genome.fa.s1901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001901.1 Hibiscus syriacus cultivar Beakdansim tig00003852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41925

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152--1290	21	6.8	20	72	8	82	36	25	17	20	1.94
1257--1482	20	11.5	20	81	5	210	36	25	18	19	1.94
2145--2188	22	2.0	22	87	12	65	25	15	22	36	1.94
2362--2386	12	2.1	12	100	0	50	72	0	28	0	0.86
4655--4941	19	16.4	19	77	18	320	47	17	21	13	1.83
4655--4941	33	8.2	34	79	15	238	47	17	21	13	1.83
4683--4922	103	2.3	104	97	1	446	47	16	22	14	1.82
4683--4922	52	4.6	52	97	1	446	47	16	22	14	1.82
4683--4963	71	4.0	71	78	13	300	46	16	22	14	1.83
4950--5085	52	2.6	52	88	5	159	18	22	17	41	1.90
4988--5103	19	6.4	19	86	11	172	14	22	17	45	1.84
5209--5244	14	2.6	14	86	4	56	44	22	0	33	1.53
6633--6697	22	3.0	22	70	4	69	20	18	38	23	1.93
6633--6700	21	3.2	21	70	2	64	19	19	36	25	1.94
7207--7263	14	3.7	14	77	20	60	45	22	21	10	1.82
7188--7280	33	2.8	33	95	0	168	47	21	20	10	1.80
7151--7285	19	7.6	19	76	16	128	45	23	19	11	1.82
7281--7390	18	6.4	18	71	25	96	7	17	29	46	1.74
7281--7371	32	2.8	34	90	6	143	7	17	28	46	1.76
7455--7829	93	4.1	93	98	0	718	46	18	12	22	1.83
9528--9616	14	5.7	14	73	21	79	42	23	24	8	1.83
9520--9633	33	3.5	33	95	2	212	45	21	23	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9650--9706	14	3.7	14	75	20	60	10	24	22	42	1.85
9647--9711	33	2.0	33	100	0	130	10	24	21	43	1.84
9690--9767	41	1.9	41	97	0	147	12	25	16	44	1.83
9691--9766	21	3.7	21	83	3	109	11	25	17	46	1.82
9846--9916	33	2.2	33	92	0	115	47	18	22	11	1.80
10096--10150	22	2.5	22	81	0	74	20	16	40	23	1.91
10297--10490	20	9.6	20	79	5	194	20	19	24	35	1.95
10299--10490	60	3.2	60	80	5	217	20	18	24	35	1.95
10477--10559	21	4.0	21	70	6	69	26	16	22	33	1.96
12275--12350	24	3.2	24	83	3	73	46	18	14	21	1.84
12292--12407	24	4.8	24	88	6	164	40	18	17	23	1.91
12325--12425	48	2.1	48	87	3	141	41	19	15	22	1.90
13832--13890	30	2.0	30	93	6	102	35	3	16	44	1.65
13980--14058	21	4.0	21	76	18	89	22	35	27	13	1.93
13986--14057	36	2.0	36	91	0	117	23	33	27	15	1.95
14007--14036	15	2.0	15	100	0	60	26	33	26	13	1.93
14149--14191	21	2.0	21	95	0	77	23	20	27	27	1.99
14219--14258	20	1.9	22	90	10	66	37	40	10	12	1.77
17299--17370	36	2.0	36	94	0	126	23	34	27	13	1.93
17320--17349	15	2.0	15	100	0	60	26	33	26	13	1.93
17293--17371	21	4.0	21	78	18	98	22	36	27	12	1.91
17405--17447	21	2.0	21	100	0	86	13	44	27	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17486--17526	21	2.0	21	95	0	73	21	21	29	26	1.99
17554--17593	20	1.9	22	90	10	66	37	40	10	12	1.77
17808--17877	34	2.1	32	86	5	95	31	15	30	22	1.95
26825--26855	16	1.9	16	93	0	53	25	29	16	29	1.96
31870--32029	32	5.1	31	81	4	153	31	20	18	30	1.96
33731--33780	23	2.2	23	89	7	75	38	12	4	46	1.60
39988--40060	23	3.4	21	69	21	53	30	1	15	53	1.50
39975--40060	42	2.0	42	95	0	154	32	1	13	52	1.49
39975--40039	19	3.2	19	69	23	60	35	1	12	50	1.49

Tables:   1

The End!