Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001914.1 Hibiscus syriacus cultivar Beakdansim tig00003875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83547

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1959--2063
36
2.9
35
83
9
124
35
24
19
20
1.96
2190--2272
42
2.0
42
87
0
121
27
22
19
30
1.98
2063--2316
135
1.9
132
87
7
370
31
18
20
30
1.96
2766--3554
54
14.6
54
84
4
828
33
19
25
20
1.96
3413--3529
60
2.0
60
94
0
207
29
18
29
21
1.97
5525--5600
36
2.1
36
85
7
100
47
1
3
47
1.29
7775--7842
17
4.0
17
79
11
68
38
16
7
38
1.76
9663--9691
14
2.0
15
93
6
51
20
0
27
51
1.47
11681--11726
17
2.7
17
86
0
56
39
19
2
39
1.64
14048--14122
31
2.5
29
75
12
71
46
6
4
42
1.48
15446--15533
20
4.4
20
83
0
113
47
14
15
21
1.82
15446--15533
40
2.2
40
89
0
131
47
14
15
21
1.82
21731--21793
27
2.3
27
86
0
99
34
19
14
31
1.91
21849--21905
22
2.5
24
88
8
91
40
0
0
59
0.97
29845--29879
17
1.9
19
88
11
56
45
17
5
31
1.71
30136--30209
20
3.7
20
90
0
103
27
24
20
28
1.99
30284--30710
174
2.5
172
88
3
624
41
15
21
22
1.90
30829--30867
12
3.2
12
85
3
51
43
0
2
53
1.14
30841--30892
19
2.9
18
76
18
56
48
0
1
50
1.12
31928--31979
26
2.0
25
85
3
68
21
3
1
73
1.10
31943--31977
15
2.3
15
90
0
52
20
2
2
74
1.08
34291--34338
20
2.4
19
82
6
51
66
6
4
22
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37411--37444
17
2.0
17
88
11
52
61
2
5
29
1.34
38083--38131
22
2.1
24
85
7
66
73
4
4
18
1.15
41476--41520
20
2.2
20
92
0
72
37
13
22
26
1.91
42618--42763
59
2.4
59
81
7
170
32
17
15
33
1.92
45182--45216
10
3.6
10
84
7
54
11
25
31
31
1.91
45271--45346
29
2.6
29
82
0
89
21
9
26
43
1.82
52422--52459
19
2.0
19
100
0
76
15
21
26
36
1.93
52422--52459
10
3.9
10
82
6
51
15
21
26
36
1.93
52423--52463
9
4.3
10
84
9
59
14
24
26
34
1.94
52528--52603
29
2.6
29
78
0
80
21
7
26
44
1.79
54083--54431
141
2.5
138
85
4
448
46
14
13
25
1.80
56760--56796
18
2.1
18
100
0
74
10
27
18
43
1.83
56859--56899
21
2.0
21
85
9
57
31
12
0
56
1.36
60512--60542
14
2.2
14
94
0
53
67
0
0
32
0.91
61534--61861
45
7.3
45
92
0
530
21
22
12
44
1.85
68453--68644
45
4.3
45
93
1
323
20
22
12
44
1.84
72330--72388
31
1.9
31
92
0
100
38
5
6
49
1.52
72622--72685
17
3.5
19
78
18
82
3
14
31
51
1.57
76745--76788
23
1.9
23
90
0
70
15
20
25
38
1.92
78727--78767
21
1.9
22
95
5
75
48
0
0
51
1.00

Tables:   1

The End!