genome.fa.s1907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001907.1 Hibiscus syriacus cultivar Beakdansim tig00003860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72680

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5420--5449	15	1.9	16	93	6	53	26	23	20	30	1.98
5539--5570	3	10.3	3	93	6	55	65	0	0	34	0.93
7532--7657	64	2.0	63	96	1	234	26	20	18	34	1.96
8836--8886	2	25.5	2	100	0	102	49	0	0	50	1.00
9004--9040	12	3.2	12	81	11	51	51	0	8	40	1.32
9031--9065	16	2.2	16	89	0	52	42	0	11	45	1.40
9071--9110	19	2.1	19	90	0	62	35	2	22	40	1.68
9263--9315	2	27.0	2	80	3	63	43	1	5	49	1.37
9664--9707	13	3.3	13	78	6	52	45	0	9	45	1.35
12037--12113	31	2.5	31	80	2	91	27	31	27	14	1.95
11990--12113	63	2.0	63	82	6	153	25	29	28	16	1.97
16966--17090	31	4.0	31	70	8	83	27	25	27	20	1.99
16967--17090	63	2.0	63	82	9	155	26	25	27	20	1.99
22003--22079	31	2.5	31	80	2	91	27	28	27	16	1.97
29787--29862	31	2.4	31	77	2	80	26	30	27	15	1.96
29740--29862	63	2.0	63	82	6	151	26	27	28	17	1.98
32728--32758	13	2.4	13	100	0	62	16	22	45	16	1.85
37713--37741	13	2.2	13	100	0	58	13	20	48	17	1.81
38851--38927	31	2.5	31	78	2	82	28	31	25	14	1.95
41781--41826	18	2.6	18	89	0	74	8	17	52	21	1.71
43832--43925	32	3.0	32	77	10	86	26	27	27	18	1.98
43832--43955	63	2.0	63	82	6	153	26	28	27	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43868--43955	31	2.8	32	82	1	106	25	29	29	15	1.96
49252--49294	13	3.3	13	93	0	77	13	25	46	13	1.81
50252--50300	13	3.4	13	75	24	53	16	20	44	18	1.86
54291--54333	13	3.3	13	96	0	77	16	23	44	16	1.86
59257--59286	13	2.3	13	100	0	60	13	23	46	16	1.82
64266--64316	23	2.2	23	92	0	84	9	21	49	19	1.77
64260--64312	13	4.3	13	79	13	67	13	22	45	18	1.84
65274--65354	2	40.5	2	97	0	153	49	1	0	49	1.08
66894--66953	30	2.0	30	93	0	102	43	5	15	36	1.68
67396--67459	32	2.0	33	90	3	103	25	37	21	15	1.93
67407--67461	18	3.3	18	69	27	57	21	41	21	14	1.89
69940--70109	87	2.0	85	89	2	259	38	11	4	45	1.62
70071--70140	20	3.3	21	70	16	63	51	2	2	42	1.31

Tables:   1

The End!