Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001908.1 Hibiscus syriacus cultivar Beakdansim tig00003863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77134

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
169--326
38
4.1
39
88
4
230
31
23
12
33
1.91
169--326
78
2.0
77
89
3
237
31
23
12
33
1.91
3287--3339
23
2.3
23
96
0
97
49
15
15
20
1.80
3549--3590
17
2.6
17
88
7
61
28
19
16
35
1.93
8803--9009
68
3.1
68
95
1
380
49
8
8
33
1.62
9756--9812
28
2.0
28
93
0
96
29
10
24
35
1.89
20967--21070
53
2.0
52
90
1
163
34
15
15
34
1.89
21184--21224
22
2.0
20
90
9
64
34
4
9
51
1.56
24663--24719
19
3.0
19
94
0
96
35
5
24
35
1.78
25161--25240
21
3.9
21
81
6
110
32
26
18
22
1.97
25161--25251
21
4.6
20
79
8
105
32
24
18
24
1.97
25171--25248
40
2.0
40
97
0
147
33
24
20
21
1.97
25164--25294
56
2.2
59
86
6
178
34
23
19
22
1.96
25496--25520
11
2.3
11
100
0
50
84
8
0
8
0.79
26292--26355
27
2.4
27
84
5
67
53
9
12
25
1.68
29365--29410
25
1.9
25
82
8
60
45
0
6
47
1.28
38702--38763
22
2.8
22
87
0
97
40
12
16
30
1.86
43323--43439
32
3.6
32
78
10
139
23
17
21
38
1.93
43332--43466
64
2.1
64
100
0
270
25
19
18
36
1.94
43348--43453
32
3.3
32
79
10
144
22
19
16
40
1.91
50923--50959
6
6.2
6
100
0
74
35
48
16
0
1.46
51564--51863
21
14.4
21
78
12
271
38
20
18
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51594--51635
19
2.2
19
91
0
66
35
28
16
19
1.93
51560--51946
63
6.2
62
80
9
371
36
21
19
22
1.95
51646--51837
105
1.8
105
94
0
339
37
19
19
23
1.94
51856--51952
21
4.6
21
92
0
149
29
26
21
21
1.99
51585--51952
42
8.8
42
78
10
171
35
21
19
22
1.96
52186--52333
59
2.5
60
80
2
154
35
25
3
36
1.73
52218--52333
60
1.9
59
84
1
151
36
23
2
37
1.69

Tables:   1

The End!