genome.fa.s1902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001902.1 Hibiscus syriacus cultivar Beakdansim tig00003853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166863

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4584--4612	13	2.2	13	100	0	58	41	10	6	41	1.66
10479--10527	2	24.5	2	100	0	98	48	0	0	51	1.00
13971--14009	17	2.3	17	100	0	78	12	23	46	17	1.83
14007--14104	19	5.1	19	73	13	74	29	25	25	19	1.98
14011--14104	9	9.7	10	74	11	72	29	25	25	19	1.98
21373--21407	17	2.1	17	100	0	70	14	22	45	17	1.84
21405--21444	19	2.1	19	100	0	80	25	22	25	27	2.00
21421--21502	9	8.4	10	72	11	55	28	21	28	21	1.99
21428--21501	29	2.5	30	84	6	89	29	22	27	20	1.98
28751--28800	12	4.3	12	80	10	68	12	22	46	20	1.83
28808--28873	10	6.8	9	73	13	51	28	24	27	19	1.99
28815--28873	20	2.9	19	78	9	64	30	22	27	20	1.98
28815--28873	10	5.9	10	74	18	52	30	22	27	20	1.98
31601--31649	20	2.5	20	86	0	71	32	24	4	38	1.74
31760--31839	31	2.6	30	80	11	90	42	1	3	52	1.27
31793--31842	20	2.5	20	78	12	59	40	2	2	56	1.22
32565--32651	31	2.8	30	81	10	95	54	3	1	41	1.25
32560--32627	19	3.5	20	73	15	54	54	1	2	41	1.24
33118--33160	22	2.0	20	86	8	59	39	0	0	60	0.97
33354--33470	60	2.0	60	96	0	216	42	5	1	49	1.37
34376--35313	228	4.1	228	81	2	925	31	22	23	23	1.99
48122--48150	12	2.5	12	94	5	51	86	0	0	13	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48313--48375	24	2.7	23	81	13	67	55	3	0	41	1.16
50821--50846	7	3.7	7	100	0	52	15	57	0	26	1.38
57255--57294	21	1.9	21	85	10	55	12	25	40	22	1.89
57275--57326	23	2.3	23	77	6	63	19	21	40	19	1.92
61135--61174	21	1.9	21	85	10	55	35	10	2	52	1.48
66118--66175	20	2.7	20	84	10	71	31	18	22	27	1.97
70193--70250	20	2.7	20	84	10	71	31	18	22	27	1.97
73776--73815	18	2.2	18	95	0	71	22	17	32	27	1.96
75495--75535	18	2.3	18	91	4	66	63	2	4	29	1.28
79635--80107	181	2.6	182	86	0	651	42	13	16	27	1.85
82301--82341	21	2.0	21	90	0	64	41	12	26	19	1.87
82378--82443	33	2.0	33	82	5	80	27	3	48	21	1.64
84234--84282	19	2.6	19	96	0	89	32	2	10	55	1.45
84395--85158	200	3.8	200	95	0	1350	36	15	18	30	1.91
85414--85457	22	2.0	21	82	8	52	38	9	11	40	1.73
85475--85547	23	3.2	23	88	0	110	35	5	20	38	1.76
85960--86032	23	3.2	23	82	0	92	34	5	20	39	1.76
85182--86435	485	2.6	486	95	1	2230	41	7	9	40	1.66
86509--86556	23	2.1	23	92	0	78	35	18	10	35	1.85
88505--88536	15	2.1	15	100	0	64	34	12	12	40	1.81
89108--89154	24	2.0	24	87	8	69	42	0	6	51	1.27
97037--97075	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97287--97327	2	20.5	2	100	0	82	51	0	0	48	1.00
100642--100681	4	10.0	4	100	0	80	25	0	25	50	1.50
103947--103981	18	1.9	18	94	0	61	45	17	14	22	1.84
103966--104085	31	3.7	31	77	8	141	39	14	24	22	1.91
106928--106981	24	2.2	24	77	6	56	9	14	27	48	1.75
106938--106970	14	2.4	14	94	0	57	6	12	27	54	1.60
106939--107013	24	3.1	24	86	3	89	12	9	21	57	1.62
107738--107812	10	7.7	10	67	21	52	8	12	22	57	1.60
107744--107808	16	4.1	16	93	0	112	6	12	24	56	1.58
107878--107910	16	2.1	16	100	0	66	6	12	24	57	1.57
112844--112878	16	2.2	16	100	0	70	45	17	20	17	1.85
112897--112933	2	18.5	2	100	0	74	51	0	0	48	1.00
115493--115621	41	3.1	40	81	9	116	49	4	17	28	1.66
115682--115732	21	2.5	20	87	3	66	66	0	1	31	1.03
115693--115735	23	2.0	23	86	9	63	69	0	0	30	0.88
116382--116460	3	26.3	3	100	0	158	67	0	0	32	0.91
116859--116887	10	2.9	10	100	0	58	51	0	10	37	1.36
119518--119558	16	2.6	16	88	3	57	41	7	17	34	1.77
120838--120924	46	1.9	45	88	2	129	40	6	14	37	1.73
122005--122047	2	21.5	2	100	0	86	51	0	0	48	1.00
127160--127240	30	2.7	30	83	9	76	45	3	7	43	1.49
127180--127240	30	2.0	30	87	6	88	45	4	4	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127188--127251	30	2.1	30	85	5	85	48	3	3	45	1.34
128114--128187	33	2.2	33	97	0	139	28	13	45	12	1.79
138012--138061	26	1.9	26	84	8	66	36	8	0	56	1.29
143653--143733	33	2.5	33	83	0	108	56	25	8	8	1.58
155441--155564	50	2.4	52	85	4	173	27	25	20	26	1.99
159646--159680	18	1.9	18	94	0	61	25	20	22	31	1.98
161422--161460	20	2.0	19	90	5	60	43	0	23	33	1.54
161573--161699	51	2.5	51	87	1	166	17	29	35	18	1.93

Tables:   1

The End!