGAGTCTCTTTTAAAAAATCTTTTCCATAGAATCTTTGCGCTTTCTCCTAACAAATGGGGCAAG
585 ATGAGTCTCCTTTAAAAAATCTTTTCCATAGAATCTTTGCGCTTTCTCCTAACAAATGGGGCAAG
*
13871987 GTTGCTAAGTTTGGCAGTTTTGAATCGAATTGTTGGGTGTGGAATATACAAACCAGGAGGAATTT
650 GTTGCTAAGTTTGGCAGTTTTGAATCGAATTGTTCGGTGTGGAATATACAAACCAGGAGGAATTT
*
13872052 GTGTGATTGGGAATTGGATCAATGGATGGATTTGATGTCAAAACTGAATGATATAAAATTAACAT
715 GTGTGATTGGGAATTAGATCAATGGATGGATTTGATGTCAAAACTGAATGATATAAAATTAACAT
*
13872117 ACTCAATAGAAGATTTTCTTTCTTGGTCTGCAAGTGGTGATGGACTGTT
780 ACTCAATAGAAGATTTTCTTTCTTGGTCTGCAAGTGGTGATGAACTGTT
13872166 CTCGGT
1 CTCGGT
13872172 CAAATCTTGC
Statistics
Matches: 808, Mismatches: 25, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
827 149 0.18
828 659 0.82
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.34
Consensus pattern (828 bp):
CTCGGTGCTAAGAAGAATTCAGAAGTCTTATGGGATCCAGTCTTTAAGAACTTCAATTCCAAACT
TGTCGGGTGGAAAACTTCTTGTCTTTCTTTGGCTGGCAGGACAGGCCTATAAAGTCGGTGTTATC
TTCCTTGCCTATCTTTTTCCTATCATTTTTTAAAATGCCTTGCAAAATTGGTAAGAGGTTAAATT
CTTTGATGGCCAAATTTTTATGGGGTGATAATGCGGATAAGAGGCGGATTCACTGGGTGAATTGG
AGTACAGTTTGCAGGCCTTTGAATTGTGGTGGCCTCGGTGTTCTTAACTTGAATCTTACCAATCG
GGCTCTATTGGAAAAATGGGTGTGGAAGTTTGCCAATGAAAAGAATTCCGCATGGAAAAGAGTGT
TATGTAGCAAGCAGAAGGTTAGTTGCAACACCATGTCTATTAGTAAGGTTATTTCTCCTCAATCT
TCTTGGATTTTGAGAGATATTGCCAATAATTTCTTGAAGAGTGATTCGGAGAGAGAATGTCTTGA
CCAAATTCGAAGTTGCAAGTGGGTAATGGAAAGTCCATTTCTTTTTGGATTAATGCATAGGTGGA
TGAGTCTCCTTTAAAAAATCTTTTCCATAGAATCTTTGCGCTTTCTCCTAACAAATGGGGCAAGG
TTGCTAAGTTTGGCAGTTTTGAATCGAATTGTTCGGTGTGGAATATACAAACCAGGAGGAATTTG
TGTGATTGGGAATTAGATCAATGGATGGATTTGATGTCAAAACTGAATGATATAAAATTAACATA
CTCAATAGAAGATTTTCTTTCTTGGTCTGCAAGTGGTGATGAACTGTT
Found at i:13875029 original size:284 final size:281
Alignment explanation
Indices: 13874522--13875087 Score: 1024
Period size: 284 Copynumber: 2.0 Consensus size: 281
13874512 AAGAACAACC
*
13874522 TGTAAGAATTGCTAATACTTTATGGAATAAACAACTTGCTTGTACTTTTTTTACTCCATCATCAT
1 TGTAAGAATTGCTAATACTTTATGGAATAAACAACTTGCTTGTACTTTTTTTACTCCATCACCAT
* *
13874587 GCAGTACATACTCAAATTGAATTCCAATTTTGTTAAAGCTTGATTAGTAAATATCTAAAGGCCTT
66 GCAGTACATACTCAAATTGAATTCCAATTTTGTTAAAACATGATTAGTAAATATCTAAAGGCCTT
*
13874652 GATTTAAATTTTATGACCCAGTCTTCAATTTAAGAAAATTATTGAGGAAATATCAATCAAAAACA
131 GATTTAAATTTTAAGACCCAGTCTTCAATTTAAGAAAATTATTGAGGAAATATCAATCAAAAACA
* *
13874717 CATCATAGCCATTAAGATCAACAAAATTATAACACAGCAAAGTCAAGAAAATTTATATGCACTGT
196 CATCATAGCCATTAAGATCAACAAAATTATAACACAGCAAAGTCAAGAAAATATATATGCACCGT
*
13874782 TATAACAGGCAAACCCTCAGA
261 CATAACAGGCAAACCCTCAGA
*
13874803 TGTAAGAATTGCTAATACTTTATGGAATAAACAACTTGCTTGTGCTTTTTTTACTCCATTAACAC
1 TGTAAGAATTGCTAATACTTTATGGAATAAACAACTTGCTTGTACTTTTTTTACTCCA-T--CAC
13874868 CATGCAGTACATACTCAAATTGAATTCCAATTTTGTTAAAACATGATTAGTAAATATCTAAAGGC
63 CATGCAGTACATACTCAAATTGAATTCCAATTTTGTTAAAACATGATTAGTAAATATCTAAAGGC
*
13874933 CTTGATTTAAATTTTAAGACCCAGTCTTCAATTTGAGAAAATTATTGAGGAAATATCAATCAAAA
128 CTTGATTTAAATTTTAAGACCCAGTCTTCAATTTAAGAAAATTATTGAGGAAATATCAATCAAAA
13874998 ACACATCATAGCCATTAAGATCAACAAAATTATAACACAGCAAAGTCAAGAAAATATATATGCAC
193 ACACATCATAGCCATTAAGATCAACAAAATTATAACACAGCAAAGTCAAGAAAATATATATGCAC
13875063 CGTCATAACAGGCAAACCCTCAGA
258 CGTCATAACAGGCAAACCCTCAGA
13875087 T
1 T
13875088 CCTTCAGCAT
Statistics
Matches: 273, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
281 57 0.21
282 1 0.00
284 215 0.79
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (281 bp):
TGTAAGAATTGCTAATACTTTATGGAATAAACAACTTGCTTGTACTTTTTTTACTCCATCACCAT
GCAGTACATACTCAAATTGAATTCCAATTTTGTTAAAACATGATTAGTAAATATCTAAAGGCCTT
GATTTAAATTTTAAGACCCAGTCTTCAATTTAAGAAAATTATTGAGGAAATATCAATCAAAAACA
CATCATAGCCATTAAGATCAACAAAATTATAACACAGCAAAGTCAAGAAAATATATATGCACCGT
CATAACAGGCAAACCCTCAGA
Found at i:13879432 original size:182 final size:182
Alignment explanation
Indices: 13879139--13879617 Score: 710
Period size: 182 Copynumber: 2.6 Consensus size: 182
13879129 CGATCCAAAT
* * * * * *
13879139 TAAAAATGTATCGATTCATATCAATATAACAGGTAAAAATATGATAAAACCGGTCA-CGAAAAGA
1 TAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGT-ATCGAAATGA
* * * * *
13879203 CAATACCGGTAAAGCCCTA-CCGAATATATTGAATGTGTCGATACTTTAATATAAGGATCGACAC
65 TAAAACCGGTAAAGCACTATCAG-ATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACAC
13879267 TTTGTGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTA
129 TTTGTGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTA
*
13879321 TAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAATCGGTATCGAAATGAT
1 TAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCGAAATGAT
* * *
13879386 AAAACCGGTAAAGCACTATCAGATATATTTAAAGTGTCGGTACTTTAATATAAGTATCGACACTT
66 AAAACCGGTAAAGCACTATCAGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* *
13879451 TGTGAATTTAAAAGAGAATCAGTTTTAGCGCCTATAAAGTGTCGATACTTTA
131 TGTGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTA
* *
13879503 TAAAAATGTATTGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAAATGAT
1 TAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCGAAATGAT
* * * **
13879568 AAAACCAGTAAAGCGCTATCGGATATATTGAAAGCATCGATACTTTAATA
66 AAAACCGGTAAAGCACTATCAGATATATTGAAAGTGTCGATACTTTAATA
13879618 AGTATGTGTA
Statistics
Matches: 268, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
181 1 0.00
182 265 0.99
183 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (182 bp):
TAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCGAAATGAT
AAAACCGGTAAAGCACTATCAGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
TGTGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTA
Found at i:13879557 original size:20 final size:20
Alignment explanation
Indices: 13879534--13879571 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13879524 CGATATAACA
13879534 GGTA-AAAATATGATAAAATC
1 GGTATAAAA-ATGATAAAATC
*
13879554 GGTATCAAAATGATAAAA
1 GGTATAAAAATGATAAAA
13879572 CCAGTAAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.24
Consensus pattern (20 bp):
GGTATAAAAATGATAAAATC
Found at i:13881433 original size:22 final size:23
Alignment explanation
Indices: 13881383--13881438 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
13881373 AACTTTTTTG
* *
13881383 TGTTTTTATATAAAATGATAGTA
1 TGTTATTATATAAAATGATAGAA
*
13881406 TAGTTATTATATAAAATTATA-AA
1 T-GTTATTATATAAAATGATAGAA
13881429 TGTTATTATA
1 TGTTATTATA
13881439 AATGCAGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.31
23 3 0.10
24 17 0.59
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (23 bp):
TGTTATTATATAAAATGATAGAA
Found at i:13881850 original size:21 final size:21
Alignment explanation
Indices: 13881826--13881869 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
13881816 AAGACAATCA
13881826 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
13881847 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
13881868 AG
1 AG
13881870 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:13883782 original size:19 final size:19
Alignment explanation
Indices: 13883755--13883802 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
13883745 AATGTAGGGT
*
13883755 TAATGTTGTACAAGATTTA
1 TAATTTTGTACAAGATTTA
* *
13883774 TAATTTTGTATACGATTTA
1 TAATTTTGTACAAGATTTA
13883793 TAATTTTGTA
1 TAATTTTGTA
13883803 TGTAAATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.50
Consensus pattern (19 bp):
TAATTTTGTACAAGATTTA
Found at i:13885385 original size:63 final size:61
Alignment explanation
Indices: 13885234--13885394 Score: 169
Period size: 62 Copynumber: 2.6 Consensus size: 61
13885224 ATCACTAGAC
** * * **
13885234 GGGTGCATCGATGCACTATCTATGCATCGGTGCATAAATCCCATTCGATGTTTGTATTTAG
1 GGGTGCATCGATGCACTCCCTATGCATCGATGCACAAATCCCATTCGATGTTTCCATTTAG
* * * * * *
13885295 GGGATGCATCAATGCACTCCTTATGCATCGATGCACCAATCGCATTTGATGTTTCCATTTTAAT
1 GGG-TGCATCGATGCACTCCCTATGCATCGATGCACAAATCCCATTCGATGTTTCCA-TTT-AG
* *
13885359 GGGTGCATCGATGCACTCCCTGTGCATCGATACACA
1 GGGTGCATCGATGCACTCCCTATGCATCGATGCACA
13885395 CTGAACAATT
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
61 3 0.04
62 42 0.52
63 31 0.39
64 4 0.05
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (61 bp):
GGGTGCATCGATGCACTCCCTATGCATCGATGCACAAATCCCATTCGATGTTTCCATTTAG
Found at i:13886621 original size:199 final size:199
Alignment explanation
Indices: 13886370--13887528 Score: 1926
Period size: 200 Copynumber: 5.8 Consensus size: 199
13886360 GTAAGCATAT
*
13886370 GTGTCGATCCATATATAAAAAGTATCGATCCAAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCC-AGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
13886435 GGTAATTTTTCAATGTAACCGGTATAAATTTATCGGTTTTACGAGAGAATAGGTCTACAATATGT
65 GGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* *
13886500 ATTGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAATGGTGCAACC
130 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
13886565 ATAAA
195 ATAAA
*
13886570 GTGTCGATCTATTTATAAAAAGTATCGATCCAGAAACATCGAAACCCATAAGTATAATGTAATAG
1 GTGTCGATCCATTTATAAAAAGTATCGATCCAGAAACATCGAAACCCATAAGTATAATGTAATAG
* *
13886635 GTAAATTTTCAATCTAACCGGTATAAATATACCGGTTTTACGAGAAAATAGGTCTACAACATGTA
66 GTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGTA
* *
13886700 TCGACACTTTTTAATTTTGTGTCTATACTTTTGTTCCAGAATGAATGCCAAAAAGGGTGCAACCA
131 TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACCA
13886765 TAAA
196 TAAA
* *
13886769 GAGTCGATCCATTTATAAAACGTATCGATCCAGAAACATCGAAACCCATAAGTATAATGTAATAG
1 GTGTCGATCCATTTATAAAAAGTATCGATCCAGAAACATCGAAACCCATAAGTATAATGTAATAG
* *
13886834 GTAATTTTTCAATGTAACTGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGTA
66 GTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGTA
* *
13886899 TCGACACTTTTTAATTTTGTGTCGATACTTTTGTTCTAGAATGAATGCCAAAAAGGGTGCAACCA
131 TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACCA
13886964 TAAA
196 TAAA
*
13886968 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACTCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGAT-CCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
13887033 GGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTATATAACATGT
65 GGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
13887098 ATCGA-ACCTTTTTAATTTTGTGTCGATACTTTTGGTTCAGAATGAATGCCAAAAAGGGTGCAAC
130 ATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAAC
13887162 CATAAA
194 CATAAA
* ** * *
13887168 GTGTCAATATATTTATAAAAAATATTGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGAT-CCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
13887233 GGTAAATTTTCAATGTAACCGGTATAAATTTACCGGTTTTACAAGAGAATAGGTCTACAACATGT
65 GGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* *
13887298 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCTAGAATGAAT-CTCAAAAAGGGTGAAAC
130 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGC-CAAAAAGGGTGCAAC
13887362 CATAAA
194 CATAAA
*
13887368 GTGTTGATCCATTTATAAAAAGTATCGATCCTAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCC-AGAAACATCGAAACCCATAAGTATAATGTAATA
* *
13887433 GGTAAATTTTCAATGTAACCGGTATAAATATACCAGTTTTATGAGAGAATAGGTCTACAACATGT
65 GGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
13887498 ATCGACACTTTTTTAATTTTGTGTCAATACT
130 ATCGACAC-TTTTTAATTTTGTGTCGATACT
13887529 AATTTAAATA
Statistics
Matches: 898, Mismatches: 55, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
199 379 0.42
200 497 0.55
201 22 0.02
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (199 bp):
GTGTCGATCCATTTATAAAAAGTATCGATCCAGAAACATCGAAACCCATAAGTATAATGTAATAG
GTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGTA
TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACCA
TAAA
Found at i:13890557 original size:51 final size:52
Alignment explanation
Indices: 13890489--13890597 Score: 134
Period size: 51 Copynumber: 2.1 Consensus size: 52
13890479 ACAATGGATG
*
13890489 CCAAAACGGGTGAACGCACAAAGTGTCGATACATTT-TCAAAGAGTGTCTAT-
1 CCAAAACGGGTGAACGCACAAAGTGTCGATACATTTATCAAA-AGTGTCGATC
* * * *
13890540 CCAAAA-GGGTTGCACGCATAAAGTTTCGATACATTTATTAAAAGTGTCGATC
1 CCAAAACGGG-TGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATC
13890592 CCAAAA
1 CCAAAA
13890598 ATATCGAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
50 3 0.06
51 37 0.74
52 10 0.20
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (52 bp):
CCAAAACGGGTGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATC
Found at i:13890670 original size:251 final size:251
Alignment explanation
Indices: 13890306--13890793 Score: 653
Period size: 252 Copynumber: 1.9 Consensus size: 251
13890296 TAAAGTTTCC
*
13890306 CATAAAGTGTTGATCCATATATAAAAAGTAACGACCCCAAAAACATCGAAACTAATAATTATAAT
1 CATAAAGTGTTGATACATATATAAAAAGTAACGACCCCAAAAACATCGAAACTAATAATTATAAT
* * *
13890371 GTAATCGGTAATTTTTCAATGTAACCGGTATAAATATACCGATTTTATGA-AAAATAGGTCT-TC
66 GTAATAGATAATTTTTCAATATAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCTAT-
* * *
13890434 AACATGTATTGACACTTATCAATATCGTGTCAATACTTTTTGTCCACAATGGAT-GCCAAAACGG
130 AACATGTATCGACACTTATCAATATCGTGTCAATAATTTTTGTCCACAATGGATAG-CAAAAAGG
* * *
13890498 GTGAACGCACAAAGTGTCGATACATTTTCAAAGAGTGTCTATCCAAAAGGGTTGCACG
194 GTGAACACACAAAGTGTCGATACATTTTCAAAAAGTGTCAATCCAAAAGGGTTGCACG
* * ** * * *
13890556 CATAAAGT-TTCGATACATTTATTAAAAGTGTCGATCCCAAAAATATCGAAACCTCATAATTATA
1 CATAAAGTGTT-GATACATATATAAAAAGTAACGACCCCAAAAACATCGAAA-CTAATAATTATA
** * *
13890620 ATGTAATAGATAATTTTGT-AATATAACCGGTATACGTATACCGGTTTTATGAGAGAATAGGTCT
64 ATGTAATAGATAATTTT-TCAATATAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCT
* * * * *
13890684 ATAACATGTATCGACACTTCTTAATATTGTGTCGATAATTTTTGTCCAGAATGGATAGCAAAAAG
128 ATAACATGTATCGACACTTATCAATATCGTGTCAATAATTTTTGTCCACAATGGATAGCAAAAAG
*
13890749 GGTGAACACATAAAGTGTCGATACATTTTCAAAAAGTGTCAATCC
193 GGTGAACACACAAAGTGTCGATACATTTTCAAAAAGTGTCAATCC
13890794 TGAAAACATC
Statistics
Matches: 205, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
249 2 0.01
250 41 0.20
251 55 0.27
252 105 0.51
253 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (251 bp):
CATAAAGTGTTGATACATATATAAAAAGTAACGACCCCAAAAACATCGAAACTAATAATTATAAT
GTAATAGATAATTTTTCAATATAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCTATA
ACATGTATCGACACTTATCAATATCGTGTCAATAATTTTTGTCCACAATGGATAGCAAAAAGGGT
GAACACACAAAGTGTCGATACATTTTCAAAAAGTGTCAATCCAAAAGGGTTGCACG
Found at i:13890952 original size:177 final size:177
Alignment explanation
Indices: 13890656--13891010 Score: 525
Period size: 177 Copynumber: 2.0 Consensus size: 177
13890646 CCGGTATACG
* * * * *
13890656 TATACCGGTTTTATGAGAGAATAGGTCTATAACATGTATCGACACTTCTTAATATTGTGTCGATA
1 TATACCGGTTTTATAAAAGAATAGGTCTATAACATGTATCGACACTTATAAATATTATGTCGATA
* * * *
13890721 ATTTTTGTCCAGAATGGATAGCAAAAAGGGTGAACACATAAAGTGTCGATACATTTTCAAAAAGT
66 ATTTATGTCCAGAATGGATAGCAAAAAGGATGAACACACAAAGTGTCAATACATTTTCAAAAAGT
**
13890786 GTCAATCCTGAAAACATCGAAACCCATAATTATAATGTAATAGGTAA
131 GTCAATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAA
13890833 TATACCGGTTTTATAAAAGAATAGGTCTATAACATGTATCGACACTATATAAAT-TTATGTCGAT
1 TATACCGGTTTTATAAAAGAATAGGTCTATAACATGTATCGACACT-TATAAATATTATGTCGAT
* * * * *
13890897 ACTTTATGTCCAGAATGGAT-GCCAGAAAGGATGAACGCACAAAGTGTTAATACATTTTCAAAAT
65 AATTTATGTCCAGAATGGATAG-CAAAAAGGATGAACACACAAAGTGTCAATACATTTTCAAAAA
*
13890961 GTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAA
129 GTGTCAATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAA
13891010 T
1 T
13891011 TTTTTAATAT
Statistics
Matches: 159, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
176 1 0.01
177 153 0.96
178 5 0.03
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.30
Consensus pattern (177 bp):
TATACCGGTTTTATAAAAGAATAGGTCTATAACATGTATCGACACTTATAAATATTATGTCGATA
ATTTATGTCCAGAATGGATAGCAAAAAGGATGAACACACAAAGTGTCAATACATTTTCAAAAAGT
GTCAATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAA
Found at i:13893815 original size:200 final size:198
Alignment explanation
Indices: 13893424--13894126 Score: 736
Period size: 201 Copynumber: 3.5 Consensus size: 198
13893414 ACCTTAATAT
* * *
13893424 GTGTCGATACATTT-TATACAAGTATCGA-CCCAAAAAATATCAAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTATATAAAAGTATCGATCCC-AAAAACATCGAAACCAATAATTATAATGTAA
* * * * * * * *
13893487 TAGATAAATTAATAATGTAACCGGTATAAATATA-CCGATTAATTAGAAAACAGGTCAACATAAT
65 TAGGTAAATTTACAATGTAACCGGTATAAATATATCAGTTTTATGAGAAAATAGGTC-ACATAAT
* * * * *
13893551 GTATCGACACTTGTGGAATTTGTGTCGATACTTATTGTCCAGGATGAATGCACAAACGAGGTGCA
129 GTATCGACACTTGT-TAATTTGTGTCGATACTT-TTGTCCTGAATTAATGC-CAAACAAGGTGCA
13893616 CGCATAAA
191 CGCATAAA
* * * *
13893624 ATGTCGATACATTTAT-TAAAAGTATCGATACCAAAAACATCGAAACCGATAATTATAATGTATT
1 GTGTCGATACATTTATATAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAAT
* * *
13893688 AGGTAAATTTACAATGTAACCGATATAAATATATCAGTTTTATGATAAAATAGGTCAGCATAAAG
66 AGGTAAATTTACAATGTAACCGGTATAAATATATCAGTTTTATGAGAAAATAGGTCA-CATAATG
*
13893753 TATCGACACTTGTTAAATTTGTGTCGATACTTTTGGTCCTGAATTAATGCCAAAAAAGGTGCAAC
130 TATCGACACTTGTT-AATTTGTGTCGATACTTTT-GTCCTGAATTAATGCCAAACAAGGTGC-AC
13893818 -CATAAA
192 GCATAAA
** * * * * *
13893824 GTGTTAATACATTTATAAAAAAATATCGATCCCGAAAACATCGAAACCCATAAGTATAATGTAAT
1 GTGTCGATACATTTATATAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAAT
* * * * *
13893889 AGGTAAATTTTCAATGTAACCGGTATAAATATATCGGTTTTATGAGAGAGTAGGTCTAAATAATG
66 AGGTAAATTTACAATGTAACCGGTATAAATATATCAGTTTTATGAGAAAATAGGTC-ACATAATG
* * * * *
13893954 TATCGACACTTTGTTAGTTTGTGTCGATACTTTTTTCCAGAATGAAATATAAATTCCCAACCAGG
130 TATCGACAC-TTGTTAATTTGTGTCGATACTTTTGTCC----TG-AAT-T-AATGCCAAACAAGG
*
13894019 TGCAAGCATAAA
187 TGCACGCATAAA
** ** * *
13894031 GTGTCGATACATTTA-A-AATTGTATCGATCTAAAAAACATCGAAACCAATACTAATAATGTAAT
1 GTGTCGATACATTTATATAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAAT
* * *
13894094 AGGTTAATTTGCAATGTTACCGGTATAAATATA
66 AGGTAAATTTACAATGTAACCGGTATAAATATA
13894127 CCGGTTTACT
Statistics
Matches: 421, Mismatches: 64, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
200 116 0.28
201 192 0.46
202 6 0.01
204 2 0.00
205 70 0.17
206 3 0.01
207 32 0.08
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (198 bp):
GTGTCGATACATTTATATAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAAT
AGGTAAATTTACAATGTAACCGGTATAAATATATCAGTTTTATGAGAAAATAGGTCACATAATGT
ATCGACACTTGTTAATTTGTGTCGATACTTTTGTCCTGAATTAATGCCAAACAAGGTGCACGCAT
AAA
Found at i:13894252 original size:87 final size:87
Alignment explanation
Indices: 13894151--13894312 Score: 288
Period size: 87 Copynumber: 1.9 Consensus size: 87
13894141 AAATAGATCA
*
13894151 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTTTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTATACTTGATAATATTT
13894216 CCGGTTAAATGCTTATTTTATT
66 CCGGTTAAATGCTTATTTTATT
* * *
13894238 ATATAAGCGCTACCTATTATATTATATAAGCGCTATCTAATATGTTATTATACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTATACTTGATAATATTT
13894303 CCGGTTAAAT
66 CCGGTTAAAT
13894313 AATATAATAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTATACTTGATAATATTT
CCGGTTAAATGCTTATTTTATT
Found at i:13894285 original size:23 final size:23
Alignment explanation
Indices: 13894234--13894285 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
13894224 ATGCTTATTT
*
13894234 TATTATATAAGCGCTACCTATTA
1 TATTATATAAGCGCTACCTAATA
*
13894257 TATTATATAAGCGCTATCTAATA
1 TATTATATAAGCGCTACCTAATA
*
13894280 TGTTAT
1 TATTAT
13894286 TATACTTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TATTATATAAGCGCTACCTAATA
Found at i:13894287 original size:26 final size:23
Alignment explanation
Indices: 13894229--13894272 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
13894219 GTTAAATGCT
13894229 TATTTTATTATATAAGCGCTACC
1 TATTTTATTATATAAGCGCTACC
*
13894252 TATTATATTATATAAGCGCTA
1 TATTTTATTATATAAGCGCTA
13894273 TCTAATATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (23 bp):
TATTTTATTATATAAGCGCTACC
Found at i:13895752 original size:2 final size:2
Alignment explanation
Indices: 13895745--13895775 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
13895735 TTAACAGATC
*
13895745 AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13895776 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:13895780 original size:2 final size:2
Alignment explanation
Indices: 13895775--13895801 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13895765 AGATATATAT
13895775 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
13895802 ACTTACTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13896196 original size:37 final size:37
Alignment explanation
Indices: 13896155--13896307 Score: 288
Period size: 37 Copynumber: 4.1 Consensus size: 37
13896145 AGTAAGAGAG
13896155 AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
1 AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
*
13896192 AGAGAGAAGGGTGTACAATAATAATTAGAATAGTAGA
1 AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
*
13896229 AGAGAGAAGGGTGTACAAGAATTATTAGAATAGTAGA
1 AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
13896266 AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
1 AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
13896303 AGAGA
1 AGAGA
13896308 AAAATATATA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 112 1.00
ACGTcount: A:0.48, C:0.03, G:0.29, T:0.20
Consensus pattern (37 bp):
AGAGAGAAGGGTGTACAAGAATAATTAGAATAGTAGA
Found at i:13896940 original size:37 final size:40
Alignment explanation
Indices: 13896895--13897000 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 40
13896885 TTGATTTTAA
* * *
13896895 TTTTAATATTATTTTTTA-A-A-TAAATTAAATATTAATT
1 TTTTAATATTATATTATAGATATTAAATTAAATATCAATT
* *
13896932 TTTTAATATTATATTATAGATATTAATTTTAATATCAATT
1 TTTTAATATTATATTATAGATATTAAATTAAATATCAATT
*
13896972 TTTTAATATTATATTATAGATATTTAATT
1 TTTTAATATTATATTATAGATATTAAATT
13897001 TTATATCATA
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
37 16 0.27
38 1 0.02
39 1 0.02
40 41 0.69
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.57
Consensus pattern (40 bp):
TTTTAATATTATATTATAGATATTAAATTAAATATCAATT
Found at i:13896971 original size:12 final size:12
Alignment explanation
Indices: 13896868--13897003 Score: 73
Period size: 14 Copynumber: 10.8 Consensus size: 12
13896858 GGTTTTATAT
13896868 TTAATTTT-ATA
1 TTAATTTTAATA
* *
13896879 TT-ATATTTGATT
1 TTAAT-TTTAATA
13896891 TTAATTTTAATA
1 TTAATTTTAATA
*
13896903 TTATTTTTTAA-A
1 TTA-ATTTTAATA
* *
13896915 -TAAATTAAATA
1 TTAATTTTAATA
13896926 TTAATTTTTTAATA
1 TTAA--TTTTAATA
*
13896940 TTATATTATAGATA
1 TTA-ATTTTA-ATA
13896954 TTAATTTTAATA
1 TTAATTTTAATA
*
13896966 TCAATTTTTTAATA
1 TTAA--TTTTAATA
*
13896980 TTATATTATAGATA
1 TTA-ATTTTA-ATA
13896994 TTTAATTTTA
1 -TTAATTTTA
13897004 TATCATATAA
Statistics
Matches: 95, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
10 6 0.06
11 8 0.08
12 22 0.23
13 21 0.22
14 33 0.35
15 5 0.05
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (12 bp):
TTAATTTTAATA
Found at i:13896974 original size:40 final size:41
Alignment explanation
Indices: 13896922--13897008 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 41
13896912 AAATAAATTA
*
13896922 AATATTAATTTTTTAATATTATATTATAGATA-TTAATTTT
1 AATATCAATTTTTTAATATTATATTATAGATATTTAATTTT
13896962 AATATCAATTTTTTAATATTATATTATAGATATTTAATTTT
1 AATATCAATTTTTTAATATTATATTATAGATATTTAATTTT
13897003 -ATATCA
1 AATATCA
13897009 TATAAATTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 37 0.82
41 8 0.18
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (41 bp):
AATATCAATTTTTTAATATTATATTATAGATATTTAATTTT
Found at i:13896994 original size:14 final size:13
Alignment explanation
Indices: 13896876--13896995 Score: 54
Period size: 13 Copynumber: 9.4 Consensus size: 13
13896866 ATTTAATTTT
*
13896876 ATATTATATT-TG
1 ATATTATATTATA
* *
13896888 ATTTTA-ATTTTA
1 ATATTATATTATA
* *
13896900 ATATTATTTTTTA
1 ATATTATATTATA
*
13896913 A-A-TAAATTA-A
1 ATATTATATTATA
* *
13896923 ATATTAATTTTTTA
1 ATATT-ATATTATA
13896937 ATATTATATTATA
1 ATATTATATTATA
*
13896950 GATATTA-ATTTTA
1 -ATATTATATTATA
* * *
13896963 ATATCAATTTTTTA
1 ATAT-TATATTATA
13896977 ATATTATATTATA
1 ATATTATATTATA
13896990 GATATT
1 -ATATT
13896996 TAATTTTATA
Statistics
Matches: 80, Mismatches: 18, Indels: 18
0.69 0.16 0.16
Matches are distributed among these distances:
10 2 0.03
11 8 0.10
12 17 0.21
13 27 0.34
14 26 0.32
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (13 bp):
ATATTATATTATA
Found at i:13897005 original size:61 final size:62
Alignment explanation
Indices: 13896864--13897011 Score: 151
Period size: 61 Copynumber: 2.3 Consensus size: 62
13896854 AAGAGGTTTT
* *
13896864 ATATTTAATTTTATATTATATTTGATTTTAATTTTAATATTATTTTTTAAATAAATTAAATATTA
1 ATATTTAATTTTATATTATA--TGATATTAATTTTAATATAATTTTTTAAAT-AATT-AATATTA
13896929 A
62 A
* * *
13896930 TTTTTTAATATTATATTATA-GATATTAATTTTAATATCAATTTTTT-AAT-ATT-ATATTATA
1 ATATTTAATTTTATATTATATGATATTAATTTTAATAT-AATTTTTTAAATAATTAATATTA-A
*
13896990 GATATTTAATTTTATATCATAT
1 -ATATTTAATTTTATATTATAT
13897012 AAATTATTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
59 6 0.09
60 1 0.01
61 19 0.28
63 19 0.28
64 7 0.10
66 17 0.25
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.57
Consensus pattern (62 bp):
ATATTTAATTTTATATTATATGATATTAATTTTAATATAATTTTTTAAATAATTAATATTAA
Found at i:13897018 original size:35 final size:38
Alignment explanation
Indices: 13896935--13897023 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 38
13896925 ATTAATTTTT
*
13896935 TAATATTATATTATAGATATTAATTTTAATATCAATTTTT
1 TAATATTATATTATAGATATTAATTTTAATATCAA--TTA
13896975 TAATATTATATTATAGATATTTAATTTT-ATATC-A-TA
1 TAATATTATATTATAGATA-TTAATTTTAATATCAATTA
*
13897011 TAA-ATTATTTTAT
1 TAATATTATATTAT
13897024 GTATTATTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
35 9 0.20
36 4 0.09
39 1 0.02
40 24 0.52
41 8 0.17
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (38 bp):
TAATATTATATTATAGATATTAATTTTAATATCAATTA
Found at i:13897567 original size:31 final size:31
Alignment explanation
Indices: 13897530--13897589 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
13897520 TAGTTATATG
* * *
13897530 AATTATTTAAATTTTAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
13897561 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTGCAAAACT
13897590 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:13897926 original size:39 final size:42
Alignment explanation
Indices: 13897883--13897966 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 42
13897873 TGGCCTGGCC
* *
13897883 TATTTAA-TAAA-AAGGCCAGG-TCAGGCCTTTTTAAAAG-CT
1 TATTTAATTAAACAA-GCCAGGCTCAGGCCTATTAAAAAGCCT
*
13897922 TATTTAATTAAACAAGCCAGGCTTAGGCCTATTAAAAAGCCT
1 TATTTAATTAAACAAGCCAGGCTCAGGCCTATTAAAAAGCCT
13897964 TAT
1 TAT
13897967 AAGCCTGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
39 7 0.18
40 10 0.26
41 16 0.42
42 5 0.13
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (42 bp):
TATTTAATTAAACAAGCCAGGCTCAGGCCTATTAAAAAGCCT
Found at i:13897957 original size:40 final size:39
Alignment explanation
Indices: 13897883--13897958 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
13897873 TGGCCTGGCC
*
13897883 TATTTAATAAAAAGGCCAGGTCAGGCCTTTTTAAAAGCT
1 TATTTAATAAAAAGGCCAGGTCAGGCCTTATTAAAAGCT
*
13897922 TATTTAATTAAACAA-GCCAGGCTTAGGCC-TATTAAAA
1 TATTTAA-TAAA-AAGGCCAGG-TCAGGCCTTATTAAAA
13897959 AGCCTTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
39 7 0.22
40 17 0.53
41 8 0.25
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (39 bp):
TATTTAATAAAAAGGCCAGGTCAGGCCTTATTAAAAGCT
Found at i:13898866 original size:41 final size:40
Alignment explanation
Indices: 13898736--13898869 Score: 119
Period size: 41 Copynumber: 3.3 Consensus size: 40
13898726 TCCGAATATA
* **
13898736 TAGTGGCGTTT-TTAGGAAAACGCCACTAAAAACGCATACAT
1 TAGTGGCGTTTATTA--AAAACGCCGCTAAAAACGCATATGT
* ** **
13898777 TAGTGGTGTTTATGTAAAAACGCCGCTAAAATATACAGCTG-
1 TAGTGGCGTTTAT-TAAAAACGCCGCTAAAA-ACGCATATGT
* *
13898818 TACTGGCGTTTAATTAAAAACGCCGCTATAAACGCATATGT
1 TAGTGGCGTTT-ATTAAAAACGCCGCTAAAAACGCATATGT
13898859 TAGTGGCGTTT
1 TAGTGGCGTTT
13898870 TAGAATAAAC
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
40 5 0.07
41 59 0.82
42 6 0.08
43 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (40 bp):
TAGTGGCGTTTATTAAAAACGCCGCTAAAAACGCATATGT
Found at i:13900772 original size:3 final size:3
Alignment explanation
Indices: 13900759--13900788 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
13900749 CATGGTTTTG
13900759 ATT ATTT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT AT
13900789 ATTTTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:13902522 original size:2 final size:2
Alignment explanation
Indices: 13902510--13902573 Score: 119
Period size: 2 Copynumber: 31.5 Consensus size: 2
13902500 TATGCATGTG
13902510 TA TA CTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13902553 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
13902574 GTTTAATTCT
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 59 0.97
3 2 0.03
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13905704 original size:35 final size:35
Alignment explanation
Indices: 13905598--13905725 Score: 91
Period size: 35 Copynumber: 3.7 Consensus size: 35
13905588 TCAATGCTTA
* * * *
13905598 TGTTTAAAGAGAAACTGTCTCAAGTGAGACAAC-T
1 TGTTTCAAGAAAAACTATCTCAAATGAGACAACTT
** * * * *
13905632 TGTTTTTAG-AAAA-TAATCTCGAGTGAGATAAATTT
1 TGTTTCAAGAAAAACT-ATCTCAAATGAGA-CAACTT
*
13905667 TGTTTCAAGAAAAACTGTCTCAAATGAGACAACTT
1 TGTTTCAAGAAAAACTATCTCAAATGAGACAACTT
* * *
13905702 TGTTTCGAGAGAAACAATCTCAAA
1 TGTTTCAAGAAAAACTATCTCAAA
13905726 GGTGGCAGAC
Statistics
Matches: 71, Mismatches: 18, Indels: 9
0.72 0.18 0.09
Matches are distributed among these distances:
32 1 0.01
33 14 0.20
34 9 0.13
35 32 0.45
36 14 0.20
37 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (35 bp):
TGTTTCAAGAAAAACTATCTCAAATGAGACAACTT
Found at i:13914139 original size:23 final size:23
Alignment explanation
Indices: 13914106--13914173 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
13914096 GAGTCGAGGG
* *
13914106 TTCTACGTGGTCCTTCGGGACAA
1 TTCTACATGGTCATTCGGGACAA
*
13914129 TTCTACATGGTCATTCGGGACAT
1 TTCTACATGGTCATTCGGGACAA
***
13914152 TTCTATGCGGTCATTCGGGACA
1 TTCTACATGGTCATTCGGGACA
13914174 TCTATGTGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (23 bp):
TTCTACATGGTCATTCGGGACAA
Found at i:13914179 original size:21 final size:22
Alignment explanation
Indices: 13914114--13914184 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 22
13914104 GGTTCTACGT
* ***
13914114 GGTCCTTCGGGACAATTCTACAT
1 GGTCATTCGGGAC-ATTCTATGC
13914137 GGTCATTCGGGACATTTCTATGC
1 GGTCATTCGGGACA-TTCTATGC
*
13914160 GGTCATTCGGGACA-TCTATGT
1 GGTCATTCGGGACATTCTATGC
13914181 GGTC
1 GGTC
13914185 CTTCAGGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 10 0.24
22 1 0.02
23 31 0.74
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (22 bp):
GGTCATTCGGGACATTCTATGC
Found at i:13918945 original size:2 final size:2
Alignment explanation
Indices: 13918938--13918968 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
13918928 TTTCACATAA
13918938 AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
13918969 CTTGTTCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13923376 original size:23 final size:23
Alignment explanation
Indices: 13923350--13923413 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
13923340 GAGTCGAGGG
13923350 TTCTACAT-GTTCCTTCGGGACAA
1 TTCTACATAG-TCCTTCGGGACAA
* * *
13923373 TTCTACGTAGTCCTTTGGGACAT
1 TTCTACATAGTCCTTCGGGACAA
* *
13923396 TTCTACACAGTCATTCGG
1 TTCTACATAGTCCTTCGG
13923414 AACATCTATG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (23 bp):
TTCTACATAGTCCTTCGGGACAA
Found at i:13923433 original size:21 final size:22
Alignment explanation
Indices: 13923409--13923449 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
13923399 TACACAGTCA
13923409 TTCGGAACA-TCTATGTGGTCT
1 TTCGGAACATTCTATGTGGTCT
*
13923430 TTCGGGACATTCTATGTGGT
1 TTCGGAACATTCTATGTGGT
13923450 ACTTCGGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (22 bp):
TTCGGAACATTCTATGTGGTCT
Found at i:13923477 original size:24 final size:24
Alignment explanation
Indices: 13923439--13923488 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
13923429 TTTCGGGACA
* * *
13923439 TTCTATGTGGTACTTCGGTGCAAT
1 TTCTATGCGGCACTTCGATGCAAT
13923463 TTCTATGCGGCACTTCGATGCAAT
1 TTCTATGCGGCACTTCGATGCAAT
13923487 TT
1 TT
13923489 ATGCGAGCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (24 bp):
TTCTATGCGGCACTTCGATGCAAT
Found at i:13924352 original size:17 final size:17
Alignment explanation
Indices: 13924330--13924367 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13924320 TTATAACGAG
13924330 AAATTAATATTTGTTA-T
1 AAATTAATATTT-TTATT
*
13924347 AAATTATTATTTTTATT
1 AAATTAATATTTTTATT
13924364 AAAT
1 AAAT
13924368 AAATTTGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
AAATTAATATTTTTATT
Found at i:13926678 original size:19 final size:19
Alignment explanation
Indices: 13926640--13926679 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
13926630 ACAATATATG
* *
13926640 TTATCACTATAATTAAAAT
1 TTATAACTATAAGTAAAAT
*
13926659 TTATAACTATAAGTATAAT
1 TTATAACTATAAGTAAAAT
13926678 TT
1 TT
13926680 GTCACAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (19 bp):
TTATAACTATAAGTAAAAT
Found at i:13927112 original size:42 final size:44
Alignment explanation
Indices: 13927042--13927192 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 44
13927032 TGTTGCGATT
*
13927042 TAGCGGCGTTTTTCGGATACAAACGCCACAAAA-GTCTGTTATA
1 TAGCGGCGTTTTTCGGATACAAACGCCACAAAAGGTCTGGTATA
* * *
13927085 TAGCGGTGTTTTT-TGATACAAATGCCACAAAAGGTCTGGTATA
1 TAGCGGCGTTTTTCGGATACAAACGCCACAAAAGGTCTGGTATA
* * ** * * *
13927128 TAGCGGC-TTTTT--TATTATAAACATCGCAAAATGTTTGGTATA
1 TAGCGGCGTTTTTCGGA-TACAAACGCCACAAAAGGTCTGGTATA
*
13927170 TAGCGGCGTTTTTCGTATACAAA
1 TAGCGGCGTTTTTCGGATACAAA
13927193 TGAAGATACT
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 49 0.55
43 32 0.36
44 5 0.06
45 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (44 bp):
TAGCGGCGTTTTTCGGATACAAACGCCACAAAAGGTCTGGTATA
Found at i:13927238 original size:3 final size:3
Alignment explanation
Indices: 13927226--13927300 Score: 50
Period size: 3 Copynumber: 26.0 Consensus size: 3
13927216 CTTTTGTTTT
* * *
13927226 TTA TTA -TA TTA TTA TTA ATA TTA TT- TTA TT- TATA CTA TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * *
13927269 TTA TTT TTA -TA TTA TTA TAA TAA TAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13927301 AATAATATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
2 7 0.12
3 50 0.88
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:13927249 original size:17 final size:17
Alignment explanation
Indices: 13927227--13927300 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 17
13927217 TTTTGTTTTT
13927227 TATTATATTATTATTAA
1 TATTATATTATTATTAA
* *
13927244 TATTATTTTATT-TATAC
1 TATTATATTATTAT-TAA
13927261 TATTAT-TT-TTATT--
1 TATTATATTATTATTAA
13927274 T-TTATATTATTA-TAA
1 TATTATATTATTATTAA
*
13927289 TAATA-ATTATTA
1 TATTATATTATTA
13927301 AATAATATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 16
0.71 0.05 0.24
Matches are distributed among these distances:
12 4 0.09
13 4 0.09
14 3 0.06
15 11 0.23
16 6 0.13
17 19 0.40
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTATATTATTATTAA
Found at i:13927252 original size:26 final size:26
Alignment explanation
Indices: 13927223--13927299 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
13927213 ATCCTTTTGT
13927223 TTTTTATTATATTATTATTAATATTA
1 TTTTTATTATATTATTATTAATATTA
*
13927249 -TTTTATTTATACTATTATT--T-TTA
1 TTTTTA-TTATATTATTATTAATATTA
*
13927272 TTTTTA-TATTATTA-TAATAATAATTA
1 TTTTTATTA-TATTATTATTAAT-ATTA
13927298 TT
1 TT
13927300 AAATAATATT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
22 5 0.12
23 7 0.17
24 7 0.17
25 5 0.12
26 17 0.41
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTTTATTATATTATTATTAATATTA
Found at i:13927267 original size:20 final size:19
Alignment explanation
Indices: 13927226--13927286 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 19
13927216 CTTTTGTTTT
*
13927226 TTATTATATTA-TTAT-TA
1 TTATTATTTTATTTATATA
*
13927243 ATATTATTTTATTTATACTA
1 TTATTATTTTATTTATA-TA
*
13927263 TTA-T-TTTTATTTTTATA
1 TTATTATTTTATTTATATA
13927280 TTATTAT
1 TTATTAT
13927287 AATAATAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 14 0.40
18 15 0.43
19 2 0.06
20 4 0.11
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTATTTTATTTATATA
Found at i:13927304 original size:14 final size:15
Alignment explanation
Indices: 13927279--13927307 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13927269 TTATTTTTAT
13927279 ATTATTATAATAATA
1 ATTATTATAATAATA
13927294 ATTATTA-AATAATA
1 ATTATTATAATAATA
13927308 TTTTGTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATTATAATAATA
Found at i:13928424 original size:2 final size:2
Alignment explanation
Indices: 13928417--13928460 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
13928407 AATCACTGGC
13928417 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13928459 AT
1 AT
13928461 TAAGTAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13928804 original size:23 final size:22
Alignment explanation
Indices: 13928763--13928817 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 22
13928753 TTTATTTTAG
13928763 TTATTGTTTATTTATATTTTAATT-
1 TTATTGTTTA--TATA-TTTAATTA
13928787 TTATATGTTTATATATTTAATTA
1 TTAT-TGTTTATATATTTAATTA
13928810 TTATTGTT
1 TTATTGTT
13928818 ATTATTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.38
23 8 0.28
24 4 0.14
25 6 0.21
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
TTATTGTTTATATATTTAATTA
Found at i:13929045 original size:144 final size:141
Alignment explanation
Indices: 13928884--13929194 Score: 335
Period size: 144 Copynumber: 2.2 Consensus size: 141
13928874 TTTTATATAT
* *
13928884 TAAATAAAAATCTTATTT-TAAATT-TA-ATTTTATATAAATTACTTTTAAGCAAAATTAATCAT
1 TAAATAAATATCTTATTTATAAATTATATAATTTATATAAATTA-TTTTAAG--AAA-T-AT-AT
* *
13928946 ATT-TTAGTATTTATTTATTTTTTAATATTAAAGAAAAGGGTTGTCTTAAAGCAACTAGAAATCC
60 ATTATTAATATTTATTTATTTTTTAATATT-AAGAAAAGGGATGTCTTAAAGCAACTAGAAATCC
*
13929010 TTTTCTAATA-TTCTTAAA
124 TTTTCCAATATTTC-TAAA
* * * * * *
13929028 TAAATAAATATCATATTTTTATAAATTATATTAATTTATTTTAATTATTTTTAGAGATATATTTT
1 TAAATAAATATC-T-TATTTATAAATTATA-TAATTTATATAAATTATTTTAAGAAATATATATT
* * * *
13929093 ATTAATATTTATTTATTTTTTAATATTAAGAAATGGGATGTCTTAAAGCACCTAGAAGTCTTTTT
63 ATTAATATTTATTTATTTTTTAATATTAAGAAAAGGGATGTCTTAAAGCAACTAGAAATCCTTTT
* *
13929158 CCGATATTTCTAAG
128 CCAATATTTCTAAA
13929172 TAAATAAATATCTTATTTATAAA
1 TAAATAAATATCTTATTTATAAA
13929195 AATATAAATA
Statistics
Matches: 141, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
142 9 0.06
143 1 0.01
144 67 0.48
145 31 0.22
146 5 0.04
147 8 0.06
148 2 0.01
149 6 0.04
150 12 0.09
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (141 bp):
TAAATAAATATCTTATTTATAAATTATATAATTTATATAAATTATTTTAAGAAATATATATTATT
AATATTTATTTATTTTTTAATATTAAGAAAAGGGATGTCTTAAAGCAACTAGAAATCCTTTTCCA
ATATTTCTAAA
Found at i:13930655 original size:36 final size:36
Alignment explanation
Indices: 13930604--13930711 Score: 171
Period size: 36 Copynumber: 3.0 Consensus size: 36
13930594 GAGCTATGCA
13930604 CACAAAGATCATGTTATATTAATACCAAAAGTATTC
1 CACAAAGATCATGTTATATTAATACCAAAAGTATTC
*
13930640 CACAAAGATCCTGTTATATTAATACCAAAAGTATTC
1 CACAAAGATCATGTTATATTAATACCAAAAGTATTC
* * * *
13930676 CACAAAGATCTTGTTAGATTGATACCAAAAGCATTC
1 CACAAAGATCATGTTATATTAATACCAAAAGTATTC
13930712 TACGGCAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (36 bp):
CACAAAGATCATGTTATATTAATACCAAAAGTATTC
Found at i:13931337 original size:21 final size:20
Alignment explanation
Indices: 13931308--13931347 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
13931298 GCATTTGTTG
13931308 TTTGCTTTTT-TATTACACAA
1 TTTGCTTTTTATATT-CACAA
13931328 TTTGCATTTTTATATTCACA
1 TTTGC-TTTTTATATTCACA
13931348 TCTTTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.25, C:0.15, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTGCTTTTTATATTCACAA
Found at i:13931367 original size:12 final size:12
Alignment explanation
Indices: 13931350--13931374 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13931340 TATTCACATC
13931350 TTTGTATTTGCA
1 TTTGTATTTGCA
13931362 TTTGTATTTGCA
1 TTTGTATTTGCA
13931374 T
1 T
13931375 CTTTGCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TTTGTATTTGCA
Found at i:13931376 original size:26 final size:28
Alignment explanation
Indices: 13931327--13931384 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
13931317 TTATTACACA
* *
13931327 ATTTGCATTTTTATATTCACATCTTTGT
1 ATTTGCATTTGTATATTCACATCTTTGC
*
13931355 ATTTGCATTTGTAT-TT-GCATCTTTGC
1 ATTTGCATTTGTATATTCACATCTTTGC
13931381 ATTT
1 ATTT
13931385 TTATATTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 12 0.44
27 2 0.07
28 13 0.48
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (28 bp):
ATTTGCATTTGTATATTCACATCTTTGC
Found at i:13938900 original size:54 final size:54
Alignment explanation
Indices: 13938812--13939029 Score: 296
Period size: 54 Copynumber: 4.0 Consensus size: 54
13938802 CCTTGACCAG
* * * * *
13938812 ACATCTGTGCAGAAGCCACAGGAAAGGATAAATGTGTTGTCAAATGTTTTACGA
1 ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTTGTCAAATATTTTACGA
* *
13938866 ACATCT-ATGCCGAAACCACAGGAAAAGATGAATGTTTTGTCAAATATTTTACGA
1 ACATCTGA-GCAGAAACCACAGGAAAAGATGAATGTGTTGTCAAATATTTTACGA
* * *
13938920 ACATCTGAGCATAAACCACAGGAAAATG-TGAATGTATTGTCAAATGTTTTACGA
1 ACATCTGAGCAGAAACCACAGGAAAA-GATGAATGTGTTGTCAAATATTTTACGA
* *
13938974 ACATCTGAGCAGAAGCCACAGGAAAAGATGAATGTGTTGTCTAATATTTTACGA
1 ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTTGTCAAATATTTTACGA
13939028 AC
1 AC
13939030 CATTGATTAT
Statistics
Matches: 144, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 141 0.98
55 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (54 bp):
ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTTGTCAAATATTTTACGA
Found at i:13939992 original size:112 final size:112
Alignment explanation
Indices: 13939795--13940081 Score: 432
Period size: 112 Copynumber: 2.6 Consensus size: 112
13939785 GATTCAAATC
* * ** * *
13939795 CATCATTCGATGGATCAACATTCCCATATAGAGTTAATAATGAGAATAACTCATCTGAAG-AGGA
1 CATCACTCGATGGATCAACATTGCCGGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
13939859 AGACGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATT
65 AAAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATT
*
13939907 CATCACTCGATGGATCAACATTGTCGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
1 CATCACTCGATGGATCAACATTGCCGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
13939972 AAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATT
66 AAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATT
* * * *
13940019 CATCACTCGATGGATCAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCACCTAAAGAAG
1 CATCACTCGATGGATCAACATTGCC-GGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAG
13940082 AAGAACAACA
Statistics
Matches: 159, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
111 29 0.18
112 96 0.60
113 34 0.21
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (112 bp):
CATCACTCGATGGATCAACATTGCCGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
AAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATT
Found at i:13940420 original size:101 final size:102
Alignment explanation
Indices: 13940293--13940476 Score: 316
Period size: 101 Copynumber: 1.8 Consensus size: 102
13940283 GCAGCAGAGC
* * *
13940293 CATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAG
1 CATTTCCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAAGAAGTTCATAATGAG
13940358 AAGAACTTGTTCAACTTTAGCTTGATCGATGGATCAA
66 AAGAACTTGTTCAACTTTAGCTTGATCGATGGATCAA
*
13940395 CATTTCCA-GAAGAGTTCATAATGAGAAGAATTCATCTGAAAAAGAAGAAGAAGTTCATAATGAG
1 CATTTCCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAAGAAGTTCATAATGAG
*
13940459 AAGAATTTGTTCAACTTT
66 AAGAACTTGTTCAACTTT
13940477 TTGCTAAATT
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
101 69 0.90
102 8 0.10
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (102 bp):
CATTTCCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAAGAAGTTCATAATGAG
AAGAACTTGTTCAACTTTAGCTTGATCGATGGATCAA
Found at i:13940724 original size:3 final size:3
Alignment explanation
Indices: 13940713--13940791 Score: 60
Period size: 3 Copynumber: 27.7 Consensus size: 3
13940703 CATTTTTTTA
* *
13940713 TAT TA- TAT TAT TAT TAA TAT TAT T-T TAT T-T TAT T-T ATAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * *
13940755 TAT TTT TAT TTT TA- TAT TTT TAT AAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
13940792 AATAATATTT
Statistics
Matches: 58, Mismatches: 12, Indels: 12
0.71 0.15 0.15
Matches are distributed among these distances:
2 9 0.16
3 49 0.84
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.