genome.fa.s1900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001900.1 Hibiscus syriacus cultivar Beakdansim tig00003850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74322

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3739--4075	162	2.1	162	88	1	505	28	15	13	42	1.84
3910--4317	182	2.2	183	88	2	615	27	15	13	43	1.85
7267--7293	13	2.1	13	100	0	54	37	14	7	40	1.74
9834--10168	44	7.6	44	71	2	206	30	17	20	32	1.95
9834--10254	132	3.2	132	84	2	551	31	17	19	31	1.95
10269--10810	139	3.9	139	85	3	723	25	19	17	36	1.94
11329--11379	20	2.6	19	84	9	66	29	21	29	19	1.98
11494--12089	53	10.8	53	74	11	432	40	17	10	31	1.83
11494--12089	106	5.4	107	76	10	540	40	17	10	31	1.83
11843--11875	12	2.8	12	100	0	66	42	6	9	42	1.61
11751--11984	122	1.9	120	86	8	332	43	15	8	32	1.78
11526--12137	337	1.8	325	83	7	802	40	17	10	31	1.83
12088--12264	58	3.1	56	83	4	203	40	13	11	35	1.81
12088--12282	56	3.5	56	81	6	180	39	13	12	34	1.83
14241--14295	23	2.4	21	80	19	58	3	20	0	76	0.94
17929--18030	35	2.9	35	79	7	116	35	3	34	26	1.75
17940--18040	35	2.9	35	85	2	132	33	2	36	26	1.72
27015--27578	68	8.0	68	77	8	248	27	16	12	43	1.84
27121--27504	35	10.8	33	68	14	151	25	16	12	44	1.84
27228--27285	20	3.2	20	67	23	54	24	12	13	50	1.76
27187--27304	39	3.1	39	74	14	111	27	13	11	47	1.78
27084--27713	73	8.8	73	78	10	545	28	16	12	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27331--27455	38	3.4	38	70	16	111	33	21	8	36	1.85
27165--27713	72	7.7	71	78	11	487	29	16	12	42	1.84
27228--27467	38	6.7	36	64	12	107	29	17	12	41	1.85
27165--27619	143	3.2	143	79	12	488	29	16	12	41	1.85
29496--29565	16	4.4	16	92	0	122	50	5	25	18	1.69
35894--36055	65	2.5	65	90	1	254	29	16	22	32	1.95
35896--36095	65	3.1	63	75	18	180	28	17	23	31	1.96
42916--44704	916	2.0	916	98	0	3443	25	19	17	38	1.93
45460--45604	64	2.2	64	85	6	195	29	16	22	31	1.96
45481--45618	64	2.2	63	84	5	170	31	15	20	32	1.94
58079--58329	137	1.8	137	80	3	299	29	12	17	39	1.87
58287--58538	54	4.7	54	90	2	348	35	18	17	28	1.94
62038--62216	90	2.0	90	93	0	304	45	2	25	26	1.67
64573--64649	37	2.1	37	83	9	95	25	3	2	67	1.21
66282--66330	2	24.5	2	91	0	71	48	0	44	6	1.27
66282--66330	14	3.5	14	94	0	80	48	0	44	6	1.27
66650--66695	19	2.4	19	92	0	74	19	23	13	43	1.86
66683--66716	17	2.1	17	88	5	52	0	26	11	61	1.30
67202--67267	3	21.7	3	90	3	105	63	0	1	34	1.04
67477--68182	139	5.1	138	81	4	666	25	17	26	30	1.97
67477--68169	278	2.5	278	80	2	741	25	17	26	30	1.97
68104--68238	56	2.4	56	83	2	164	29	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67965--68356	195	2.0	195	84	0	514	28	18	23	29	1.98
67826--68516	334	2.1	334	81	3	793	27	17	25	29	1.98
67688--68655	473	2.0	473	82	3	1151	27	17	25	29	1.98
68161--68699	139	3.9	139	82	3	627	27	17	26	28	1.98
68997--69098	51	2.0	51	94	0	177	37	14	16	31	1.89
69052--69259	67	3.1	67	86	2	276	39	12	17	30	1.87
69221--69645	99	4.3	94	77	9	334	37	8	17	35	1.81
69267--69645	99	3.9	99	82	4	398	37	9	17	35	1.83

Tables:   1

The End!