genome.fa.s1903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001903.1 Hibiscus syriacus cultivar Beakdansim tig00003854_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107738

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766--813	23	2.2	23	85	7	64	8	10	14	66	1.43
3938--3976	17	2.3	17	95	0	69	35	0	7	56	1.28
5625--5654	14	2.1	14	100	0	60	43	0	13	43	1.43
9847--9903	27	2.1	27	100	0	114	29	35	10	24	1.89
12488--12516	2	14.5	2	100	0	58	51	0	0	48	1.00
12674--12765	48	1.9	48	84	0	121	48	19	14	17	1.80
12674--12741	24	2.8	24	79	0	82	52	20	13	13	1.73
12703--12768	24	2.8	23	79	6	69	43	19	15	21	1.87
12705--12780	24	3.2	25	74	10	61	44	19	15	19	1.86
21427--21504	20	3.8	20	75	18	70	24	25	19	30	1.98
22357--22425	23	3.0	23	80	0	84	28	24	24	21	1.99
22436--22658	103	2.2	103	95	0	410	36	23	13	26	1.92
23474--23524	19	2.7	19	100	0	102	23	25	21	29	1.99
23409--23589	83	2.2	83	83	8	226	24	20	20	33	1.97
23493--23653	64	2.5	64	85	6	193	28	21	18	32	1.96
28116--28179	23	2.8	23	90	0	101	26	26	28	18	1.98
28193--28412	103	2.1	103	94	1	397	37	23	13	25	1.91
29159--29383	64	3.5	64	82	6	233	28	19	19	32	1.96
36982--37049	22	3.3	22	69	20	58	57	1	0	41	1.08
53674--53710	20	1.9	19	89	10	58	5	13	54	27	1.61
64193--64315	33	3.7	33	95	0	210	36	25	17	21	1.94
64651--65109	60	7.6	60	75	5	361	29	28	18	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65079--65218	36	3.9	36	93	0	235	32	27	20	19	1.97
65497--65602	33	3.2	32	77	5	86	28	28	18	24	1.98
67092--67116	7	3.6	7	100	0	50	12	0	0	88	0.53
67346--67442	2	49.5	2	93	4	153	45	0	2	52	1.12
68819--68880	30	2.1	29	82	11	72	70	3	4	20	1.19
70253--70291	18	2.2	18	86	9	53	61	0	15	23	1.33
70253--70304	28	1.9	27	84	7	70	65	0	13	21	1.26
70402--70469	33	2.1	31	84	10	84	44	5	5	44	1.52
70516--70598	35	2.3	35	84	14	98	43	6	6	44	1.53
70403--70605	110	1.8	110	81	12	256	42	6	5	45	1.52
70537--70609	37	1.9	37	86	10	103	42	5	6	45	1.54
71317--72093	84	9.4	80	79	6	761	23	20	25	29	1.99
71314--72102	164	4.8	164	87	2	1089	23	20	25	29	1.99
75470--75516	19	2.4	20	92	3	78	65	8	12	12	1.46
77295--77356	30	2.1	29	82	11	72	70	3	4	20	1.19
78726--78764	18	2.2	18	86	9	53	61	0	15	23	1.33
78726--78777	28	1.9	27	84	7	70	65	0	13	21	1.26
78782--78814	17	1.9	18	88	11	52	54	6	3	36	1.41
78876--78943	33	2.1	32	84	10	86	44	5	5	44	1.52
78990--79072	35	2.3	35	84	14	98	43	6	6	44	1.53
78877--79079	110	1.8	110	81	12	256	42	6	5	45	1.52
79011--79083	37	1.9	37	86	10	103	42	5	6	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80623--80683	31	2.0	31	93	0	104	37	14	22	24	1.92

Tables:   1

The End!