genome.fa.s1915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001915.1 Hibiscus syriacus cultivar Beakdansim tig00003877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81206

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
857--926	22	3.2	22	69	15	72	61	8	17	12	1.55
845--971	44	2.9	44	92	2	211	61	6	15	16	1.53
881--948	22	3.1	21	66	14	57	61	7	13	17	1.53
7760--7815	21	2.7	21	80	0	67	66	1	3	28	1.19
9270--9671	45	8.9	45	88	0	590	22	21	11	44	1.84
9920--10025	55	1.9	55	92	3	178	36	13	10	39	1.78
11541--11565	6	4.2	6	100	0	50	84	0	0	16	0.63
11609--11836	73	3.2	72	87	8	308	43	8	3	44	1.51
11609--11836	35	6.4	34	84	12	273	43	8	3	44	1.51
12574--12623	23	2.2	23	96	0	91	30	22	4	44	1.71
15517--15547	15	2.1	14	94	5	53	29	0	0	70	0.87
20537--20602	22	3.0	22	81	0	78	33	24	15	27	1.95
20944--21130	44	4.2	44	85	3	252	31	22	7	37	1.82
20993--21064	24	3.2	24	62	22	64	26	23	11	38	1.88
20944--21130	88	2.1	88	89	5	288	31	22	7	37	1.82
24393--24503	54	2.1	54	81	3	125	37	4	9	47	1.57
29192--29229	17	2.2	18	85	4	51	39	5	18	36	1.73
30222--30498	141	2.0	141	97	0	518	28	12	12	46	1.78
38756--38965	113	1.9	113	87	4	316	44	8	9	38	1.66
39474--39560	3	29.0	3	82	11	99	34	1	0	64	1.01
40981--41187	111	1.9	112	87	5	312	38	9	8	43	1.67
43181--43234	14	3.8	14	85	2	63	24	14	7	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46401--46450	6	8.3	6	85	14	68	80	0	20	0	0.72
46405--46445	16	2.6	16	92	3	66	80	0	19	0	0.71
46405--46450	22	2.1	21	92	4	74	80	0	19	0	0.71
48717--49021	115	2.7	115	98	0	592	30	14	21	33	1.93
48974--49279	83	3.6	83	91	6	504	25	13	24	37	1.91
49026--49306	92	3.1	92	92	5	463	27	14	23	35	1.93
49603--49802	95	2.1	95	96	0	364	38	15	14	32	1.87
50116--50899	113	7.0	113	89	2	1100	36	14	18	29	1.91
50818--51058	124	2.0	120	82	3	293	41	16	17	24	1.90
51234--51323	3	30.0	3	82	10	105	34	1	0	64	1.01
52606--52649	12	3.7	11	82	11	52	31	6	0	61	1.22
52760--52969	113	1.9	113	87	4	316	38	9	7	44	1.66
53588--53709	40	3.0	41	71	17	117	27	16	21	34	1.95
54606--54706	43	2.4	43	83	6	125	29	26	18	24	1.98
54731--54852	43	2.8	43	91	0	190	33	21	15	29	1.94
54738--54892	81	1.9	83	81	6	188	30	20	16	32	1.95
56498--56551	22	2.5	22	80	11	58	59	3	5	31	1.38
56674--56715	16	2.7	16	88	3	59	50	0	2	47	1.14
57522--57547	2	13.0	2	100	0	52	50	0	0	50	1.00
63543--63605	29	2.2	29	82	5	74	14	11	7	66	1.43
64175--64399	7	31.0	7	70	18	99	40	1	5	52	1.35
64175--64391	2	117.5	2	64	28	83	41	1	5	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64173--64367	18	10.6	18	72	18	111	41	1	6	50	1.38
64183--64394	38	5.7	37	76	12	120	41	1	5	51	1.35
64252--64383	36	3.6	38	76	14	127	40	0	3	55	1.21
64247--64399	5	31.4	5	68	25	80	41	0	2	55	1.18
64247--64397	38	3.7	41	77	16	154	41	0	2	55	1.18
69061--69103	21	2.0	21	90	0	68	34	34	13	16	1.88
69394--69443	24	2.1	24	88	0	73	34	24	18	24	1.96
76865--76911	24	2.0	24	83	8	60	46	14	21	17	1.83
77767--78017	2	130.5	2	64	24	87	39	2	6	50	1.42
77767--78020	7	36.4	7	69	19	122	39	2	6	51	1.42
77821--77964	23	5.9	24	68	24	63	38	2	5	53	1.36
77767--78020	20	13.6	18	67	19	112	39	2	6	51	1.42
77818--77994	43	4.1	42	71	16	80	37	1	6	54	1.36
79339--79385	15	3.1	14	87	12	58	25	8	2	63	1.34

Tables:   1

The End!