genome.fa.s191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000191.1 Hibiscus syriacus cultivar Beakdansim tig00000341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123283

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5039--5105	21	3.2	21	85	8	84	40	7	2	49	1.46
5053--5136	28	3.0	29	77	8	84	44	10	3	41	1.56
5124--5153	4	7.5	4	92	0	51	50	20	0	30	1.49
5267--5309	22	2.0	21	82	8	52	25	11	4	58	1.52
27871--28012	65	2.2	64	83	1	176	35	18	19	27	1.95
27908--28032	64	1.9	66	88	6	193	34	16	20	28	1.95
29442--29504	21	3.0	21	88	4	90	25	26	22	25	2.00
29448--29504	22	2.7	21	86	5	78	24	28	22	24	2.00
38450--38487	20	1.9	20	84	10	51	44	0	5	50	1.24
41318--41347	13	2.3	13	94	0	51	50	0	0	50	1.00
42697--42722	10	2.6	10	100	0	52	26	11	19	42	1.85
50933--51033	49	2.1	49	96	0	184	36	4	17	40	1.72
53450--53579	63	2.0	64	88	7	192	23	16	18	41	1.89
67712--68257	182	3.0	181	89	1	806	41	13	16	28	1.86
70200--70248	24	2.3	22	80	19	59	46	0	4	48	1.20
70722--70788	33	2.0	33	94	0	116	28	0	47	23	1.52
71253--71291	18	2.2	18	100	0	78	56	0	43	0	0.99
72846--72913	19	3.6	19	97	0	127	32	2	10	54	1.49
73264--74420	199	5.8	199	86	1	1530	37	14	15	32	1.88
77229--77265	18	2.1	18	89	0	56	32	5	10	51	1.60
77221--77273	24	2.2	24	86	0	70	35	3	13	47	1.61
77645--78980	201	6.8	200	80	8	1417	40	12	15	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77645--78980	200	6.8	199	82	6	1545	40	12	15	31	1.85
78210--78574	179	2.0	179	94	0	631	41	12	16	29	1.85
78389--78968	191	2.9	190	81	6	644	40	12	16	31	1.85
77803--78964	570	2.0	577	85	3	1583	40	12	16	31	1.85
83070--83748	199	3.4	199	83	6	815	38	14	15	31	1.87
83850--83894	23	2.0	23	95	0	81	37	20	8	33	1.83
106298--106403	50	2.3	47	81	14	114	50	15	1	33	1.55
108611--108678	27	2.5	27	92	2	118	48	5	2	42	1.42
113147--113186	21	2.0	21	90	5	64	20	0	10	70	1.16
114158--114190	17	1.9	17	93	0	57	36	12	0	51	1.39
115417--115466	9	4.9	11	74	18	54	44	0	10	46	1.37
115417--115466	20	2.5	20	86	0	73	44	0	10	46	1.37

Tables:   1

The End!