Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 62
Found at i:1255920 original size:15 final size:15
Alignment explanation
Indices: 1255900--1255935 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
1255890 TTCTGGAAAA
1255900 TGAATTACTAGAATT
1 TGAATTACTAGAATT
*
1255915 TGAATTACTGGAATT
1 TGAATTACTAGAATT
1255930 TGAATT
1 TGAATT
1255936 CTGGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (15 bp):
TGAATTACTAGAATT
Found at i:1255975 original size:14 final size:14
Alignment explanation
Indices: 1255953--1256007 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
1255943 ATAAATTACA
* *
1255953 TTTCTGGAAAACGT
1 TTTCCGGAAAATGT
1255967 TTTCCGGAAAATGT
1 TTTCCGGAAAATGT
**
1255981 TTTCCTAAAAATGT
1 TTTCCGGAAAATGT
*
1255995 TTTCCGTAAAATG
1 TTTCCGGAAAATG
1256008 AATTACATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (14 bp):
TTTCCGGAAAATGT
Found at i:1256203 original size:35 final size:34
Alignment explanation
Indices: 1256164--1256261 Score: 83
Period size: 35 Copynumber: 2.7 Consensus size: 34
1256154 ATTAATTATT
*
1256164 TATTAA-AGTAATAGTGTTATATTATATTT-TAAAAA
1 TATTAATAGT-ATA-TGTTA-AATATATTTATAAAAA
*
1256199 TATTAATTAGTATATTTTAAATATATTTATAAAAA
1 TATTAA-TAGTATATGTTAAATATATTTATAAAAA
* *
1256234 TATTATTAGATTATTATATTAAATATAT
1 TATTAATAG--TA-TATGTTAAATATAT
1256262 AAATAATATT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
34 11 0.21
35 21 0.40
36 5 0.09
37 16 0.30
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (34 bp):
TATTAATAGTATATGTTAAATATATTTATAAAAA
Found at i:1256226 original size:34 final size:36
Alignment explanation
Indices: 1256186--1256261 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
1256176 AGTGTTATAT
*
1256186 TATATTT-TAAAAATATTAATTAG-TA-TATTTTAAA
1 TATATTTATAAAAATATT-ATTAGATATTATATTAAA
1256220 TATATTTATAAAAATATTATTAGATTATTATATTAAA
1 TATATTTATAAAAATATTATTAGA-TATTATATTAAA
1256257 TATAT
1 TATAT
1256262 AAATAATATT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
34 12 0.32
35 10 0.27
36 2 0.05
37 13 0.35
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (36 bp):
TATATTTATAAAAATATTATTAGATATTATATTAAA
Found at i:1256236 original size:23 final size:23
Alignment explanation
Indices: 1256187--1256237 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
1256177 GTGTTATATT
* **
1256187 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAAAATATTAATAAAA
* *
1256210 ATATTTTAAATATATTTATAAAA
1 ATATTTTAAAAATATTAATAAAA
1256233 ATATT
1 ATATT
1256238 ATTAGATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATTTTAAAAATATTAATAAAA
Found at i:1256252 original size:28 final size:27
Alignment explanation
Indices: 1256220--1256300 Score: 72
Period size: 33 Copynumber: 2.7 Consensus size: 27
1256210 ATATTTTAAA
*
1256220 TATATTTATAAAAATATTATTAGATTAT
1 TATATTTATAAAAATATTATT-CATTAT
1256248 TATATTAAATATATAAATAATATTATTCATTAT
1 TATA-T---T-TATAAA-AATATTATTCATTAT
* *
1256281 TAAATATATAAAAATATTAT
1 TATATTTATAAAAATATTAT
1256301 ATATTTATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
27 8 0.18
28 10 0.23
29 1 0.02
32 2 0.05
33 14 0.32
34 9 0.20
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (27 bp):
TATATTTATAAAAATATTATTCATTAT
Found at i:1256322 original size:25 final size:26
Alignment explanation
Indices: 1256245--1256336 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 26
1256235 ATTATTAGAT
*
1256245 TATTATATT-AAATATATAA-ATAATA
1 TATTATATTAAAATA-AAAATATAATA
*
1256270 TTATTCATTATTAAATATATAAAAATATTATA
1 -TATT-A-TATT-AA-A-ATAAAAATATAATA
1256302 TATT-TATTAAAATAAAAATATAATA
1 TATTATATTAAAATAAAAATATAATA
*
1256327 TCTTATATTA
1 TATTATATTA
1256337 TATTATTATA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
25 16 0.30
26 10 0.19
27 3 0.06
28 8 0.15
30 1 0.02
31 8 0.15
32 8 0.15
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
TATTATATTAAAATAAAAATATAATA
Found at i:1256413 original size:32 final size:32
Alignment explanation
Indices: 1256276--1256415 Score: 94
Period size: 31 Copynumber: 4.7 Consensus size: 32
1256266 AATATTATTC
*
1256276 ATTATTA-AATATATAAAAATATTA-T-A-TAT
1 ATTATTATAATAT-TAAAAATATAATTGATTAT
1256305 -TTATTA-AA-A-TAAAAATATAA-T-ATCT-T
1 ATTATTATAATATTAAAAATATAATTGAT-TAT
* *
1256331 A-TATTATATTATT-ATAATATAATTGATTAT
1 ATTATTATAATATTAAAAATATAATTGATTAT
*
1256361 TTTATTATAATATTAAAAATATAA-T-ATTAT
1 ATTATTATAATATTAAAAATATAATTGATTAT
*
1256391 ATTATTATAAATGTTAATAAATATA
1 ATTATTAT-AATATTAA-AAATATA
1256416 TTTTAAATAT
Statistics
Matches: 90, Mismatches: 8, Indels: 23
0.74 0.07 0.19
Matches are distributed among these distances:
25 12 0.13
26 6 0.07
27 3 0.03
28 17 0.19
29 3 0.03
30 15 0.17
31 19 0.21
32 15 0.17
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (32 bp):
ATTATTATAATATTAAAAATATAATTGATTAT
Found at i:1257268 original size:3 final size:3
Alignment explanation
Indices: 1257260--1257286 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1257250 GAAAATTTAC
1257260 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1257287 CACGGATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1257367 original size:60 final size:60
Alignment explanation
Indices: 1257294--1257428 Score: 136
Period size: 60 Copynumber: 2.2 Consensus size: 60
1257284 TATCACGGAT
* *
1257294 AAAG-TACACAAATGGTC-CCCTAACAATAGGGTA-TTGCTTTATTTAA-TACTTT-AACTTTTA
1 AAAGTTACA-AAATGGTCTCCC-AACAATAGGATACTT-ATTTA-TTAAGT-CTTTCAACTTTTA
* * * *
1257354 AAAGTTACAAAATGATCTCCCGACTATAGGATACTTATTTATTAAGTCTTTCGACTTTTA
1 AAAGTTACAAAATGGTCTCCCAACAATAGGATACTTATTTATTAAGTCTTTCAACTTTTA
1257414 AAAGTTACAAAATGG
1 AAAGTTACAAAATGG
1257429 ACCTTCGGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
59 8 0.13
60 46 0.73
61 9 0.14
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (60 bp):
AAAGTTACAAAATGGTCTCCCAACAATAGGATACTTATTTATTAAGTCTTTCAACTTTTA
Found at i:1257441 original size:60 final size:60
Alignment explanation
Indices: 1257347--1257486 Score: 178
Period size: 60 Copynumber: 2.3 Consensus size: 60
1257337 TAATACTTTA
*
1257347 ACTTTTAAAAGTTACAAAATGATCTCCCGACTATAG-GATACTTATTTATTAAGTCT-TTCG
1 ACTTTTAAAAGTTACAAAATGACCTCCCGACTATAGAG-TACTTATTTATTAAGT-TATTCG
* * * *
1257407 ACTTTTAAAAGTTACAAAATGGACCT-TCGGCTATAGAGTATTTCTTTATTAAGTTATTCG
1 ACTTTTAAAAGTTACAAAAT-GACCTCCCGACTATAGAGTACTTATTTATTAAGTTATTCG
*
1257467 ACTATTAAAAGTTACAAAAT
1 ACTTTTAAAAGTTACAAAAT
1257487 AATTACCCGA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
59 1 0.01
60 65 0.92
61 5 0.07
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (60 bp):
ACTTTTAAAAGTTACAAAATGACCTCCCGACTATAGAGTACTTATTTATTAAGTTATTCG
Found at i:1259966 original size:21 final size:21
Alignment explanation
Indices: 1259942--1260054 Score: 95
Period size: 21 Copynumber: 5.5 Consensus size: 21
1259932 GTTGCATTTT
1259942 GCGTTGCGATAGTTGAAAATC
1 GCGTTGCGATAGTTGAAAATC
* * ** **
1259963 GCGTTGCAAT-TTTCCATTTC
1 GCGTTGCGATAGTTGAAAATC
* *
1259983 GTGTTGCGACAGTTGAAAATC
1 GCGTTGCGATAGTTGAAAATC
* ** **
1260004 GCGTTGCGAT-TTTCCATTTC
1 GCGTTGCGATAGTTGAAAATC
1260024 GCGTTGCGATAGTTGAAAATC
1 GCGTTGCGATAGTTGAAAATC
1260045 GCGTTGCGAT
1 GCGTTGCGAT
1260055 TTTCCATTTC
Statistics
Matches: 64, Mismatches: 26, Indels: 4
0.68 0.28 0.04
Matches are distributed among these distances:
20 27 0.42
21 37 0.58
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (21 bp):
GCGTTGCGATAGTTGAAAATC
Found at i:1259981 original size:41 final size:41
Alignment explanation
Indices: 1259936--1260123 Score: 258
Period size: 41 Copynumber: 4.6 Consensus size: 41
1259926 ATTCGCGTTG
* *
1259936 CATTTTGCGTTGCGATAGTTGAAAATCGCGTTGCAATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
* *
1259977 CATTTCGTGTTGCGACAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1260018 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
1260059 CATTTCGCGTTGCGATAGTCT-ACAAT-GCCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTC
* *
1260100 CAAATT--CGTTGCGATAGTTAAAAA
1 C-ATTTCGCGTTGCGATAGTTGAAAA
1260124 AAAGATTTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 16 0.12
41 113 0.84
42 4 0.03
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:1260027 original size:20 final size:20
Alignment explanation
Indices: 1259961--1260074 Score: 93
Period size: 20 Copynumber: 5.6 Consensus size: 20
1259951 TAGTTGAAAA
*
1259961 TCGCGTTGCAATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** ** **
1259981 TCGTGTTGCGACAGTTGAAAA
1 TCGCGTTGCGA-TTTTCCATT
1260002 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
1260022 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
1260043 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
1260063 TCGCGTTGCGAT
1 TCGCGTTGCGAT
1260075 AGTCTACAAT
Statistics
Matches: 67, Mismatches: 25, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
20 39 0.58
21 28 0.42
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:1260204 original size:6 final size:6
Alignment explanation
Indices: 1260194--1260291 Score: 153
Period size: 6 Copynumber: 16.5 Consensus size: 6
1260184 GACACGTATT
* * *
1260194 ACCACT ACCACT ACCACT ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
*
1260242 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCCCG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1260289 ACC
1 ACC
1260292 CGAGACGGAC
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
5 5 0.06
6 85 0.94
ACGTcount: A:0.32, C:0.52, G:0.13, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:1260933 original size:22 final size:22
Alignment explanation
Indices: 1260897--1260971 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
1260887 AATTTGGAAA
1260897 ATCGCAACGAC-AACTGTAGACT
1 ATCGCAACG-CGAACTGTAGACT
**
1260919 ATCGCAACGCGAACTG--GAAA
1 ATCGCAACGCGAACTGTAGACT
* *
1260939 ATCGCAACGCG-ATTTTCA-ACT
1 ATCGCAACGCGAACTGT-AGACT
1260960 ATCGCAACGCGA
1 ATCGCAACGCGA
1260972 TTTTCAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
19 2 0.05
20 13 0.31
21 13 0.31
22 14 0.33
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (22 bp):
ATCGCAACGCGAACTGTAGACT
Found at i:1260944 original size:20 final size:20
Alignment explanation
Indices: 1260891--1260950 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 20
1260881 GCAACGAATT
1260891 TGGAAAATCGCAACGAC-AAC
1 TGGAAAATCGCAACG-CGAAC
**
1260911 TGTAGACTATCGCAACGCGAAC
1 TG--GAAAATCGCAACGCGAAC
1260933 TGGAAAATCGCAACGCGA
1 TGGAAAATCGCAACGCGA
1260951 TTTTCAACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 16 0.48
21 1 0.03
22 16 0.48
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.13
Consensus pattern (20 bp):
TGGAAAATCGCAACGCGAAC
Found at i:1260961 original size:41 final size:42
Alignment explanation
Indices: 1260870--1260971 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 42
1260860 AATCTTTTTT
*
1260870 TTTTAACTATCGCAA--CGAATTTGGAAAATCGCAACGACAA
1 TTTTAACTATCGCAACGCGAATCTGGAAAATCGCAACGACAA
* * *
1260910 CTGTAGACTATCGCAACGCGAA-CTGGAAAATCGCAACG-CGA
1 TTTTA-ACTATCGCAACGCGAATCTGGAAAATCGCAACGACAA
1260951 TTTTCAACTATCGCAACGCGA
1 TTTT-AACTATCGCAACGCGA
1260972 TTTTCAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 3 0.06
41 29 0.56
42 16 0.31
43 4 0.08
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
TTTTAACTATCGCAACGCGAATCTGGAAAATCGCAACGACAA
Found at i:1260965 original size:21 final size:21
Alignment explanation
Indices: 1260939--1260992 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
1260929 GAACTGGAAA
1260939 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
*
1260960 ATCGCAACGCGATTTTCAATT
1 ATCGCAACGCGATTTTCAACT
1260981 ATCGCAACGCGA
1 ATCGCAACGCGA
1260993 AATGCAACGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:1271576 original size:21 final size:20
Alignment explanation
Indices: 1271536--1271576 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1271526 GCTGAGCAGA
*
1271536 AAACTAAAAGTAAATATCTC
1 AAACTAAAACTAAATATCTC
*
1271556 AAACTAAAATCTAAATTTCTC
1 AAACTAAAA-CTAAATATCTC
1271577 TCCAAAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (20 bp):
AAACTAAAACTAAATATCTC
Found at i:1274895 original size:21 final size:21
Alignment explanation
Indices: 1274870--1274937 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
1274860 GATTCGCAAC
1274870 GCGATAGTCCAAGTTCGCGTT
1 GCGATAGTCCAAGTTCGCGTT
* *
1274891 ACGATTTATTCCAAGTT--CGTT
1 GCGA--TAGTCCAAGTTCGCGTT
*
1274912 GCGATAGTCGAAGTTCGCGTT
1 GCGATAGTCCAAGTTCGCGTT
1274933 GCGAT
1 GCGAT
1274938 TTATTCTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
19 9 0.24
21 19 0.50
23 10 0.26
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (21 bp):
GCGATAGTCCAAGTTCGCGTT
Found at i:1274907 original size:23 final size:23
Alignment explanation
Indices: 1274877--1274943 Score: 79
Period size: 21 Copynumber: 3.1 Consensus size: 23
1274867 AACGCGATAG
*
1274877 TCCAAGTTCGCGTTACGATTTAT
1 TCCAAGTTCGCGTTGCGATTTAT
*
1274900 TCCAAGTT--CGTTGCGA--TAG
1 TCCAAGTTCGCGTTGCGATTTAT
*
1274919 TCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGCGTTGCGATTTAT
1274942 TC
1 TC
1274944 TAAATTCGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
19 9 0.25
21 15 0.42
23 12 0.33
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.37
Consensus pattern (23 bp):
TCCAAGTTCGCGTTGCGATTTAT
Found at i:1274917 original size:42 final size:42
Alignment explanation
Indices: 1274870--1274965 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
1274860 GATTCGCAAC
*
1274870 GCGATAGTCCAAGTTCGCGTTACGATTTATTCCAAGTTCGTT
1 GCGATAGTCCAAGTTCGCGTTACGATTTATTCCAAATTCGTT
* * *
1274912 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAATTCGTT
1 GCGATAGTCCAAGTTCGCGTTACGATTTATTCCAAATTCGTT
1274954 GCGATAGTCCAA
1 GCGATAGTCCAA
1274966 AATCGCAACG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (42 bp):
GCGATAGTCCAAGTTCGCGTTACGATTTATTCCAAATTCGTT
Found at i:1275067 original size:6 final size:6
Alignment explanation
Indices: 1275056--1275088 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
1275046 GACACGTATT
*
1275056 ACCACG ACCACG ACCACG ATCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
1275089 CGAGACGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.33, C:0.48, G:0.15, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:1281047 original size:28 final size:29
Alignment explanation
Indices: 1281003--1281058 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
1280993 AAATTGTTAT
*
1281003 TGATTTTGGTGATCTAA-ATATTATATTA
1 TGATTTTAGTGATCTAATATATTATATTA
*
1281031 TGATTTTAAGTGA-CTAATTTATTATATT
1 TGATTTT-AGTGATCTAATATATTATATT
1281059 GAAATGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.32, C:0.04, G:0.12, T:0.52
Consensus pattern (29 bp):
TGATTTTAGTGATCTAATATATTATATTA
Found at i:1282713 original size:179 final size:180
Alignment explanation
Indices: 1282215--1282720 Score: 564
Period size: 180 Copynumber: 2.8 Consensus size: 180
1282205 CCAAATTAAG
* *
1282215 ATCATATAGTGACAAGTTTTGTAACTAAAAGTT-TTCG-TAATTATGACAGAAAAT-TTGTCACA
1 ATCATATAGTGACAAGTTTTGTAACTATAAGTTATT-GATAATTATTACA-AAAATATTGTCACA
* * * * *
1282277 ACAAATAATGAGATTTATATTTGTTGCGACAAATTTTGTTTGTAATTATATATTTTAATTATAGT
64 ACAAATAATGAGATTCAAATTT-TTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGT
* * * *
1282342 GACAAAATGTATAGTCATAAATGATTATCTCCAATTTTTGGTACAAAAACAAA
128 GACAAAATATATTGTCATAAATGATTACCTCCAATTTTTGGCACAAAAACAAA
* * * * * * *
1282395 ATCATATAGTGACACGTTTTGTAACTATAAGCTA-TAATTATTGTTACGAAAAAAATTGTCAAAA
1 ATCATATAGTGACAAGTTTTGTAACTATAAGTTATTGATAATTATTAC-AAAAATATTGTCACAA
**
1282459 CAAATAATGAGATTCAAATTTTTAGTGA-AAAAAATGTTTGTAGTTATATATTTTAATTATAGTG
65 CAAATAATGAGATTCAAATTTTT-GTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTG
* *
1282523 ACAAAATATATTGTCATAAA-GATTTACCTTCACATTTTTTGGCGC-AAAA-AAA
129 ACAAAATATATTGTCATAAATGA-TTACC-TC-CAATTTTTGGCACAAAAACAAA
* * * *
1282575 GTCATATAGTGACAAATTTTGTAACGATAA-TTATTGATAATTATTACAAAAATCATTGTTACAA
1 ATCATATAGTGACAAGTTTTGTAACTATAAGTTATTGATAATTATTACAAAAAT-ATTGTCACAA
* * * * *
1282639 -AAATAATGATATTCACATTTTTGTGACAAATTATATTTATAGTTATAAATTTTAATTATAGTGA
65 CAAATAATGAGATTCAAATTTTTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTGA
* *
1282703 TAACATATATTGTCATAA
130 CAAAATATATTGTCATAA
1282721 CTAGTTTTCT
Statistics
Matches: 273, Mismatches: 42, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
178 4 0.01
179 77 0.28
180 145 0.53
181 37 0.14
182 10 0.04
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.39
Consensus pattern (180 bp):
ATCATATAGTGACAAGTTTTGTAACTATAAGTTATTGATAATTATTACAAAAATATTGTCACAAC
AAATAATGAGATTCAAATTTTTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTGAC
AAAATATATTGTCATAAATGATTACCTCCAATTTTTGGCACAAAAACAAA
Found at i:1283950 original size:26 final size:26
Alignment explanation
Indices: 1283901--1283959 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
1283891 TTCACTTTTA
* * *
1283901 GTCATTATACTTTTTCAGCCGTCATT
1 GTCATTGTACTTTTTCAACCGTCACT
**
1283927 GTCATTGTACTTTTTCAATTGTCACT
1 GTCATTGTACTTTTTCAACCGTCACT
1283953 GTCATTG
1 GTCATTG
1283960 AATCATCATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (26 bp):
GTCATTGTACTTTTTCAACCGTCACT
Found at i:1285029 original size:2 final size:2
Alignment explanation
Indices: 1285022--1285073 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
1285012 AATAAAACTA
1285022 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1285064 AT AT AT AT AT
1 AT AT AT AT AT
1285074 TTCGAGTAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1289640 original size:3 final size:3
Alignment explanation
Indices: 1289632--1289656 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1289622 TTAAAGCCCT
1289632 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
1289657 ACTTTTCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:1307062 original size:75 final size:75
Alignment explanation
Indices: 1306932--1307233 Score: 577
Period size: 75 Copynumber: 4.0 Consensus size: 75
1306922 CCTGAGAAGG
*
1306932 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGCCTCAGTCTCCTCAA
1 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTCAGTCTCCTCAA
1306997 CTCAACAGAC
66 CTCAACAGAC
*
1307007 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGATGTCTCAGTCTCCTCAA
1 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTCAGTCTCCTCAA
1307072 CTCAACAGAC
66 CTCAACAGAC
1307082 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTCAGTCTCCTCAA
1 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTCAGTCTCCTCAA
1307147 CTCAACAGAC
66 CTCAACAGAC
*
1307157 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTGAGTCTCCTCAA
1 TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTCAGTCTCCTCAA
1307222 CTCAACAGAC
66 CTCAACAGAC
1307232 TT
1 TT
1307234 GGGTCAGTGC
Statistics
Matches: 223, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 223 1.00
ACGTcount: A:0.23, C:0.37, G:0.16, T:0.25
Consensus pattern (75 bp):
TTCCGGCCAGCCCACTTAGGGTACCACCTAGTCCTTCAAGATTCTCGACGTCTCAGTCTCCTCAA
CTCAACAGAC
Found at i:1312748 original size:7 final size:7
Alignment explanation
Indices: 1312736--1312768 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
1312726 AAGAGGAGTC
1312736 GAAGATA
1 GAAGATA
1312743 GAAGATA
1 GAAGATA
1312750 GAAGATA
1 GAAGATA
1312757 GAAGATA
1 GAAGATA
1312764 GAAGA
1 GAAGA
1312769 ATGAAGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.30, T:0.12
Consensus pattern (7 bp):
GAAGATA
Found at i:1313093 original size:15 final size:15
Alignment explanation
Indices: 1313073--1313108 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
1313063 ATTATACATT
1313073 TTTAAAATTATTTTA
1 TTTAAAATTATTTTA
1313088 TTTAAAA-TATTTTA
1 TTTAAAATTATTTTA
1313102 -TTAAAAT
1 TTTAAAAT
1313109 AATCAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 7 0.35
15 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTAAAATTATTTTA
Found at i:1313107 original size:13 final size:14
Alignment explanation
Indices: 1313073--1313109 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
1313063 ATTATACATT
1313073 TTTAAAATTATTTTA
1 TTTAAAA-TATTTTA
1313088 TTTAAAATATTTTA
1 TTTAAAATATTTTA
1313102 -TTAAAATA
1 TTTAAAATA
1313110 ATCAATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 8 0.36
14 7 0.32
15 7 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTTAAAATATTTTA
Found at i:1314428 original size:23 final size:23
Alignment explanation
Indices: 1314380--1314483 Score: 94
Period size: 21 Copynumber: 4.6 Consensus size: 23
1314370 CGATTTACAT
* *
1314380 ATTCGCATTGCGA--TAGTCCAA
1 ATTCGCGTTGCGATTTATTCCAA
*
1314401 GTTCGCGTTGCGATTTATTCCAA
1 ATTCGCGTTGCGATTTATTCCAA
1314424 ATT--CGTTGCGATTGATTTATTCCAA
1 ATTCGCGTTGC----GATTTATTCCAA
*
1314449 GTTCGCGTTGCGATTTATTCCAA
1 ATTCGCGTTGCGATTTATTCCAA
1314472 ATT--CGTTGCGAT
1 ATTCGCGTTGCGAT
1314484 AGTCCAAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
21 26 0.38
23 23 0.33
25 14 0.20
27 6 0.09
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (23 bp):
ATTCGCGTTGCGATTTATTCCAA
Found at i:1314445 original size:25 final size:26
Alignment explanation
Indices: 1314411--1314483 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 26
1314401 GTTCGCGTTG
1314411 CGATTTATTCCAAATTCGTTGCGATT
1 CGATTTATTCCAAATTCGTTGCGATT
*
1314437 -GATTTATTCCAAGTTC---GCG-TT
1 CGATTTATTCCAAATTCGTTGCGATT
1314458 GCGATTTATTCCAAATTCGTTGCGAT
1 -CGATTTATTCCAAATTCGTTGCGAT
1314484 AGTCCAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
21 2 0.05
22 3 0.08
23 15 0.38
25 15 0.38
26 3 0.08
27 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (26 bp):
CGATTTATTCCAAATTCGTTGCGATT
Found at i:1315216 original size:21 final size:21
Alignment explanation
Indices: 1315190--1315343 Score: 97
Period size: 21 Copynumber: 7.4 Consensus size: 21
1315180 GATTTACATA
1315190 TTCGCATTGCGATAATCCAAG
1 TTCGCATTGCGATAATCCAAG
* * *
1315211 TTCGCATTGCGATAGT-CGAC
1 TTCGCATTGCGATAATCCAAG
*
1315231 TATCGCATTGCGATTTAT--ATA-
1 T-TCGCATTGCGA-TAATCCA-AG
* * *
1315252 TTCGCATTGCGAT-AGCCGAC
1 TTCGCATTGCGATAATCCAAG
* *
1315272 TATCGCATTGCGAT-TTACATA-
1 T-TCGCATTGCGATAATCCA-AG
*
1315293 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAATCCAAG
* *
1315314 TTCGTATTGCGATAGTCCAAG
1 TTCGCATTGCGATAATCCAAG
*
1315335 TTCGTATTG
1 TTCGCATTG
1315344 TGAATCTGGA
Statistics
Matches: 108, Mismatches: 15, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
18 1 0.01
19 2 0.02
20 28 0.26
21 73 0.68
22 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (21 bp):
TTCGCATTGCGATAATCCAAG
Found at i:1315258 original size:20 final size:20
Alignment explanation
Indices: 1315180--1315305 Score: 98
Period size: 21 Copynumber: 6.2 Consensus size: 20
1315170 CAGTCGTTGT
1315180 GATTTACATATTCGCATTGC
1 GATTTACATATTCGCATTGC
* *
1315200 GATAATCCA-AGTTCGCATTGC
1 GAT-TTACATA-TTCGCATTGC
*
1315221 GATAGT-CGACTA-TCGCATTGC
1 GAT-TTAC-A-TATTCGCATTGC
*
1315242 GATTTATATATTCGCATTGC
1 GATTTACATATTCGCATTGC
***
1315262 GATAGCCGACTA-TCGCATTGC
1 GATTTAC-A-TATTCGCATTGC
1315283 GATTTACATATTCGCATTGC
1 GATTTACATATTCGCATTGC
1315303 GAT
1 GAT
1315306 AGTCCAAGTT
Statistics
Matches: 84, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
19 4 0.05
20 32 0.38
21 45 0.54
22 2 0.02
23 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (20 bp):
GATTTACATATTCGCATTGC
Found at i:1315263 original size:41 final size:41
Alignment explanation
Indices: 1315211--1315309 Score: 180
Period size: 41 Copynumber: 2.4 Consensus size: 41
1315201 ATAATCCAAG
*
1315211 TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTATATA
1 TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
*
1315252 TTCGCATTGCGATAGCCGACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
1315293 TTCGCATTGCGATAGTC
1 TTCGCATTGCGATAGTC
1315310 CAAGTTCGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (41 bp):
TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
Found at i:1315365 original size:103 final size:100
Alignment explanation
Indices: 1315180--1315386 Score: 222
Period size: 103 Copynumber: 2.0 Consensus size: 100
1315170 CAGTCGTTGT
*
1315180 GATTTACATATTCGCATTGCGATAATCCAAGTTCGCATTGCGATAGTCGACTATCGCATTGCGAT
1 GATTTACATATTCGCATTGCGATAATCCAAGTTCGCATTGCGATAGTCAACTATCGCATTGCGAT
* * * *
1315245 TTATATATTCGCATTGCGATAGCC-GACTATCGCATTGC
66 CTAGAAATT--CATTGCGATA-CCGGA-GATCGCATTGC
* * * * *
1315283 GATTTACATATTCGCATTGCGATAGTCCAAGTTCGTATTGCGATAGTCCAAGT-TCGTATTGTGA
1 GATTTACATATTCGCATTGCGATAATCCAAGTTCGCATTGCGATAGT-CAACTATCGCATTGCG-
*
1315347 ATCTGGAAACTT-ATTTGCGATACCGGAGATCGCATTGC
64 ATCTAGAAA-TTCA-TTGCGATACCGGAGATCGCATTGC
1315385 GA
1 GA
1315387 ATTATCGATC
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
102 15 0.17
103 63 0.72
104 8 0.09
105 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (100 bp):
GATTTACATATTCGCATTGCGATAATCCAAGTTCGCATTGCGATAGTCAACTATCGCATTGCGAT
CTAGAAATTCATTGCGATACCGGAGATCGCATTGC
Found at i:1318582 original size:61 final size:61
Alignment explanation
Indices: 1318487--1318609 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 61
1318477 AGTGTTAAAA
1318487 AGCATATAGATTATAAAATCAAGGTTCGTGAAATGAGAAGGGTTAATGAAGATGGTGAAAG
1 AGCATATAGATTATAAAATCAAGGTTCGTGAAATGAGAAGGGTTAATGAAGATGGTGAAAG
**
1318548 AGCATATAGATTATAAAATCAAGGTTCGTGAAATGAGAAGGGTTTTTGAAGATGGTGAAAG
1 AGCATATAGATTATAAAATCAAGGTTCGTGAAATGAGAAGGGTTAATGAAGATGGTGAAAG
1318609 A
1 A
1318610 ATTCATGGAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.41, C:0.05, G:0.28, T:0.26
Consensus pattern (61 bp):
AGCATATAGATTATAAAATCAAGGTTCGTGAAATGAGAAGGGTTAATGAAGATGGTGAAAG
Found at i:1321115 original size:6 final size:6
Alignment explanation
Indices: 1321104--1321138 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
1321094 AGTGGATATC
1321104 CCATAG CCATAG CCATAG CCATAG CCATAG CCATA
1 CCATAG CCATAG CCATAG CCATAG CCATAG CCATA
1321139 CTTGTAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.34, G:0.14, T:0.17
Consensus pattern (6 bp):
CCATAG
Found at i:1321762 original size:5 final size:5
Alignment explanation
Indices: 1321752--1321959 Score: 388
Period size: 5 Copynumber: 42.4 Consensus size: 5
1321742 AAAGTTCCTT
1321752 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1321802 TTATA TTATA TTATA TTATA TTATA -TATA TTATA TTATA -TATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1321850 TTATA TTATA -T-TA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1321898 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1321948 TTATA TTATA TT
1 TTATA TTATA TT
1321960 GATGAATACT
Statistics
Matches: 199, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
3 2 0.01
4 10 0.05
5 187 0.94
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:1339764 original size:39 final size:38
Alignment explanation
Indices: 1339703--1339780 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 38
1339693 CATTAACGTT
*
1339703 AAATTTTGAACATAGATACTAAAATGACACAAAAACTA
1 AAATTTTGAACATAGATACTAAAATGAAACAAAAACTA
* *
1339741 AAATTTTTAACGATATG-TACTAAAATGAAATAAAAACTA
1 AAATTTTGAAC-ATA-GATACTAAAATGAAACAAAAACTA
1339780 A
1 A
1339781 GTTTTAGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
38 10 0.29
39 24 0.69
40 1 0.03
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (38 bp):
AAATTTTGAACATAGATACTAAAATGAAACAAAAACTA
Found at i:1344702 original size:41 final size:41
Alignment explanation
Indices: 1344655--1344953 Score: 456
Period size: 41 Copynumber: 7.1 Consensus size: 41
1344645 ATTCGCGTTG
1344655 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1344696 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1344737 CATTTCGCGTTGCGATAGTTGAAAATCGCAATTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTG--AA----AA-TCGCGTTGCGATTTTC
* * *
1344785 CATTTCGTGTTGCGATAGTTGAAATTCGCGTTTCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1344826 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
* *
1344867 CATTTCGCGTTGCGATAGTCT-ACAGTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGT-TGAAAATCGCGTTGCGATTTTC
* *
1344908 CATTTCGCGTTGCGATAGTTGAAATTCGCGTAGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1344949 CATTT
1 CATTT
1344954 GCGATAGTCT
Statistics
Matches: 238, Mismatches: 11, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
40 1 0.00
41 193 0.81
42 2 0.01
43 2 0.01
46 2 0.01
47 2 0.01
48 36 0.15
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:1345001 original size:41 final size:40
Alignment explanation
Indices: 1344771--1345002 Score: 162
Period size: 41 Copynumber: 5.8 Consensus size: 40
1344761 ATCGCAATTC
* * *
1344771 GCGTTGCGATTTTCCATTTCGTGTTGCGATAGT-TGA-AATT
1 GCGTTGCGATTTTCCAATTC-CGTTGCGATAGTCT-ACAGTT
* * * * *
1344811 CGCGTTTCGATTTTCCATTTCGCGTTGCGATAGT-TGAAAATC
1 -GCGTTGCGATTTTCCAATTC-CGTTGCGATAGTCT-ACAGTT
* *
1344853 GCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTC
1 GCGTTGCGATTTTCCAATTC-CGTTGCGATAGTCTACAGTT
* *
1344894 GCGTTGCGATTTTCCATTTCGCGTTGCGATAGT-TGA-AATT
1 GCGTTGCGATTTTCCAATTC-CGTTGCGATAGTCT-ACAGTT
*
1344934 CGCGTAGCGATTTTCC-A-T---TTGCGATAGTCTACAGTT
1 -GCGTTGCGATTTTCCAATTCCGTTGCGATAGTCTACAGTT
*
1344970 GTCGTTGCGATTTTCCAAATT-CGTTGTGATAGT
1 G-CGTTGCGATTTTCC-AATTCCGTTGCGATAGT
1345003 TAAAAAAAAA
Statistics
Matches: 166, Mismatches: 13, Indels: 24
0.82 0.06 0.12
Matches are distributed among these distances:
35 12 0.07
36 17 0.10
38 1 0.01
39 2 0.01
40 3 0.02
41 127 0.77
42 4 0.02
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.39
Consensus pattern (40 bp):
GCGTTGCGATTTTCCAATTCCGTTGCGATAGTCTACAGTT
Found at i:1345002 original size:76 final size:77
Alignment explanation
Indices: 1344769--1345008 Score: 236
Period size: 82 Copynumber: 3.0 Consensus size: 77
1344759 AAATCGCAAT
* * * * *
1344769 TCGCGTTGCGATTTTCCATTTCGTGTTGCGATAGT-TGAAATTCGCGTTTCGATTTTCCATTTCG
1 TCGCGTAGCGATTTTCCA-TTC---TTGCGATAGTCT-ACAGTCGCGTTGCGATTTTCCAATTC-
1344833 CGTTGCGATAGTTGAAAA
60 CGTTGCGATAGTTGAAAA
* *
1344851 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTCGCGTTGCGATTTTCCATTTCGC
1 TCGCGTAGCGATTTTCCA-TT--C-TTGCGATAGTCTACAGTCGCGTTGCGATTTTCCAATTC-C
*
1344916 GTTGCGATAGTTGAAAT
61 GTTGCGATAGTTGAAAA
*
1344933 TCGCGTAGCGATTTTCCA-T-TTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATT-CGTT
1 TCGCGTAGCGATTTTCCATTCTTGCGATAGTCTACAGTCG-CGTTGCGATTTTCC-AATTCCGTT
* *
1344995 GTGATAGTTAAAAA
64 GCGATAGTTGAAAA
1345009 AAAAGATTTT
Statistics
Matches: 143, Mismatches: 10, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
76 33 0.23
77 14 0.10
78 3 0.02
80 1 0.01
82 90 0.63
83 1 0.01
84 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (77 bp):
TCGCGTAGCGATTTTCCATTCTTGCGATAGTCTACAGTCGCGTTGCGATTTTCCAATTCCGTTGC
GATAGTTGAAAA
Found at i:1345622 original size:6 final size:6
Alignment explanation
Indices: 1345611--1345675 Score: 112
Period size: 6 Copynumber: 10.5 Consensus size: 6
1345601 GTCCGTCTCG
1345611 GGTCGT GGTCGT GGTCGTGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTC--GT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1345661 GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGT
1345676 AATACGTGTC
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
6 51 0.89
8 6 0.11
ACGTcount: A:0.00, C:0.15, G:0.51, T:0.34
Consensus pattern (6 bp):
GGTCGT
Found at i:1345925 original size:41 final size:41
Alignment explanation
Indices: 1345867--1345953 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
1345857 GCGATTTCAA
*
1345867 AAATGGAAAATCGCAACGCGA-TCTCTAACTATCGCAACGCG
1 AAATGGAAAAACGCAACGCGATTCTC-AACTATCGCAACGCG
* * *
1345908 AAATGGAAAAACTCAACGCGATTTTCAACTATCGCAATGCG
1 AAATGGAAAAACGCAACGCGATTCTCAACTATCGCAACGCG
1345949 AAATG
1 AAATG
1345954 CAACGTGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 38 0.93
42 3 0.07
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (41 bp):
AAATGGAAAAACGCAACGCGATTCTCAACTATCGCAACGCG
Found at i:1346496 original size:20 final size:20
Alignment explanation
Indices: 1346441--1346497 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
1346431 AATACTTTTC
*
1346441 AAGAGTTTCGAAACTATCTT
1 AAGAGTTTCGAAACTTTCTT
*
1346461 AAGAGTTCCGAAACTTTCCTT
1 AAGAGTTTCGAAACTTT-CTT
*
1346482 AA-AGTTTCAAAACTTT
1 AAGAGTTTCGAAACTTT
1346498 TGTGTGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 27 0.84
21 5 0.16
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (20 bp):
AAGAGTTTCGAAACTTTCTT
Found at i:1347585 original size:30 final size:30
Alignment explanation
Indices: 1347520--1347599 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
1347510 TATAGTTTTG
* * * *
1347520 AAAAATTGAAAGTTAGTTATCAAAACATAT
1 AAAAATTGATAGTTAGATATCAAAACAGAC
* *
1347550 TAAAATTGATAGTTAGATATCAAATCAGAC
1 AAAAATTGATAGTTAGATATCAAAACAGAC
1347580 AAAAATTGATAGTTTAGATA
1 AAAAATTGATAG-TTAGATA
1347600 CTAAACATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 35 0.83
31 7 0.17
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (30 bp):
AAAAATTGATAGTTAGATATCAAAACAGAC
Found at i:1357022 original size:3 final size:3
Alignment explanation
Indices: 1357014--1357069 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
1357004 TTTTTACCCA
*
1357014 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1357062 TAT TAT TA
1 TAT TAT TA
1357070 AATATATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:1357096 original size:14 final size:15
Alignment explanation
Indices: 1357068--1357102 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
1357058 TTATTATTAT
1357068 TAAATATATATTAAA
1 TAAATATATATTAAA
*
1357083 TAAATCTATA-TAAA
1 TAAATATATATTAAA
1357097 TAAATA
1 TAAATA
1357103 ATTACAGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATATATATTAAA
Found at i:1357593 original size:15 final size:15
Alignment explanation
Indices: 1357573--1357614 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
1357563 GGAGAGATAC
1357573 AAAGAAACAG-AAAAG
1 AAAGAAA-AGAAAAAG
1357588 AAAGAAAAGAAAAAG
1 AAAGAAAAGAAAAAG
*
1357603 AAAGAAGAGAAA
1 AAAGAAAAGAAA
1357615 CTTACTGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 2 0.08
15 23 0.92
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAG
Found at i:1357598 original size:20 final size:20
Alignment explanation
Indices: 1357573--1357614 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1357563 GGAGAGATAC
*
1357573 AAAGAAACAGAAAAGAA-AGA
1 AAAGAAAAAG-AAAGAAGAGA
1357593 AAAGAAAAAGAAAGAAGAGA
1 AAAGAAAAAGAAAGAAGAGA
1357613 AA
1 AA
1357615 CTTACTGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAGAAAGAAGAGA
Found at i:1369869 original size:9 final size:9
Alignment explanation
Indices: 1369855--1369928 Score: 64
Period size: 9 Copynumber: 8.3 Consensus size: 9
1369845 ATTATGCTTG
1369855 AAGAAAAGA
1 AAGAAAAGA
1369864 AAGAAAAAGAA
1 AAG-AAAAG-A
*
1369875 AAAAAAAGA
1 AAGAAAAGA
*
1369884 AAAAAAAGA
1 AAGAAAAGA
*
1369893 AAAAAAAGA
1 AAGAAAAGA
1369902 AA-AAAAGA
1 AAGAAAAGA
*
1369910 GA-AAAAG-
1 AAGAAAAGA
*
1369917 AAGAAAAAA
1 AAGAAAAGA
1369926 AAG
1 AAG
1369929 GGGGTCAAGG
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
7 1 0.02
8 16 0.28
9 27 0.47
10 10 0.18
11 3 0.05
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAGAAAAGA
Found at i:1369877 original size:1 final size:1
Alignment explanation
Indices: 1369867--1369927 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
1369857 GAAAAGAAAG
* * * * * * * *
1369867 AAAAAGAAAAAAAAAGAAAAAAAAGAAAAAAAAGAAAAAAAGAGAAAAAGAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1369928 GGGGGTCAAG
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (1 bp):
A
Found at i:1369889 original size:19 final size:19
Alignment explanation
Indices: 1369858--1369928 Score: 101
Period size: 20 Copynumber: 3.7 Consensus size: 19
1369848 ATGCTTGAAG
1369858 AAAAGAAAGAAAAAGAAAAA
1 AAAAGAAA-AAAAAGAAAAA
1369878 AAAAGAAAAAAAAG-AAAA
1 AAAAGAAAAAAAAGAAAAA
1369896 AAAAG-AAAAAAAGAGAAAA
1 AAAAGAAAAAAAAGA-AAAA
*
1369915 AGAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
1369929 GGGGTCAAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
17 8 0.17
18 9 0.19
19 14 0.30
20 16 0.34
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAAAAGAAAAA
Found at i:1369899 original size:28 final size:28
Alignment explanation
Indices: 1369858--1369928 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
1369848 ATGCTTGAAG
1369858 AAAAGAAAGAAAAAGAAAAAAAAAGAAAA
1 AAAAGAAA-AAAAAGAAAAAAAAAGAAAA
*
1369887 AAAAGAAAAAAAAGAAAAAAAGAGAAAA
1 AAAAGAAAAAAAAGAAAAAAAAAGAAAA
*
1369915 AGAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
1369929 GGGGTCAAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 32 0.80
29 8 0.20
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (28 bp):
AAAAGAAAAAAAAGAAAAAAAAAGAAAA
Found at i:1370265 original size:16 final size:16
Alignment explanation
Indices: 1370244--1370283 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
1370234 ATACAATTCT
1370244 ATTTATTTCA-AGTTCA
1 ATTTATTTCAGAG-TCA
*
1370260 ATTTATTTGAGAGTCA
1 ATTTATTTCAGAGTCA
1370276 ATTTATTT
1 ATTTATTT
1370284 TTGGAAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (16 bp):
ATTTATTTCAGAGTCA
Found at i:1371260 original size:82 final size:83
Alignment explanation
Indices: 1371078--1371695 Score: 1000
Period size: 83 Copynumber: 7.5 Consensus size: 83
1371068 AAATTTGCCA
1371078 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGTT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGTT
1371143 TGGAAGATGAATGTGTTC
66 TGGAAGATGAATGTGTTC
1371161 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAGAA-CAATCATTGAGT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAGAACCAATCATTGAGT
1371224 TTGGAAGATGAATGTGTTC
65 TTGGAAGATGAATGTGTTC
*
1371243 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAG-TTGGACAGAA-CAATCATTGAGT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAGAACCAATCATTGAGT
1371306 TTGGAAGATGAATGTGTTC
65 TTGGAAGATGAATGTGTTC
1371325 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAGAA-CAATCATTGAGT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAGAACCAATCATTGAGT
1371388 TTGGAAGATGAATGTGTTC
65 TTGGAAGATGAATGTGTTC
* *
1371407 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCAGTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGTT
* * *
1371472 TAGAAGATGAATTTG-CC
66 TGGAAGATGAATGTGTTC
* *
1371489 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCAGTGAAT
1 -ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGT
* * *
1371554 TTAGAAGATGAATTTG-CC
65 TTGGAAGATGAATGTGTTC
*
1371572 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
1 -ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGT
** *
1371637 TCAGAACATGAATGTGTTC
65 TTGGAAGATGAATGTGTTC
1371656 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1371696 ATTCAGTAGG
Statistics
Matches: 518, Mismatches: 12, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
82 244 0.47
83 273 0.53
84 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.37
Consensus pattern (83 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGTT
TGGAAGATGAATGTGTTC
Found at i:1371350 original size:164 final size:165
Alignment explanation
Indices: 1371078--1371695 Score: 1021
Period size: 164 Copynumber: 3.7 Consensus size: 165
1371068 AAATTTGCCA
*
1371078 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAGTT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
*
1371143 TGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
66 TAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
1371208 AGAACAATCATTGAGTTTGGAAGATGAATGTGTTC
131 AGAACAATCATTGAGTTTGGAAGATGAATGTGTTC
* *
1371243 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAG-TTGGACAGAA-CAATCATTGAGT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAGAACCAATCATTGAAT
*
1371306 TTGGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
65 TTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
1371371 CAGAACAATCATTGAGTTTGGAAGATGAATGTGTTC
130 CAGAACAATCATTGAGTTTGGAAGATGAATGTGTTC
*
1371407 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCAGTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
* *
1371472 TAGAAGATGAATTTG-CCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
66 TAGAAGATGAATGTGTTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGG
* * * * *
1371536 -CAGAACCAATCAGTGAATTTAGAAGATGAATTTG-CC
129 ACAGAA-CAATCATTGAGTTTGGAAGATGAATGTGTTC
1371572 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
1 -ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
* *
1371637 TCAGAACATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
65 TTAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1371696 ATTCAGTAGG
Statistics
Matches: 428, Mismatches: 17, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
164 163 0.38
165 120 0.28
166 144 0.34
167 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.37
Consensus pattern (165 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
TAGAAGATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
AGAACAATCATTGAGTTTGGAAGATGAATGTGTTC
Found at i:1372545 original size:114 final size:114
Alignment explanation
Indices: 1372345--1373197 Score: 1315
Period size: 114 Copynumber: 7.5 Consensus size: 114
1372335 GAAAGATCAG
1372345 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1372410 GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
66 GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
1372459 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
*
1372524 GAAGAATTTGTTCAACCTTTTACCTGAATCCATCAAATTGATGGATTAT
66 GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
1372573 CTTTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
* * * * *
1372637 GAAGAACTTGTTCAACCTTTTACCTGAATCCATC-ATTTGATGGATCAG
66 GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
1372685 CTTTTCCAGAGAAAGTTCATAAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
1 CTTTTCCAGAGAAAGTTCAT-AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
**
1372750 AGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCAAATTGATGGATTAT
65 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
1372800 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
**
1372865 GAAGAATTTGTTCAACCTTTTTTTCTGAATTCATCAAATTGATGGATTAT
66 GAAGAATTTGTTCAACC-TTTTACCTGAATTCATCAAATTGATGGATTAT
*
1372915 CTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
* * * * * *
1372980 GAAGAACTTGTTCAATCTTTTGCTTGAATTCATC--ATTGGATGGATCAA
66 GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATT-GATGGATTAT
* * *
1373028 CATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATA
1 CTTTTCCAGAG-AAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATA
* * * * * *
1373092 ATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTCATC-ATTTGATGGATCAT
62 ATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
* ** *
1373144 CATCCCCAGCAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAG-AGAAGAA
1 CTTTTCCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA
1373198 TTTATTCAAT
Statistics
Matches: 697, Mismatches: 30, Indels: 25
0.93 0.04 0.03
Matches are distributed among these distances:
112 26 0.04
113 134 0.19
114 288 0.41
115 144 0.21
116 83 0.12
117 21 0.03
118 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (114 bp):
CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTAT
Found at i:1372752 original size:227 final size:228
Alignment explanation
Indices: 1372345--1373197 Score: 1315
Period size: 227 Copynumber: 3.7 Consensus size: 228
1372335 GAAAGATCAG
1372345 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
* *
1372410 GAAGAATTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAAGT
66 GAAGAACTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATCATCTTTTCCAGAGAAAGT
1372475 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAC
131 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAC
*
1372540 CTTTTACCTGAATCCATCAAATTGATGGATTAT
196 CTTTTACCTGAATTCATCAAATTGATGGATTAT
1372573 CTTTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
* * *
1372637 GAAGAACTTGTTCAACCTTTTACCTGAATCCATC-ATTTGATGGATCAGCTTTTCCAGAGAAAGT
66 GAAGAACTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATCATCTTTTCCAGAGAAAGT
1372701 TCATAAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA
131 TCAT-AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA
**
1372766 CCTTTTTTCTGAATTCATCAAATTGATGGATTAT
195 CCTTTTACCTGAATTCATCAAATTGATGGATTAT
1372800 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
* ** * *
1372865 GAAGAATTTGTTCAACCTTTTTTTCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAGG
66 GAAGAACTTGTTCAACC-TTTTACCTGAATTCATCAAATTGATGGATCATCTTTTCCAGAGAAAG
*
1372930 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
130 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA
* * * * *
1372995 TCTTTTGCTTGAATTCATC--ATTGGATGGATCAA
195 CCTTTTACCTGAATTCATCAAATT-GATGGATTAT
* * *
1373028 CATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATA
1 CTTTTCCAGAG-AAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATA
* * * * * **
1373092 ATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTCATC-ATTTGATGGATCATCATCCCCAGCAG
62 ATGAGAAGAACTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATCATCTTTTCCAG-AG
*
1373156 AAAGTTCATAATGAGAAGAACTCATCTGAAGAAAG-AGAAGAA
126 AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA
1373198 TTTATTCAAT
Statistics
Matches: 577, Mismatches: 38, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
226 31 0.05
227 191 0.33
228 114 0.20
229 113 0.20
230 80 0.14
231 48 0.08
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (228 bp):
CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
GAAGAACTTGTTCAACCTTTTACCTGAATTCATCAAATTGATGGATCATCTTTTCCAGAGAAAGT
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAC
CTTTTACCTGAATTCATCAAATTGATGGATTAT
Found at i:1373341 original size:3 final size:3
Alignment explanation
Indices: 1373333--1373391 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
1373323 TTTTTACCCA
1373333 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1373381 TAT TAT TAT TA
1 TAT TAT TAT TA
1373392 AATATATATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:1373418 original size:14 final size:15
Alignment explanation
Indices: 1373390--1373424 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
1373380 TTATTATTAT
1373390 TAAATATATATTAAA
1 TAAATATATATTAAA
*
1373405 TAAATCTATA-TAAA
1 TAAATATATATTAAA
1373419 TAAATA
1 TAAATA
1373425 ATTACAGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATATATATTAAA
Found at i:1373915 original size:15 final size:15
Alignment explanation
Indices: 1373895--1373936 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
1373885 GGAGAGATAC
1373895 AAAGAAACAG-AAAAG
1 AAAGAAA-AGAAAAAG
1373910 AAAGAAAAGAAAAAG
1 AAAGAAAAGAAAAAG
*
1373925 AAAGAAGAGAAA
1 AAAGAAAAGAAA
1373937 CTTACTGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 2 0.08
15 23 0.92
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAG
Found at i:1373920 original size:20 final size:20
Alignment explanation
Indices: 1373895--1373936 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1373885 GGAGAGATAC
*
1373895 AAAGAAACAGAAAAGAA-AGA
1 AAAGAAAAAG-AAAGAAGAGA
1373915 AAAGAAAAAGAAAGAAGAGA
1 AAAGAAAAAGAAAGAAGAGA
1373935 AA
1 AA
1373937 CTTACTGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAGAAAGAAGAGA
Found at i:1379392 original size:10 final size:10
Alignment explanation
Indices: 1379377--1379402 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1379367 TTTGCCTCTT
1379377 TTCTTGGAGG
1 TTCTTGGAGG
1379387 TTCTTGGAGG
1 TTCTTGGAGG
1379397 TTCTTG
1 TTCTTG
1379403 CCCTTCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.35, T:0.46
Consensus pattern (10 bp):
TTCTTGGAGG
Found at i:1388661 original size:12 final size:12
Alignment explanation
Indices: 1388639--1388676 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
1388629 ACATTATAAC
1388639 ATAAA-AAATAT
1 ATAAATAAATAT
1388650 ATAAATAAATAT
1 ATAAATAAATAT
* *
1388662 ATATATATATAT
1 ATAAATAAATAT
1388674 ATA
1 ATA
1388677 TAAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAAATAAATAT
Found at i:1390946 original size:20 final size:19
Alignment explanation
Indices: 1390926--1391031 Score: 86
Period size: 20 Copynumber: 5.3 Consensus size: 19
1390916 AAATCGTAAT
*
1390926 GCGATACTGACTATCGCAAT
1 GCGATACT-ACTATCGCAAC
* *
1390946 GCGATAATACAAATCGCAAC
1 GCGATACTAC-TATCGCAAC
* *
1390966 GAGATACTTACTTTCGCAAC
1 GCGATAC-TACTATCGCAAC
*
1390986 GCGATACTGACTTTCGCAAC
1 GCGATACT-ACTATCGCAAC
* *
1391006 GCGATAATACATAATCGCAAT
1 GCGATACTAC-T-ATCGCAAC
1391027 GCGAT
1 GCGAT
1391032 TTTCAAAGCG
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
19 5 0.07
20 51 0.73
21 14 0.20
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (19 bp):
GCGATACTACTATCGCAAC
Found at i:1399419 original size:22 final size:22
Alignment explanation
Indices: 1399378--1399444 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
1399368 CTCGTATAAA
1399378 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
1399401 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
1399423 TGCACCGTAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1399445 GATGTCCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 31 0.72
23 12 0.28
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:1401165 original size:21 final size:21
Alignment explanation
Indices: 1401141--1401185 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1401131 TCTTGTTCGT
* *
1401141 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
1401162 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
1401183 TTG
1 TTG
1401186 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:1402204 original size:13 final size:13
Alignment explanation
Indices: 1402186--1402211 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1402176 TTTTGGACAT
1402186 GGTGCTAGATCAA
1 GGTGCTAGATCAA
1402199 GGTGCTAGATCAA
1 GGTGCTAGATCAA
1402212 ATATTTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
GGTGCTAGATCAA
Found at i:1406825 original size:20 final size:20
Alignment explanation
Indices: 1406796--1406845 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
1406786 TTGACCAGAA
*
1406796 GTTTCAAAACCTAAACAAGT
1 GTTTCGAAACCTAAACAAGT
* **
1406816 GTTTCGAAACTTCTACAAGT
1 GTTTCGAAACCTAAACAAGT
*
1406836 GTTTTGAAAC
1 GTTTCGAAAC
1406846 TTTCCAATAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (20 bp):
GTTTCGAAACCTAAACAAGT
Found at i:1406846 original size:20 final size:20
Alignment explanation
Indices: 1406810--1406847 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1406800 CAAAACCTAA
1406810 ACAAGTGTTTCGAAACTTCT
1 ACAAGTGTTTCGAAACTTCT
*
1406830 ACAAGTGTTTTGAAACTT
1 ACAAGTGTTTCGAAACTT
1406848 TCCAATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (20 bp):
ACAAGTGTTTCGAAACTTCT
Found at i:1421892 original size:2 final size:2
Alignment explanation
Indices: 1421885--1421918 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1421875 AGTTAGTGTC
1421885 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1421919 TTGCTCTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1424863 original size:2 final size:2
Alignment explanation
Indices: 1424856--1424903 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
1424846 TGAGCATGCA
*
1424856 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1424897 AT -T AT AT
1 AT AT AT AT
1424904 TATCAAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:1427944 original size:2 final size:2
Alignment explanation
Indices: 1427937--1427975 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
1427927 GTTTAAAATA
1427937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
1427976 TCGTCTTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1428794 original size:60 final size:59
Alignment explanation
Indices: 1428701--1428873 Score: 199
Period size: 60 Copynumber: 2.9 Consensus size: 59
1428691 GGGCTTCTTC
* * *
1428701 AAATTATGACAATCATTCTAAATTGATTCTTAAATTTTTAAATATTTTAATTTGATCACT
1 AAATTATGACTATCATTCTAAATTGATCCTTAAATTTTTAAATATTTCAATTT-ATCACT
* * *
1428761 AAATTATGACTATCATTCTAAATTTG-TCCTTAAACTTTTAAATATTTCAGTTTATCCCT
1 AAATTATGACTATCATTCTAAA-TTGATCCTTAAATTTTTAAATATTTCAATTTATCACT
* * *
1428820 AAAGTATGA-TATTTATTATAAATTGATCCTTAAACTTTTTGAAA-ATTTCAATTT
1 AAATTATGACTA-TCATTCTAAATTGATCCTTAAA-TTTTT-AAATATTTCAATTT
1428874 CCCAAATATA
Statistics
Matches: 97, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
58 5 0.05
59 29 0.30
60 57 0.59
61 6 0.06
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (59 bp):
AAATTATGACTATCATTCTAAATTGATCCTTAAATTTTTAAATATTTCAATTTATCACT
Found at i:1429086 original size:60 final size:59
Alignment explanation
Indices: 1429022--1429154 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 59
1429012 TTTGGGGACC
* ** *
1429022 AATTTTGAATGAGAATCATAGTTTG-GGTATAAAATTGGAATTTTCAAAAGTTTAAGGATT
1 AATTTTGAATGAGAATCATAGGTTGAGG-ATAAAATTAAAATATTCAAAAGTTTAAGGA-T
* * * * *
1429082 AATTTAGAACGATAATCTTAGGTTGAGGATGAAATTAAAATATTCAAAAGTTTAAGGAT
1 AATTTTGAATGAGAATCATAGGTTGAGGATAAAATTAAAATATTCAAAAGTTTAAGGAT
*
1429141 CATTTTAGAATGAG
1 AATTTT-GAATGAG
1429155 GGTAATAATT
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
59 5 0.09
60 51 0.88
61 2 0.03
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.35
Consensus pattern (59 bp):
AATTTTGAATGAGAATCATAGGTTGAGGATAAAATTAAAATATTCAAAAGTTTAAGGAT
Found at i:1443344 original size:21 final size:19
Alignment explanation
Indices: 1443299--1443352 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
1443289 TTGAGTATAA
*
1443299 AATAATGATTTAAAATAATT
1 AATAAT-ATTTAAAATAATC
*
1443319 AATAAATTATTTAAAATCATC
1 AAT-AA-TATTTAAAATAATC
*
1443340 CATAATATTTAAA
1 AATAATATTTAAA
1443353 TTTCAAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 8 0.28
20 5 0.17
21 15 0.52
22 1 0.03
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.39
Consensus pattern (19 bp):
AATAATATTTAAAATAATC
Found at i:1443610 original size:9 final size:9
Alignment explanation
Indices: 1443598--1443627 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
1443588 CAAAATAATC
1443598 AAAAAATAA
1 AAAAAATAA
1443607 AAAAAATAA
1 AAAAAATAA
*
1443616 ATAAAATAA
1 AAAAAATAA
1443625 AAA
1 AAA
1443628 TTAAATCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAATAA
Found at i:1455171 original size:20 final size:20
Alignment explanation
Indices: 1455133--1455171 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1455123 TTTAAATTGA
*
1455133 ATTAAAGTAAATTTTAAAAT
1 ATTAAAGTAAATTTGAAAAT
* *
1455153 ATTAAATTAAGTTTGAAAA
1 ATTAAAGTAAATTTGAAAA
1455172 CGTGTAAACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (20 bp):
ATTAAAGTAAATTTGAAAAT
Found at i:1466509 original size:21 final size:22
Alignment explanation
Indices: 1466476--1466531 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 22
1466466 TAACTTAAAA
** *
1466476 CTCTAAATTATAAACCCTAAAC
1 CTCTAAACAATAAACCCCAAAC
* *
1466498 C-CTAAACCAT-AACCCCATAC
1 CTCTAAACAATAAACCCCAAAC
1466518 CTCTAAACAATAAA
1 CTCTAAACAATAAA
1466532 TCATAACCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 9 0.33
21 15 0.56
22 3 0.11
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (22 bp):
CTCTAAACAATAAACCCCAAAC
Found at i:1469038 original size:16 final size:17
Alignment explanation
Indices: 1469017--1469049 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1469007 ATTTTTATTG
1469017 AATAAAAATATT-TTTC
1 AATAAAAATATTATTTC
*
1469033 AATAAATATATTATTTC
1 AATAAAAATATTATTTC
1469050 GGATCGGTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
AATAAAAATATTATTTC
Found at i:1469258 original size:7 final size:8
Alignment explanation
Indices: 1469236--1469272 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
1469226 CACACACGCA
*
1469236 CACGCGCA
1 CACGCGCG
1469244 CACGCGCG
1 CACGCGCG
1469252 C-CGCGCG
1 CACGCGCG
1469259 CACGC-CG
1 CACGCGCG
1469266 CACGCGC
1 CACGCGC
1469273 ACGCAAACGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
7 14 0.54
8 12 0.46
ACGTcount: A:0.14, C:0.54, G:0.32, T:0.00
Consensus pattern (8 bp):
CACGCGCG
Found at i:1469283 original size:10 final size:12
Alignment explanation
Indices: 1469270--1469833 Score: 477
Period size: 12 Copynumber: 47.9 Consensus size: 12
1469260 ACGCCGCACG
1469270 CGCACGCA-A-A
1 CGCACGCACACA
*
1469280 CGCACACACACA
1 CGCACGCACACA
*
1469292 CACACGCACACA
1 CGCACGCACACA
*
1469304 CGCACGCACACG
1 CGCACGCACACA
* *
1469316 CACACGCGCACA
1 CGCACGCACACA
1469328 CGCACACGCACACA
1 CG--CACGCACACA
* *
1469342 CACACGCACACG
1 CGCACGCACACA
* *
1469354 CACACGCACACG
1 CGCACGCACACA
1469366 CG-A--CACACA
1 CGCACGCACACA
*
1469375 CGCACACGACACA
1 CGCACGC-ACACA
*
1469388 CGCACACACACA
1 CGCACGCACACA
*
1469400 C-CACACACACA
1 CGCACGCACACA
* *
1469411 CGCACACACACG
1 CGCACGCACACA
1469423 CGCACGCACACA
1 CGCACGCACACA
*
1469435 CACACGCACACA
1 CGCACGCACACA
*
1469447 CGCACAC-CACA
1 CGCACGCACACA
1469458 CGCACGCACCACGA
1 CGCACGCA-CAC-A
1469472 CAGCACGCACACA
1 C-GCACGCACACA
*
1469485 CACACGCACACA
1 CGCACGCACACA
*
1469497 --CACACACACA
1 CGCACGCACACA
* *
1469507 CGCACACGCACA
1 CGCACGCACACA
1469519 CGCACCGCACACA
1 CGCA-CGCACACA
*
1469532 CACACGCACA-A
1 CGCACGCACACA
*
1469543 -ACACGCACACA
1 CGCACGCACACA
1469554 --CACGCACACA
1 CGCACGCACACA
* *
1469564 CGCACACGCACA
1 CGCACGCACACA
*
1469576 CGCGCGCACACA
1 CGCACGCACACA
* *
1469588 CACACGCACACG
1 CGCACGCACACA
* *
1469600 CACACACACACA
1 CGCACGCACACA
**
1469612 CGCAC-CACGGA
1 CGCACGCACACA
*
1469623 CGCACGCACGCA
1 CGCACGCACACA
*
1469635 CGCA-GCACGCA
1 CGCACGCACACA
*
1469646 CGCACGCACGCA
1 CGCACGCACACA
*
1469658 -GCACGCACGCA
1 CGCACGCACACA
1469669 CGCACGCACACA
1 CGCACGCACACA
1469681 --CACG--CACA
1 CGCACGCACACA
*
1469689 CGCACACACACCA
1 CGCACGCACA-CA
*
1469702 CGCACGCACGCA
1 CGCACGCACACA
*
1469714 CGCACGCACGCA
1 CGCACGCACACA
*
1469726 CGCACGCAGCACGC
1 CGCACGCA-CAC-A
*
1469740 CGCACGCACGCA
1 CGCACGCACACA
*
1469752 CGCACGCACGCA
1 CGCACGCACACA
*
1469764 CGCACGCACACG
1 CGCACGCACACA
*
1469776 CGCACGCACGCA
1 CGCACGCACACA
*
1469788 CGCACGCACGCA
1 CGCACGCACACA
*
1469800 CGCACGCACGCA
1 CGCACGCACACA
*
1469812 CGCA-GCACGCA
1 CGCACGCACACA
1469823 CGCACGCACAC
1 CGCACGCACAC
1469834 GCACGCATAA
Statistics
Matches: 470, Mismatches: 54, Indels: 58
0.81 0.09 0.10
Matches are distributed among these distances:
8 4 0.01
9 7 0.01
10 43 0.09
11 67 0.14
12 279 0.59
13 40 0.09
14 23 0.05
15 7 0.01
ACGTcount: A:0.33, C:0.49, G:0.17, T:0.00
Consensus pattern (12 bp):
CGCACGCACACA
Found at i:1469289 original size:2 final size:2
Alignment explanation
Indices: 1469282--1469612 Score: 247
Period size: 2 Copynumber: 165.5 Consensus size: 2
1469272 CACGCAAACG
* * * * * *
1469282 CA CA CA CA CA CA CA CG CA CA CA CG CA CG CA CA CG CA CA CG CG
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
* * * * * *
1469324 CA CA CG CA CA CG CA CA CA CA CA CG CA CA CG CA CA CG CA CA CG
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
* *
1469366 CGA CA CA CA CG CA CA CGA CA CA CG CA CA CA CA CA C- CA CA CA CA
1 C-A CA CA CA CA CA CA C-A CA CA CA CA CA CA CA CA CA CA CA CA CA
* * * * * *
1469409 CA CG CA CA CA CA CG CG CA CG CA CA CA CA CA CG CA CA CA CG CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
* * * *
1469451 CA C- CA CA CG CA CG CA C- CA CGA CA GCA CG CA CA CA CA CA CG CA
1 CA CA CA CA CA CA CA CA CA CA C-A CA -CA CA CA CA CA CA CA CA CA
* * * *
1469493 CA CA CA CA CA CA CA CG CA CA CG CA CA CG CA C- CG CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
* * * * * *
1469534 CA CG CA CA AA CA CG CA CA CA CA CG CA CA CA CG CA CA CG CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
* * * * *
1469576 CG CG CG CA CA CA CA CA CG CA CA CG CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1469613 GCACCACGGA
Statistics
Matches: 252, Mismatches: 69, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
1 4 0.02
2 241 0.96
3 7 0.03
ACGTcount: A:0.37, C:0.50, G:0.13, T:0.00
Consensus pattern (2 bp):
CA
Found at i:1469629 original size:4 final size:4
Alignment explanation
Indices: 1469244--1469840 Score: 365
Period size: 4 Copynumber: 152.5 Consensus size: 4
1469234 CACACGCGCA
* * * *
1469244 CACG CGCG C-CG CGCG CACG C-CG CACG --CG CACG CAAACG CACA CACA
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG C--ACG CACG CACG
* * * * * * *
1469290 CACA CACG CACA CACG CACG CA-- CACG CACA CGCG CACA CGCA CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
* * * * * * * * * *
1469336 CACA CACA CACG CACA CGCA CACG CACA CGCG ACACA CACG CACA CGACA
1 CACG CACG CACG CACG CACG CACG CACG CACG -CACG CACG CACG C-ACG
* * * * * * * *
1469386 CACG CACA CACA CAC- CACA CACA CACG CACA CACA CGCG CACG CACA
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
* * * *
1469433 CACA CACG CACA CACG CACA C-CA CACG CACG CAC- CACG -ACAG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CAC-G CACG
* * * * * * * *
1469479 CACA CACA CACG CA-- CACA CACA CACA CACG CACA CGCA CACG CACCG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CA-CG
* * * * * * * *
1469526 CACA CACA CACG CACAAA CACG CA-- CACA CACG CACA CACG CACA CGCA
1 CACG CACG CACG CAC--G CACG CACG CACG CACG CACG CACG CACG CACG
* * * * * * * *
1469574 CACG CGCG CACA CACA CACG CACA CGCA CACA CACA CACG CAC- CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
*
1469621 GACG CACG CACG CACG CA-G CACG CACG CACG CACG CA-G CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
* * * * * *
1469667 CACG CACG CACA CACA CGCA CACG CACA CACAC CACG CACG CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CAC-G CACG CACG CACG CACG
1469716 CACG CACG CACG CACG CA-G CACG C-CG CACG CACG CACG CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
* *
1469762 CACG CACG CACA CGCG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1469810 CACG CA-G CACG CACG CACG CA-- CACG CACG CA
1 CACG CACG CACG CACG CACG CACG CACG CACG CA
1469841 TAAATACATA
Statistics
Matches: 483, Mismatches: 79, Indels: 62
0.77 0.13 0.10
Matches are distributed among these distances:
2 10 0.02
3 35 0.07
4 416 0.86
5 15 0.03
6 7 0.01
ACGTcount: A:0.32, C:0.50, G:0.18, T:0.00
Consensus pattern (4 bp):
CACG
Found at i:1469863 original size:2 final size:2
Alignment explanation
Indices: 1469856--1469881 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1469846 ACATATGAAT
1469856 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1469882 GATTTTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1469945 original size:2 final size:2
Alignment explanation
Indices: 1469933--1469974 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
1469923 CCATATGAAT
1469933 TA TA T- TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1469973 TA
1 TA
1469975 GATTTTAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1470462 original size:29 final size:30
Alignment explanation
Indices: 1470411--1470481 Score: 126
Period size: 29 Copynumber: 2.4 Consensus size: 30
1470401 TTTGTTTCAT
1470411 TTTAGTACCTCACCTTTAAAAATTTAATGCG
1 TTTAGTACCT-ACCTTTAAAAATTTAATGCG
1470442 TTTAGTACCT-CCTTTAAAAATTTAATGCG
1 TTTAGTACCTACCTTTAAAAATTTAATGCG
1470471 TTTAGTACCTA
1 TTTAGTACCTA
1470482 AAATTACTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
29 29 0.74
31 10 0.26
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTAGTACCTACCTTTAAAAATTTAATGCG
Found at i:1470662 original size:4 final size:4
Alignment explanation
Indices: 1470653--1470874 Score: 430
Period size: 4 Copynumber: 56.0 Consensus size: 4
1470643 TACTAAATAT
1470653 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCA- GCAC GCAC GCAC
1 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1470700 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1470748 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1470796 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GC-C GCAC GCAC
1 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1470843 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1470875 ACACACATAA
Statistics
Matches: 216, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
3 6 0.03
4 210 0.97
ACGTcount: A:0.25, C:0.50, G:0.25, T:0.00
Consensus pattern (4 bp):
GCAC
Found at i:1470900 original size:2 final size:2
Alignment explanation
Indices: 1470895--1470943 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
1470885 TACATATGAT
1470895 TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1470936 TA TA TA TA
1 TA TA TA TA
1470944 GATTTTAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1471004 original size:2 final size:2
Alignment explanation
Indices: 1470997--1471032 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1470987 CCATATGAAT
1470997 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1471033 GATTTTAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1471515 original size:31 final size:31
Alignment explanation
Indices: 1471477--1471548 Score: 144
Period size: 31 Copynumber: 2.3 Consensus size: 31
1471467 TTTGTTTCAT
1471477 TTTAGTACCTCACCTTTAAAAATTTAATGCG
1 TTTAGTACCTCACCTTTAAAAATTTAATGCG
1471508 TTTAGTACCTCACCTTTAAAAATTTAATGCG
1 TTTAGTACCTCACCTTTAAAAATTTAATGCG
1471539 TTTAGTACCT
1 TTTAGTACCT
1471549 AAAAATTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (31 bp):
TTTAGTACCTCACCTTTAAAAATTTAATGCG
Found at i:1471753 original size:2 final size:2
Alignment explanation
Indices: 1471746--1471784 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1471736 CTTGAATTTA
1471746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1471785 ATCCAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1476675 original size:33 final size:33
Alignment explanation
Indices: 1476637--1476707 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
1476627 ATTACTAAAA
* *
1476637 AATTTGAGTTATTTGAGTTGTACTTTAAAATTC
1 AATTTGAATTATTCGAGTTGTACTTTAAAATTC
* *
1476670 GATTTGAATTATTCGAGTTGTACTTTATAATTC
1 AATTTGAATTATTCGAGTTGTACTTTAAAATTC
1476703 AATTT
1 AATTT
1476708 AAACTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.49
Consensus pattern (33 bp):
AATTTGAATTATTCGAGTTGTACTTTAAAATTC
Found at i:1477949 original size:2 final size:2
Alignment explanation
Indices: 1477903--1477935 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1477893 AAGTTTAACA
1477903 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1477936 AATTTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1478420 original size:16 final size:17
Alignment explanation
Indices: 1478382--1478422 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
1478372 ATAATAGTCT
1478382 TTGA-AATTTATAATGG
1 TTGATAATTTATAATGG
1478398 TCT-ATAATTTAT-ATGG
1 T-TGATAATTTATAATGG
1478414 TTGATAATT
1 TTGATAATT
1478423 AGTGGGCGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.05
16 13 0.59
17 8 0.36
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (17 bp):
TTGATAATTTATAATGG
Found at i:1478852 original size:57 final size:57
Alignment explanation
Indices: 1478780--1479251 Score: 674
Period size: 57 Copynumber: 8.3 Consensus size: 57
1478770 CATAGTTTCC
* * *
1478780 AAAATAGCGTTGCGATAATATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
* ** * **
1478837 AAAATCGTGTTGCGATAACACTGTTTACCTACATCAATAATTAGCGTTGCGAATTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
* * *
1478894 AAAATCGCGTTGCGATAGTACTGTTTACCTACATCGGTAATTAGCGTTGTGATTTTGG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTT-G
** * *
1478952 AAAATCGCGTTGCGATAACACTGTTTACCTCTATCGGTAATTAGCTTTGCGAATTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
* * * *
1479009 TAAATTGTGTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
*
1479066 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGCAATTAGCGTTGCGAATTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
* * * *
1479123 TAAATCGCGTTGTGATAGTACTGTTTACCTATATCGGTAATTAGAGTTGCGAAGTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
* * *
1479180 AAAATCTCGTTGCGATAGTACTGTTCACCTATATCAGTAATTAGCGTTGCGAATTTG
1 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
*
1479237 AAAATCTCGTTGCGA
1 AAAATCGCGTTGCGA
1479252 ATTTGAAAAT
Statistics
Matches: 368, Mismatches: 46, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
57 318 0.86
58 50 0.14
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (57 bp):
AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
Found at i:1479072 original size:172 final size:171
Alignment explanation
Indices: 1478780--1479251 Score: 712
Period size: 172 Copynumber: 2.8 Consensus size: 171
1478770 CATAGTTTCC
* * *
1478780 AAAATAGCGTTGCGATAATATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGT
1 AAAATCGCGTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATTGT
** * *
1478845 GTTGCGATAACACTGTTTACCTACATCAATAATTAGCGTTGCGAATTTGAAAATCGCGTTGCGAT
66 GTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCGTTGCGAT
* * *
1478910 AGTACTGTTTACCTACATCGGTAATTAGCGTTGTGATTTTGG
131 AGTACTGTTTACCTACATCGGCAATTAGCGTTGCGAATTT-G
* * * *
1478952 AAAATCGCGTTGCGATAACACTGTTTACCTCTATCGGTAATTAGCTTTGCGAATTTGTAAATTGT
1 AAAATCGCGTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATTGT
1479017 GTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCGTTGCGAT
66 GTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCGTTGCGAT
*
1479082 AGTACTGTTTACCTATATCGGCAATTAGCGTTGCGAATTTG
131 AGTACTGTTTACCTACATCGGCAATTAGCGTTGCGAATTTG
* * * * *
1479123 TAAATCGCGTTGTGATAGTACTGTTTACCTATATCGGTAATTAGAGTTGCGAAGTTGAAAATCT-
1 AAAATCGCGTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAAT-TG
* * *
1479187 CGTTGCGATAGTACTGTTCACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCTCGTTGCGA
65 TGTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCGTTGCGA
1479252 ATTTGAAAAT
Statistics
Matches: 272, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
171 116 0.43
172 156 0.57
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (171 bp):
AAAATCGCGTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATTGT
GTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCGTTGCGAT
AGTACTGTTTACCTACATCGGCAATTAGCGTTGCGAATTTG
Found at i:1479249 original size:20 final size:20
Alignment explanation
Indices: 1479224--1479291 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
1479214 CAGTAATTAG
1479224 CGTTGCGAATTTGAAAATCT
1 CGTTGCGAATTTGAAAATCT
1479244 CGTTGCGAATTTGAAAATCT
1 CGTTGCGAATTTGAAAATCT
* * *
1479264 CATTGCGAATTTGAAAACCG
1 CGTTGCGAATTTGAAAATCT
1479284 CGTTGCGA
1 CGTTGCGA
1479292 TAGTACTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (20 bp):
CGTTGCGAATTTGAAAATCT
Found at i:1479345 original size:21 final size:21
Alignment explanation
Indices: 1479319--1479359 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1479309 ATCGATAATC
1479319 AGCGTTGCGAATTTGGAAAAT
1 AGCGTTGCGAATTTGGAAAAT
*
1479340 AGCGTTGCGATTTTGGAAAA
1 AGCGTTGCGAATTTGGAAAA
1479360 CCCTGGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (21 bp):
AGCGTTGCGAATTTGGAAAAT
Found at i:1479409 original size:20 final size:20
Alignment explanation
Indices: 1479365--1479414 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1479355 GAAAACCCTG
* *
1479365 GTTGTGATTTACATATTATC
1 GTTGCGATTTACATATTAGC
* *
1479385 ATTGCGATTTACATATTCGC
1 GTTGCGATTTACATATTAGC
1479405 GTTGCGATTT
1 GTTGCGATTT
1479415 TAGAATCTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.46
Consensus pattern (20 bp):
GTTGCGATTTACATATTAGC
Found at i:1480440 original size:14 final size:14
Alignment explanation
Indices: 1480421--1480448 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1480411 TGACATTGTA
1480421 TCGTCTATCATGGG
1 TCGTCTATCATGGG
1480435 TCGTCTATCATGGG
1 TCGTCTATCATGGG
1480449 AAGACATCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.29, T:0.36
Consensus pattern (14 bp):
TCGTCTATCATGGG
Found at i:1480607 original size:2 final size:2
Alignment explanation
Indices: 1480560--1480594 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1480550 AATTTTAACA
1480560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1480595 ATTTAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1481510 original size:57 final size:57
Alignment explanation
Indices: 1481446--1481738 Score: 336
Period size: 57 Copynumber: 5.1 Consensus size: 57
1481436 CCAAAATAGC
* *
1481446 GTTGCGATAATATTGTTTACCTATATCGGTAATTAGCGTTGCAAATTTGAAAATCGT
1 GTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGT
* * ** * *
1481503 GTTGCGATAACACTGTTTACCTACATCAATAATTAGCGTTACGAATTTGAAAATCGC
1 GTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGT
* * * * * *
1481560 GTTTCGATAGTATTGTTTACCTACATCGGTAATTAGCGTTGCGATTTTGGAAAATCGC
1 GTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTT-GAAAATCGT
** * * * * *
1481618 GTTAAGATAATACTGTTTACCTCTATCGGTAAGTAGCTTTGCGAATTTGTAAATTGT
1 GTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGT
* * * *
1481675 GTTGCGATAGTACTATTTACCTATGTCGGCAATTAGCGTTGCGAATTTGAAAATC-T
1 GTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGT
1481731 CGTTGCGA
1 -GTTGCGA
1481739 ATTTGTAAAT
Statistics
Matches: 195, Mismatches: 39, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
56 1 0.01
57 146 0.75
58 48 0.25
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (57 bp):
GTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGT
Found at i:1481683 original size:115 final size:114
Alignment explanation
Indices: 1481438--1481734 Score: 362
Period size: 115 Copynumber: 2.6 Consensus size: 114
1481428 CATAGTTTCC
* * * *
1481438 AAAATAGCGTTGCGATAATATTGTTTACCTATATCGGTAATTAGCGTTGCAAATTTGAAAATCGT
1 AAAATCGCGTTGCGATAGTATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGC
** *
1481503 GTTGCGATAACACTGTTTACCTACATCAATAATTAGCGTTACGAATTTG
66 GTTAAGATAACACTGTTTACCTACATCAATAAGTAGCGTTACGAATTTG
* * *
1481552 AAAATCGCGTTTCGATAGTATTGTTTACCTACATCGGTAATTAGCGTTGCGATTTTGGAAAATCG
1 AAAATCGCGTTGCGATAGTATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTT-GAAAATCG
* ** * *
1481617 CGTTAAGATAATACTGTTTACCT-CTATCGGTAAGTAGCTTTGCGAATTTG
65 CGTTAAGATAACACTGTTTACCTAC-ATCAATAAGTAGCGTTACGAATTTG
* * * * * * * *
1481667 TAAATTGTGTTGCGATAGTACTATTTACCTATGTCGGCAATTAGCGTTGCGAATTTGAAAATCTC
1 AAAATCGCGTTGCGATAGTATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGC
1481732 GTT
66 GTT
1481735 GCGAATTTGT
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
114 62 0.40
115 93 0.60
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (114 bp):
AAAATCGCGTTGCGATAGTATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGC
GTTAAGATAACACTGTTTACCTACATCAATAAGTAGCGTTACGAATTTG
Found at i:1481736 original size:20 final size:20
Alignment explanation
Indices: 1481711--1481749 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1481701 CGGCAATTAG
1481711 CGTTGCGAATTTGAAAATCT
1 CGTTGCGAATTTGAAAATCT
*
1481731 CGTTGCGAATTTGTAAATC
1 CGTTGCGAATTTGAAAATC
1481750 GAGTTGCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (20 bp):
CGTTGCGAATTTGAAAATCT
Found at i:1481755 original size:20 final size:20
Alignment explanation
Indices: 1481712--1481758 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
1481702 GGCAATTAGC
**
1481712 GTTGCGAATTTGAAAATCTC
1 GTTGCGAATTTGAAAATCGA
*
1481732 GTTGCGAATTTGTAAATCGA
1 GTTGCGAATTTGAAAATCGA
1481752 GTTGCGA
1 GTTGCGA
1481759 TAGTACTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (20 bp):
GTTGCGAATTTGAAAATCGA
Found at i:1481756 original size:77 final size:77
Alignment explanation
Indices: 1481656--1481835 Score: 261
Period size: 77 Copynumber: 2.3 Consensus size: 77
1481646 GTAAGTAGCT
* * * * *
1481656 TTGCGAATTTGTAAATTGTGTTGCGATAGTACTATTTACCTATGTCGGCAATTAGCGTTGCGAAT
1 TTGCGAATTTGTAAATCGAGTTGCGATAGTACTATTTACCTATATCGGCAATTAGAGTTGCGAAG
1481721 TTGAAAATCTCG
66 TTGAAAATCTCG
* *
1481733 TTGCGAATTTGTAAATCGAGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGAGTTGCGAAG
1 TTGCGAATTTGTAAATCGAGTTGCGATAGTACTATTTACCTATATCGGCAATTAGAGTTGCGAAG
1481798 TTGAAAATCTCG
66 TTGAAAATCTCG
* * **
1481810 TTGCGAAGTTGAAAATCTCGTTGCGA
1 TTGCGAATTTGTAAATCGAGTTGCGA
1481836 ATTTGTAAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
77 92 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (77 bp):
TTGCGAATTTGTAAATCGAGTTGCGATAGTACTATTTACCTATATCGGCAATTAGAGTTGCGAAG
TTGAAAATCTCG
Found at i:1481814 original size:20 final size:20
Alignment explanation
Indices: 1481789--1481855 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
1481779 GGTAATTAGA
1481789 GTTGCGAAGTTGAAAATCTC
1 GTTGCGAAGTTGAAAATCTC
1481809 GTTGCGAAGTTGAAAATCTC
1 GTTGCGAAGTTGAAAATCTC
* * *
1481829 GTTGCGAATTTGTAAATCGC
1 GTTGCGAAGTTGAAAATCTC
1481849 GTTGCGA
1 GTTGCGA
1481856 TAGTACTGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (20 bp):
GTTGCGAAGTTGAAAATCTC
Found at i:1481839 original size:97 final size:97
Alignment explanation
Indices: 1481710--1481912 Score: 352
Period size: 97 Copynumber: 2.1 Consensus size: 97
1481700 TCGGCAATTA
*
1481710 GCGTTGCGAATTTGAAAATCTCGTTGCGAATTTGTAAATCGAGTTGCGATAGTACTGTTTACCTA
1 GCGTTGCGAAGTTGAAAATCTCGTTGCGAATTTGTAAATCGAGTTGCGATAGTACTGTTTACCTA
*
1481775 TATCGGTAATTAGAGTTGCGAAGTTGAAAATC
66 TATCAGTAATTAGAGTTGCGAAGTTGAAAATC
* *
1481807 TCGTTGCGAAGTTGAAAATCTCGTTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTA
1 GCGTTGCGAAGTTGAAAATCTCGTTGCGAATTTGTAAATCGAGTTGCGATAGTACTGTTTACCTA
* *
1481872 TATCAGTAATTAGCGTTGCGAATTTGAAAATC
66 TATCAGTAATTAGAGTTGCGAAGTTGAAAATC
1481904 GCGTTGCGA
1 GCGTTGCGA
1481913 TAGTACTGTT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 99 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (97 bp):
GCGTTGCGAAGTTGAAAATCTCGTTGCGAATTTGTAAATCGAGTTGCGATAGTACTGTTTACCTA
TATCAGTAATTAGAGTTGCGAAGTTGAAAATC
Found at i:1481895 original size:57 final size:57
Alignment explanation
Indices: 1481828--1481971 Score: 216
Period size: 57 Copynumber: 2.5 Consensus size: 57
1481818 TTGAAAATCT
* * *
1481828 CGTTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTATATCAGTAATTAG
1 CGTTGCGAATTTGAAAATCGCGTTGCGATAGTACTGTTTACCTACATCAGTAATCAG
* *
1481885 CGTTGCGAATTTGAAAATCGCGTTGCGATAGTACTGTTTACCTACATCGGTAATCAT
1 CGTTGCGAATTTGAAAATCGCGTTGCGATAGTACTGTTTACCTACATCAGTAATCAG
* *
1481942 CGTAGCGAATTTAGAAAATTGCGTTGCGAT
1 CGTTGCGAATTT-GAAAATCGCGTTGCGAT
1481972 TTTGGAAAAC
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
57 63 0.80
58 16 0.20
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (57 bp):
CGTTGCGAATTTGAAAATCGCGTTGCGATAGTACTGTTTACCTACATCAGTAATCAG
Found at i:1484040 original size:2 final size:2
Alignment explanation
Indices: 1484033--1484073 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1484023 ATGTCTTTCT
1484033 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1484074 CATTTACCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1484238 original size:29 final size:29
Alignment explanation
Indices: 1484193--1484250 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
1484183 GTGTTGGTAG
*
1484193 TAGGTCGCCATGCCTTCCGGGCGACCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
* *
1484222 TAGGTCGCCATGTCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
1484251 AAGAGATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.14, C:0.36, G:0.28, T:0.22
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCCGGCGACCTAC
Found at i:1484312 original size:14 final size:14
Alignment explanation
Indices: 1484293--1484339 Score: 76
Period size: 14 Copynumber: 3.4 Consensus size: 14
1484283 CGCTGGGCAT
*
1484293 CCGAGGCCATCTGA
1 CCGAGGCCATCCGA
1484307 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
1484321 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
1484335 ACGAG
1 CCGAG
1484340 CTATGCGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.23, C:0.38, G:0.30, T:0.09
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:1484373 original size:33 final size:33
Alignment explanation
Indices: 1484321--1484405 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
1484311 GGCCATCCGA
* * * *
1484321 CCGAGGCCATCCGAACGAGCTATGCGAGGGCAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
*
1484354 CCGAGGGCAACCGAGCGAGCTATGCGATGGAAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
1484387 CCGAGGG-AAGCCGAGCGAG
1 CCGAGGGCAA-CCGAGCGAG
1484406 GGTAGGTCGC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.04
33 44 0.96
ACGTcount: A:0.26, C:0.27, G:0.38, T:0.09
Consensus pattern (33 bp):
CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
Found at i:1484442 original size:29 final size:29
Alignment explanation
Indices: 1484409--1484464 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
1484399 GAGCGAGGGT
*
1484409 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGGGCATGGCGACCTACA
1484438 AGGTCGCCCGGAGGGCATGGCGACCTA
1 AGGTCGCCCGGAGGGCATGGCGACCTA
1484465 TGTGTTGGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.38, T:0.12
Consensus pattern (29 bp):
AGGTCGCCCGGAGGGCATGGCGACCTACA
Done.