Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001909.1 Hibiscus syriacus cultivar Beakdansim tig00003865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101852

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6470--6517
22
2.3
20
80
19
55
77
0
20
2
0.88
6499--6585
9
10.4
9
71
20
64
73
0
17
9
1.08
6463--6576
7
15.7
7
72
20
58
73
0
18
7
1.06
6470--6590
16
7.8
16
73
14
78
74
0
18
7
1.04
7696--8146
99
4.5
100
91
4
736
29
16
27
26
1.97
7696--8146
200
2.3
200
92
4
752
29
16
27
26
1.97
7696--8146
51
9.0
51
91
4
735
29
16
27
26
1.97
7699--8253
51
10.9
51
87
7
531
29
15
26
28
1.96
8010--8298
51
5.4
56
81
7
187
29
16
23
30
1.96
18766--18803
15
2.5
15
91
0
67
68
0
0
31
0.90
22093--22135
21
2.0
21
81
0
50
30
30
25
13
1.94
22162--22199
20
1.9
20
88
0
58
23
34
31
10
1.89
22955--22998
22
2.0
22
86
0
61
20
25
27
27
1.99
29040--29082
21
2.0
21
86
0
59
32
30
23
13
1.93
29624--29927
149
2.0
149
96
0
563
27
15
20
36
1.93
29906--29950
23
2.0
23
86
0
63
20
24
28
26
1.99
33938--33971
3
11.3
3
93
0
59
0
32
2
64
1.08
37349--37406
2
29.5
2
96
3
109
50
0
0
50
1.00
40778--40815
19
2.1
18
90
5
58
39
7
0
52
1.31
44091--44126
17
2.0
19
89
10
58
66
2
0
30
1.06
47087--47137
26
2.0
26
84
7
68
47
1
3
47
1.32
50146--50187
21
2.1
20
86
8
59
52
0
2
45
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51799--51841
21
2.0
21
81
0
50
30
30
25
13
1.94
52391--52686
149
2.0
149
99
0
583
27
14
20
36
1.92
52665--52709
23
2.0
23
86
0
63
20
24
28
26
1.99
53461--53527
22
3.0
22
100
0
134
26
26
26
19
1.99
53747--53805
30
1.9
31
89
3
93
33
23
6
35
1.82
53820--53891
29
2.5
29
93
0
117
38
12
9
38
1.76
54194--54346
68
2.2
68
86
4
202
17
27
28
26
1.98
54194--54368
68
2.6
67
82
8
185
17
27
27
27
1.98
58261--58460
108
1.8
109
84
5
271
42
7
11
40
1.67
63116--63559
234
1.9
234
88
2
678
27
17
18
36
1.93
65690--65733
16
2.9
16
84
15
51
54
29
11
4
1.56
68873--68921
6
8.2
6
91
8
82
0
67
0
32
0.91
68925--68969
7
6.4
7
100
0
90
15
13
28
42
1.85
69428--69488
27
2.3
26
86
8
86
59
9
3
27
1.45
75271--75321
22
2.3
22
100
0
102
17
41
13
27
1.87
82602--82633
15
2.1
15
100
0
64
25
0
0
75
0.81
82581--82645
22
3.0
22
88
0
85
27
0
1
70
0.96
85219--85262
22
2.0
23
86
4
63
68
2
2
27
1.14
85950--85991
2
21.0
2
100
0
84
50
0
0
50
1.00
88204--88245
22
1.9
22
95
0
75
40
9
21
28
1.84
90083--90122
15
2.7
15
96
3
73
47
5
42
5
1.47
90919--91009
21
4.3
21
77
0
83
31
16
12
39
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90902--90988
42
2.0
43
82
2
104
33
16
13
36
1.88

Tables:   1

The End!