Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14308945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 61 of 62
Found at i:14050660 original size:22 final size:22
Alignment explanation
Indices: 14050634--14050676 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14050624 TAATGAATTA
*
14050634 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATACATAT
14050656 TTTAAAATAAATCAATACATA
1 TTTAAAATAAATCAATACATA
14050677 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATACATAT
Found at i:14050685 original size:22 final size:22
Alignment explanation
Indices: 14050636--14050684 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
14050626 ATGAATTATT
* **
14050636 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATACATATAA
14050658 TAAAATAAATCAATACATACTAA
1 TAAAATAAATCAATACATA-TAA
14050681 TAAA
1 TAAA
14050685 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATACATATAA
Found at i:14050693 original size:54 final size:54
Alignment explanation
Indices: 14050624--14051075 Score: 395
Period size: 54 Copynumber: 8.4 Consensus size: 54
14050614 ACAACTACAA
*
14050624 TAATGAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATAC
**
14050678 TAATAAATTATTTAAAATAAATCAATCTGTATTTTAAAATAAATCAAT-CTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATAC-ATAC
* *
14050732 TAATAAATTATTTAAAATAAATCAAT-C-TA---TACAACTACAAT-AATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTA-AAATA-AATCAATACATAC
** * ** * ** * *
14050781 -AATCGA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTA-TTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATACATAC
** *
14050835 -AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAACTATTTAAAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATACATAC
* * *
14050898 -AACTACA--A--T--AATAAATCAATTCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATAC
*
14050946 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATAC
*
14051000 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATAC
14051054 TAATAAATTATTTAAAATAAAT
1 TAATAAATTATTTAAAATAAAT
14051076 TATTTTAAAA
Statistics
Matches: 339, Mismatches: 28, Indels: 62
0.79 0.07 0.14
Matches are distributed among these distances:
47 2 0.01
48 44 0.13
49 7 0.02
50 13 0.04
51 3 0.01
52 6 0.02
53 5 0.01
54 222 0.65
58 12 0.04
60 3 0.01
62 8 0.02
63 11 0.03
64 3 0.01
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.35
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATAC
Found at i:14050695 original size:32 final size:32
Alignment explanation
Indices: 14050656--14050757 Score: 109
Period size: 32 Copynumber: 3.5 Consensus size: 32
14050646 CAATCCATAT
14050656 TTTAAAATAAATCAATACATACTAATAAATTA
1 TTTAAAATAAATCAATACATACTAATAAATTA
*
14050688 TTTAAAATAAATC---A-AT-CT-GT--A-T-
1 TTTAAAATAAATCAATACATACTAATAAATTA
14050710 TTTAAAATAAATCAAT-CTATACTAATAAATTA
1 TTTAAAATAAATCAATAC-ATACTAATAAATTA
14050742 TTTAAAATAAATCAAT
1 TTTAAAATAAATCAAT
14050758 CTATACAACT
Statistics
Matches: 57, Mismatches: 2, Indels: 22
0.70 0.02 0.27
Matches are distributed among these distances:
22 13 0.23
23 1 0.02
24 1 0.02
26 3 0.05
27 4 0.07
28 3 0.05
29 1 0.02
30 1 0.02
31 1 0.02
32 29 0.51
ACGTcount: A:0.53, C:0.09, G:0.01, T:0.37
Consensus pattern (32 bp):
TTTAAAATAAATCAATACATACTAATAAATTA
Found at i:14050736 original size:18 final size:18
Alignment explanation
Indices: 14050714--14050765 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
14050704 CTGTATTTTA
14050714 AAATAAATCAATCTATAC
1 AAATAAATCAATCTATAC
* *
14050732 TAATAAAT-TAT-T-TA-
1 AAATAAATCAATCTATAC
14050746 AAATAAATCAATCTATAC
1 AAATAAATCAATCTATAC
14050764 AA
1 AA
14050766 CTACAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
14 7 0.27
15 4 0.15
16 2 0.08
17 4 0.15
18 9 0.35
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATAAATCAATCTATAC
Found at i:14050739 original size:22 final size:22
Alignment explanation
Indices: 14050690--14050738 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
14050680 ATAAATTATT
* **
14050690 TAAAATAAATCAATCTGTATTT
1 TAAAATAAATCAATCTATATAA
14050712 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCTATA-TAA
14050735 TAAA
1 TAAA
14050739 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.10, G:0.02, T:0.35
Consensus pattern (22 bp):
TAAAATAAATCAATCTATATAA
Found at i:14050797 original size:134 final size:133
Alignment explanation
Indices: 14050639--14051030 Score: 703
Period size: 134 Copynumber: 2.9 Consensus size: 133
14050629 AATTATTTAA
*
14050639 AATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAAT-CATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
** * *
14050704 CTGTATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCTATACAACTA
65 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
14050769 CAAT
130 CAAT
14050773 AATAAATCAATCGATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATC-ATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
*
14050838 CCATATTTTAAAATAAATCAATCCATACTAATAAACTATTTAAAATAAATCAATCCATACAACTA
65 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
14050903 CAAT
130 CAAT
14050907 AATAAATCAATTCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAA-TCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
14050972 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA
65 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA
14051031 TTTTAAAATA
Statistics
Matches: 249, Mismatches: 7, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
133 1 0.00
134 246 0.99
135 2 0.01
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (133 bp):
AATAAATCAATCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATC
CATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAC
AAT
Found at i:14050848 original size:22 final size:22
Alignment explanation
Indices: 14050822--14050864 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14050812 TAATAAATTA
14050822 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
14050844 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
14050865 CTAATAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:14050911 original size:80 final size:80
Alignment explanation
Indices: 14050827--14050976 Score: 273
Period size: 80 Copynumber: 1.9 Consensus size: 80
14050817 AATTATTTAA
14050827 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAACTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAACTATTTAAAATAAATCAAT
14050892 CCATACAACTACAAT
66 CCATACAACTACAAT
* * *
14050907 AATAAATCAATTCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAACTATTTAAAATAAATCAAT
14050972 CCATA
66 CCATA
14050977 TTTTAAAATA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 67 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.33
Consensus pattern (80 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAACTATTTAAAATAAATCAAT
CCATACAACTACAAT
Found at i:14050953 original size:22 final size:22
Alignment explanation
Indices: 14050878--14050952 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
14050868 ATAAACTATT
* *
14050878 TAAAATAAATCAATCCATACAA
1 TAAAATAAATCAATTCATATAA
**
14050900 CTACAATAATAAATCAATTCATATTT
1 -T--AA-AATAAATCAATTCATATAA
14050926 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATTCATA-TAA
14050949 TAAA
1 TAAA
14050953 TTATTTAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
25 3 0.07
26 15 0.36
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATTCATATAA
Found at i:14050967 original size:188 final size:187
Alignment explanation
Indices: 14050624--14051075 Score: 614
Period size: 188 Copynumber: 2.4 Consensus size: 187
14050614 ACAACTACAA
*
14050624 TAATGAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTAT
** *** *
14050689 TTAAAATAAATCAATCTGTATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAAT
66 TTAAAATAAATCAATCCATAAACTAAAATAAATAAATCTATACTAAT-AATTATTTAAAATAAAT
* * *
14050754 CAATCTATACAACTACAATAATAAATCAATCGATATTTTAAAATAAATCAATTCATAC
130 CAATCTATACAACTAAAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
14050812 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAACTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTAT
* * *
14050877 TTAAAATAAATCAATCCATACAACTACAAT-AATAAATC-A-ATTCAT-A-T-TTTAAAATAAAT
66 TTAAAATAAATCAATCCATA-AACTAAAATAAATAAATCTATACTAATAATTATTTAAAATAAAT
14050936 CAAT-TCATACTAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA
130 CAATCT-ATAC-AACTAAA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATA
14050999 C
187 C
*
14051000 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTAT
14051065 TTAAAATAAAT
66 TTAAAATAAAT
14051076 TATTTTAAAA
Statistics
Matches: 238, Mismatches: 17, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
181 1 0.00
182 23 0.10
183 3 0.01
184 2 0.01
186 5 0.02
187 1 0.00
188 198 0.83
189 5 0.02
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.35
Consensus pattern (187 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTAT
TTAAAATAAATCAATCCATAAACTAAAATAAATAAATCTATACTAATAATTATTTAAAATAAATC
AATCTATACAACTAAAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
Found at i:14050982 original size:22 final size:22
Alignment explanation
Indices: 14050956--14050998 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14050946 TAATAAATTA
14050956 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
14050978 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
14050999 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:14051007 original size:22 final size:22
Alignment explanation
Indices: 14050958--14051006 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
14050948 ATAAATTATT
**
14050958 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
14050980 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
14051003 TAAA
1 TAAA
14051007 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:14051036 original size:22 final size:22
Alignment explanation
Indices: 14051010--14051052 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14051000 TAATAAATTA
14051010 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
14051032 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
14051053 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:14051061 original size:22 final size:22
Alignment explanation
Indices: 14051012--14051060 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
14051002 ATAAATTATT
**
14051012 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
14051034 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
14051057 TAAA
1 TAAA
14051061 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:14051084 original size:15 final size:15
Alignment explanation
Indices: 14051055--14051172 Score: 139
Period size: 15 Copynumber: 7.5 Consensus size: 15
14051045 AATTCATACT
14051055 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
14051069 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
14051084 AATAAATCAAACCATATTTTAT
1 AATAAAT-------TATTTTAA
*
14051106 AATAATTTATTTTAA
1 AATAAATTATTTTAA
*
14051121 AATAAATTATTTTAT
1 AATAAATTATTTTAA
14051136 AATAAATTATTTTAA
1 AATAAATTATTTTAA
14051151 AATAAATTATTTTAA
1 AATAAATTATTTTAA
14051166 AATAAAT
1 AATAAAT
14051173 AACCTTATTA
Statistics
Matches: 90, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
14 9 0.10
15 68 0.76
22 13 0.14
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:14051090 original size:69 final size:67
Alignment explanation
Indices: 14051001--14051157 Score: 210
Period size: 67 Copynumber: 2.3 Consensus size: 67
14050991 AATCCATACT
* *
14051001 AATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTA-
1 AATAAATTATTTTAAAATAAATCAAACCATATTTTAAAAT-AATCAATT-ATA-AAATAAATTAT
14051064 TTTAA
63 TTTAA
* ** *
14051069 AATAAATTATTTTAAAATAAATCAAACCATATTTTATAATAATTTATTTTAAAATAAATTATTTT
1 AATAAATTATTTTAAAATAAATCAAACCATATTTTAAAATAATCAATTATAAAATAAATTATTTT
*
14051134 AT
66 AA
14051136 AATAAATTATTTTAAAATAAAT
1 AATAAATTATTTTAAAATAAAT
14051158 TATTTTAAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
66 9 0.11
67 28 0.35
68 15 0.19
69 28 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (67 bp):
AATAAATTATTTTAAAATAAATCAAACCATATTTTAAAATAATCAATTATAAAATAAATTATTTT
AA
Found at i:14051114 original size:47 final size:50
Alignment explanation
Indices: 14050921--14051142 Score: 149
Period size: 54 Copynumber: 4.3 Consensus size: 50
14050911 AATCAATTCA
**
14050921 TATTTTAAAATAAATCAATTCATACTAATAAAT--TA-TTTAAAATAAATCAAT
1 TATTTTAAAATAAATCAAACCATACTAATAAATAATATTTTAAAAT--A--AAT
*
14050972 CCATATTTTAAAATAAATCAATCCATACTAATAAAT--TA-TTTAAAATAAATCAAT
1 ---TATTTTAAAATAAATCAAACCATACTAATAAATAATATTTTAAAAT--A--AAT
**
14051026 CCATATTTTAAAATAAATCAATTCATACTAATAAAT--TA-TTTAAAATAAAT
1 ---TATTTTAAAATAAATCAAACCATACTAATAAATAATATTTTAAAATAAAT
**
14051076 TATTTTAAAATAAATCAAACCATA-TTTTATAATAATTTATTTTAAAATAAAT
1 TATTTTAAAATAAATCAAACCATACTAATA-AATAA--TATTTTAAAATAAAT
*
14051128 TATTTTATAATAAAT
1 TATTTTAAAATAAAT
14051143 TATTTTAAAA
Statistics
Matches: 155, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
46 3 0.02
47 25 0.16
50 3 0.02
51 2 0.01
52 27 0.17
54 95 0.61
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (50 bp):
TATTTTAAAATAAATCAAACCATACTAATAAATAATATTTTAAAATAAAT
Found at i:14057991 original size:2 final size:2
Alignment explanation
Indices: 14057984--14058014 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14057974 CAGTCGCCTG
14057984 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14058015 TACCTTGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14058329 original size:27 final size:28
Alignment explanation
Indices: 14058260--14058316 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
14058250 ACGATTTTGA
14058260 GCTTAAGAATTTATACTAAAAATTTAGG
1 GCTTAAGAATTTATACTAAAAATTTAGG
14058288 GCTTAAGAATTTATACTAAAAATTTAGG
1 GCTTAAGAATTTATACTAAAAATTTAGG
14058316 G
1 G
14058317 GTGTTGAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.35
Consensus pattern (28 bp):
GCTTAAGAATTTATACTAAAAATTTAGG
Found at i:14062545 original size:4 final size:4
Alignment explanation
Indices: 14062536--14062795 Score: 520
Period size: 4 Copynumber: 65.0 Consensus size: 4
14062526 CATGGGTTCA
14062536 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
14062584 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
14062632 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
14062680 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
14062728 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
14062776 TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG
14062796 CATGCATGCA
Statistics
Matches: 256, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 256 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:14063992 original size:35 final size:35
Alignment explanation
Indices: 14063951--14064030 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
14063941 AATAGACTCA
* *
14063951 TCAATTACATTTTAAACCCCAAAATCCAAAATTCT
1 TCAATTACATTCTAAACCCCAAAATCCAAAATACT
* * *
14063986 TCAATTATATTCTAAACCTCAAATTCCAAAATACT
1 TCAATTACATTCTAAACCCCAAAATCCAAAATACT
14064021 TCAATTACAT
1 TCAATTACAT
14064031 GCCCAACCCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAAATCCAAAATACT
Found at i:14064044 original size:35 final size:35
Alignment explanation
Indices: 14063964--14064045 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
14063954 ATTACATTTT
* * * * *
14063964 AAACCCCAAAATCCAAAATTCTTCAATTATATTCT
1 AAACCCCAAATTCCAAAATACTTCAATTACATGCC
*
14063999 AAACCTCAAATTCCAAAATACTTCAATTACATGCC
1 AAACCCCAAATTCCAAAATACTTCAATTACATGCC
*
14064034 CAACCCCAAATT
1 AAACCCCAAATT
14064046 TATAATCCAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.43, C:0.29, G:0.01, T:0.27
Consensus pattern (35 bp):
AAACCCCAAATTCCAAAATACTTCAATTACATGCC
Found at i:14064666 original size:16 final size:16
Alignment explanation
Indices: 14064645--14064675 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14064635 TACAACTCGA
14064645 TTTTAACTTGAATTTT
1 TTTTAACTTGAATTTT
*
14064661 TTTTAAGTTGAATTT
1 TTTTAACTTGAATTT
14064676 ATGAAATTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (16 bp):
TTTTAACTTGAATTTT
Found at i:14065029 original size:35 final size:35
Alignment explanation
Indices: 14064935--14065030 Score: 138
Period size: 35 Copynumber: 2.7 Consensus size: 35
14064925 ATTGAATTAT
** * *
14064935 GAATTTGGGGTTGGGCATGTAATTAAAATATTTTG
1 GAATTTGGGGTTTAGAATGTAATTGAAATATTTTG
* *
14064970 GAATTTGAGGTTTAGAATGTAATTGAAGTATTTTG
1 GAATTTGGGGTTTAGAATGTAATTGAAATATTTTG
14065005 GAATTTGGGGTTTAGAATGTAATTGA
1 GAATTTGGGGTTTAGAATGTAATTGA
14065031 TGATCGTGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (35 bp):
GAATTTGGGGTTTAGAATGTAATTGAAATATTTTG
Found at i:14067916 original size:19 final size:20
Alignment explanation
Indices: 14067892--14067934 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
14067882 CACCTACTAT
14067892 GGTGGCTCCGACAA-GGACC
1 GGTGGCTCCGACAAGGGACC
14067911 GGTGGCTCCGACAAGGGACC
1 GGTGGCTCCGACAAGGGACC
14067931 GGTG
1 GGTG
14067935 ACCCCCTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.19, C:0.28, G:0.42, T:0.12
Consensus pattern (20 bp):
GGTGGCTCCGACAAGGGACC
Found at i:14068188 original size:31 final size:30
Alignment explanation
Indices: 14068094--14068188 Score: 83
Period size: 29 Copynumber: 3.2 Consensus size: 30
14068084 CGAGGTAACT
* *
14068094 TTCTC-CATTTCCTTTTTTTTCTTTTTTCTTA
1 TTCTCTCATTT-CTTCTGTTTCTTTTTT-TTA
14068125 -T-T-TCATTTCTTCTGTTTCTTTTTTTTA
1 TTCTCTCATTTCTTCTGTTTCTTTTTTTTA
* *
14068152 TTCTCTCATTT-TTTTGTTTTTTTTGTTTCTA
1 TTCTCTCATTTCTTCTGTTTCTTTT-TTT-TA
14068183 TTCTCT
1 TTCTCT
14068189 TTGTTTTTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
27 3 0.06
28 15 0.28
29 18 0.33
30 10 0.19
31 8 0.15
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.73
Consensus pattern (30 bp):
TTCTCTCATTTCTTCTGTTTCTTTTTTTTA
Found at i:14068197 original size:31 final size:29
Alignment explanation
Indices: 14068106--14068188 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
14068096 CTCCATTTCC
14068106 TTTTT-TTTCTTTTTTCTTA-T-T-TCATT
1 TTTTTGTTTCTTTTTT-TTATTCTCTCATT
*
14068132 TCTTCTGTTTCTTTTTTTTATTCTCTCATT
1 T-TTTTGTTTCTTTTTTTTATTCTCTCATT
*
14068162 TTTTTGTTTTTTTTGTTTCTATTCTCT
1 TTTTTGTTTCTTTT-TTT-TATTCTCT
14068189 TTGTTTTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.02
27 6 0.13
28 11 0.23
29 12 0.26
30 9 0.19
31 8 0.17
ACGTcount: A:0.06, C:0.14, G:0.04, T:0.76
Consensus pattern (29 bp):
TTTTTGTTTCTTTTTTTTATTCTCTCATT
Found at i:14068643 original size:6 final size:6
Alignment explanation
Indices: 14068632--14068680 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
14068622 AGGCATGCAG
* * * *
14068632 AAATAA AAATAA TAAATAT AAATAT AAATAA AAGTAA AAATTA AAATAA
1 AAATAA AAATAA -AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
14068681 TTAATAATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (6 bp):
AAATAA
Found at i:14068687 original size:25 final size:25
Alignment explanation
Indices: 14068632--14068680 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
14068622 AGGCATGCAG
14068632 AAATAAAAATAATAAATATAAATAT
1 AAATAAAAATAATAAATATAAATAT
*
14068657 AAATAAAAGTAA-AAAT-TAAA-AT
1 AAATAAAAATAATAAATATAAATAT
14068679 AA
1 AA
14068681 TTAATAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 4 0.17
24 4 0.17
25 11 0.48
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (25 bp):
AAATAAAAATAATAAATATAAATAT
Found at i:14068700 original size:21 final size:22
Alignment explanation
Indices: 14068676--14068719 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
14068666 TAAAAATTAA
*
14068676 AATAATTAATAATTA-AATAAT
1 AATAATTAATAATAACAATAAT
14068697 AATAATTAATAATAACAATAAT
1 AATAATTAATAATAACAATAAT
14068719 A
1 A
14068720 TTAAGAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
AATAATTAATAATAACAATAAT
Found at i:14068706 original size:7 final size:7
Alignment explanation
Indices: 14068676--14068709 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
14068666 TAAAAATTAA
14068676 AATAATT
1 AATAATT
14068683 AATAATT
1 AATAATT
14068690 AAATAA-T
1 -AATAATT
14068697 AATAATT
1 AATAATT
14068704 AATAAT
1 AATAAT
14068710 AACAATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 5 0.20
7 15 0.60
8 5 0.20
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AATAATT
Found at i:14068716 original size:16 final size:15
Alignment explanation
Indices: 14068670--14068718 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
14068660 TAAAAGTAAA
14068670 AATTAAAATAATTAAT
1 AATTAAAATAA-TAAT
14068686 AATT-AAATAATAAT
1 AATTAAAATAATAAT
*
14068700 AATTAATAATAACAAT
1 AATTAA-AATAATAAT
14068716 AAT
1 AAT
14068719 ATTAAGAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 8 0.27
15 7 0.23
16 15 0.50
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (15 bp):
AATTAAAATAATAAT
Found at i:14069179 original size:131 final size:130
Alignment explanation
Indices: 14068915--14069436 Score: 607
Period size: 130 Copynumber: 4.0 Consensus size: 130
14068905 ATGAAGTTTG
* *
14068915 AAAGGAGATCTGCTCCGCTGCTCTTTAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACTA
1 AAAGG-GATATGCTCCGCTGCTCTTCAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACT-
* * * * * * *
14068980 CTCTTCAAGGTAGTTTGAATTGAGGCAGATTTGTTCCACCGCTCCTCAGGGAAAATCAAATATGA
64 GTTTTCAAGGAAGATTGAATTGAGGCAGATTTGTTCCACTGCTCCTCAGGGAAGATCAAATCTGA
14069045 AA
129 AA
* * * * * *
14069047 AAAGGGATATGCTCCTCCGCTCTTCAGGGTATATCAGATCTGGAAACGTTAATTCATTCCACTGT
1 AAAGGGATATGCTCCGCTGCTCTTCAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACTGT
* * * * *
14069112 TTTTAGGGAAGATTGAATTGGGGCAGATTTGTTTCATTGCTCCTCAGGGAAGATCAAATCTGAAA
66 TTTCAAGGAAGATTGAATTGAGGCAGATTTGTTCCACTGCTCCTCAGGGAAGATCAAATCTGAAA
* * * * * * *
14069177 AAAGGGATCTACTCCAG-TACTCTTCAGGGTAGAGCATATATGGAAACATTGATTCATTCCACTG
1 AAAGGGATATGCTCC-GCTGCTCTTCAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACTG
* * *
14069241 CTTTTCAAGGAAGATTGAATCGAGGTAGATTTGTTCCACTGCTCCTCAGGCAAGATCAAATCTGA
65 -TTTTCAAGGAAGATTGAATTGAGGCAGATTTGTTCCACTGCTCCTCAGGGAAGATCAAATCTGA
*
14069306 GA
129 AA
** * *
14069308 AAA-GGATATGCTCCGCTGCTCTTCAGGGTAGATCAGATCAAGAAACGTTGATTCACTCTACTGT
1 AAAGGGATATGCTCCGCTGCTCTTCAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACTGT
* * * * * * *
14069372 TCCTCAGGGAAAATTAAATTGAGGTAGATTTGTTCCACTACTCCTCAGTGAAGATCAAATCTGAA
66 T-TTCAAGGAAGATTGAATTGAGGCAGATTTGTTCCACTGCTCCTCAGGGAAGATCAAATCTGAA
14069437 GGTTTGGAAT
Statistics
Matches: 326, Mismatches: 60, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
129 3 0.01
130 208 0.64
131 110 0.34
132 5 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (130 bp):
AAAGGGATATGCTCCGCTGCTCTTCAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACTGT
TTTCAAGGAAGATTGAATTGAGGCAGATTTGTTCCACTGCTCCTCAGGGAAGATCAAATCTGAAA
Found at i:14069405 original size:261 final size:261
Alignment explanation
Indices: 14068935--14069436 Score: 682
Period size: 261 Copynumber: 1.9 Consensus size: 261
14068925 TGCTCCGCTG
* * * * *
14068935 CTCTTTAGGGTAGATCAGATCTGGAAACATTGATTCACTCCACTACTCTTCAAGGTAGTTTGAAT
1 CTCTTCAGGGTAGAGCAGATATGGAAACATTGATTCACTCCACTACTCTTCAAGGAAGATTGAAT
* * *
14069000 TGAGGCAGATTTGTTCCACCGCTCCTCAGGGAAAATCAAATATGAAAAAAGGGATATGCTCCTCC
66 CGAGGCAGATTTGTTCCACCGCTCCTCAGGCAAAATCAAATATGAAAAAAGGGATATGCTCCGCC
* ** * * * * *
14069065 GCTCTTCAGGGTATATCAGATCTGGAAACGTTAATTCATTCCACTGTTTTTAGGGAAGATTGAAT
131 GCTCTTCAGGGTAGATCAGATCAAGAAACGTTAATTCACTCCACTGTTCTCAGGGAAAATTAAAT
* * * *
14069130 TGGGGCAGATTTGTTTCATTGCTCCTCAGGGAAGATCAAATCTGAAAAAAGGGATCTACTCCAGT
196 TGAGGCAGATTTGTTCCACTACTCCTCAGGGAAGATCAAATCTGAAAAAAGGGATCTACTCCAGT
14069195 A
261 A
* * * *
14069196 CTCTTCAGGGTAGAGCATATATGGAAACATTGATTCATTCCACTGCTTTTCAAGGAAGATTGAAT
1 CTCTTCAGGGTAGAGCAGATATGGAAACATTGATTCACTCCACTACTCTTCAAGGAAGATTGAAT
* * * * * *
14069261 CGAGGTAGATTTGTTCCACTGCTCCTCAGGCAAGATCAAATCTGAGAAAA-GGATATGCTCCGCT
66 CGAGGCAGATTTGTTCCACCGCTCCTCAGGCAAAATCAAATATGAAAAAAGGGATATGCTCCGCC
* *
14069325 GCTCTTCAGGGTAGATCAGATCAAGAAACGTTGATTCACTCTACTGTTCCTCAGGGAAAATTAAA
131 GCTCTTCAGGGTAGATCAGATCAAGAAACGTTAATTCACTCCACTGTT-CTCAGGGAAAATTAAA
* *
14069390 TTGAGGTAGATTTGTTCCACTACTCCTCAGTGAAGATCAAATCTGAA
195 TTGAGGCAGATTTGTTCCACTACTCCTCAGGGAAGATCAAATCTGAA
14069437 GGTTTGGAAT
Statistics
Matches: 206, Mismatches: 34, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
260 54 0.26
261 152 0.74
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (261 bp):
CTCTTCAGGGTAGAGCAGATATGGAAACATTGATTCACTCCACTACTCTTCAAGGAAGATTGAAT
CGAGGCAGATTTGTTCCACCGCTCCTCAGGCAAAATCAAATATGAAAAAAGGGATATGCTCCGCC
GCTCTTCAGGGTAGATCAGATCAAGAAACGTTAATTCACTCCACTGTTCTCAGGGAAAATTAAAT
TGAGGCAGATTTGTTCCACTACTCCTCAGGGAAGATCAAATCTGAAAAAAGGGATCTACTCCAGT
A
Found at i:14069747 original size:42 final size:42
Alignment explanation
Indices: 14069664--14069750 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 42
14069654 TATTCTGCCC
* * *
14069664 AAAAGTCTTATGGATGGCCCAAAGAACTTATCATCTTGCTCG
1 AAAAGTCTTATAGATGGCCCAAAGAACTTAGCATCATGCTCG
* * *
14069706 AAAAG-CTTATAGATGGCCCGAAGGATTTAAGCATCATGCTCG
1 AAAAGTCTTATAGATGGCCCAAAGAACTT-AGCATCATGCTCG
14069748 AAA
1 AAA
14069751 GATTTATTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 19 0.50
42 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (42 bp):
AAAAGTCTTATAGATGGCCCAAAGAACTTAGCATCATGCTCG
Found at i:14069892 original size:41 final size:41
Alignment explanation
Indices: 14069831--14069953 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 41
14069821 CATGTGAAAA
* * * * *
14069831 CATCATGCCCGAAGGTCTTATAGATGGCCCAAAGGACTTAT
1 CATCATGCTCGAAAGACTTATAGATGGCCCAAATGACTTAG
* * * *
14069872 CATCTTGCTCGAAAGACTTATAGATGACCCGAATGATTTAAG
1 CATCATGCTCGAAAGACTTATAGATGGCCCAAATGACTT-AG
* *
14069914 CATCATGTTTGAAAGACTTA-ATGATGGCCCAAATGACTTA
1 CATCATGCTCGAAAGACTTATA-GATGGCCCAAATGACTTA
14069954 CTAAGTAAGA
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
41 33 0.51
42 32 0.49
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (41 bp):
CATCATGCTCGAAAGACTTATAGATGGCCCAAATGACTTAG
Found at i:14069912 original size:177 final size:176
Alignment explanation
Indices: 14069609--14069995 Score: 528
Period size: 177 Copynumber: 2.2 Consensus size: 176
14069599 ACTAAATGAT
* ** *
14069609 AAACTTTGAAAATTGTTTTCTCATTTTTTGGAAATCATGTGAAAATATTCTGCCCAAAAGTCTTA
1 AAACTTTGGAAATTGTTTTCTCA-TTTTTCAAAATCATGTGAAAACATTCTGCCCAAAAGTCTTA
* *
14069674 TGGATGGCCCAAAGAACTTATCATCTTGCTCGAAAAGCTTATAGATGGCCCGAAGGATTTAAGCA
65 TAGATGGCCCAAAGAACTTATCATCTTGCTCGAAAAGCTTATAGATGACCCGAAGGATTTAAGCA
* * **
14069739 TCATGCTCGAAAGATTTATTGATGGCATGAAGGACTTACTAAGTAAG
130 TCATGCTCGAAAGACTTAATGATGGCACAAAGGACTTACTAAGTAAG
* *
14069786 AAACTTTGGAAATTGTTTTCTCATTTTTCAAAACTCATGTGAAAACA-TCATGCCCGAAGGTCTT
1 AAACTTTGGAAATTGTTTTCTCATTTTTCAAAA-TCATGTGAAAACATTC-TGCCCAAAAGTCTT
* *
14069850 ATAGATGGCCCAAAGGACTTATCATCTTGCTCG-AAAGACTTATAGATGACCCGAATGATTTAAG
64 ATAGATGGCCCAAAGAACTTATCATCTTGCTCGAAAAG-CTTATAGATGACCCGAAGGATTTAAG
* * * *
14069914 CATCATGTTTGAAAGACTTAATGATGGCCCAAATGACTTACTAAGTAAG
128 CATCATGCTCGAAAGACTTAATGATGGCACAAAGGACTTACTAAGTAAG
* *
14069963 AAACTTTGGAAAATT-TTTTCTTACTTTTCAAAA
1 AAACTTTGG-AAATTGTTTTCTCATTTTTCAAAA
14069996 ATTTTATTTT
Statistics
Matches: 186, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
176 14 0.08
177 167 0.90
178 5 0.03
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (176 bp):
AAACTTTGGAAATTGTTTTCTCATTTTTCAAAATCATGTGAAAACATTCTGCCCAAAAGTCTTAT
AGATGGCCCAAAGAACTTATCATCTTGCTCGAAAAGCTTATAGATGACCCGAAGGATTTAAGCAT
CATGCTCGAAAGACTTAATGATGGCACAAAGGACTTACTAAGTAAG
Found at i:14070412 original size:58 final size:58
Alignment explanation
Indices: 14070334--14070536 Score: 218
Period size: 58 Copynumber: 3.5 Consensus size: 58
14070324 GTAGATAACT
*
14070334 TATCAAGAAACTTCTAAAAATCAGACTTAGCTTCTTTAAAATACATTTGAAAACATCA
1 TATCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAATACATTTGAAAACATCA
* * ** * * *
14070392 TGTCAAGAAACCTCTGAAAATCAGACTTAG-TT-TAAAAAAAAACTCATGTGGAGAAC-T--
1 TATCAAGAAACCTCTAAAAATCAGACTTAGCTTCT-TTAAAATA--CAT-TTGAAAACATCA
** ** *
14070449 TATCAAGAAATTTCTAAAAATTGGACTTAGCTTCTTTAAAATTCATTTGAAAACATCA
1 TATCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAATACATTTGAAAACATCA
14070507 TATCAAGAAACCTCTAAAAATCAGACTTAG
1 TATCAAGAAACCTCTAAAAATCAGACTTAG
14070537 GGGTTGTTTG
Statistics
Matches: 112, Mismatches: 24, Indels: 18
0.73 0.16 0.12
Matches are distributed among these distances:
55 6 0.05
56 5 0.04
57 31 0.28
58 59 0.53
59 5 0.04
60 6 0.05
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (58 bp):
TATCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAATACATTTGAAAACATCA
Found at i:14070439 original size:115 final size:115
Alignment explanation
Indices: 14070307--14070536 Score: 372
Period size: 115 Copynumber: 2.0 Consensus size: 115
14070297 TTCTTCTTTT
*
14070307 TTTAAAAAACAAATCATGTAGATAACTTATCAAGAAACTTCTAAAAATCAGACTTAGCTTCTTTA
1 TTTAAAAAACAAATCATGTAGAGAACTTATCAAGAAACTTCTAAAAATCAGACTTAGCTTCTTTA
* *
14070372 AAATACATTTGAAAACATCATGTCAAGAAACCTCTGAAAATCAGACTTAG
66 AAATACATTTGAAAACATCATATCAAGAAACCTCTAAAAATCAGACTTAG
* * **
14070422 TTTAAAAAA-AAACTCATGTGGAGAACTTATCAAGAAATTTCTAAAAATTGGACTTAGCTTCTTT
1 TTTAAAAAACAAA-TCATGTAGAGAACTTATCAAGAAACTTCTAAAAATCAGACTTAGCTTCTTT
*
14070486 AAAATTCATTTGAAAACATCATATCAAGAAACCTCTAAAAATCAGACTTAG
65 AAAATACATTTGAAAACATCATATCAAGAAACCTCTAAAAATCAGACTTAG
14070537 GGGTTGTTTG
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
114 3 0.03
115 103 0.97
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.30
Consensus pattern (115 bp):
TTTAAAAAACAAATCATGTAGAGAACTTATCAAGAAACTTCTAAAAATCAGACTTAGCTTCTTTA
AAATACATTTGAAAACATCATATCAAGAAACCTCTAAAAATCAGACTTAG
Found at i:14070789 original size:20 final size:21
Alignment explanation
Indices: 14070749--14070790 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
14070739 ACGCGCTGAA
14070749 TGCTGAATGGTTCAGCATTAAG
1 TGCTGAATGGTTCA-CATTAAG
14070771 TGCTGAATGGTTC-CATTAAG
1 TGCTGAATGGTTCACATTAAG
14070791 AGGCAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.35
22 13 0.65
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (21 bp):
TGCTGAATGGTTCACATTAAG
Found at i:14072715 original size:17 final size:18
Alignment explanation
Indices: 14072685--14072718 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14072675 GGTGATTGCA
14072685 TCTCTTTCTCTTTCAGTG
1 TCTCTTTCTCTTTCAGTG
*
14072703 TCTC-TTCTTTTTCAGT
1 TCTCTTTCTCTTTCAGT
14072719 TGTTTCCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.06, C:0.26, G:0.09, T:0.59
Consensus pattern (18 bp):
TCTCTTTCTCTTTCAGTG
Found at i:14081339 original size:2 final size:2
Alignment explanation
Indices: 14081332--14081465 Score: 268
Period size: 2 Copynumber: 67.0 Consensus size: 2
14081322 TGAAACATGC
14081332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14081374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14081416 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14081458 AT AT AT AT
1 AT AT AT AT
14081466 TCATAGGACT
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 132 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14082280 original size:18 final size:19
Alignment explanation
Indices: 14082239--14082277 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
14082229 TTGGTTCACA
14082239 GAATGTAAGATTACCAGTGG
1 GAATGTAAGATTACCAG-GG
*
14082259 GAATGTAAGATTATCAGGG
1 GAATGTAAGATTACCAGGG
14082278 AATATGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.26
Consensus pattern (19 bp):
GAATGTAAGATTACCAGGG
Found at i:14082503 original size:36 final size:36
Alignment explanation
Indices: 14082430--14082503 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
14082420 CAAGTTGGAA
**
14082430 AATATTTATATATTTTCTTTAAAAATTTAAATTTAT
1 AATATTTATATATTTTCTTTAAAAATTTAAAAATAT
14082466 AATATTTATATAATTTT-TTTACAAAA-TTAAAAATAT
1 AATATTTATAT-ATTTTCTTTA-AAAATTTAAAAATAT
14082502 AA
1 AA
14082504 AAAAAGATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 25 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (36 bp):
AATATTTATATATTTTCTTTAAAAATTTAAAAATAT
Found at i:14082867 original size:19 final size:19
Alignment explanation
Indices: 14082843--14082885 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
14082833 ATGTGCATTC
*
14082843 CATTCCCATGAAAATCCCA
1 CATTCCCACGAAAATCCCA
*
14082862 CATTCCCCCGAAAATCCCA
1 CATTCCCACGAAAATCCCA
14082881 CATTC
1 CATTC
14082886 TCCCATCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.33, C:0.42, G:0.05, T:0.21
Consensus pattern (19 bp):
CATTCCCACGAAAATCCCA
Found at i:14083905 original size:28 final size:28
Alignment explanation
Indices: 14083865--14083922 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
14083855 GTGATCATAT
14083865 AAACAAGCATGTTGAGGAACACTAAATG
1 AAACAAGCATGTTGAGGAACACTAAATG
14083893 AAACAAGCATGTTGAGGAACACTAAATG
1 AAACAAGCATGTTGAGGAACACTAAATG
14083921 AA
1 AA
14083923 TCAAACATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.17
Consensus pattern (28 bp):
AAACAAGCATGTTGAGGAACACTAAATG
Found at i:14093479 original size:18 final size:22
Alignment explanation
Indices: 14093456--14093498 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 22
14093446 TGAAATGGTT
14093456 AAATAA-ATAA-AA-AATAA-A
1 AAATAATATAATAATAATAACA
14093474 AAATAATATAATAATAATAACA
1 AAATAATATAATAATAATAACA
14093496 AAA
1 AAA
14093499 AACTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
20 2 0.10
21 5 0.24
22 4 0.19
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (22 bp):
AAATAATATAATAATAATAACA
Found at i:14093531 original size:31 final size:28
Alignment explanation
Indices: 14093496--14093572 Score: 84
Period size: 28 Copynumber: 2.6 Consensus size: 28
14093486 AATAATAACA
14093496 AAAAACTATATATTATAT-TTTCAAAAAAATT
1 AAAAACTATATATTATATGTTT---AAAAA-T
* **
14093527 AAAAACTATATACTATATGTTTTTAAAT
1 AAAAACTATATATTATATGTTTAAAAAT
14093555 AAAAACTATATATTATAT
1 AAAAACTATATATTATAT
14093573 ACGTTTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 18 0.44
29 3 0.07
31 17 0.41
32 3 0.07
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.40
Consensus pattern (28 bp):
AAAAACTATATATTATATGTTTAAAAAT
Found at i:14093566 original size:28 final size:29
Alignment explanation
Indices: 14093526--14093583 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
14093516 TCAAAAAAAT
14093526 TAAAAACTATATACTATAT-GTTTTTAAA
1 TAAAAACTATATACTATATAGTTTTTAAA
*
14093554 TAAAAACTATATATTATATACGTTTTTAAA
1 TAAAAACTATATACTATATA-GTTTTTAAA
14093584 ATGTTTTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
30 9 0.33
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (29 bp):
TAAAAACTATATACTATATAGTTTTTAAA
Found at i:14093623 original size:38 final size:36
Alignment explanation
Indices: 14093555--14093689 Score: 144
Period size: 40 Copynumber: 3.6 Consensus size: 36
14093545 GTTTTTAAAT
* *
14093555 AAAAACTATATATTATATACGTTTTTAAAATGTTTTC
1 AAAAACTATATATTATATA-TTTTTTAAAATATTTTC
*
14093592 TAAAACTATATATTATATATTTTTTCCAAAATATTTTC
1 AAAAACTATATATTATATATTTTTT--AAAATATTTTC
* *
14093630 AAAAACTATATATTATATGTGTTATTGAAAAAATATTTTC
1 AAAAACTATATATTATATAT-TT-TT--TAAAATATTTTC
* *
14093670 CAAATCTATATATTATATAT
1 AAAAACTATATATTATATAT
14093690 ATACTAAATA
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.06
37 18 0.22
38 28 0.34
39 2 0.02
40 30 0.36
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (36 bp):
AAAAACTATATATTATATATTTTTTAAAATATTTTC
Found at i:14093663 original size:40 final size:37
Alignment explanation
Indices: 14093555--14093689 Score: 153
Period size: 38 Copynumber: 3.5 Consensus size: 37
14093545 GTTTTTAAAT
* * *
14093555 AAAAACTATATATTATATACGTTTTTAAAATGTTTTC
1 AAAAACTATATATTATATATGTTTTAAAAATATTTTC
* * *
14093592 TAAAACTATATATTATATATTTTTTCCAAAATATTTTC
1 AAAAACTATATATTATATATGTTTT-AAAAATATTTTC
*
14093630 AAAAACTATATATTATATGTGTTATTGAAAAAATATTTTC
1 AAAAACTATATATTATATATGTT-TT--AAAAATATTTTC
* *
14093670 CAAATCTATATATTATATAT
1 AAAAACTATATATTATATAT
14093690 ATACTAAATA
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
37 22 0.27
38 30 0.37
39 2 0.02
40 28 0.34
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (37 bp):
AAAAACTATATATTATATATGTTTTAAAAATATTTTC
Found at i:14094099 original size:21 final size:21
Alignment explanation
Indices: 14094073--14094112 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14094063 ATTCAATTTC
14094073 AACATTGGAATTAAAATGATG
1 AACATTGGAATTAAAATGATG
14094094 AACATTGGAATTAAAATGA
1 AACATTGGAATTAAAATGA
14094113 ACATTATTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.05, G:0.17, T:0.28
Consensus pattern (21 bp):
AACATTGGAATTAAAATGATG
Found at i:14094114 original size:18 final size:20
Alignment explanation
Indices: 14094073--14094117 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
14094063 ATTCAATTTC
14094073 AACATTGGAATTAAAATGATG
1 AACATTGGAATTAAAA-GATG
14094094 AACATTGGAATT-AAA-ATG
1 AACATTGGAATTAAAAGATG
14094112 AACATT
1 AACATT
14094118 ATTCGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.38
20 3 0.12
21 12 0.50
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.29
Consensus pattern (20 bp):
AACATTGGAATTAAAAGATG
Found at i:14098202 original size:2 final size:2
Alignment explanation
Indices: 14098197--14098230 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14098187 ATTTTACCTA
14098197 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14098231 GTGTGTGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14099748 original size:41 final size:41
Alignment explanation
Indices: 14099668--14099774 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
14099658 AGAATCTAAT
* * * * * *
14099668 TTCACTACTCTTCCGCGAAGATCAGACTCGCAATTGGATTAC
1 TTCACTACGCTTCCGTGAAGGT-TGACTCGAAATCGGATTAC
*
14099710 TTCACTACGCTTTCGTGAAGGTTGACTCGAAATCGGATTAC
1 TTCACTACGCTTCCGTGAAGGTTGACTCGAAATCGGATTAC
*
14099751 TTCACTACTCTTCCGTGAAGGTTG
1 TTCACTACGCTTCCGTGAAGGTTG
14099775 CATACTTTGC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
41 38 0.68
42 18 0.32
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (41 bp):
TTCACTACGCTTCCGTGAAGGTTGACTCGAAATCGGATTAC
Found at i:14100048 original size:20 final size:20
Alignment explanation
Indices: 14100025--14100093 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
14100015 ACCCAAAGAA
*
14100025 TTTACAAATTACCCGAAGGC
1 TTTACAAATGACCCGAAGGC
*
14100045 TTTACAAATGACCCGAAGGT
1 TTTACAAATGACCCGAAGGC
*
14100065 TTTACAAATGACTCGAAGGC
1 TTTACAAATGACCCGAAGGC
14100085 TTTACAAAT
1 TTTACAAAT
14100094 TCATGGGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (20 bp):
TTTACAAATGACCCGAAGGC
Found at i:14100743 original size:22 final size:22
Alignment explanation
Indices: 14100678--14100746 Score: 102
Period size: 22 Copynumber: 3.1 Consensus size: 22
14100668 GCTTTCGTCT
*
14100678 TTGAAAAGAGAATCTATCATCT
1 TTGAAAAGAGAATCTATCATCC
* *
14100700 TTGAAAAGAGAGTCTAACATCC
1 TTGAAAAGAGAATCTATCATCC
*
14100722 TTGAAAATAGAATCTATCATCC
1 TTGAAAAGAGAATCTATCATCC
14100744 TTG
1 TTG
14100747 CAGAATATAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (22 bp):
TTGAAAAGAGAATCTATCATCC
Found at i:14100922 original size:57 final size:56
Alignment explanation
Indices: 14100835--14100944 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 56
14100825 GAAACACATT
* * *
14100835 ACAAGAATGATTTATCCTAATTCCTTTCATGTCTCGACATCT-AATCAGATCTCTTC
1 ACAAGAAAGATTTATCCTAATTCATTTCATGTCTCCACAT-TGAATCAGATCTCTTC
14100891 ACAAGAAAGATTTTATCCTAATTCATTTCATGTCTCCACATTGAATCAGATCTC
1 ACAAGAAAGA-TTTATCCTAATTCATTTCATGTCTCCACATTGAATCAGATCTC
14100945 AAGCAAAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 10 0.20
57 39 0.80
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (56 bp):
ACAAGAAAGATTTATCCTAATTCATTTCATGTCTCCACATTGAATCAGATCTCTTC
Found at i:14103243 original size:24 final size:24
Alignment explanation
Indices: 14103210--14103287 Score: 147
Period size: 24 Copynumber: 3.2 Consensus size: 24
14103200 CTTGAGCTAT
*
14103210 TTTTTTGATCAAATCATATCATCA
1 TTTTTCGATCAAATCATATCATCA
14103234 TTTTTCGATCAAATCATATCATCA
1 TTTTTCGATCAAATCATATCATCA
14103258 TTTTTCGATCAAATCATATCATCA
1 TTTTTCGATCAAATCATATCATCA
14103282 TTTTTC
1 TTTTTC
14103288 CTGACTGACA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (24 bp):
TTTTTCGATCAAATCATATCATCA
Found at i:14121381 original size:23 final size:23
Alignment explanation
Indices: 14121337--14121381 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14121327 AACATATTAG
**
14121337 GTAGCGCTTATATAATGTAATAT
1 GTAGCGCTTATATAATAAAATAT
*
14121360 GTAGTGCTTATATAATAAAATA
1 GTAGCGCTTATATAATAAAATA
14121382 GGTTAATTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (23 bp):
GTAGCGCTTATATAATAAAATAT
Found at i:14121608 original size:135 final size:135
Alignment explanation
Indices: 14121366--14121629 Score: 467
Period size: 135 Copynumber: 2.0 Consensus size: 135
14121356 ATATGTAGTG
*
14121366 CTTATATAATAAAATAGGTTAATTACTTAATTTGTTAGTATAACATATTAGGTAAACGCCTAAAA
1 CTTATATAATAAAATAGGTTAATTACTTAATTTGTTAGTACAACATATTAGGTAAACGCCTAAAA
*
14121431 TGTTACCAAGGATAACATAACCGGTTAATTACTGGAAACATTATAAAG-AAAATTAACATATTAG
66 TGTTACCAAGGATAACATAACCGATTAATTACTGGAAACATTATAAAGCAAAA-TAACATATTAG
14121495 GTAGCA
130 GTAGCA
*
14121501 CTTATATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAA
1 CTTATATAATAAAATAGGTTAATTACTTAATTTGTTAGTACAACATATTAGGTAAACGCCTAAAA
* *
14121566 TGTTACCAAGGATAACATAACCGATTAATTACTGGAAACATTATCAAGCATAATAACATATTAG
66 TGTTACCAAGGATAACATAACCGATTAATTACTGGAAACATTATAAAGCAAAATAACATATTAG
14121630 CTAACGCTTA
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
135 120 0.98
136 3 0.02
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (135 bp):
CTTATATAATAAAATAGGTTAATTACTTAATTTGTTAGTACAACATATTAGGTAAACGCCTAAAA
TGTTACCAAGGATAACATAACCGATTAATTACTGGAAACATTATAAAGCAAAATAACATATTAGG
TAGCA
Found at i:14124304 original size:200 final size:200
Alignment explanation
Indices: 14123950--14124335 Score: 632
Period size: 200 Copynumber: 1.9 Consensus size: 200
14123940 ATCATTATGT
* * **
14123950 ATCGATGCTTTTAATAAATGTATCGACACTTTATGTGTACATTTCGTTGGGCATTCATTCTGGAC
1 ATCGATACTTATAATAAATGTATCGACACTTTATGTGTACACCTCGTTGGGCATTCATTCTGGAC
* * * *
14124015 CAAAAGTATCGACACAAATTTAAAAAGTATCGATACATTATGTTGACCTATTCTGTCATAAAACT
66 CAAAAGTATCGACACAAATTTAAAAAGTATCAATACATTATGTTGACATATTCTCTCATAAAACC
* *
14124080 GGTATATTTTTACCAGTTACATTGTAAATTTACCTATTACTTTATTATTATCGGTTTCGATGTTT
131 GGTATATTTTTACCAGTTACATTGTAAATTTACATATTACTTTATAATTATCGGTTTCGATGTTT
14124145 TTGGG
196 TTGGG
*
14124150 ATCGATACTTATAATAAATGTATCGACACTTTATGTGTGCACCTCGTTGGGCA-TCAATTCTGGA
1 ATCGATACTTATAATAAATGTATCGACACTTTATGTGTACACCTCGTTGGGCATTC-ATTCTGGA
*
14124214 -CAACAAGTATCGATACAAATTTAAAAAGTATCAATACATTATGTTGACATATTCTCTCATAAAA
65 CCAA-AAGTATCGACACAAATTTAAAAAGTATCAATACATTATGTTGACATATTCTCTCATAAAA
14124278 CCGGTATATTTTTACCAGTTACATTGTAAATTTACATATTACTTTATAATTATCGGTT
129 CCGGTATATTTTTACCAGTTACATTGTAAATTTACATATTACTTTATAATTATCGGTT
14124336 ACATTGTAAA
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
199 5 0.03
200 167 0.97
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (200 bp):
ATCGATACTTATAATAAATGTATCGACACTTTATGTGTACACCTCGTTGGGCATTCATTCTGGAC
CAAAAGTATCGACACAAATTTAAAAAGTATCAATACATTATGTTGACATATTCTCTCATAAAACC
GGTATATTTTTACCAGTTACATTGTAAATTTACATATTACTTTATAATTATCGGTTTCGATGTTT
TTGGG
Found at i:14124671 original size:158 final size:158
Alignment explanation
Indices: 14124365--14124691 Score: 453
Period size: 158 Copynumber: 2.1 Consensus size: 158
14124355 TACCTATTTT
* *
14124365 TATCGATTACATTATGTTTGCCTATTCTCTCGTTAAACCGATATATTTTACCTATTACTTTATAA
1 TATCGA-TACATTATGTTTGCCTATTCTCTCATTAAACCGATATATTTTACCTAGTACTTTATAA
* * * *
14124430 TTATCAGTTTCAATGTTTTTGGGATCGATAGTTACAATAAATGTATCGACACTTTATGCGTGCAC
65 TAATCAGTTTCAATGTTTTTGGAATCGATACTTACAATAAATGCATCGACACTTTATGCGTGCAC
* *
14124495 CTCGTTGGGCATCTATTCTGGACAAAAAG
130 CTCGTTGGACATCTATTCTGGACAAAAAA
* *
14124524 TATCGATACATTATG-TTGACCTATTCTCTCATTAAACCGGTATATTTTACCTAGTAGTTTATAA
1 TATCGATACATTATGTTTG-CCTATTCTCTCATTAAACCGATATATTTTACCTAGTACTTTATAA
* * * *
14124588 TAATCGGTTTCGATG-TTTTGATAATCGATACTTACAATAAATGCATCGACACTTTATGTGTGCA
65 TAATCAGTTTCAATGTTTTTG-GAATCGATACTTACAATAAATGCATCGACACTTTATGCGTGCA
* *
14124652 TCTCGTTTGACAATC-ATTCTGGACAAAAAA
129 CCTCGTTGGAC-ATCTATTCTGGACAAAAAA
14124682 TATCGATACA
1 TATCGATACA
14124692 AATTTAAAAA
Statistics
Matches: 149, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
157 8 0.05
158 132 0.89
159 9 0.06
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (158 bp):
TATCGATACATTATGTTTGCCTATTCTCTCATTAAACCGATATATTTTACCTAGTACTTTATAAT
AATCAGTTTCAATGTTTTTGGAATCGATACTTACAATAAATGCATCGACACTTTATGCGTGCACC
TCGTTGGACATCTATTCTGGACAAAAAA
Found at i:14125114 original size:179 final size:179
Alignment explanation
Indices: 14124811--14125432 Score: 655
Period size: 179 Copynumber: 3.4 Consensus size: 179
14124801 TGTTTTTGGG
* * *
14124811 ATCGATACAAATTT-AAAATTATCGATACATTATGTTTACCTATTCTCTCATTAAACTGGTATAT
1 ATCGATACAAATTTAAAAAGTATCGATACATTATGTTAACCTATTCTCTCATTAAACCGGTATAT
* *
14124875 TTTACCTATTACTTTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATAATAAATGTAT
66 TTTACCTATTACTTTATAATAATCGGTTTCGATGTTTTTGGGATCGATACTTACAATAAATGTAT
* *
14124940 CAATACTTTATGTGTGCACCTCATTGGGCA-TCTATTCTGGACAAAAAGT
131 CAACACTTTATGCGTGCACCTCATTGGGCAGT-TATTCTGGACAAAAAGT
* *
14124989 ATCGATACAAATTTAAAAAGTATCGATACATTATGTTGACATATTCTCTCATTAAACCGGTATAT
1 ATCGATACAAATTTAAAAAGTATCGATACATTATGTTAACCTATTCTCTCATTAAACCGGTATAT
* *
14125054 TTTACCTATTAGTTTATAATAATCGGTTTTGATG-TTTTGAGGATCGATACTTACAATAAATGTA
66 TTTACCTATTACTTTATAATAATCGGTTTCGATGTTTTTG-GGATCGATACTTACAATAAATGTA
* * * *
14125118 TCGACACTTTATGCGTGCATCTCGTTTGGCAGTTATTCTGGACAAAAAGT
130 TCAACACTTTATGCGTGCACCTCATTGGGCAGTTATTCTGGACAAAAAGT
* * *
14125168 ATCGATACAAATTTAAAAAGTATCGATACATTATGTTAACCTATTCTGTCATAAAACCAGTATAT
1 ATCGATACAAATTTAAAAAGTATCGATACATTATGTTAACCTATTCTCTCATTAAACCGGTATA-
* * ** *
14125233 TTTTACCGTTACAATGTAAATTTACCTATTACTTTAT-AATTATCGGTTTCGATTTTTTGGGATC
65 TTTTACC--T---AT-T-ACTTTA--TA--A--TAATCGGTT-TC-G-AT-G--TTTTTGGGATC
* * * * * * *
14125297 -ACTACTTACAAGAAATGTATCAACATTTTATACGTGCACCTCATTGGG-AATCAATTTTGGACC
111 GA-TACTTACAATAAATGTATCAACACTTTATGCGTGCACCTCATTGGGCAGT-TATTCTGGACA
14125360 AAAAGT
174 AAAAGT
* * * * * *
14125366 ATCGACACAAATTT-AAAAGTATCGATAAATTATGTTAACATATTCTCTCATAAAACTGATATAT
1 ATCGATACAAATTTAAAAAGTATCGATACATTATGTTAACCTATTCTCTCATTAAACCGGTATAT
14125430 TTT
66 TTT
14125433 TAACGGTTAC
Statistics
Matches: 375, Mismatches: 43, Indels: 34
0.83 0.10 0.08
Matches are distributed among these distances:
178 19 0.05
179 201 0.54
180 8 0.02
182 1 0.00
185 2 0.01
186 1 0.00
187 5 0.01
189 2 0.01
191 1 0.00
192 2 0.01
193 4 0.01
194 1 0.00
195 1 0.00
196 5 0.01
197 46 0.12
198 71 0.19
199 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (179 bp):
ATCGATACAAATTTAAAAAGTATCGATACATTATGTTAACCTATTCTCTCATTAAACCGGTATAT
TTTACCTATTACTTTATAATAATCGGTTTCGATGTTTTTGGGATCGATACTTACAATAAATGTAT
CAACACTTTATGCGTGCACCTCATTGGGCAGTTATTCTGGACAAAAAGT
Found at i:14125432 original size:197 final size:199
Alignment explanation
Indices: 14125054--14125513 Score: 588
Period size: 198 Copynumber: 2.3 Consensus size: 199
14125044 ACCGGTATAT
* * * * *
14125054 TTTACCTATTAGTTTATAATAATCGGTTTTGATGTTTTGAGGATCGATACTTACAATAAATGTAT
1 TTTACCTATTACTTTATAATTATCGGTTTCGATTTTTTG-GGATCGATACTTACAAGAAATGTAT
* * * * * * *
14125119 CGACACTTTATGCGTGCATCTCGTTTGGCAGTTATTCTGGACAAAAAGTATCGATACAAATTTAA
65 CAACACTTTATACGTGCACCTCGATTGGCAATAATTCTGGACAAAAAGTATCGACACAAATTTAA
* * *
14125184 AAAGTATCGATACATTATGTTAACCTATTCTGTCATAAAACCAGTATATTTTT-ACCGTTACAAT
130 AAAGTATCGATAAATTATGTTAACATATTCTCTCATAAAACCAGTATATTTTTAACCGTTACAAT
14125248 GTAAA
195 GTAAA
14125253 TTTACCTATTACTTTATAATTATCGGTTTCGATTTTTTGGGATC-ACTACTTACAAGAAATGTAT
1 TTTACCTATTACTTTATAATTATCGGTTTCGATTTTTTGGGATCGA-TACTTACAAGAAATGTAT
* * * *
14125317 CAACATTTTATACGTGCACCTC-ATTGGGAATCAATTTTGGACCAAAAGTATCGACACAAATTT-
65 CAACACTTTATACGTGCACCTCGATTGGCAAT-AATTCTGGACAAAAAGTATCGACACAAATTTA
* *
14125380 AAAAGTATCGATAAATTATGTTAACATATTCTCTCATAAAA-CTGATATATTTTTAACGGTTACA
129 AAAAGTATCGATAAATTATGTTAACATATTCTCTCATAAAACCAG-TATATTTTTAACCGTTACA
*
14125444 TTGTAAA
193 ATGTAAA
* * * * * *
14125451 TTTACTTATTACTTTATAATTATTGGTTTCGATGTTTTTAGGATTGATACTTATAATAAATGT
1 TTTACCTATTACTTTATAATTATCGGTTTCGAT-TTTTTGGGATCGATACTTACAAGAAATGT
14125514 GTCGATACAT
Statistics
Matches: 227, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
196 2 0.01
197 54 0.24
198 112 0.49
199 58 0.26
200 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (199 bp):
TTTACCTATTACTTTATAATTATCGGTTTCGATTTTTTGGGATCGATACTTACAAGAAATGTATC
AACACTTTATACGTGCACCTCGATTGGCAATAATTCTGGACAAAAAGTATCGACACAAATTTAAA
AAGTATCGATAAATTATGTTAACATATTCTCTCATAAAACCAGTATATTTTTAACCGTTACAATG
TAAA
Found at i:14126930 original size:18 final size:18
Alignment explanation
Indices: 14126909--14126945 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14126899 CGAAATTTAG
14126909 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
14126927 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
14126945 A
1 A
14126946 CTCCAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:14126964 original size:24 final size:24
Alignment explanation
Indices: 14126909--14126964 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
14126899 CGAAATTTAG
14126909 ATTGAAATTCAAACTCAAATTGAA
1 ATTGAAATTCAAACTCAAATTGAA
* *
14126933 ATTTAAATTCAAACTCCAATT-AA
1 ATTGAAATTCAAACTCAAATTGAA
14126956 ATATGAAAT
1 AT-TGAAAT
14126965 GAACATGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.32
Consensus pattern (24 bp):
ATTGAAATTCAAACTCAAATTGAA
Found at i:14128379 original size:12 final size:12
Alignment explanation
Indices: 14128350--14128389 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
14128340 GTTTAGATCA
*
14128350 TCATCGTCATAGT
1 TCATCGTCAT-CT
14128363 T-ATCGTCATCT
1 TCATCGTCATCT
14128374 TCATCGTCATCT
1 TCATCGTCATCT
14128386 TCAT
1 TCAT
14128390 TGAGCGCTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 2 0.08
12 22 0.88
13 1 0.04
ACGTcount: A:0.20, C:0.28, G:0.10, T:0.42
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:14129504 original size:18 final size:17
Alignment explanation
Indices: 14129481--14129537 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
14129471 TTTGTTCAGA
14129481 AGAAGCGCTTGGTTGAGG
1 AGAAG-GCTTGGTTGAGG
14129499 AGAA-GCTTGTCGTTGA-G
1 AGAAGGCTTG--GTTGAGG
*
14129516 A-AAGGCTTGGTTGAGA
1 AGAAGGCTTGGTTGAGG
14129532 AGAAGG
1 AGAAGG
14129538 TTTAGGGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 11
0.73 0.02 0.24
Matches are distributed among these distances:
15 5 0.15
16 8 0.24
17 11 0.33
18 9 0.27
ACGTcount: A:0.28, C:0.09, G:0.40, T:0.23
Consensus pattern (17 bp):
AGAAGGCTTGGTTGAGG
Found at i:14130470 original size:200 final size:199
Alignment explanation
Indices: 14129848--14133127 Score: 3605
Period size: 200 Copynumber: 16.6 Consensus size: 199
14129838 GATACAATTT
* * * * * * * *
14129848 AAAAAGTTTCGATACAATATGTTTACCTATTCTCTCATAAAACCGGTATATTTTGACCGATTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATATTCT-ACCGGTTACA
* * * * ** *
14129913 TTGTAAATTTACATATTACATTATAATTATCGGTTTCAATGTTTTTAGGATCGGTA-AAATTTTA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* *
14129977 AATTTATCGACACTTTATGCGTGCACCTCGTTGGGAATTCATTCTGGACCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC-
*
14130042 AAT-TT
194 AATGTA
* * * * * * *
14130047 AAAATGTGTTGATACATTATGTTGACCTATTCTCTCATAAAACAT-GTATATTTTTACTGGTTAC
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAAC-TGGTATA-TTCTACCGGTTAC
* * *
14130111 ATTGTAAACTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-AATTTT
64 ATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
* * * * * * * *
14130175 AAATGTATCAACACTCTATGTGCGCACCTCATTGGGCATTCATTATGGGCCAAAAGTATCGCCAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
*
14130240 AAAT-TT
194 -AATGTA
* * * * *
14130246 AAAACGTGTCGATACATTATGTTGACTTATTTTCTAATTAAACTGATATATTCTGACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATATTCT-ACCGGTTACA
* * *
14130311 TTATAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTATTGGGATCGATACTTATTATA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* * * *
14130376 AATGTATCGTCACTTTATGTGTGCACCTCATTGGGCATTCATTATGGACCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
14130441 ATGTA
195 ATGTA
* * *
14130446 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATA-TTCTACCGGTTACA
* * * * **
14130511 TTGTAAATTTACCTATTAC-TATATAATAATTGGTTTTGATG-TTTTGAGGATCGATAATTACAA
65 TTGTAAATTTACCTATTACAT-TATAATTATCGGTTTCGATGTTTTTG-GGATCGATACTTATTA
* *
14130574 TAAATGTATCGACACTTTATGCATGCATCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACA
128 TAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACA
*
14130639 CAAAGTA
193 CAATGTA
* * * * * *
14130646 AAAAAGTATTGATACATTATGTTGACCTATTTTCTAATTAGACCGGTATATTTTACCGGATACAT
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATATTCTACCGGTTACAT
* * *
14130711 TTTAAATTTACCTATTACATTATAATTATCGG-TTCTGATGTTCTTGGGATCGTTACTTATTATA
66 TGTAAATTTACCTATTACATTATAATTATCGGTTTC-GATGTTTTTGGGATCGATACTTATTATA
* *
14130775 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGAATTCATTCTGGACAAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
14130840 ATGTA
195 ATGTA
* * * *
14130845 AAAAAGTATCGATACATTATGTTGACCTATTCTGTCATAAAACCGGTATATTTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATA-TTCTACCGGTTACA
* * ** * **
14130910 TTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTTTAAGTATCGATACTTACAATA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* * *
14130975 ACTGTATCGACACTTTATGTGTGCACCTCGTTGGGCATTCATTCTGGAGCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC-
*
14131040 AAT-TT
194 AATGTA
* * * *
14131045 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCA-TACAACCGGTATATTTTTACTGGTTAC
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTA-AACTGGTATA-TTCTACCGGTTAC
* * * * * * *
14131109 ATTGTAAATTTACATATTACATTATAATTATCAGTTTCAATATTTTTGGGATCAATAC-AATTTT
64 ATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
* * * *
14131173 AAATGTATCAACACTTTATGTGTACACCACGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
*
14131238 AAAT-TT
194 -AATGTA
* * **
14131244 AAAAAGTATCGATACATTATGTTGACCAATTTTCTAATTAAACTGGTATATTCTGACTAGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATATTCT-ACCGGTTACA
* * * * * * * *
14131309 TTGTAAATTTGCCTATAACATTATAATTATCAGTTTCTATATTAATT-GGATCAATACTTGTTAT
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT-TTTGGGATCGATACTTATTAT
* * *
14131373 AAATGTATCGACACTTTATGCGCGCACCTCGTTGGGCATTCATTCTAGACCAAAAGTATCGATAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
14131438 AATGTA
194 AATGTA
* * * *
14131444 AAAACGTATCGATACATTATGTTGACCTATTCTCTTA-TAAAATCGGTATATTTATACCGGTTAC
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACT-GGTATA-TTCTACCGGTTAC
* * * ** * **
14131508 ATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCTATGTTTTAAGGATCAATACTTACAAT
64 ATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
* *
14131573 AAATGTATCGACACTTTATGCGTTCATCTCGTT-----TTCATTCTGGACCAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
14131633 AATGTA
194 AATGTA
* *
14131639 AAAAAGTATCGATACATTATGTTGACCTATTTTCAAATTAAA-TCGGTATATTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACT-GGTATATTCTACCGGTTACA
* * * * *
14131703 TTTTAAATTTACCTATTATATTATAATTATTGGTTTCGATGTTTTTGGGATCGACAC-T-TTATG
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
** * * * * **** * * * *
14131766 CGTCGT-TGGGCA-TTCATTC-TGGACAAAAAGTATCGACA--CA--ATGTA--ATAAAGTATCG
130 AAT-GTATCGACACTTTATGCGT-G-CACCTCGT-TGGGCATTCATTCTGGACCA-AAAGTATCG
* *
14131822 ATA-TAT-T-
190 ACACAATGTA
* * * * * * *
14131829 ----A-TATTG--AC-CTA--TT---CT-GTC-ATAA--AACCGGTATAT-TTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTG-GTATATTCTACCGGTTACA
* * * **
14131876 TTGTAAATTTACCTATTGCTTTATAATAATCGGTTTCGATG-TTTTGAGGATCGATACTTACAAT
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG-GGATCGATACTTATTAT
* * *
14131940 AAATGTATCGACACTTTATGTGTGCACCTCATTGGGCATTCATTCTGGAACAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
*
14132005 AAAT-TT
194 -AATGTA
* * ** * * **
14132011 AAAATGTGTCGATACATTATGTTGACCTATTCTCTCGTAAAACAT-GTATATTTTTATTGGTTAC
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAAC-TGGTATA-TTCTACCGGTTAC
* * * *
14132075 ATTGTAAATTTACCTATTACATTATAATTATCCGTTTCGATGTTTTTGGGATTGATAC-AATTTT
64 ATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
* * * *
14132139 AAATGCATCGATACTTTATGCGTGAACCTCGTTGGGCATTCATTCTGGACCAAAAGAATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
*
14132204 AAATTTA
194 -AATGTA
** * * *
14132211 AAAAA-TGCCGATACATTATGATGACCTATTTTCTAATTAAA-TCGGTATATTCTGACCGATTAC
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACT-GGTATATTCT-ACCGGTTAC
* * *
14132274 ATTGTAAATTTACCTATTA-ATTATAATTATCAGTTTCGATGTTATTGGGATCAATACTTATTAT
64 ATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
14132338 AAATGTATCGACAC--TATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
*
14132401 AATATA
194 AATGTA
* * *
14132407 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACTGGTATATTTCTACAGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATA-TTCTACCGGTTACA
* * * *
14132472 TTGTAAATTTACCTATTACTTTATAATAATCGGTTTTGATG-TTTTGAGGATCGATACTTA-CAG
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG-GGATCGATACTTATTA-
* *
14132535 TAAATGTATCGACACTTTATGCGTGCATCTCGTTGGGCATTCATTCTGTACCAAAAGTATCGACA
128 TAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACA
14132600 CAATGTA
193 CAATGTA
* * * * *
14132607 AAAAAGTATCGATTCGTTTTATTGACCTATTTTCTAATTAAA-TCGGTATATTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACT-GGTATATTCTACCGGTTACA
* **
14132671 TTGTAAATTTACCTATTGCGCTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* *
14132736 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGACATA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
14132801 ATGTA
195 ATGTA
* * * * * *
14132806 AAAAAGTATTGATACATTATGTTGACCTATTTTGTCATAAAACTGGTATATTTCTACCGATTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATA-TTCTACCGGTTACA
* * ** **
14132871 TTGTAAATTTACCTATTACTTTATAATAATCAATTTCGATG-TTTTGAGGATCGATACTTACAAT
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG-GGATCGATACTTATTAT
* * *
14132935 AAATGTATCGACACTTTATGCGTGCATCTCGTTTGGTATTCATTCTGGACCAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
*
14133000 AAAT-TT
194 -AATGTA
* *
14133006 AAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATTAAACTGGTATATTTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATA-TTCTACCGGTTACA
* *
14133071 TTGTAAATTTATCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGATCGATAC
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC
14133128 AATTTTAAAA
Statistics
Matches: 2609, Mismatches: 377, Indels: 189
0.82 0.12 0.06
Matches are distributed among these distances:
172 5 0.00
173 61 0.02
174 10 0.00
175 12 0.00
176 8 0.00
177 3 0.00
178 3 0.00
179 11 0.00
180 3 0.00
181 3 0.00
182 2 0.00
183 2 0.00
185 4 0.00
186 1 0.00
187 3 0.00
189 2 0.00
190 3 0.00
191 6 0.00
192 16 0.01
193 15 0.01
194 63 0.02
195 74 0.03
196 18 0.01
197 116 0.04
198 99 0.04
199 945 0.36
200 1095 0.42
201 26 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (199 bp):
AAAAAGTATCGATACATTATGTTGACCTATTCTCTAATTAAACTGGTATATTCTACCGGTTACAT
TGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATAA
ATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACAA
TGTA
Found at i:14130725 original size:399 final size:398
Alignment explanation
Indices: 14129848--14133127 Score: 3982
Period size: 399 Copynumber: 8.3 Consensus size: 398
14129838 GATACAATTT
* * * * * * *
14129848 AAAAAGTTTCGATACAATATGTTTACCTATTCTCTCATAAAACCGGTATATTTTGACCGATTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTTT-ACCGGTTACA
* * * * ** *
14129913 TTGTAAATTTACATATTACATTATAATTATCGGTTTCAATGTTTTTAGGATCGGTA-AAATTTTA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* *
14129977 AATTTATCGACACTTTATGCGTGCACCTCGTTGGGAATTCATTCTGGACCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC-
* * * * ** * *
14130042 AAT-TTAAAATGTGTTGATACATTATGTTGACCTATTCTCTCATAAAACATGTATATTTTTACTG
194 AATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCG
* *
14130106 GTTACATTGTAAACTTACCTATTAC-ATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-
259 GTTACATTGTAAATTTACCTATTACTA-TATAATAATCGGTTTCGATG-TTTTGGGATCGATACT
* *** * * * * * * *
14130169 AATTTTAAATGTATCAACACTCTATGTGCGCACCTCATTGGGCATTCATTATGGGCCAAAAGTAT
322 TACAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTAT
* * *
14130234 CGCCACAAATTT
387 CGACACAAAGTA
* * * * * *
14130246 AAAACGTGTCGATACATTATGTTGACTTATTTTCTAATTAAACTGATATATTCTGACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATT-TTACCGGTTACA
* * *
14130311 TTATAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTATTGGGATCGATACTTATTATA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* * * *
14130376 AATGTATCGTCACTTTATGTGTGCACCTCATTGGGCATTCATTATGGACCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
14130441 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGG
195 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGG
* * *
14130506 TTACATTGTAAATTTACCTATTACTATATAATAATTGGTTTTGATGTTTTGAGGATCGATAATTA
260 TTACATTGTAAATTTACCTATTACTATATAATAATCGGTTTCGATGTTTTG-GGATCGATACTTA
* *
14130571 CAATAAATGTATCGACACTTTATGCATGCATCTCGTTGGGCATTCATTCTGGACCAAAAGTATCG
324 CAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCG
14130636 ACACAAAGTA
389 ACACAAAGTA
* * *
14130646 AAAAAGTATTGATACATTATGTTGACCTATTTTCTAATTAGACCGGTATATTTTACCGGATACAT
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTTTACCGGTTACAT
* * *
14130711 TTTAAATTTACCTATTACATTATAATTATCGG-TTCTGATGTTCTTGGGATCGTTACTTATTATA
66 TGTAAATTTACCTATTACATTATAATTATCGGTTTC-GATGTTTTTGGGATCGATACTTATTATA
* *
14130775 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGAATTCATTCTGGACAAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
*
14130840 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTGTCATAAAACCGGTATATTTCTACCGG
195 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGG
* * *
14130905 TTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTTTAAGTATCGATACTTA
260 TTACATTGTAAATTTACCTATTACTATATAATAATCGGTTTCGATGTTTT-GGGATCGATACTTA
* * *
14130970 CAATAACTGTATCGACACTTTATGTGTGCACCTCGTTGGGCATTCATTCTGGAGCAAAAGTATCG
324 CAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCG
* *
14131035 ACACAAATTT
389 ACACAAAGTA
* * *
14131045 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCA-TACAACCGGTATATTTTTACTGGTTAC
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTA-AACCGGTATA-TTTTACCGGTTAC
* * * * * * *
14131109 ATTGTAAATTTACATATTACATTATAATTATCAGTTTCAATATTTTTGGGATCAATAC-AATTTT
64 ATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
* * * *
14131173 AAATGTATCAACACTTTATGTGTACACCACGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
* * * * * *
14131238 AAAT-TTAAAAAGTATCGATACATTATGTTGACCAATTTTCTAATTAAACTGGTATA-TTCTGAC
194 -AATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCT-AC
** * * * * * * *
14131301 TAGTTACATTGTAAATTTGCCTATAAC-ATTATAATTATCAGTTTCTATATTAATT-GGATCAAT
257 CGGTTACATTGTAAATTTACCTATTACTA-TATAATAATCGGTTTCGATGTT--TTGGGATCGAT
*** * *
14131364 ACTTGTTATAAATGTATCGACACTTTATGCGCGCACCTCGTTGGGCATTCATTCTAGACCAAAAG
319 ACTTACAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAG
* *
14131429 TATCGATACAATGTA
384 TATCGACACAAAGTA
* * * * *
14131444 AAAACGTATCGATACATTATGTTGACCTATTCTCTTATAAAATCGGTATATTTATACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTT-TACCGGTTACA
* * * ** * **
14131509 TTGTAAATTTACCTATTACTTTATAATAATCGGTTTCTATGTTTTAAGGATCAATACTTACAATA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
* *
14131574 AATGTATCGACACTTTATGCGTTCATCTCGTT-----TTCATTCTGGACCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
* ** * *
14131634 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTTTCAAATTAAATCGGTATA-TTCTACCGG
195 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGG
* * *
14131698 TTACATTTTAAATTTACCTATTA-TATTATAATTATTGGTTTCGATGTTTT----T-G-------
260 TTACATTGTAAATTTACCTATTACTA-TATAATAATCGGTTTCGATGTTTTGGGATCGATACTTA
* *
14131750 --------GGATCGACACTTTATGC--G----TCGTTGGGCATTCATTCTGGACAAAAAGTATCG
324 CAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCG
*
14131801 ACACAATGTA
389 ACACAAAGTA
* * * * * * *
14131811 ATAAAGTATCGATATATTATATTGACCTATTCTGTCATAAAACCGGTATATTTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTT-TACCGGTTACA
* * * **
14131876 TTGTAAATTTACCTATTGCTTTATAATAATCGGTTTCGATG-TTTTGAGGATCGATACTTACAAT
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG-GGATCGATACTTATTAT
* * *
14131940 AAATGTATCGACACTTTATGTGTGCACCTCATTGGGCATTCATTCTGGAACAAAAGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACAC
* * * * ** * **
14132005 AAAT-TTAAAATGTGTCGATACATTATGTTGACCTATTCTCTCGTAAAACATGTATATTTTTATT
194 -AATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACC
* * *
14132069 GGTTACATTGTAAATTTACCTATTAC-ATTATAATTATCCGTTTCGATGTTTTTGGGATTGATAC
258 GGTTACATTGTAAATTTACCTATTACTA-TATAATAATCGGTTTCGATG-TTTTGGGATCGATAC
* *** * * * *
14132133 -AATTTTAAATGCATCGATACTTTATGCGTGAACCTCGTTGGGCATTCATTCTGGACCAAAAGAA
321 TTACAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTA
*
14132197 TCGACACAAATTTA
386 TCGACACAAA-GTA
** * * * *
14132211 AAAAA-TGCCGATACATTATGATGACCTATTTTCTAATTAAATCGGTATATTCTGACCGATTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATT-TTACCGGTTACA
* * *
14132275 TTGTAAATTTACCTATTA-ATTATAATTATCAGTTTCGATGTTATTGGGATCAATACTTATTATA
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
14132339 AATGTATCGACAC--TATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACA
* * *
14132402 ATATAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACTGGTATATTTCTACAGG
195 ATGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGG
* *
14132467 TTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTTGATGTTTTGAGGATCGATACTTA
260 TTACATTGTAAATTTACCTATTACTATATAATAATCGGTTTCGATGTTTTG-GGATCGATACTTA
* * *
14132532 CAGTAAATGTATCGACACTTTATGCGTGCATCTCGTTGGGCATTCATTCTGTACCAAAAGTATCG
324 CAATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCG
*
14132597 ACACAATGTA
389 ACACAAAGTA
* * * * * *
14132607 AAAAAGTATCGATTCGTTTTATTGACCTATTTTCTAATTAAATCGGTATATTCTACCGGTTACAT
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTTTACCGGTTACAT
* **
14132672 TGTAAATTTACCTATTGCGCTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATAA
66 TGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATAA
* *
14132737 ATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGACATAA
131 ATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACAA
* * * * *
14132802 TGTAAAAAAGTATTGATACATTATGTTGACCTATTTTGTCATAAAACTGGTATATTTCTACCGAT
196 TGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGGT
* **
14132867 TACATTGTAAATTTACCTATTACTTTATAATAATCAATTTCGATGTTTTGAGGATCGATACTTAC
261 TACATTGTAAATTTACCTATTACTATATAATAATCGGTTTCGATGTTTTG-GGATCGATACTTAC
* * *
14132932 AATAAATGTATCGACACTTTATGCGTGCATCTCGTTTGGTATTCATTCTGGACCAAAAGTATCGA
325 AATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGA
* *
14132997 CACAAATTT
390 CACAAAGTA
* *
14133006 AAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATTAAACTGGTATATTTCTACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTT-TACCGGTTACA
* *
14133071 TTGTAAATTTATCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGATCGATAC
65 TTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC
14133128 AATTTTAAAA
Statistics
Matches: 2493, Mismatches: 321, Indels: 134
0.85 0.11 0.05
Matches are distributed among these distances:
366 3 0.00
367 181 0.07
371 1 0.00
372 67 0.03
373 67 0.03
374 4 0.00
378 1 0.00
379 1 0.00
389 1 0.00
392 2 0.00
393 15 0.01
394 46 0.02
395 87 0.03
396 182 0.07
397 156 0.06
398 167 0.07
399 1239 0.50
400 268 0.11
401 5 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (398 bp):
AAAAAGTATCGATACATTATGTTGACCTATTTTCTAATTAAACCGGTATATTTTACCGGTTACAT
TGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATAA
ATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGACACAA
TGTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATAAAACCGGTATATTTCTACCGGT
TACATTGTAAATTTACCTATTACTATATAATAATCGGTTTCGATGTTTTGGGATCGATACTTACA
ATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACCAAAAGTATCGAC
ACAAAGTA
Found at i:14131892 original size:173 final size:171
Alignment explanation
Indices: 14131606--14131934 Score: 484
Period size: 172 Copynumber: 1.9 Consensus size: 171
14131596 TCATCTCGTT
* *
14131606 TTCATTCTGGACCAAAAGTATCGACACAATGTAAAAAAGTATCGATACATTATGTTGACCTATTT
1 TTCATTCTGGACAAAAAGTATCGACACAATGTAAAAAAGTATCGATACATTATATTGACCTATTT
* * * * *
14131671 TCAAATTAAATCGGTATATTCTACCGGTTACATTTTAAATTTACCTATT-ATATTATAATTATTG
66 TC-AATAAAACCGGTATATTCTACCGGTTACATTGTAAATTTACCTATTGAT-TTATAATAATCG
14131735 GTTTCGATGTTTTTG-GGATCGACACTTTATGCGTCGTTGGGCA
129 GTTTCGATG-TTTTGAGGATCGACACTTTATGCGTCGTTGGGCA
* *
14131778 TTCATTCTGGACAAAAAGTATCGACACAATGTAATAAAGTATCGATATATTATATTGACCTATTC
1 TTCATTCTGGACAAAAAGTATCGACACAATGTAAAAAAGTATCGATACATTATATTGACCTATT-
*
14131843 TGTC-ATAAAACCGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTGCTTTATAATAATC
65 T-TCAATAAAACCGGTATA-TTCTACCGGTTACATTGTAAATTTACCTATTGATTTATAATAATC
*
14131907 GGTTTCGATGTTTTGAGGATCGATACTT
128 GGTTTCGATGTTTTGAGGATCGACACTT
14131935 ACAATAAATG
Statistics
Matches: 141, Mismatches: 11, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
172 77 0.55
173 61 0.43
174 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (171 bp):
TTCATTCTGGACAAAAAGTATCGACACAATGTAAAAAAGTATCGATACATTATATTGACCTATTT
TCAATAAAACCGGTATATTCTACCGGTTACATTGTAAATTTACCTATTGATTTATAATAATCGGT
TTCGATGTTTTGAGGATCGACACTTTATGCGTCGTTGGGCA
Found at i:14140568 original size:182 final size:181
Alignment explanation
Indices: 14140376--14140960 Score: 706
Period size: 182 Copynumber: 3.2 Consensus size: 181
14140366 TTTCGAGACT
** * *
14140376 GATTTTGTCATATTTTTACCTACTATATTGTTATGGATCGATACATTTTTATAAAATATCGATAC
1 GATTTTGTCATATTTTTACCTGTTATATTGTTATGTATCGATACATATTTATAAAATATCGATAC
* *
14140441 TTTATAGGCGCTATTACTGTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCAATGGAATC
66 TTTTTAGGCGCTATTACTGTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGGAATC
* * *
14140506 GATACTTTCAACATATCCGATATG-ACTTTACTAGTTTTGTCATAATGAAATC
131 GATACTTTCAACATATCAGATA-GCACTTTACCAG-TTTGTCATAATGAAACC
* * ** * * *
14140558 GGTTTTGTCATACTTTTACCTGTTATATTGAGATGTATCGAAAAATATTTATAAAGTATCGATAC
1 GATTTTGTCATATTTTTACCTGTTATATTGTTATGTATCGATACATATTTATAAAATATCGATAC
*
14140623 TTTTTAGGCGCTATTACTGTTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGAAAT
66 TTTTTAGGCGCTATTACTG-TTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGGAAT
* * * *
14140688 CGATACTTTCAACATATCTGGTAGCGCTTTACCAGTTTGTCATTATGAAACC
130 CGATACTTTCAACATATCAGATAGCACTTTACCAGTTTGTCATAATGAAACC
* * * * * * *
14140740 GATTTTATCATATTTTTACATGTTATATTATTGTGTATTGATACATGTTTATAAATTATCGATAC
1 GATTTTGTCATATTTTTACCTGTTATATTGTTATGTATCGATACATATTTATAAAATATCGATAC
* * * * *
14140805 TTTTTAGGCGCTATTACTACTTTTCTTTTAAA-CCCTAAAAGTGTCGATACTTTTTTTAATAGAA
66 TTTTTAGGCGCTATTACT-GTTTTCTTTTAAATTCC-AAAAGTGTCGATACTTATTTAAATGGAA
* * * * *
14140869 TCGATACTTTCAACATATCAGATAGCGCTTTATCGGTTTTGTCATATTGAACCC
129 TCGATACTTTCAACATATCAGATAGCACTTTACCAG-TTTGTCATAATGAAACC
* * * * * *
14140923 AAGTTTCTCATATTTTTACCTGATATATTATAATGTAT
1 GATTTTGTCATATTTTTACCTGTTATATTGTTATGTAT
14140961 TAATATATAT
Statistics
Matches: 345, Mismatches: 53, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
181 2 0.01
182 226 0.66
183 117 0.34
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (181 bp):
GATTTTGTCATATTTTTACCTGTTATATTGTTATGTATCGATACATATTTATAAAATATCGATAC
TTTTTAGGCGCTATTACTGTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGGAATC
GATACTTTCAACATATCAGATAGCACTTTACCAGTTTGTCATAATGAAACC
Found at i:14143806 original size:19 final size:19
Alignment explanation
Indices: 14143782--14143828 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
14143772 AAAATCACAA
*
14143782 TGCGATTTCTAATTCGCAT
1 TGCGATCTCTAATTCGCAT
14143801 TGCGATCTCTAATTCGCAT
1 TGCGATCTCTAATTCGCAT
14143820 TGCGATCTC
1 TGCGATCTC
14143829 CACTATCGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (19 bp):
TGCGATCTCTAATTCGCAT
Found at i:14143890 original size:22 final size:21
Alignment explanation
Indices: 14143865--14143936 Score: 85
Period size: 22 Copynumber: 3.4 Consensus size: 21
14143855 TTCCAGTTCG
14143865 CGTTGCGATAGTCTATAGTTGT
1 CGTTGCGATAGTCTA-AGTTGT
** *
14143887 CGTTGCGATTTTCTAA-AT-T
1 CGTTGCGATAGTCTAAGTTGT
14143906 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTA-AGTTGT
14143928 CGTTGCGAT
1 CGTTGCGAT
14143937 TTTTCAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
19 14 0.34
20 2 0.05
21 2 0.05
22 23 0.56
ACGTcount: A:0.18, C:0.17, G:0.25, T:0.40
Consensus pattern (21 bp):
CGTTGCGATAGTCTAAGTTGT
Found at i:14143910 original size:19 final size:19
Alignment explanation
Indices: 14143886--14143954 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
14143876 TCTATAGTTG
14143886 TCGTTGCGATTTTCTAAAT
1 TCGTTGCGATTTTCTAAAT
** *
14143905 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGATTTTCTA-A-AT
14143926 GTCGTTGCGATTTT-TCAAAT
1 -TCGTTGCGATTTTCT-AAAT
*
14143946 TCTTTGCGA
1 TCGTTGCGA
14143955 AAATCGCGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
19 22 0.56
20 2 0.05
21 3 0.08
22 12 0.31
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.43
Consensus pattern (19 bp):
TCGTTGCGATTTTCTAAAT
Found at i:14143917 original size:41 final size:41
Alignment explanation
Indices: 14143865--14143954 Score: 146
Period size: 41 Copynumber: 2.2 Consensus size: 41
14143855 TTCCAGTTCG
*
14143865 CGTTGCGATAGTCTATAGTTGTCGTTGCGA-TTTTCTAAATT
1 CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTC-AAATT
14143906 CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATT
1 CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATT
*
14143947 CTTTGCGA
1 CGTTGCGA
14143955 AAATCGCGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 41 0.89
42 5 0.11
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (41 bp):
CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATT
Found at i:14144028 original size:20 final size:20
Alignment explanation
Indices: 14143979--14144030 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
14143969 TAGTTGAAAA
* *
14143979 TCGCGTTGCAATTTTTCATT
1 TCGCGTTGCGATTTTCCATT
14143999 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
14144019 TCGCGTTGCGAT
1 TCGCGTTGCGAT
14144031 AGTCTACAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:14144069 original size:61 final size:60
Alignment explanation
Indices: 14143889--14144077 Score: 180
Period size: 61 Copynumber: 3.2 Consensus size: 60
14143879 ATAGTTGTCG
* *
14143889 TTGCGATTTTCTAAAT-TCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATTCT
1 TTGCGATTTTC-AAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATTCA
* * * * * *
14143949 TTGCGA-----AAATCGCGTTGCGATAGT-TGAAAATCG-CGTTGCAATTTTTC-ATTTCGCG
1 TTGCGATTTTCAAATCGCGTTGCGATAGTCT-ACAGTTGTCGTTGCGATTTTTCAAATT--CA
**
14144004 TTGCGATTTTCCATTTCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATTCA
1 TTGCGATTTT-CAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATTCA
14144065 TTGCGATTTTCAA
1 TTGCGATTTTCAA
14144078 CTATAGCAAC
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
53 3 0.03
54 18 0.18
55 23 0.23
60 8 0.08
61 31 0.31
62 14 0.14
63 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (60 bp):
TTGCGATTTTCAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATTCA
Found at i:14144108 original size:20 final size:20
Alignment explanation
Indices: 14144083--14144152 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
14144073 TTCAACTATA
14144083 GCAACGCGAAATGGAAAATC
1 GCAACGCGAAATGGAAAATC
** ** *
14144103 GCAACGCGATTTTCAACTATC
1 GCAACGCGAAATGGAA-AATC
14144124 GCAACGCGAAATGGAAAATC
1 GCAACGCGAAATGGAAAATC
*
14144144 GTAACGCGA
1 GCAACGCGA
14144153 TTTTCAACTA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
20 23 0.61
21 15 0.39
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
GCAACGCGAAATGGAAAATC
Found at i:14144181 original size:21 final size:21
Alignment explanation
Indices: 14144075--14144181 Score: 83
Period size: 21 Copynumber: 5.2 Consensus size: 21
14144065 TTGCGATTTT
*
14144075 CAACTATAGCAACGCGAAATG
1 CAACTATCGCAACGCGAAATG
* * ** *
14144096 GAA-AATCGCAACGCGATTTT
1 CAACTATCGCAACGCGAAATG
14144116 CAACTATCGCAACGCGAAATG
1 CAACTATCGCAACGCGAAATG
* * * ** *
14144137 GAA-AATCGTAACGCGATTTT
1 CAACTATCGCAACGCGAAATG
*
14144157 CAACTATTGCAACGCGAAATG
1 CAACTATCGCAACGCGAAATG
14144178 CAAC
1 CAAC
14144182 ACGAATTTGC
Statistics
Matches: 60, Mismatches: 24, Indels: 4
0.68 0.27 0.05
Matches are distributed among these distances:
20 28 0.47
21 32 0.53
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (21 bp):
CAACTATCGCAACGCGAAATG
Found at i:14144194 original size:41 final size:41
Alignment explanation
Indices: 14144067--14144177 Score: 195
Period size: 41 Copynumber: 2.7 Consensus size: 41
14144057 CAAATTCATT
14144067 GCGATTTTCAACTATAGCAACGCGAAATGGAAAATCGCAAC
1 GCGATTTTCAACTATAGCAACGCGAAATGGAAAATCGCAAC
* *
14144108 GCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGTAAC
1 GCGATTTTCAACTATAGCAACGCGAAATGGAAAATCGCAAC
*
14144149 GCGATTTTCAACTATTGCAACGCGAAATG
1 GCGATTTTCAACTATAGCAACGCGAAATG
14144178 CAACACGAAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (41 bp):
GCGATTTTCAACTATAGCAACGCGAAATGGAAAATCGCAAC
Found at i:14149208 original size:106 final size:106
Alignment explanation
Indices: 14149022--14149213 Score: 226
Period size: 106 Copynumber: 1.8 Consensus size: 106
14149012 TTTGTCTCTC
* * * * * *
14149022 TTAAGATTGTTTATCTTGAAATACAAACTTTGAGATTGTTTCATTTGAAATGAAAATTTCGTCTC
1 TTAAGATTATTTATCTTGAAACACAAACTTTGAGATGGTTTCACTTAAAATGAAAATTTCATCTC
* *
14149087 CCTTGAACTTGTTTCCCTTGAAACACAAATTCTCGTATCCT
66 ACTTGAACTTATTTCCCTTGAAACACAAATTCTCGTATCCT
* * * * *
14149128 TTAAGGTTATTTATGTTGAAACACAAATTTTGAGATGGTTTCGCTTAAAAT-ACAAATTTTATCT
1 TTAAGATTATTTATCTTGAAACACAAACTTTGAGATGGTTTCACTTAAAATGA-AAATTTCATCT
*
14149192 CACTTGATA-TTATTTCCTTTGA
65 CACTTGA-ACTTATTTCCCTTGA
14149214 CAAACATACT
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
105 1 0.01
106 68 0.97
107 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (106 bp):
TTAAGATTATTTATCTTGAAACACAAACTTTGAGATGGTTTCACTTAAAATGAAAATTTCATCTC
ACTTGAACTTATTTCCCTTGAAACACAAATTCTCGTATCCT
Found at i:14149326 original size:67 final size:65
Alignment explanation
Indices: 14149096--14149326 Score: 171
Period size: 67 Copynumber: 3.4 Consensus size: 65
14149086 CCCTTGAACT
* * * * * *
14149096 TGTTTCCCTTGAAACACAAATTCTCGTATCCTTTAAGGTTATTT-ATGTTGAAACACAAATTTTG
1 TGTTT-CCTTAAAACACAAATTCT-ATCTCCCTTAAGGTTATTTCCT-TTGAAA-ACAAAATTTG
14149160 AG-A
62 AGAA
* * * * ** * *
14149163 TGGTTTCGCTTAAAATACAAATTTTATCTCACTTGATATTATTTCCTTTGACAAACATACTTTGA
1 T-GTTTC-CTTAAAACACAAATTCTATCTCCCTTAAGGTTATTTCCTTTGA-AAACAAAATTTGA
*
14149228 GAT
63 GAA
* * *
14149231 TGTTTCCTATAAAACATAAATTGC-ATCTCCCTTAAGGTTGTTTCCTTTGAAAAGCAAAATTAGA
1 TGTTTCCT-TAAAACACAAATT-CTATCTCCCTTAAGGTTATTTCCTTTGAAAA-CAAAATTTGA
14149295 GAA
63 GAA
*
14149298 TGTTTCTCTTGAAACACAAATTCTATCTC
1 TGTTTC-CTTAAAACACAAATTCTATCTC
14149327 TCTTGAGATG
Statistics
Matches: 126, Mismatches: 28, Indels: 20
0.72 0.16 0.11
Matches are distributed among these distances:
66 6 0.05
67 96 0.76
68 24 0.19
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (65 bp):
TGTTTCCTTAAAACACAAATTCTATCTCCCTTAAGGTTATTTCCTTTGAAAACAAAATTTGAGAA
Found at i:14150324 original size:18 final size:18
Alignment explanation
Indices: 14150301--14150335 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14150291 TACAAGATAA
*
14150301 TAATAACAATAGCAATAC
1 TAATAACAATAACAATAC
*
14150319 TAATAATAATAACAATA
1 TAATAACAATAACAATA
14150336 ATAAGGGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (18 bp):
TAATAACAATAACAATAC
Found at i:14151103 original size:23 final size:22
Alignment explanation
Indices: 14151077--14151140 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
14151067 CAGCTCATAT
14151077 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* *
14151100 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
14151123 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
14151141 TATAATAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:14151281 original size:103 final size:103
Alignment explanation
Indices: 14151156--14151476 Score: 579
Period size: 103 Copynumber: 3.1 Consensus size: 103
14151146 TAATGTCCAT
14151156 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
14151221 GACTTCACACGTGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
* *
14151259 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTATCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
14151324 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
* * *
14151362 AATGACCACATATCATTCATTAAGAATCATATACATATGCCAATGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
14151427 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
14151465 AAGGACCACATA
1 AAGGACCACATA
14151477 GACCCTCTAC
Statistics
Matches: 207, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 207 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:14151993 original size:19 final size:20
Alignment explanation
Indices: 14151956--14151993 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14151946 TTTTTTATTA
*
14151956 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
14151976 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
14151994 TCTAGCGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:14152045 original size:21 final size:21
Alignment explanation
Indices: 14152021--14152063 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14152011 TCATATTCGT
*
14152021 TTGAGGGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
*
14152042 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
14152063 T
1 T
14152064 AGCCCAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:14158112 original size:23 final size:23
Alignment explanation
Indices: 14158086--14158141 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
14158076 CAGCTCATAT
*
14158086 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
* *
14158109 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACCGAAGTGCCACGTAG
14158132 AATTGCACCG
1 AATTGCACCG
14158142 TAGTTCCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACGTAG
Found at i:14158290 original size:103 final size:103
Alignment explanation
Indices: 14158165--14158481 Score: 571
Period size: 103 Copynumber: 3.1 Consensus size: 103
14158155 TAATGTCCAT
14158165 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
14158230 GACTTCACACATGTTTCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
14158268 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
* *
14158333 GACCTCACACATGTTCCAAAGAATACATATATGTCCCT
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
* * *
14158371 AAAGACCACATATCATTCCTTAAGAATTATATACATATGCCAAGGATCAAGTATGTGACTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
14158436 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
14158474 AAGGACCA
1 AAGGACCA
14158482 TATAGACCCT
Statistics
Matches: 203, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 203 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:14159054 original size:21 final size:21
Alignment explanation
Indices: 14159030--14159072 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14159020 TCATATTCGT
*
14159030 TTGAGGGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
*
14159051 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
14159072 T
1 T
14159073 AGCCCAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:14165289 original size:3 final size:3
Alignment explanation
Indices: 14165281--14165312 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14165271 TACTTTACCC
14165281 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
14165313 GTCAAAGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14171686 original size:22 final size:22
Alignment explanation
Indices: 14171658--14171716 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
14171648 ATTCCCCTAG
*
14171658 GGGGAATCGATTCCTATTCAAA
1 GGGGAATCGATTCCCATTCAAA
* *
14171680 GGGGAATC-AGTTCCCCTTCAAG
1 GGGGAATCGA-TTCCCATTCAAA
*
14171702 GGGGTATCGATTCCC
1 GGGGAATCGATTCCC
14171717 TCTGCCCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.94
23 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (22 bp):
GGGGAATCGATTCCCATTCAAA
Found at i:14177540 original size:22 final size:23
Alignment explanation
Indices: 14177514--14177558 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14177504 AAAAAAGACT
*
14177514 GAAAGCATTG-CA-AAAGGCAAAG
1 GAAAGC-TTGTCATAAAGACAAAG
14177536 GAAAGCTTGTCATAAAGACAAAG
1 GAAAGCTTGTCATAAAGACAAAG
14177559 TTATCATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 3 0.15
22 8 0.40
23 9 0.45
ACGTcount: A:0.49, C:0.13, G:0.24, T:0.13
Consensus pattern (23 bp):
GAAAGCTTGTCATAAAGACAAAG
Found at i:14181634 original size:2 final size:2
Alignment explanation
Indices: 14181629--14181672 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
14181619 TACACACATA
14181629 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14181671 AT
1 AT
14181673 TAAAATATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14182126 original size:2 final size:2
Alignment explanation
Indices: 14182119--14182150 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14182109 TTTATTTTAA
14182119 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14182151 TACGTGGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14185649 original size:9 final size:9
Alignment explanation
Indices: 14185635--14185708 Score: 67
Period size: 9 Copynumber: 7.7 Consensus size: 9
14185625 CTGCTGGAAA
14185635 ACCGGTTTG
1 ACCGGTTTG
*
14185644 ACCGGTTTTCA
1 ACCGG-TTT-G
14185655 ACCGGTTTTG
1 ACCGG-TTTG
*
14185665 TCCGGTTTCG
1 ACCGGTTT-G
14185675 ACCGGTTTG
1 ACCGGTTTG
*
14185684 ACCGGTCTG
1 ACCGGTTTG
*
14185693 AACCGGTTTA
1 -ACCGGTTTG
14185703 ACCGGT
1 ACCGGT
14185709 CAGACCCGAC
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
9 23 0.43
10 22 0.41
11 9 0.17
ACGTcount: A:0.14, C:0.26, G:0.28, T:0.32
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:14185671 original size:10 final size:10
Alignment explanation
Indices: 14185635--14185689 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 10
14185625 CTGCTGGAAA
14185635 ACCGGTTT-G
1 ACCGGTTTCG
*
14185644 ACCGGTTTTCA
1 ACCGG-TTTCG
*
14185655 ACCGGTTTTG
1 ACCGGTTTCG
*
14185665 TCCGGTTTCG
1 ACCGGTTTCG
14185675 ACCGGTTT-G
1 ACCGGTTTCG
14185684 ACCGGT
1 ACCGGT
14185690 CTGAACCGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
9 12 0.32
10 21 0.55
11 5 0.13
ACGTcount: A:0.11, C:0.25, G:0.29, T:0.35
Consensus pattern (10 bp):
ACCGGTTTCG
Found at i:14185688 original size:19 final size:19
Alignment explanation
Indices: 14185635--14185708 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 19
14185625 CTGCTGGAAA
*
14185635 ACCGGTTTGACCGGTTTTCA
1 ACCGGTTTGACCGG-TTTCG
*
14185655 ACCGGTTTTGTCCGGTTTCG
1 ACCGG-TTTGACCGGTTTCG
*
14185675 ACCGGTTTGACCGGTCT-G
1 ACCGGTTTGACCGGTTTCG
*
14185693 AACCGGTTTAACCGGT
1 -ACCGGTTTGACCGGT
14185709 CAGACCCGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
18 1 0.02
19 24 0.51
20 14 0.30
21 8 0.17
ACGTcount: A:0.14, C:0.26, G:0.28, T:0.32
Consensus pattern (19 bp):
ACCGGTTTGACCGGTTTCG
Found at i:14185730 original size:14 final size:14
Alignment explanation
Indices: 14185711--14185737 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14185701 TAACCGGTCA
14185711 GACCCGACCCGACT
1 GACCCGACCCGACT
14185725 GACCCGACCCGAC
1 GACCCGACCCGAC
14185738 CGTTGACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.52, G:0.22, T:0.04
Consensus pattern (14 bp):
GACCCGACCCGACT
Found at i:14193063 original size:24 final size:24
Alignment explanation
Indices: 14193022--14193068 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14193012 TGACCGGTCA
*
14193022 AACCCGACTCGACTGACCCGACCC
1 AACCCGACTCGACCGACCCGACCC
*
14193046 AACCCGACT-GACCCGACCTGACC
1 AACCCGACTCGA-CCGACCCGACC
14193069 GTTGACCGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.26, C:0.49, G:0.17, T:0.09
Consensus pattern (24 bp):
AACCCGACTCGACCGACCCGACCC
Found at i:14204841 original size:24 final size:23
Alignment explanation
Indices: 14204811--14204866 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
14204801 TTTTTGTTAA
* *
14204811 TTTAATTTCGCAC-CCTTGAAATT
1 TTTAATTTCACACGCCCT-AAATT
14204834 TTATAATTTCACACGCCCTAAATT
1 TT-TAATTTCACACGCCCTAAATT
14204858 TTTAATTTC
1 TTTAATTTC
14204867 CAATATAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.31
24 17 0.59
25 3 0.10
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (23 bp):
TTTAATTTCACACGCCCTAAATT
Found at i:14213983 original size:182 final size:182
Alignment explanation
Indices: 14213430--14214284 Score: 1089
Period size: 182 Copynumber: 4.7 Consensus size: 182
14213420 TGTCGGTTTA
* * *
14213430 TGTCGATACTTTATAAAAATGTATCGATTCACATCAATATAACAAG-AAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * * * * *
14213494 GTCA-CAAAAAGACAAAACC-G-ATAAAACGTTATCGGATATGTTGAAAGTGACGATACGTTAAT
66 GT-ATCTAAAAGACAAAACCGGTATAGAGCG--ACCGGATATATTGAAAGTGTCGATACTTTAAT
* * *
14213556 ATAAGTATCGACACATTGTGAATTTAAATGAGAAGTAATTTTAGCGCCTATAAAG
128 ATAAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAG
* * * * *
14213611 TGTCGATTCTTTATAAATATGTATCGATCTACAACGATATAACATGTAAAAAAATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * *
14213676 GTCT-TGAAAAAACAAAACCGGGTAAAGCA-CTACCGGATATATTGAAAGTGTCGATACTTTAAT
66 GTATCT-AAAAGACAAAACC-GGTATAG-AGCGACCGGATATATTGAAAGTGTCGATACTTTAAT
* * * ***
14213739 ATAAGTATCGACATTTTGTGAATTTAAAAGAGAATCAGTTTTAGTTTCTATAAAG
128 ATAAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAG
* *
14213794 TGTCGATATTTTATAACAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * *
14213859 ATATCTAAAGGACAAAACCGTTATAGAGCGACCGAATATATTGAAAGTGTCGATACTTTAATATA
66 GTATCTAAAAGACAAAACCGGTATAGAGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
*
14213924 AGTATCTACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAG
131 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAG
* * * *
14213976 TGTCGATACTTTATAAAAATGTATCGATCCATAATGATATAACATGTAAAAATATGACAAAATCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * ** *
14214041 GTATCTAAAGGACAAAATCGGTATAGAGCGACCATATATATTTAAAGTGTCGATACTTTAATATA
66 GTATCTAAAAGACAAAACCGGTATAGAGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
* * *
14214106 AGTATCGACCCTTTGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAAAG
131 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAG
* *
14214158 TGTCGATACTTTATAACAATGTATCGGTCCACAACGATAT-ACAAGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * * *
14214222 GTCT-TGAAATGACAAAACCGGTA-AAACGCTACTGGATATATTGAAAGTGTCGATACTTTAATA
66 GTATCT-AAAAGACAAAACCGGTATAGA-GCGACCGGATATATTGAAAGTGTCGATACTTTAATA
14214285 AGTACGCGTA
Statistics
Matches: 583, Mismatches: 80, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
180 3 0.01
181 111 0.19
182 318 0.55
183 145 0.25
184 2 0.00
185 3 0.01
186 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (182 bp):
TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
GTATCTAAAAGACAAAACCGGTATAGAGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAG
Found at i:14214196 original size:364 final size:364
Alignment explanation
Indices: 14213430--14214284 Score: 1152
Period size: 365 Copynumber: 2.3 Consensus size: 364
14213420 TGTCGGTTTA
* * * *
14213430 TGTCGATACTTTATAAAAATGTATCGATTCACATCAATATAACAAG-AAAAATATGACAAAACCG
1 TGTCGATACTTTATAACAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * * * *
14213494 GTCA-CAAAAAGACAAAACCG-ATAAAACGTTATCGGATATGTTGAAAGTGACGATACGTTAATA
66 GT-ATCTAAAAGACAAAACCGTATAAAGCG--ACCGGATATATTGAAAGTGTCGATACTTTAATA
* * *
14213557 TAAGTATCGACACATTGTGAATTTAAATGAGAAGTAATTTTAGCGCCTATAAAGTGTCGATTCTT
128 TAAGTATCGACACATTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAGTGTCGATACTT
* * *
14213622 TATAAATATGTATCGATCTACAACGATATAACATGTAAAAAAATGACAAAACCGGTCTTGAAAAA
193 TATAAAAATGTATCGATCCACAACGATATAACATGTAAAAAAATGACAAAACCGGTATTGAAAAA
* *
14213687 ACAAAACCGGGTAAAGCACTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACA
258 ACAAAACCGGGTAAAGCACGACCAGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACA
* * ***
14213752 TTTTGTGAATTTAAAAGAGAATCAGTTTTAGTTTCTATAAAG
323 CTTTGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAAAG
*
14213794 TGTCGATATTTTATAACAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAACAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * *
14213859 ATATCTAAAGGACAAAACCGTTATAGAGCGACCGAATATATTGAAAGTGTCGATACTTTAATATA
66 GTATCTAAAAGACAAAACCG-TATAAAGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
* *
14213924 AGTATCTACACTTTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAGTGTCGATACTTTA
130 AGTATCGACACATTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAGTGTCGATACTTTA
* * * * **
14213989 TAAAAATGTATCGATCCATAATGATATAACATGTAAAAATATGACAAAATCGGTATCT-AAAGGA
195 TAAAAATGTATCGATCCACAACGATATAACATGTAAAAAAATGACAAAACCGGTAT-TGAAAAAA
* * * * *
14214053 CAAAATC-GGTATAG-AGCGACCATATATATTTAAAGTGTCGATACTTTAATATAAGTATCGACC
259 CAAAACCGGGTAAAGCA-CGACCAGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACA
14214116 CTTTGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAAAG
323 CTTTGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAAAG
*
14214158 TGTCGATACTTTATAACAATGTATCGGTCCACAACGATAT-ACAAGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAACAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
* * * *
14214222 GTCT-TGAAATGACAAAACCGGTA-AAACGCTACTGGATATATTGAAAGTGTCGATACTTTAATA
66 GTATCT-AAAAGACAAAACC-GTATAAA-GCGACCGGATATATTGAAAGTGTCGATACTTTAATA
14214285 AGTACGCGTA
Statistics
Matches: 432, Mismatches: 50, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
362 3 0.01
363 74 0.17
364 166 0.38
365 182 0.42
366 1 0.00
367 6 0.01
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (364 bp):
TGTCGATACTTTATAACAATGTATCGATCCACAACGATATAACAAGTAAAAATATGACAAAACCG
GTATCTAAAAGACAAAACCGTATAAAGCGACCGGATATATTGAAAGTGTCGATACTTTAATATAA
GTATCGACACATTGTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAGTGTCGATACTTTAT
AAAAATGTATCGATCCACAACGATATAACATGTAAAAAAATGACAAAACCGGTATTGAAAAAACA
AAACCGGGTAAAGCACGACCAGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
TGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAAAG
Found at i:14214913 original size:39 final size:39
Alignment explanation
Indices: 14214870--14214971 Score: 204
Period size: 39 Copynumber: 2.6 Consensus size: 39
14214860 TGAGACCGAT
14214870 TATATAATATTATAGGTAGAAAATAAATATGGATACCTG
1 TATATAATATTATAGGTAGAAAATAAATATGGATACCTG
14214909 TATATAATATTATAGGTAGAAAATAAATATGGATACCTG
1 TATATAATATTATAGGTAGAAAATAAATATGGATACCTG
14214948 TATATAATATTATAGGTAGAAAAT
1 TATATAATATTATAGGTAGAAAAT
14214972 GATATTTTAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.47, C:0.04, G:0.15, T:0.34
Consensus pattern (39 bp):
TATATAATATTATAGGTAGAAAATAAATATGGATACCTG
Found at i:14216335 original size:22 final size:24
Alignment explanation
Indices: 14216288--14216338 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
14216278 TTTTGTTTTT
*
14216288 TTATATAAAATGATAATATATTTA
1 TTATATAAAATGATAATATATGTA
*
14216312 TTATATAAAATTATAA-AT-TGTA
1 TTATATAAAATGATAATATATGTA
14216334 TTATA
1 TTATA
14216339 AATACAGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 8 0.32
23 2 0.08
24 15 0.60
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (24 bp):
TTATATAAAATGATAATATATGTA
Found at i:14216749 original size:21 final size:21
Alignment explanation
Indices: 14216725--14216768 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
14216715 AAGACAATCA
14216725 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
*
14216746 AGAGTCGAAGAGACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
14216767 AG
1 AG
14216769 GCATAAGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.34, T:0.14
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:14216839 original size:33 final size:33
Alignment explanation
Indices: 14216802--14216868 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
14216792 AAATAGATGG
14216802 AGTGGTGAAAGAAGTTGAGGTGTTGAAGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTGAAGGGTGA
*
14216835 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTGAAGGGTGA
14216868 A
1 A
14216869 CTTAAAATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.00, G:0.46, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTTGAGGTGTTGAAGGGTGA
Found at i:14217084 original size:18 final size:18
Alignment explanation
Indices: 14217061--14217117 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
14217051 GAAAAAATAA
14217061 GAAGAAGAAAAGAGGGAG
1 GAAGAAGAAAAGAGGGAG
*
14217079 GAAGAAGAAAAGAGGGAT
1 GAAGAAGAAAAGAGGGAG
* *
14217097 GAAGAAGAAAATATGGAG
1 GAAGAAGAAAAGAGGGAG
14217115 GAA
1 GAA
14217118 ATGAGGAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.56, C:0.00, G:0.39, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGAGGGAG
Found at i:14218693 original size:19 final size:19
Alignment explanation
Indices: 14218669--14218717 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
14218659 AATGTAGAGT
14218669 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
14218688 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
14218707 TAATTTTGTAT
1 TAATTTTGTAT
14218718 GTGGATGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:14219589 original size:202 final size:201
Alignment explanation
Indices: 14219068--14220227 Score: 1384
Period size: 200 Copynumber: 5.8 Consensus size: 201
14219058 GTAAGCATAT
* *
14219068 GTGTCGATACAATTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* ** * * ** * * *
14219133 GGTAATTTTGTAATATAATCTATATAAATATACCGATTTTTTTTGTGAGAATAGGTCTACATAAT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCG--GTTTTATGAGAGAATAGGTCTACATAAT
* * * * * * *
14219198 GTATCGACACTT-TTTCATTATGTGTCGGTACTTTTTGTCCATAATGAATGCCCAAAATGA-TGA
129 GTATCGACACTTGTGTAATT-TGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGAGAGA
14219261 ACGCATAAA
193 ACGCATAAA
* ** * * * *
14219270 GCGTCGATACATTTATTGAAAGTGTCGATCTCATAAACATCGAAACCCATAAATATAATATAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * * *
14219335 GGTAAATTTACAATGTAATCGATATAACTAAACCGATTTTATGA-ATGAATAGGCCTACATAATG
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGA-GAATAGGTCTACATAATG
* * *
14219399 TATCGACACTTATGTAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCCAAAAAGAGAGCAC
130 TATCGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGAGAGAAC
14219464 GCA-ACAA
195 GCATA-AA
* * * *
14219471 GTGTCAATACATTTATAAACAAGTATCGATCCCAGAAACATCAAAACCCATAATTATAATGTAAT
1 GTGTCGATACATTTATAAA-AAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAAT
* * ** *
14219536 AGGTAATTTTTCAATGTAACCGGTATATGTATACCAGTTTTATGAGAGAATAGGTCTACA-ATAT
65 AGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATA-AT
* * * * *
14219600 GTATCGACACTTGTGTAATTTGTGTCGATACTTTTGGTCCATAAGGAATGCCCAAAAAGGGTGCA
129 GTATCGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGAGAGAA
*
14219665 C-CATTAA
194 CGCATAAA
* *
14219672 GTGTCGATACATTTATAAAAAGTGTCTATCCCAAAAACATCTAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * *
14219737 GGTAATTTTATAATATAACCGGTATAAATATACCGGTTTTAT-ATGAGAATATGTCTACATAATG
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGA-GAGAATAGGTCTACATAATG
** *
14219801 TATCGACA-TT-T-TTTTTTGTGTCGATACTTTTTGTCCAGAATGAATGCCC-AAAAG-GATGAA
130 TATCGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGAGA-GAA
14219861 CGCATAAA
194 CGCATAAA
* * * * *
14219869 GTATCGATATATTTATAAAAAGTGTCGATACCAGAAACATCGAAACCCATAAATATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
14219934 GGTAAATTTAAAATGTAACCGGTATAACTATGCCGGTTTTATGAGAGAATAGGTCTACA-ACATG
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATA-ATG
* *
14219998 TATCGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATG-CC-AAAAGGGTTGAA
130 TATCGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGAG-AGAA
14220061 CGCATAAA
194 CGCATAAA
* * *
14220069 GTGTCGATACATTTTTAAAAAGTGTCGATCCCAAAAATATCGAAACCGATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
** *
14220134 TTTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGA-AAGTAGGTC-ATCATAAA
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAA-TAGGTCTA-CATAAT
*
14220197 GTATCGACAATTGT-TAAATTTGTGTCGATAC
129 GTATCGACACTTGTGT-AATTTGTGTCGATAC
14220228 CATTTTAAAT
Statistics
Matches: 827, Mismatches: 108, Indels: 48
0.84 0.11 0.05
Matches are distributed among these distances:
195 1 0.00
196 9 0.01
197 158 0.19
198 4 0.00
199 16 0.02
200 352 0.43
201 53 0.06
202 233 0.28
203 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (201 bp):
GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
ATCGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGAGAGAACG
CATAAA
Found at i:14220017 original size:397 final size:402
Alignment explanation
Indices: 14219071--14220175 Score: 1435
Period size: 397 Copynumber: 2.8 Consensus size: 402
14219061 AGCATATGTG
* *
14219071 TCGATACAATTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGT
1 TCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGT
** * * ** * * *
14219136 AATTTTGTAATATAATCTATATAAATATACCGATTTTTTTTGTGAGAATAGGTCTACATAATGTA
66 AATTTTAAAATGTAACCGGTATAAATATACCG--GTTTTATGAGAGAATAGGTCTACA-AATGTA
* * * * * *
14219201 TCGACACTT-TTTCATTATGTGTCGGTACTTTTTGTCCATAATGAATGCCCAAAATGATGAACGC
128 TCGACACTTGTGTAATT-TGTGTCGATACTTTTTGTCCATAAGGAATGCCCAAAAGGGTGAACGC
* ** * * * *
14219265 ATAAAGCGTCGATACATTTATTGAAAGTGTCGATCTCATAAACATCGAAACCCATAAATATAATA
192 ATAAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATG
* * * * *
14219330 TAATAGGTAAATTTACAATGTAATCGATATAACTAAACC-GATTT-TATGAATGAATAGGCCTAC
257 TAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATATGAATGAATAGGCCTAC
14219393 ATAATGTATCGACACTTATGTAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCCAAAAAGA
322 ATAATGTATCGACACTTATGTAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCCAAAAAGA
* *
14219458 GAGCACGCAACAAGTG
387 GAGAACGCAACAAGTA
* *
14219474 TCAATACATTTATAAACAAGTATCGATCCCAGAAACATCAAAACCCATAATTATAATGTAATAGG
1 TCGATACATTTATAAA-AAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGG
** ** *
14219539 TAATTTTTCAATGTAACCGGTATATGTATACCAGTTTTATGAGAGAATAGGTCTACAATATGTAT
65 TAATTTTAAAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAA-ATGTAT
* *
14219604 CGACACTTGTGTAATTTGTGTCGATACTTTTGGTCCATAAGGAATGCCCAAAAAGGGTGCAC-CA
129 CGACACTTGTGTAATTTGTGTCGATACTTTTTGTCCATAAGGAATGCCC-AAAAGGGTGAACGCA
* * *
14219668 TTAAGTGTCGATACATTTATAAAAAGTGTCTATCCCAAAAACATCTAAACCCATAATTATAATGT
193 TAAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
* * * * *
14219733 AATAGGTAATTTTATAATATAACCGGTATAAATATACCGGTTTTATATG-A-GAATATGTCTACA
258 AATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATATGAATGAATAGGCCTACA
** * *
14219796 TAATGTATCGACA-TT-T-TTTTTTGTGTCGATACTTTTTGTCCAGAATGAATGCCC-AAAAG-G
323 TAATGTATCGACACTTATGTAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCCAAAAAGAG
14219856 ATGAACGCATA-AAGTA
388 A-GAACGCA-ACAAGTA
* * * *
14219872 TCGATATATTTATAAAAAGTGTCGATACCAGAAACATCGAAACCCATAAATATAATGTAATAGGT
1 TCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGT
* * *
14219937 AAATTTAAAATGTAACCGGTATAACTATGCCGGTTTTATGAGAGAATAGGTCTACAACATGTATC
66 AATTTTAAAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAA-ATGTATC
*
14220002 GACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATG-CCAAAAGGGTTGAACGCAT
130 GACACTTGTGTAATTTGTGTCGATACTTTTTGTCCATAAGGAATGCCCAAAAGGG-TGAACGCAT
* * *
14220066 AAAGTGTCGATACATTTTTAAAAAGTGTCGATCCCAAAAATATCGAAACCGATAATTATAATGTA
194 AAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTA
**
14220131 ATATTTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTAT
259 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTAT
14220176 GAGAAAGTAG
Statistics
Matches: 614, Mismatches: 78, Indels: 26
0.86 0.11 0.04
Matches are distributed among these distances:
395 7 0.01
396 6 0.01
397 249 0.41
398 29 0.05
399 35 0.06
400 1 0.00
401 3 0.00
402 177 0.29
403 33 0.05
404 74 0.12
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (402 bp):
TCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGT
AATTTTAAAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAAATGTATCG
ACACTTGTGTAATTTGTGTCGATACTTTTTGTCCATAAGGAATGCCCAAAAGGGTGAACGCATAA
AGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAAT
AGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATATGAATGAATAGGCCTACATAA
TGTATCGACACTTATGTAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCCAAAAAGAGAGA
ACGCAACAAGTA
Found at i:14221560 original size:6 final size:6
Alignment explanation
Indices: 14221526--14221559 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
14221516 CAAGAGGTCA
* *
14221526 ATGAAG ATGAAG ATGACG ATGAAG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
14221560 TTATGATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:14223872 original size:401 final size:396
Alignment explanation
Indices: 14223071--14224222 Score: 1476
Period size: 401 Copynumber: 2.9 Consensus size: 396
14223061 TAAAGTTTCC
* *
14223071 CATAAAGTATCGATACAGTTT-TAAAAAGTATCGATCCCAGAAACATCGAAATCCATAAATATAA
1 CATAAAGTGTCGATACA-TTTATAAAAAGTATCGATCCCA-AAACATCGAAA-CCATAATTATAA
* * * * * *
14223135 TGTAATAGGTAAATTTACAATGTAAGAAGTGTAACTAAACCAGTTTTATGAGAGAATAGGTCTAC
63 TGTAATAGGTAAATTTACAATGTAACAGGTATAAATAAACCAGTTTTATGAGAAAATAGGTATAC
*
14223200 ATAATGTATCGACACTTCTGGAATTTGTGTCGATACTGTTTGTCCAGAAGG--AATGCTCAAAAA
128 ATAATGTATCGACACTTCTGGAATTTGTGTCGATACT-TTTGTCCAAAAGGAAAAT-C-CAAAAA
* *
14223263 GGGTGCACCCATAAAGTGTCGATAC-TTTTTAAAAAAGTATCGATCCCAAAAATATTGAAACCCA
190 GGGTGCACCCATAAAGTGTCGATACATTTTT-AAAAAGTATCGATCCCAAAAACATAGAAACCCA
* *
14223327 TAATTATAATGTAATATGTAATTTTGTAATATAATCAGTATAAATATACCGATTTTATGTGAGAA
254 TAATTATAATGTAATA-GTAATTTTGT-ATATAACCGGTATAAATATACCGATTTTATGTGAGAA
* * * *
14223392 TAGGTCTATATAATGTGTCGACACTTTTTAATGTTGTGTCGATACGTTTTGTCCAGAATGAATGC
317 TAGGTCTACATAATGTGTCGACACTTTTGAATGATGTGTCGATACGTTTTATCCAGAATGAATGC
*
14223457 CCAAAAGGGTGAACG
382 CCAAAAGAGTGAACG
14223472 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCTAAAACATCGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCC-AAAACATCGAAACC-ATAATTATAAT
* * * * *
14223537 GTAATAGGTAAATTTAAAATGTAACTGGTATAAATAAACCGGTTTTTTGAGAAAATAGATATACA
64 GTAATAGGTAAATTTACAATGTAACAGGTATAAATAAACCAGTTTTATGAGAAAATAGGTATACA
* * *
14223602 TAATGTATCGACACTTGTGGAATTTGTGTCGATACTTTTGGTCCACAAGGAAAATCCAAAAATGG
129 TAATGTATCGACACTTCTGGAATTTGTGTCGATACTTTT-GTCCAAAAGGAAAATCCAAAAAGGG
* * * * * *
14223667 TGCACCCATAAAGTGTCGATACATGTTTAAATAGTATCGATCCCTAAAACATCGAAACCTATAAA
193 TGCACCCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATAGAAACCCATAAT
** *
14223732 TATAATGTAATAGATAATTTTGTATATAACCGGTATAAATATACCGGCTTTATGTCAGAATAGGT
258 TATAATGTAATAG-TAATTTTGTATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGT
14223797 CTACATAATGTGTCGACACTTTTGAATGATGTGTCGATACGTTTTATCCAGAATGAATGCCCAAA
322 CTACATAATGTGTCGACACTTTTGAATGATGTGTCGATACGTTTTATCCAGAATGAATGCCC-AA
14223862 AAGAGTGAACG
386 AAGAGTGAACG
* *
14223873 AATAAAGTGTCGATACATTTATAAAAAGTATCGATTCCAAAAACATCGAAACCAATAATTATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGA-TCCCAAAACATCGAAACC-ATAATTATAAT
* * **
14223938 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATGTTAAAATAGGTGA-AC
64 GTAATAGGTAAATTTACAATGTAACAGGTATAAATAAACCAGTTTTATGAGAAAATAGGT-ATAC
* * ** **
14224002 ATAATGTATCGACACGTTTTAG-ATTTGTGTCGATACTTTTTGTCCAAAATTAATGT-C-AAAAG
128 ATAATGTATCGACAC-TTCTGGAATTTGTGTCGATAC-TTTTGTCCAAAAGGAAAATCCAAAAAG
** *
14224064 GGTTGCAAGCATATAA-TGTCGATACATTTTTTAAAAAGTATCGATCCCAAAAACATAGAAACCG
191 GG-TGCACCCATA-AAGTGTCGATACA-TTTTTAAAAAGTATCGATCCCAAAAACATAGAAACCC
*** * * * *
14224128 ATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATGTACCGATTTTATGAGAAA
253 ATAATTATAATGTAATA-GT-AATTTTGTATATAACCGGTATAAATATACCGATTTTATGTGAGA
** *
14224193 ATAGGTGAACATAATGTATCGACACGTTTT
316 ATAGGTCTACATAATGTGTCGACAC-TTTT
14224223 AGATTTATGG
Statistics
Matches: 659, Mismatches: 73, Indels: 36
0.86 0.10 0.05
Matches are distributed among these distances:
399 6 0.01
400 123 0.19
401 448 0.68
402 75 0.11
403 7 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (396 bp):
CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAACATCGAAACCATAATTATAATGT
AATAGGTAAATTTACAATGTAACAGGTATAAATAAACCAGTTTTATGAGAAAATAGGTATACATA
ATGTATCGACACTTCTGGAATTTGTGTCGATACTTTTGTCCAAAAGGAAAATCCAAAAAGGGTGC
ACCCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATAGAAACCCATAATTAT
AATGTAATAGTAATTTTGTATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTAC
ATAATGTGTCGACACTTTTGAATGATGTGTCGATACGTTTTATCCAGAATGAATGCCCAAAAGAG
TGAACG
Found at i:14224218 original size:201 final size:201
Alignment explanation
Indices: 14223071--14224240 Score: 1278
Period size: 201 Copynumber: 5.8 Consensus size: 201
14223061 TAAAGTTTCC
* * * *
14223071 CATAAAGTATCGATACAGTTTTAAAAAGTATCGATCCCAGAAACATCGAAATCC-ATAAATATAA
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAA-CCGATAATTATAA
*** * * * * *
14223135 TGTAATAGGTAAATTTACAATGTAAGAAGTGTAACTAAACC-AGTTTTATGAGAGAATAGGTCTA
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGA-TTTTATGAGAAAATAGGTCAA
* * * *
14223199 CATAATGTATCGACACTTCTGGAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCTCAAAAAG
129 CATAATGTATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCTCAAAAAG
**
14223264 GGTGCACC
194 GGTGCAAG
* * *
14223272 CATAAAGTGTCGATAC-TTTTTAAAAAAGTATCGATCCCAAAAATATTGAAACCCATAATTATAA
1 CATAAAGTGTCGATACATTTTT-AAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAA
* * ** * * * * * * *
14223336 TGTAATATGTAATTTTGTAATATAATCAGTATAAATATACCGATTTTATGTGAGAATAGGTCTAT
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCAAC
* * * *
14223401 ATAATGTGTCGACACTTTT-TAATGTTGTGTCGATACGTTTTGTCCAGAATGAATGC-CCAAAAG
130 ATAATGTATCGACACTTTTAGAAT-TTGTGTCGATACTTTTTGTCCAGAATGAATGCTCAAAAAG
14223464 GGTG-AACG
194 GGTGCAA-G
* *
14223472 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCTAAAACATCGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* * * * * *
14223537 GTAATAGGTAAATTTAAAATGTAACTGGTATAAATAAACCGGTTTTTTGAGAAAATAGAT-ATAC
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCA-AC
* * * * *
14223601 ATAATGTATCGACACTTGTGGAATTTGTGTCGATACTTTTGGTCCACAAGGAAAAT-C-CAAAAA
130 ATAATGTATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAATG--AATGCTCAAAAA
* **
14223664 TGGTGCACC
193 GGGTGCAAG
* * * * *
14223673 CATAAAGTGTCGATACATGTTTAAATAGTATCGATCCCTAAAACATCGAAACCTATAAATATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* *** * ** ** * *
14223738 GTAATAGAT-AATTTTGTATATAACCGGTATAAATATACCGGCTTTATGTCAGAATAGGTCTACA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCAACA
* * * * * *
14223802 TAATGTGTCGACACTTTT-GAATGATGTGTCGATACGTTTTATCCAGAATGAATGCCCAAAAAGA
131 TAATGTATCGACACTTTTAGAAT-TTGTGTCGATACTTTTTGTCCAGAATGAATGCTCAAAAAGG
14223866 GTG-AACG
195 GTGCAA-G
* * * *
14223873 AATAAAGTGTCGATACATTTATAAAAAGTATCGATTCCAAAAACATCGAAACCAATAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
** *
14223938 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACC-AGTTTTATGTTAAAATAGGTGAAC
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGA-TTTTATGAGAAAATAGGTCAAC
* *
14224002 ATAATGTATCGACACGTTTTAG-ATTTGTGTCGATACTTTTTGTCCAAAATTAATG-TC-AAAAG
130 ATAATGTATCGACAC-TTTTAGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCTCAAAAAG
14224064 GGTTGCAAG
194 GG-TGCAAG
*
14224073 CATATAA-TGTCGATACATTTTTTAAAAAGTATCGATCCCAAAAACATAGAAACCGATAATTATA
1 CATA-AAGTGTCGATACA-TTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATA
* *
14224137 ATGTAATAGGTAAATTTACAATGTAACCGGTATAAATGTACCGATTTTATGAGAAAATAGGTGAA
64 ATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCAA
* *
14224202 CATAATGTATCGACACGTTTTAG-ATTTATGGCGATACTT
129 CATAATGTATCGACAC-TTTTAGAATTTGTGTCGATACTT
14224241 GTAAATAACA
Statistics
Matches: 817, Mismatches: 127, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
198 3 0.00
199 13 0.02
200 330 0.40
201 458 0.56
202 12 0.01
203 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (201 bp):
CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCAACA
TAATGTATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCTCAAAAAGGG
TGCAAG
Found at i:14228643 original size:199 final size:198
Alignment explanation
Indices: 14228216--14228914 Score: 765
Period size: 199 Copynumber: 3.5 Consensus size: 198
14228206 ACCTAAATAT
* * *
14228216 GTGTCGATAC-TTTTTCTAAAAGTATCGACCCAAAAAACATCAAAACCAATAATTATAATGTAAT
1 GTGTCGATACATTTAT-TAAAAGTATCGACCC-AAAAACATCGAAACCGATAATTATAATGTAAT
* * * * * * * * *
14228280 AGGTAAATTAACAATATAACCGGTATAAATATACCGG-TTAATTAGAAAACATGTCAACATATTG
64 AGGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAAAATAGGTCATCATAATG
14228344 TATCGACACTTGTGT-AATTTGTGTCGATACTTATTGTCCAGAATGAATGCCCAAACGAGGTGCA
129 TATCGACACTT-T-TAAATTTGTGTCGATACTTATTGTCCAGAATGAATG-CCAAACGAGGTGCA
14228408 CACATAAA
191 CACATAAA
* * * *
14228416 GTGTCGATACAATTATTAAAAGTATCGATTCCAATAAA-ATCGAAATCGATACTTATAATGTAAT
1 GTGTCGATACATTTATTAAAAGTATCGA-CCCAA-AAACATCGAAACCGATAATTATAATGTAAT
* * * * *
14228480 ATGTGAAGTTACAATGTAACCGGTAAAAATATATCGGTTTTATGAGAAAATAGGTCATCATAAAG
64 AGGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAAAATAGGTCATCATAATG
** *
14228545 TAT-GAACACTTATTAAATTTGCATCGATACATT-TTGTCCATAATGAATGCCAAACG-GGTGCA
129 TATCG-ACACTT-TTAAATTTGTGTCGATAC-TTATTGTCCAGAATGAATGCCAAACGAGGTGCA
14228607 CACATAAA
191 CACATAAA
* * * *
14228615 GTGTCAATACATTTATTAAAAGTATCGATCCCAAAAATATCGAAACCGATAATTACAATGTGATA
1 GTGTCGATACATTTATTAAAAGTATCGA-CCCAAAAACATCGAAACCGATAATTATAATGTAATA
* * * * * *
14228680 GGTAAATTTACAATGTATCCGATAGAAATATA-CTGATTTTATGAAAAAATAGGTC-TAAATAAT
65 GGTAAATTTACAATGTAACCGGTATAAATATATC-GGTTTTATGAGAAAATAGGTCAT-CATAAT
* * * *
14228743 GTATCGACACTCTTTAAGTTTGTGTCGATACTTGTT-TTCAGAATGAATGCCCAACGAGGTGCAC
128 GTATCGACACT-TTTAAATTTGTGTCGATACTTATTGTCCAGAATGAATGCCAAACGAGGTGCAC
*
14228807 GCATAAA
192 ACATAAA
** * * *
14228814 GTGTCGATACATTTA--AATTGTATCGATCCAAAAACATTGAAACTGATAATTATAATGTAATAG
1 GTGTCGATACATTTATTAAAAGTATCGACCCAAAAACATCGAAACCGATAATTATAATGTAATAG
* * *
14228877 GTAAATTTGCAATGTTACCGGTATAAATATATCAGTTT
66 GTAAATTTACAATGTAACCGGTATAAATATATCGGTTT
14228915 ACTTATAAAA
Statistics
Matches: 419, Mismatches: 65, Indels: 34
0.81 0.13 0.07
Matches are distributed among these distances:
196 60 0.14
197 10 0.02
198 24 0.06
199 170 0.41
200 87 0.21
201 66 0.16
202 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (198 bp):
GTGTCGATACATTTATTAAAAGTATCGACCCAAAAACATCGAAACCGATAATTATAATGTAATAG
GTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAAAATAGGTCATCATAATGTA
TCGACACTTTTAAATTTGTGTCGATACTTATTGTCCAGAATGAATGCCAAACGAGGTGCACACAT
AAA
Found at i:14229043 original size:23 final size:23
Alignment explanation
Indices: 14228993--14229037 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14228983 TGCCTATTTT
* * *
14228993 ATTATATAATCGTTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
14229016 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
14229038 TGTTATTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:14229078 original size:87 final size:87
Alignment explanation
Indices: 14228932--14229245 Score: 565
Period size: 87 Copynumber: 3.6 Consensus size: 87
14228922 AAATAGGCCA
*
14228932 ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCAGTTAAATGCCTATTTTATTA
1 ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGCCTATTTTATTA
*
14228997 TATAATCGTTACCTATTACATT
66 TATAATCGCTACCTATTACATT
*
14229019 ATATAAGCGCTACCTAATATGTTATTGAACTTGATAATATTTCCGGTTAAATGCCTATTTTATTA
1 ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGCCTATTTTATTA
14229084 TATAATCGCTACCTATTACATT
66 TATAATCGCTACCTATTACATT
* * *
14229106 ATATAAGTGCTACCTAATATGTTATTGTACTTGATAATATTTCTGGTTAAATGTCTATTTTATTA
1 ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGCCTATTTTATTA
14229171 TATAATCGCTACCTATTACATT
66 TATAATCGCTACCTATTACATT
*
14229193 ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCTGGTTAAATG
1 ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATG
14229246 ATATAACATA
Statistics
Matches: 219, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 219 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (87 bp):
ATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGCCTATTTTATTA
TATAATCGCTACCTATTACATT
Done.