genome.fa.s1912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001912.1 Hibiscus syriacus cultivar Beakdansim tig00003870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84483

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398--3640	742	3.0	745	86	3	3181	28	18	18	33	1.95
1398--3640	744	3.0	740	86	4	3146	28	18	18	33	1.95
5480--5531	19	2.7	19	81	3	59	38	15	19	26	1.91
8337--8406	19	3.8	18	77	9	61	34	15	27	22	1.95
8354--8403	18	2.7	19	84	6	66	38	18	26	18	1.93
14115--14164	20	2.5	20	86	3	64	14	28	42	16	1.86
14115--14193	19	3.9	20	81	6	88	16	30	35	17	1.92
17547--17632	21	4.2	20	86	5	109	16	29	37	17	1.91
17546--17629	42	2.0	42	90	0	132	17	29	34	17	1.94
23925--23971	21	2.3	21	77	3	51	36	4	4	55	1.39
31183--31221	21	1.9	20	89	5	60	38	10	7	43	1.67
30912--32261	199	7.0	183	75	13	819	39	13	12	33	1.83
31074--32390	199	6.6	198	79	4	1254	40	13	12	33	1.83
31099--32396	398	3.2	396	82	3	1480	40	13	12	33	1.83
32611--33212	225	2.7	225	86	4	838	32	15	13	38	1.86
52708--52820	20	5.7	20	77	8	97	31	22	11	34	1.90
52977--53014	16	2.5	15	84	12	51	28	5	0	65	1.14
56069--56104	18	2.0	18	94	0	63	55	25	2	16	1.55
56286--56324	20	2.0	20	94	0	69	33	20	20	25	1.97
56287--56332	20	2.3	20	84	0	65	36	21	21	19	1.95
56320--56358	14	2.9	14	82	17	55	41	30	20	7	1.80
56433--56590	64	2.5	64	95	3	282	51	17	1	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57908--58035	21	6.1	21	83	2	159	23	20	37	18	1.94
57911--58039	42	3.1	41	89	2	186	23	20	37	18	1.94
58350--58489	63	2.2	63	81	5	158	30	35	14	20	1.92
60192--60271	20	4.3	20	69	18	73	48	18	21	11	1.79
60201--60266	34	1.9	34	87	0	96	48	19	19	12	1.80
61760--61801	22	1.9	22	90	0	66	33	9	9	47	1.68
61729--61996	112	2.4	113	91	1	441	25	12	13	48	1.78
62078--62331	73	3.5	73	91	3	422	32	13	14	39	1.85
64163--64202	17	2.4	17	100	0	80	45	20	7	27	1.78
73962--74042	23	3.7	21	80	4	72	25	32	22	19	1.98
73960--74023	23	2.8	23	85	2	85	25	31	21	21	1.98
74513--74547	13	2.6	14	90	4	54	25	20	5	48	1.71
76611--76653	20	2.2	20	91	0	68	18	37	25	18	1.94
76611--76661	20	2.5	20	83	3	57	21	31	29	17	1.96
83424--83488	27	2.4	27	84	2	76	23	7	33	35	1.83

Tables:   1

The End!