genome.fa.s1913.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001913.1 Hibiscus syriacus cultivar Beakdansim tig00003871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71156

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1846--2018	93	1.9	93	85	4	242	32	8	9	49	1.67
1843--2041	47	4.3	46	80	8	199	32	10	9	47	1.69
2156--2234	35	2.3	35	100	0	158	10	16	18	54	1.70
4214--4453	21	11.6	21	80	8	278	32	22	22	23	1.98
4214--4472	41	6.3	42	82	10	302	32	22	22	23	1.98
4462--4668	21	9.9	21	83	8	253	24	22	22	30	1.99
4234--4453	62	3.5	62	92	2	379	32	21	22	23	1.98
4462--4619	83	1.9	83	94	0	280	23	22	24	30	1.99
4468--4675	62	3.3	62	82	5	197	24	22	22	30	1.99
4778--4808	16	1.9	16	93	0	53	35	38	25	0	1.56
5298--5322	6	4.2	6	100	0	50	0	16	48	36	1.46
5415--5637	42	5.3	42	89	3	313	37	21	19	21	1.95
5461--5628	21	7.8	21	73	18	141	38	22	20	19	1.94
5415--5637	86	2.6	84	90	2	331	37	21	19	21	1.95
5489--5643	21	7.4	21	75	16	142	36	23	20	19	1.95
7714--7744	16	1.9	16	93	0	53	35	25	3	35	1.72
10302--10326	13	1.9	13	100	0	50	16	52	24	8	1.70
10284--10337	18	3.3	17	73	24	53	20	46	18	14	1.84
12801--12916	24	4.8	24	82	6	119	24	14	17	43	1.86
12799--12916	48	2.4	48	80	9	141	24	14	17	43	1.87
12805--12933	24	5.4	24	82	3	98	25	12	18	43	1.85
14983--15021	18	2.2	18	95	0	69	20	48	20	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17441--17558	24	4.9	25	86	7	147	25	14	19	40	1.89
22539--22653	51	2.3	51	87	3	160	36	3	6	53	1.45
31940--32013	14	5.4	14	75	15	59	44	1	0	54	1.08
31940--32029	20	4.7	20	76	10	89	43	1	1	54	1.14
31945--31994	11	4.7	11	82	9	59	42	0	0	58	0.98
31947--32031	3	29.7	3	76	9	70	42	1	1	55	1.15
31947--32031	17	5.1	17	78	17	74	42	1	1	55	1.15
31948--32020	14	5.4	14	78	15	64	43	1	0	54	1.08
43882--43921	18	2.3	17	86	4	53	82	0	15	2	0.77
45125--45507	55	6.9	55	88	1	534	32	13	24	28	1.94
45126--45507	165	2.3	166	90	0	595	32	13	24	28	1.94
45744--45824	14	5.9	14	80	13	80	43	2	0	54	1.13
45751--45814	11	5.9	11	78	8	60	40	3	0	56	1.15
45751--45835	3	29.7	3	76	9	70	41	2	1	55	1.20
45751--45835	17	5.1	16	80	10	75	41	2	1	55	1.20
45776--45833	23	2.5	23	77	0	62	41	1	1	55	1.20
49591--49634	22	2.0	23	82	13	56	56	11	20	11	1.64
52994--53495	55	9.1	54	87	3	598	31	24	16	27	1.96
52994--53495	165	3.0	165	87	2	681	31	24	16	27	1.96
53506--53577	37	1.9	38	91	2	119	20	19	18	41	1.90
54858--54954	7	13.7	7	75	20	69	10	16	0	73	1.10
54856--54966	29	3.9	29	70	22	74	10	16	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54842--54954	21	5.2	21	73	19	90	10	15	0	73	1.09
62083--62117	17	2.1	17	88	0	52	11	37	11	40	1.77
66625--66681	10	5.7	10	80	11	55	84	8	7	0	0.79
66633--66681	11	4.5	11	84	5	55	83	8	8	0	0.81
66633--66697	32	2.0	32	90	0	103	78	12	9	0	0.96
66640--66690	11	4.6	11	82	0	57	78	11	9	0	0.97

Tables:   1

The End!