genome.fa.s1904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001904.1 Hibiscus syriacus cultivar Beakdansim tig00003855_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140145

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4593--4663	23	3.1	23	78	6	65	54	0	5	39	1.24
4613--4663	17	3.0	17	80	8	52	52	0	3	43	1.19
4974--5007	18	1.9	17	88	5	50	38	0	0	61	0.96
6319--6355	16	2.4	16	90	4	58	40	0	0	59	0.97
8538--8606	35	2.0	35	88	5	104	33	28	21	15	1.95
8683--8772	23	3.8	23	88	4	126	38	20	13	27	1.90
15686--15856	57	2.9	58	86	4	220	30	15	30	23	1.95
19654--19696	22	1.9	23	85	4	61	51	2	0	46	1.13
19821--19888	8	8.2	8	71	18	50	38	0	5	55	1.24
19938--19988	19	2.7	18	76	8	57	56	1	1	39	1.22
21524--21552	15	1.9	15	100	0	58	17	13	34	34	1.89
40292--40360	23	3.0	23	76	0	75	33	23	21	21	1.97
42276--42316	6	6.8	6	100	0	82	34	17	0	48	1.47
49216--49260	23	2.0	23	86	0	63	26	26	26	20	1.99
75335--75377	21	2.0	21	82	13	52	27	6	23	41	1.80
85513--85580	20	3.3	20	69	18	68	22	22	22	33	1.97
85494--85831	41	8.2	41	95	0	568	21	20	26	31	1.98
85908--85946	6	6.7	6	88	2	53	28	53	15	2	1.55
86614--86656	12	3.8	11	85	11	52	0	18	55	25	1.42
86724--86955	21	11.3	19	63	21	58	31	24	21	22	1.99
86731--86985	41	6.1	42	93	1	426	31	25	21	21	1.98
99051--99091	21	1.9	22	85	5	57	24	24	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100528--100957	220	2.0	220	98	0	835	36	18	14	30	1.91
100941--100975	2	17.5	2	87	0	52	48	2	0	48	1.16
101407--101436	15	1.9	16	93	6	53	0	66	0	33	0.92
102521--102570	25	2.1	23	82	10	57	36	10	6	48	1.61
106793--106887	29	3.3	29	83	0	91	21	30	29	18	1.97
116398--116458	11	5.7	10	74	12	50	19	27	26	26	1.99
116484--116583	52	1.9	52	91	0	164	49	20	3	28	1.63
125886--126377	135	3.6	135	98	0	957	28	10	34	26	1.90
126523--126555	15	2.3	15	89	5	50	42	3	0	54	1.15
129095--129126	13	2.3	15	89	10	50	81	0	3	15	0.82
129226--129303	26	2.9	25	81	7	66	71	1	6	20	1.15
129275--129300	9	2.9	9	100	0	52	80	0	0	19	0.71
130222--130250	13	2.2	13	100	0	58	48	0	6	44	1.29
130874--131083	85	2.5	85	83	1	251	24	19	23	32	1.98
131076--131192	33	3.6	32	85	6	155	33	7	22	36	1.83
131252--131312	17	3.4	17	68	27	54	42	14	22	19	1.88
131245--131847	36	17.2	36	77	13	571	40	13	19	26	1.88
131246--131505	101	2.5	102	83	7	301	41	13	18	26	1.88
131187--131847	174	3.8	174	92	1	1040	40	13	19	27	1.89
131490--131679	101	1.9	102	89	2	301	41	13	18	26	1.88
131613--131677	21	3.4	21	68	24	70	41	12	21	24	1.87
131664--131851	100	1.9	102	83	4	247	39	12	19	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133230--133413	95	1.9	94	89	3	280	30	18	16	34	1.93
134976--135019	16	2.8	16	96	0	79	27	40	9	22	1.84
137084--137139	17	3.1	17	71	26	51	67	0	0	32	0.91
137730--137760	15	2.0	16	93	6	55	32	0	0	67	0.91
138218--138263	22	2.1	22	88	4	67	43	2	0	54	1.12

Tables:   1

The End!