Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001916.1 Hibiscus syriacus cultivar Beakdansim tig00003878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77802
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:100 original size:21 final size:21
Alignment explanation
Indices: 60--101 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50 TCTTTCGTTA
*
60 TTTATTATGAAATTAAATATT
1 TTTATTATCAAATTAAATATT
* *
81 TTTATTATCAATTTATATATT
1 TTTATTATCAAATTAAATATT
102 CTTAAATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTATTATCAAATTAAATATT
Found at i:4058 original size:20 final size:18
Alignment explanation
Indices: 4035--4087 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
4025 TAATTTACCC
4035 TTAATTTAATTATAAAATAT
1 TTAATTTAA-TATAAAAT-T
*
4055 TTAATACTAATATAAAATT
1 TTAAT-TTAATATAAAATT
4074 TTAACTTTAA-ATAA
1 TTAA-TTTAATATAA
4088 TATAATTATC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 4 0.14
19 8 0.28
20 14 0.48
21 3 0.10
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATTTAATATAAAATT
Found at i:9022 original size:13 final size:13
Alignment explanation
Indices: 9004--9033 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
8994 ATCTTTCAGG
9004 AGAAATTTCCAAT
1 AGAAATTTCCAAT
9017 AGAAATTTCCAAT
1 AGAAATTTCCAAT
9030 AGAA
1 AGAA
9034 GGAAACAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (13 bp):
AGAAATTTCCAAT
Found at i:9297 original size:20 final size:20
Alignment explanation
Indices: 9196--9297 Score: 57
Period size: 20 Copynumber: 5.2 Consensus size: 20
9186 GATAGTTTCC
9196 CTCGAAACAGAAGATTTTAA
1 CTCGAAACAGAAGATTTTAA
**** **
9216 CTCGCTTGAGATAG--TTTCC
1 CTCGAAACAGA-AGATTTTAA
9235 CTCGAAACAGAAGATTTTAA
1 CTCGAAACAGAAGATTTTAA
**** * **
9255 CTCGCTTGAG-ATATTTTCC
1 CTCGAAACAGAAGATTTTAA
9274 CTCGAAACAGAAGATTTTAA
1 CTCGAAACAGAAGATTTTAA
9294 CTCG
1 CTCG
9298 CTTGAGATAG
Statistics
Matches: 52, Mismatches: 26, Indels: 8
0.60 0.30 0.09
Matches are distributed among these distances:
18 2 0.04
19 22 0.42
20 26 0.50
21 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (20 bp):
CTCGAAACAGAAGATTTTAA
Found at i:9516 original size:39 final size:39
Alignment explanation
Indices: 9185--9509 Score: 506
Period size: 39 Copynumber: 8.3 Consensus size: 39
9175 GTCTCACCTA
*
9185 AGATAGTTTCCCTCGAAACAGAAGATTTTAACTCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
*
9224 AGATAGTTTCCCTCGAAACAGAAGATTTTAACTCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
* *
9263 AGATATTTTCCCTCGAAACAGAAGATTTTAACTCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
*
9302 AGATAGTTTCCCTAGAAACAGAAGATTTTATCTCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
* *
9341 AGATAGTTTCTCTCGAAACAAAAGATTTTATCTCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
*
9380 AGATAGTTTCCCTCGAAACAGAAGATTTTATCCCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
* * *
9419 AGATAGTTTCTCTCGAAACAGAAGATTTTGTCTCGCTTA
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
* * *
9458 AGATAGTTTCTCTCAAAACAGAAGATTTTGTCTCGCTTG
1 AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
* *
9497 AGACAATTTCCCT
1 AGATAGTTTCCCT
9510 TAAAACAAAT
Statistics
Matches: 267, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 267 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (39 bp):
AGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTG
Found at i:9534 original size:36 final size:36
Alignment explanation
Indices: 9443--9552 Score: 103
Period size: 36 Copynumber: 3.0 Consensus size: 36
9433 GAAACAGAAG
* * * * *
9443 ATTTTGTCTCGCTTAAGATAGTTTCTCTCAAAACAGAA
1 ATTTTGTCTCGCTTGAGACAATTTCCCTTAAAAC--AA
9481 GATTTTGTCTCGCTTGAGACAATTTCCCTTAAAACAA
1 -ATTTTGTCTCGCTTGAGACAATTTCCCTTAAAACAA
** * * *
9518 ATTTTGTCTCTTTTGAGACAGTTTCTCTTGAAACA
1 ATTTTGTCTCGCTTGAGACAATTTCCCTTAAAACA
9553 CAAAATCTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
36 30 0.49
37 2 0.03
39 29 0.48
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (36 bp):
ATTTTGTCTCGCTTGAGACAATTTCCCTTAAAACAA
Found at i:9672 original size:66 final size:66
Alignment explanation
Indices: 9494--9691 Score: 245
Period size: 66 Copynumber: 3.0 Consensus size: 66
9484 TTTGTCTCGC
** * *
9494 TTGAGACAATTTCCCTTAAAACAAATTTTGTCTCTTTTGAGACAGTTTCTCTTGAAACACAAAAT
1 TTGAGACTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AAAAT
9559 CT
65 CT
* *** * * *
9561 TTGA-ATATGTTTCTAATGAAACAAATTTTGTCTCGCATGAGACAGTTTCTCTTGAAACAATAAT
1 TTGAGA-CTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAAAT
9625 CT
65 CT
* *
9627 TTGAGACTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAAACAGTTTCCCTTGAAACAAGAAAT
1 TTGAGACTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA-AAAT
9692 GTATCTCACT
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
66 57 0.53
67 51 0.47
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (66 bp):
TTGAGACTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAAATC
T
Found at i:11043 original size:14 final size:15
Alignment explanation
Indices: 11016--11048 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
11006 ACTTTTGTCA
*
11016 TAAAAACTTTTTTTT
1 TAAAAACTTGTTTTT
11031 TAAAAA-TTGTTTTT
1 TAAAAACTTGTTTTT
11045 TAAA
1 TAAA
11049 GACGTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
TAAAAACTTGTTTTT
Found at i:11810 original size:54 final size:54
Alignment explanation
Indices: 11745--11852 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
11735 TTAAATTTAA
11745 AATTTAATAACAATGGGGTAGTTTACGTTATCTTTTAAATATAATTACAATCAG
1 AATTTAATAACAATGGGGTAGTTTACGTTATCTTTTAAATATAATTACAATCAG
11799 AATTTAATAACAATGGGGTAGTTTACGTTATCTTTTAAATATAATTACAATCAG
1 AATTTAATAACAATGGGGTAGTTTACGTTATCTTTTAAATATAATTACAATCAG
11853 TGATGGACAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (54 bp):
AATTTAATAACAATGGGGTAGTTTACGTTATCTTTTAAATATAATTACAATCAG
Found at i:17008 original size:13 final size:13
Alignment explanation
Indices: 16986--17015 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16976 TACACTTTCC
16986 TAAAGACATAATT
1 TAAAGACATAATT
*
16999 TAAAGGCATAATT
1 TAAAGACATAATT
17012 TAAA
1 TAAA
17016 CATAATTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (13 bp):
TAAAGACATAATT
Found at i:20768 original size:60 final size:60
Alignment explanation
Indices: 20642--20768 Score: 146
Period size: 60 Copynumber: 2.1 Consensus size: 60
20632 AATAGTCCCC
* * ** ** *
20642 TGACTATAGGATATTATTTTATTGAGTCCTCTAATTATTAAAAATTATGAAATGGTCCCT
1 TGACTATAGGATATTATTTTATTGAGTCCACTAACTATTAAAAATTACAAAATCCTCACT
* * * * *
20702 TAACTATAGGGTATTATTTTGTTGAGTCCACTGACTATTAAAACTTACAAAATCCTCACT
1 TGACTATAGGATATTATTTTATTGAGTCCACTAACTATTAAAAATTACAAAATCCTCACT
20762 TGACTAT
1 TGACTAT
20769 TCATATATTC
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (60 bp):
TGACTATAGGATATTATTTTATTGAGTCCACTAACTATTAAAAATTACAAAATCCTCACT
Found at i:21082 original size:84 final size:83
Alignment explanation
Indices: 20928--21094 Score: 273
Period size: 83 Copynumber: 2.0 Consensus size: 83
20918 TGTCATCAAT
*
20928 TTTTAACGAAAAATGACGAGTTTGAAACATATAAATAGTCAACGACCATTTTGTAACTTTTAATA
1 TTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAACGACCATTTTGTAACTTTTAATA
20993 GTCGAGGGACTT-AACAAA
66 GTCGAGGGA-TTCAACAAA
* *
21011 TTTTAACGAAAAAGGATGAGTTTGAAATATATAAATAGTCAGACGACCATTTTGTAACTTTTAAT
1 TTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCA-ACGACCATTTTGTAACTTTTAAT
*
21076 ATTCGAGGGATTCAACAAA
65 AGTCGAGGGATTCAACAAA
21095 GCAACACGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
83 40 0.51
84 38 0.49
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (83 bp):
TTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAACGACCATTTTGTAACTTTTAATA
GTCGAGGGATTCAACAAA
Found at i:21122 original size:60 final size:59
Alignment explanation
Indices: 21055--21190 Score: 193
Period size: 60 Copynumber: 2.3 Consensus size: 59
21045 ATAGTCAGAC
* * * * *
21055 GACCATTTTGTAACTTTTAATATTCGAGGGATTCAACAAAGCAACACGCTATAGTTAGGG
1 GACCATTTTGTAACTTTTAATAGTCAAGGGACTCAACAAAACAACACCCTATAG-TAGGG
*
21115 GACCATTTTGTAACTTTTAATAGTCAAGGGACTCAACAAAACAACACCCTATAGTCGGG
1 GACCATTTTGTAACTTTTAATAGTCAAGGGACTCAACAAAACAACACCCTATAGTAGGG
21174 GACCATTTGTGT-ACTTT
1 GACCATTT-TGTAACTTT
21191 ACTCTTAAGT
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
59 17 0.25
60 52 0.75
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (59 bp):
GACCATTTTGTAACTTTTAATAGTCAAGGGACTCAACAAAACAACACCCTATAGTAGGG
Found at i:22216 original size:34 final size:35
Alignment explanation
Indices: 22172--22249 Score: 88
Period size: 34 Copynumber: 2.2 Consensus size: 35
22162 CTTAAAATTT
* *
22172 TAATACATGCATCAT-ACATACATAT-ATACATACA
1 TAATATATGCAT-ATAACATACATATCATACACACA
**
22206 TAATATATGCATATAACATATGTATCATACACACA
1 TAATATATGCATATAACATACATATCATACACACA
22241 TCAATATAT
1 T-AATATAT
22250 TTTTATAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 2 0.05
34 19 0.51
35 9 0.24
36 7 0.19
ACGTcount: A:0.46, C:0.18, G:0.04, T:0.32
Consensus pattern (35 bp):
TAATATATGCATATAACATACATATCATACACACA
Found at i:22334 original size:4 final size:4
Alignment explanation
Indices: 22325--22363 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
22315 AGTCTATGTA
* *
22325 ATGC ATGC ATAC ATGC ATGC ATGC ATTC ATGC ATGC ATG
1 ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATG
22364 TGCATATAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (4 bp):
ATGC
Found at i:22625 original size:4 final size:4
Alignment explanation
Indices: 22626--22685 Score: 68
Period size: 4 Copynumber: 15.0 Consensus size: 4
22616 ATGCATGCAT
* * * *
22626 CATA CATA CATA CATA CATG CATG CAT- CATA CATA CATA CATG CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
22673 CATA CATA TCATA
1 CATA CATA -CATA
22686 AAATCAAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
3 3 0.06
4 44 0.86
5 4 0.08
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.27
Consensus pattern (4 bp):
CATA
Found at i:22654 original size:27 final size:27
Alignment explanation
Indices: 22616--22675 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
22606 AGTCTATGTA
22616 ATGCATGCATCATACATACATACATAC
1 ATGCATGCATCATACATACATACATAC
*
22643 ATGCATGCATCATACATACATACATGC
1 ATGCATGCATCATACATACATACATAC
22670 ATGCAT
1 ATGCAT
22676 ACATATCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (27 bp):
ATGCATGCATCATACATACATACATAC
Found at i:22656 original size:23 final size:24
Alignment explanation
Indices: 22619--22685 Score: 111
Period size: 23 Copynumber: 2.8 Consensus size: 24
22609 CTATGTAATG
22619 CATGCAT-CATACATACATACATA
1 CATGCATGCATACATACATACATA
22642 CATGCATGCAT-CATACATACATA
1 CATGCATGCATACATACATACATA
22665 CATGCATGCATACATATCATA
1 CATGCATGCATACATA-CATA
22686 AAATCAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
23 30 0.73
24 7 0.17
25 4 0.10
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.27
Consensus pattern (24 bp):
CATGCATGCATACATACATACATA
Found at i:22771 original size:15 final size:16
Alignment explanation
Indices: 22747--22779 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22737 ACATACATTA
22747 ATACACACAT-TATGC
1 ATACACACATATATGC
*
22762 ATACATACATATATGC
1 ATACACACATATATGC
22778 AT
1 AT
22780 GTAATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.30
Consensus pattern (16 bp):
ATACACACATATATGC
Found at i:22815 original size:7 final size:7
Alignment explanation
Indices: 22794--22848 Score: 67
Period size: 7 Copynumber: 8.0 Consensus size: 7
22784 TACATATATA
22794 AGGGTTT
1 AGGGTTT
*
22801 A-TGTTT
1 AGGGTTT
22807 AGGGTTT
1 AGGGTTT
22814 AGGGTTT
1 AGGGTTT
*
22821 AGAGTTT
1 AGGGTTT
22828 AGGGTTT
1 AGGGTTT
**
22835 AAAGTTT
1 AGGGTTT
22842 AGGGTTT
1 AGGGTTT
22849 CTATAAACTA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 5 0.13
7 34 0.87
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (7 bp):
AGGGTTT
Found at i:22822 original size:14 final size:14
Alignment explanation
Indices: 22803--22848 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
22793 AAGGGTTTAT
*
22803 GTTTAGGGTTTAGG
1 GTTTAGAGTTTAGG
22817 GTTTAGAGTTTAGG
1 GTTTAGAGTTTAGG
*
22831 GTTTAAAGTTTAGG
1 GTTTAGAGTTTAGG
22845 GTTT
1 GTTT
22849 CTATAAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.46
Consensus pattern (14 bp):
GTTTAGAGTTTAGG
Found at i:23282 original size:15 final size:15
Alignment explanation
Indices: 23262--23396 Score: 102
Period size: 15 Copynumber: 9.0 Consensus size: 15
23252 ATATACTTTC
*
23262 TATAGTTTATACATA
1 TATAGTTTATATATA
* *
23277 TATAGTTCACATATA
1 TATAGTTTATATATA
*
23292 TATAG-TT-TACATA
1 TATAGTTTATATATA
* *
23305 TATAGTTCATATAAA
1 TATAGTTTATATATA
*
23320 CATA-TTT-TATATA
1 TATAGTTTATATATA
*
23333 TATAATTTATAATAATTA
1 TATAGTTTAT-AT-A-TA
23351 TATAGTTTATAATATAAA
1 TATAGTTTAT-ATAT--A
23369 TATAG-TT-TATATA
1 TATAGTTTATATATA
23382 TATAGTTTATATATA
1 TATAGTTTATATATA
23397 AACTTATATT
Statistics
Matches: 95, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
13 23 0.24
14 9 0.09
15 35 0.37
16 4 0.04
17 4 0.04
18 20 0.21
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.47
Consensus pattern (15 bp):
TATAGTTTATATATA
Found at i:23303 original size:28 final size:28
Alignment explanation
Indices: 23262--23336 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
23252 ATATACTTTC
*
23262 TATAGTTTATACATATATAGTTCACATATA
1 TATAG-TT-TACATATATAGTTCACATAAA
*
23292 TATAGTTTACATATATAGTTCATATAAA
1 TATAGTTTACATATATAGTTCACATAAA
* * *
23320 CATATTTTATATATATA
1 TATAGTTTACATATATA
23337 ATTTATAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 33 0.82
29 2 0.05
30 5 0.12
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (28 bp):
TATAGTTTACATATATAGTTCACATAAA
Found at i:23371 original size:18 final size:18
Alignment explanation
Indices: 23327--23385 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
23317 AAACATATTT
*
23327 TATATATATAATTTATAA
1 TATATATATAGTTTATAA
23345 TA-ATTATATAGTTTATAA
1 TATA-TATATAGTTTATAA
*
23363 TATAAATATAGTTTAT-A
1 TATATATATAGTTTATAA
23380 TATATA
1 TATATA
23386 GTTTATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 7 0.19
18 28 0.78
19 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TATATATATAGTTTATAA
Found at i:23384 original size:13 final size:13
Alignment explanation
Indices: 23262--23396 Score: 82
Period size: 13 Copynumber: 10.2 Consensus size: 13
23252 ATATACTTTC
23262 TATAGTTTATACATA
1 TATAGTTTAT--ATA
*
23277 TATAGTTCACATATA
1 TATAGTT--TATATA
*
23292 TATAGTTTACATA
1 TATAGTTTATATA
*
23305 TATAGTTCATATAAA
1 TATAGTT--TATATA
* *
23320 CATATTTTATATA
1 TATAGTTTATATA
*
23333 TATAATTTATA-A
1 TATAGTTTATATA
23345 TA-A--TTATATA
1 TATAGTTTATATA
* * *
23355 GTTTA-TAATATAAA
1 -TATAGT-TTATATA
23369 TATAGTTTATATA
1 TATAGTTTATATA
23382 TATAGTTTATATA
1 TATAGTTTATATA
23395 TA
1 TA
23397 AACTTATATT
Statistics
Matches: 94, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
9 5 0.05
10 1 0.01
11 2 0.02
12 4 0.04
13 48 0.51
14 6 0.06
15 26 0.28
17 2 0.02
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.47
Consensus pattern (13 bp):
TATAGTTTATATA
Found at i:23415 original size:49 final size:48
Alignment explanation
Indices: 23313--23417 Score: 113
Period size: 49 Copynumber: 2.1 Consensus size: 48
23303 TATATAGTTC
* * **
23313 ATATAAACATATTTTATATATATAATTTATAATAATTATATAGTTTATA
1 ATATAAATATAGTTTATATATATAATTTATAATAATTATATA-TACATA
*
23362 ATATAAATATAGTTTATATATATAGTTTATATATAAACTTATAT-TACATA
1 ATATAAATATAGTTTATATATATAATTTATA-AT-AA-TTATATATACATA
23412 TATATA
1 -ATATA
23418 TATTATATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
49 28 0.60
50 6 0.13
51 7 0.15
52 6 0.13
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (48 bp):
ATATAAATATAGTTTATATATATAATTTATAATAATTATATATACATA
Found at i:23425 original size:13 final size:13
Alignment explanation
Indices: 23204--23426 Score: 60
Period size: 13 Copynumber: 16.8 Consensus size: 13
23194 ACTTTGAATA
23204 ATATATATA-TAT
1 ATATATATATTAT
23216 ATATACTATATTA-
1 ATATA-TATATTAT
23229 ATATA-A-ATTAT
1 ATATATATATTAT
* *
23240 AGTTTATAAAATATAT
1 A-TATAT-ATAT-TAT
* *
23256 ACTTTCTATAGTTTAT
1 A-TATATATA--TTAT
* *
23272 ACATATATAGTTCAC
1 ATATATATA-TT-AT
23287 ATATATATAGTT-T
1 ATATATATA-TTAT
*
23300 ACATATATAGTTCAT
1 ATATATATA-TT-AT
* * *
23315 ATAAACATATTTT
1 ATATATATATTAT
23328 ATATATATAATT-T
1 ATATATAT-ATTAT
23341 ATA-ATA-ATTAT
1 ATATATATATTAT
*
23352 ATAGT-T-TATAAT
1 ATA-TATATATTAT
*
23364 ATAAATATAGTT-T
1 ATATATATA-TTAT
23377 ATATATATAGTT-T
1 ATATATATA-TTAT
*
23390 ATATATAAACTTAT
1 ATATATATA-TTAT
*
23404 AT-TACATA-TAT
1 ATATATATATTAT
23415 ATATATTATATT
1 ATATA-TATATT
23427 TTTTTCAATT
Statistics
Matches: 159, Mismatches: 27, Indels: 48
0.68 0.12 0.21
Matches are distributed among these distances:
10 7 0.04
11 11 0.07
12 22 0.14
13 63 0.40
14 15 0.09
15 28 0.18
16 12 0.08
17 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.48
Consensus pattern (13 bp):
ATATATATATTAT
Found at i:30533 original size:300 final size:301
Alignment explanation
Indices: 30122--30685 Score: 941
Period size: 300 Copynumber: 1.9 Consensus size: 301
30112 AATAAAAGCA
* * *
30122 AACGAAATACGAATGAGGAAATGTTTACCTTTGAGGTTATTGTAACCAAGATACAAAGATTGGAG
1 AACGAAATACAAATGAGGAAATGTTAACCTTTGAAGTTATTGTAACCAAGATACAAAGATTGGAG
30187 CACAGTCAAATTTCCAATTTCTATAGGTATACTTCCTTCAATAGAGTTGTTCCATAAGGATAAAA
66 CACAGTCAAATTTCCAATTTCTATAGGTATACTTCCTTCAATAGAGTTGTTCCATAAGGATAAAA
30252 AAATCAACTCTTTGCACTTGAATAAACTATTAGGAATACTACCAGAAATTTGATTCCCAGCCAAA
131 AAATCAACTCTTTGCACTTGAATAAACTATTAGGAATACTACCAGAAATTTGATTCCCAGCCAAA
* *
30317 CTTAAAACTTGCAATTTAGACATGTTATCAAATATTCCCGACTCTAGATGGCCAGCAGTGAGATT
196 CTTAAAACTTGCAATTTAGACATGTTATCAAATATTCCCGACCCTAGATGGCCAGCAGTGAAATT
30382 GTTAATTATAAAACAACATTTATCTAATGAAAATAAAATAG
261 GTTAATTATAAAACAACATTTATCTAATGAAAATAAAATAG
* * *
30423 AACGAAATGCAAATGAGGAAAT-TTAACCTTTGAAGTTGTTGTAACCGAGATACAAAGATTGGAG
1 AACGAAATACAAATGAGGAAATGTTAACCTTTGAAGTTATTGTAACCAAGATACAAAGATTGGAG
* * * *
30487 CATAGTCAAATTTCCAATTTCTATAGGTATACTTCCTTCCATAGAGTTGTTCCATAATGATAAAT
66 CACAGTCAAATTTCCAATTTCTATAGGTATACTTCCTTCAATAGAGTTGTTCCATAAGGATAAAA
** * * *
30552 ACCTCAACTCTTTGCACTTGAATAAACTATTAGGAATGCTACCAGAAATTTGATTCCCAGTCAAG
131 AAATCAACTCTTTGCACTTGAATAAACTATTAGGAATACTACCAGAAATTTGATTCCCAGCCAAA
* * *
30617 CTTAATACTTGCAATTTAGACATGTTATCAAATATTTCCGACCCTAGATGGCCTGCAGTGAAATT
196 CTTAAAACTTGCAATTTAGACATGTTATCAAATATTCCCGACCCTAGATGGCCAGCAGTGAAATT
30682 GTTA
261 GTTA
30686 GTTACATATA
Statistics
Matches: 243, Mismatches: 20, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
300 223 0.92
301 20 0.08
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (301 bp):
AACGAAATACAAATGAGGAAATGTTAACCTTTGAAGTTATTGTAACCAAGATACAAAGATTGGAG
CACAGTCAAATTTCCAATTTCTATAGGTATACTTCCTTCAATAGAGTTGTTCCATAAGGATAAAA
AAATCAACTCTTTGCACTTGAATAAACTATTAGGAATACTACCAGAAATTTGATTCCCAGCCAAA
CTTAAAACTTGCAATTTAGACATGTTATCAAATATTCCCGACCCTAGATGGCCAGCAGTGAAATT
GTTAATTATAAAACAACATTTATCTAATGAAAATAAAATAG
Found at i:32640 original size:127 final size:128
Alignment explanation
Indices: 32478--32726 Score: 419
Period size: 128 Copynumber: 2.0 Consensus size: 128
32468 AGTCCTTACT
*
32478 AGTCGTAAAGTTTCCTACTCCACTCACAGATTGTATATTTG-AAAAAAAATCATACCCATAATTT
1 AGTCGTAAAGTTTCCTACTCCACTCACAGATTGTATATTTGAAAAAAAAACCATACCCATAATTT
*
32542 GAGCGAGGAATATGTAGAATTATTGTGGTCCATCCACAGTACACAGCTCAAAAGGAAGTCACA
66 GAGCGAGGAATATGTAGAATTACTGTGGTCCATCCACAGTACACAGCTCAAAAGGAAGTCACA
* * *
32605 AGTCTTAAAGTTTCCTACTCCACTCACAGATTGTATATTTGAAAAAAAAACCATTCCCGTAATTT
1 AGTCGTAAAGTTTCCTACTCCACTCACAGATTGTATATTTGAAAAAAAAACCATACCCATAATTT
* * *
32670 GAGGGAGGAATGTGTAGAATTACTGTGGTCCATCCACAGTAGACAGCTCAAAAGGAA
66 GAGCGAGGAATATGTAGAATTACTGTGGTCCATCCACAGTACACAGCTCAAAAGGAA
32727 AGACTTGAGT
Statistics
Matches: 113, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
127 40 0.35
128 73 0.65
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (128 bp):
AGTCGTAAAGTTTCCTACTCCACTCACAGATTGTATATTTGAAAAAAAAACCATACCCATAATTT
GAGCGAGGAATATGTAGAATTACTGTGGTCCATCCACAGTACACAGCTCAAAAGGAAGTCACA
Found at i:32951 original size:41 final size:41
Alignment explanation
Indices: 32889--32972 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
32879 AAATTAAAAA
*
32889 TAAATACAATAACCTTTAATTTAAAAGTTTTTATAATCCCG
1 TAAATACAATAACCTTCAATTTAAAAGTTTTTATAATCCCG
32930 TAAATACAATAACCTTCAATTTAAAAGTTTTTATAATCCCG
1 TAAATACAATAACCTTCAATTTAAAAGTTTTTATAATCCCG
32971 TA
1 TA
32973 GAACGCAGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (41 bp):
TAAATACAATAACCTTCAATTTAAAAGTTTTTATAATCCCG
Found at i:33301 original size:17 final size:18
Alignment explanation
Indices: 33279--33316 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
33269 AGTTTCATAT
33279 TAAATA-ATTACATATTA
1 TAAATAGATTACATATTA
33296 TAAATAGTATTACATATTA
1 TAAATAG-ATTACATATTA
33315 TA
1 TA
33317 TTAGATGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
19 13 0.68
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
TAAATAGATTACATATTA
Found at i:35930 original size:84 final size:84
Alignment explanation
Indices: 35787--36044 Score: 390
Period size: 84 Copynumber: 3.0 Consensus size: 84
35777 AGATTGTCAT
* * * *
35787 CAAATTTTTAACAAAAAATGACGAGTTTGAAACATATAAATAGTCATATGACCATTTTGTAATTT
1 CAAA-TTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAGATGACCATTTTGTAACTT
35852 TTAATAGTCGAGAGACTCAA
65 TTAATAGTCGAGAGACTCAA
* *
35872 TAAATTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAGACGACCATTTTGTAACTTT
1 CAAATTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAGATGACCATTTTGTAACTTT
35937 TAATAGTCGAGAGACTCAA
66 TAATAGTCGAGAGACTCAA
* *
35956 CAAATTTTAACGAAAAAGAAAGAGTTTGAAACATATAAATAGTCAGATGACCATTTTTGTAACTT
1 CAAATTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAGATGACCA-TTTTGTAACTT
* * * *
36021 TTAATATTCAAGGGACTAAA
65 TTAATAGTCGAGAGACTCAA
36041 CAAA
1 CAAA
36045 GCAACACACT
Statistics
Matches: 158, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
84 124 0.78
85 34 0.22
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.30
Consensus pattern (84 bp):
CAAATTTTAACGAAAAAGGACGAGTTTGAAACATATAAATAGTCAGATGACCATTTTGTAACTTT
TAATAGTCGAGAGACTCAA
Found at i:36073 original size:61 final size:61
Alignment explanation
Indices: 35994--36141 Score: 192
Period size: 60 Copynumber: 2.5 Consensus size: 61
35984 AAACATATAA
** *
35994 ATAGTCAGATGACCATTTTTGTAACTTTTAATATTCAAGGGACTAAACAAAGCAACACACT
1 ATAGTCAGGGGACCATTTTTGTAACTTTTAATAGTCAAGGGACTAAACAAAGCAACACACT
* * * * *
36055 ATAGTTAGGGGACCA-TTTTGTAACTTTTAATAGTCAAGTGACTCAACAAAGTAACACCCT
1 ATAGTCAGGGGACCATTTTTGTAACTTTTAATAGTCAAGGGACTAAACAAAGCAACACACT
* *
36115 ATAGTCGGGGGACCATTTGTGT-ACTTT
1 ATAGTCAGGGGACCATTTTTGTAACTTT
36142 ACTCTTAAGT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
60 58 0.77
61 17 0.23
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (61 bp):
ATAGTCAGGGGACCATTTTTGTAACTTTTAATAGTCAAGGGACTAAACAAAGCAACACACT
Found at i:36592 original size:4 final size:4
Alignment explanation
Indices: 36583--36618 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
36573 TCGGGTTTTA
36583 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
36619 TTGAAGTCGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:37423 original size:77 final size:79
Alignment explanation
Indices: 37339--37491 Score: 188
Period size: 78 Copynumber: 2.0 Consensus size: 79
37329 AATAAAATAG
* *
37339 TATTTAATTAATTC-AAATTAAATAT-ACATT-AAAGACTTATAGTCTGAATTACAATC-TTTAA
1 TATTTAATT-ATTCTAAATTAAATATCA-ATTAAAAGACTTATAATCTAAATTACAATCTTTTAA
*
37400 TGTTTATTTAAAAACT
64 TGTTTAATTAAAAACT
* * * * *
37416 TATTTAATTATTCTGAATTATATATCAATTAAAAGAGTTGTAATCTAAATTACATTCTTTTAATG
1 TATTTAATTATTCTAAATTAAATATCAATTAAAAGACTTATAATCTAAATTACAATCTTTTAATG
37481 TTTAATTAAAA
66 TTTAATTAAAA
37492 TCATTTGTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
76 4 0.06
77 21 0.33
78 22 0.34
79 17 0.27
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (79 bp):
TATTTAATTATTCTAAATTAAATATCAATTAAAAGACTTATAATCTAAATTACAATCTTTTAATG
TTTAATTAAAAACT
Found at i:42474 original size:49 final size:49
Alignment explanation
Indices: 42418--42516 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
42408 TTAAAGTAAG
42418 TAAATTTACCGAATTAAAATTTATAAATAGGTCTTTATTTACAAATTAC
1 TAAATTTACCGAATTAAAATTTATAAATAGGTCTTTATTTACAAATTAC
42467 TAAATTTACCGAATTAAAATTTATAAATAGGTCTTTATTTACAAATTAC
1 TAAATTTACCGAATTAAAATTTATAAATAGGTCTTTATTTACAAATTAC
42516 T
1 T
42517 CCCGCTATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.41
Consensus pattern (49 bp):
TAAATTTACCGAATTAAAATTTATAAATAGGTCTTTATTTACAAATTAC
Found at i:44341 original size:78 final size:80
Alignment explanation
Indices: 44236--44390 Score: 210
Period size: 78 Copynumber: 2.0 Consensus size: 80
44226 AAATAATAAA
*
44236 TAAAATATTATTTAATTAATTCAAATTAAATAT-ACATT-AAAGACTTATAATCTGAATTACAAT
1 TAAAATATTATTTAATTAATTCAAATTAAATATCA-ATTAAAAGACTTATAATCTAAATTACAAT
44299 C-TTTAATGTTTATTT
65 CTTTTAATGTTTATTT
* * * * *
44314 TAAAATGTTATTTAATT-ATTCCGAATTATATATCAATTAAAAGAGTTATAATCTAAATTACATT
1 TAAAATATTATTTAATTAATT-CAAATTAAATATCAATTAAAAGACTTATAATCTAAATTACAAT
44378 CTTTTAATGTTTA
65 CTTTTAATGTTTA
44391 CTTACTATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
77 3 0.04
78 29 0.43
79 24 0.36
80 11 0.16
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (80 bp):
TAAAATATTATTTAATTAATTCAAATTAAATATCAATTAAAAGACTTATAATCTAAATTACAATC
TTTTAATGTTTATTT
Found at i:45641 original size:2 final size:2
Alignment explanation
Indices: 45634--45673 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
45624 TAATCAATAC
45634 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45674 CAAACAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:46638 original size:3 final size:3
Alignment explanation
Indices: 46575--46618 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
46565 CCATATATCC
* *
46575 TTA TTA -TA TTA TTA TTA TTA TTA ATA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
46619 AATAATAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:46692 original size:23 final size:23
Alignment explanation
Indices: 46665--46743 Score: 131
Period size: 23 Copynumber: 3.4 Consensus size: 23
46655 AAGTTAACAT
*
46665 GGAAGCCCAATACACCTAAACCC
1 GGAAGCCCAATACACCCAAACCC
* *
46688 AGAAGCCTAATACACCCAAACCC
1 GGAAGCCCAATACACCCAAACCC
46711 GGAAGCCCAATACACCCAAACCC
1 GGAAGCCCAATACACCCAAACCC
46734 GGAAGCCCAA
1 GGAAGCCCAA
46744 CAGGAACCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.41, C:0.39, G:0.14, T:0.06
Consensus pattern (23 bp):
GGAAGCCCAATACACCCAAACCC
Found at i:47216 original size:16 final size:16
Alignment explanation
Indices: 47195--47234 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
47185 AAAAAAAGAA
* *
47195 GAAGAAGAGACGATGG
1 GAAGAAAAGACGACGG
47211 GAAGAAAAGACGACGG
1 GAAGAAAAGACGACGG
47227 GAAGAAAA
1 GAAGAAAA
47235 AATGGGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.07, G:0.38, T:0.03
Consensus pattern (16 bp):
GAAGAAAAGACGACGG
Found at i:49862 original size:3 final size:3
Alignment explanation
Indices: 49846--49903 Score: 71
Period size: 3 Copynumber: 18.7 Consensus size: 3
49836 TAACAACATA
* * *
49846 AAT AAC AAT AAAT AAT AAT AAT AAT ATT AAAT AAT AAT AAT ATT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
49893 AAT AAT AAT AA
1 AAT AAT AAT AA
49904 CCCAAACAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
3 42 0.89
4 5 0.11
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:50534 original size:239 final size:238
Alignment explanation
Indices: 50048--50813 Score: 978
Period size: 236 Copynumber: 3.2 Consensus size: 238
50038 CTCGAATGAC
* * *
50048 TTAATCATCATGCTCAAAAGACTTACTAATTGCCCGAAGGATTTTCCAATTTTTGGGAAATAGTT
1 TTAATCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTACCAATTTTT--GAAATAGTT
* * * * *
50113 TACTTGGTAAGAAACTTTGGAAATCGCTTTCTTCCTTTTAAAAAATTTCATTTTCTGAAAATATT
64 TACTAGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAGATTTCATTTTCTGAAAATATT
* * * * * * * *
50178 AAATGAAAAACTTTGAAAATTGCTTTTCTCATTTTTCTCAAACATCGTATGAAAGCATCTCATAG
129 AATTGAGAAACTTTGGAAATTGC-TTTCTCATTTTT-T-AAAAATCATGTGAAA--ATATCCT--
* *
50243 ATGGCCCGAAGGACTTATCATCTTGCTCGGAAGACTGACAGATGACCCGAAGGAT
187 A---CCCGAATGACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGAT
* * * * *
50298 TTAATTATCATGCTCAAAAGACTTACTGATGGCTCGAAGGACTTACAAATTTTTGAAAAAGTTTA
1 TTAATCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTACCAATTTTTGAAATAGTTTA
* ** *
50363 CTAGGTAAAAAACTTTGGAAATTTCTTTCTTACTTTTTCAAAGATTTCATTTTCTGAAAATATTT
66 CTAGGTAAGAAACTTTGGAAATCACTTTCTTAC-TTTTCAAAGATTTCATTTTCTGAAAATATTA
*
50428 ATTGAGAAATTTTGGAAATTGCTTTCTCATTTTTTAAAAATCATGTGAAAATATCCTACCCGAAT
130 ATTGAGAAACTTTGGAAATTGCTTTCTCATTTTTTAAAAATCATGTGAAAATATCCTACCCGAAT
* *
50493 GACTTATCATATTTCTCGAAAGACTGACAGATGACCCGAAGGAT
195 GACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGAT
* ** * * *
50537 TTAATCATCATGATTGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTTGGAAATAGTTTA
1 TTAATCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTACCAATTTTTGAAATAGTTTA
* *
50602 CTAGGTAAGAAACTTTGGAAATCAATTTCTTACTTTTCAAAGATTTTA-TTT-TGAAAATATTAA
66 CTAGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAGATTTCATTTTCTGAAAATATTAA
* * * * * * *
50665 TTGAGAAACTTTGGAAATCGTTTTCTCATTTTTCATAAATCATGCGAAAACATCCTGCCCGAATG
131 TTGAGAAACTTTGGAAATTGCTTTCTCATTTTTTAAAAATCATGTGAAAATATCCTACCCGAATG
50730 ACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGAT
196 ACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGAT
**
50773 TTAATCATCATGCTTGAAAGACTTACTAATGGCCCGAAGGA
1 TTAATCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGA
50814 AATACTAAGT
Statistics
Matches: 458, Mismatches: 57, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
236 147 0.32
237 3 0.01
238 14 0.03
239 132 0.29
242 1 0.00
244 5 0.01
246 12 0.03
247 1 0.00
248 50 0.11
249 46 0.10
250 47 0.10
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (238 bp):
TTAATCATCATGCTCAAAAGACTTACTAATGGCCCGAAGGACTTACCAATTTTTGAAATAGTTTA
CTAGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAGATTTCATTTTCTGAAAATATTAA
TTGAGAAACTTTGGAAATTGCTTTCTCATTTTTTAAAAATCATGTGAAAATATCCTACCCGAATG
ACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGAT
Found at i:50781 original size:42 final size:42
Alignment explanation
Indices: 50734--50813 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
50724 CGAATGACTT
*
50734 ATCATCTTGCTCGAAAGACTGAC-AGATGACCCGAAGGATTTA
1 ATCATCATGCTCGAAAGACTGACTA-ATGACCCGAAGGATTTA
* * *
50776 ATCATCATGCTTGAAAGACTTACTAATGGCCCGAAGGA
1 ATCATCATGCTCGAAAGACTGACTAATGACCCGAAGGA
50814 AATACTAAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 32 0.97
43 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (42 bp):
ATCATCATGCTCGAAAGACTGACTAATGACCCGAAGGATTTA
Found at i:51008 original size:41 final size:42
Alignment explanation
Indices: 50948--51033 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 42
50938 ACCCGAAGGT
* * * *
50948 CTTACGGATGGCCCGAAGGACTT-ATCATC-TTGTTCGAAAGA
1 CTTACAGATGACCCAAAGGACTTAATCATCATT-CTCGAAAGA
*
50989 CTTACAGATGACCCAAAGGATTTAATCATCATTCTCGAAAGA
1 CTTACAGATGACCCAAAGGACTTAATCATCATTCTCGAAAGA
51031 CTT
1 CTT
51034 GCTGATGGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 19 0.50
42 17 0.45
43 2 0.05
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (42 bp):
CTTACAGATGACCCAAAGGACTTAATCATCATTCTCGAAAGA
Found at i:51020 original size:237 final size:237
Alignment explanation
Indices: 50721--51869 Score: 1683
Period size: 237 Copynumber: 4.8 Consensus size: 237
50711 AAAACATCCT
* * *
50721 GCCCGAATGACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGATTTAATCATCATGC
1 GCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGC
* * * * **
50786 TTGAAAGACTTACTAATGGCCCGAAGGAAATACTAAGTAAGAAACTTTGGAAATTGTTTTCTTAC
66 TCGAAAGACTTGCTGATGGCCCGAAGGAATTACTAAGTAAGAAACTTTGGAAATCATTTTCTTAC
*
50851 TTTTCAAAAATTTCATTTTCATAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTT
131 TTTTCAAAAATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTT
50916 CAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACGGATG
196 CAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACGGATG
* *
50958 GCCCGAAGGACTTATCATCTTGTTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATTC
1 GCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGC
*
51023 TCGAAAGACTTGCTGATGGCCCGAA-GAACTTACTAAGTACGAAACTTTGGAAATCATTTTCTTA
66 TCGAAAGACTTGCTGATGGCCCGAAGGAA-TTACTAAGTAAGAAACTTTGGAAATCATTTTCTTA
51087 CTTTTCAAAAATTTTC-TTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTT
130 CTTTTCAAAAA-TTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTT
*
51151 TTCAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACAGATG
194 TTCAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACGGATG
* * * * * *
51195 GCCTGAAGGACTTATCATCTTACTCGAAAGACTTACAAATAACCCAAAGGATTTAATCATTATTC
1 GCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGC
* * *
51260 TCGAAAAACTTGCTGATGGCCCGAA-GAACTTACTAAGTATGAAACTTTGGAAATAATTTTCTTA
66 TCGAAAGACTTGCTGATGGCCCGAAGGAA-TTACTAAGTAAGAAACTTTGGAAATCATTTTCTTA
* ** * *
51324 CTTTTCAAAAATTTTATTGCCAGAAAAGACTAAATGGGAAACTTTGAAAATTGCTTTCCCATTTT
130 CTTTTCAAAAATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCA-TTT
* *
51389 TTCAAATTCATGTGAAAACATCCTACTCGAAGGTCTTACGGATG
194 TTCAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACGGATG
* * *** *
51433 GCCCAAAGGACTTATCATCTTGCTCGAAAGAGTTACAGATGACCTGGATGATTTAATCATCATGC
1 GCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGC
* * * * *
51498 TCCAAAGAGTTACTGATGGCCCGAAGGACTTACTAAGGAAGAAACTTTGGAAATCATTTTCTTAC
66 TCGAAAGACTTGCTGATGGCCCGAAGGAATTACTAAGTAAGAAACTTTGGAAATCATTTTCTTAC
* *
51563 TTCTCGAAAATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTT
131 TTTTCAAAAATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTT
* * * *
51628 CAAATTCATGTGAAAACACCTTACCCAAAGGTATTACGGATA
196 CAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACGGATG
* * * * *
51670 GCCCAAATGACTTATCATTTTGCTCAAAAGACTTATAGATGACCCAAAGGATTTAATCATCATGC
1 GCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGC
* * *
51735 TCGAAAGACTTGCTGATGGCCCGAAGGACTTACTAAATAAGAAATTTTGGAAATCATTTTCTTAC
66 TCGAAAGACTTGCTGATGGCCCGAAGGAATTACTAAGTAAGAAACTTTGGAAATCATTTTCTTAC
* * * * * *
51800 TTTTTAAAAATTTCATTTTCAGAAAAAATTTAAATGAGAAACTTTGGAAATTGCTTTCTCATTTT
131 TTTTCAAAAATTTCATTTTCAGAAAAGA-TTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTT
51865 TCAAA
195 TCAAA
51870 ATAACTTAAT
Statistics
Matches: 819, Mismatches: 87, Indels: 11
0.89 0.09 0.01
Matches are distributed among these distances:
236 6 0.01
237 566 0.69
238 245 0.30
239 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (237 bp):
GCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGC
TCGAAAGACTTGCTGATGGCCCGAAGGAATTACTAAGTAAGAAACTTTGGAAATCATTTTCTTAC
TTTTCAAAAATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTT
CAAATTCATGTGAAAACACCCTACCCGAAGGTCTTACGGATG
Found at i:51618 original size:475 final size:474
Alignment explanation
Indices: 50729--51869 Score: 1701
Period size: 475 Copynumber: 2.4 Consensus size: 474
50719 CTGCCCGAAT
* * *
50729 GACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAGGATTTAATCATCATGCTTGAAAGA
1 GACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGA
* * * **
50794 CTTACTAATGGCCCGAAGGAA-ATACTAAGTAAGAAACTTTGGAAATTGTTTTCTTACTTTTCAA
66 CTTGCTGATGGCCCGAA-GAACTTACTAAGTAAGAAACTTTGGAAATAATTTTCTTACTTTTCAA
* *
50858 AAATTTCATTTTCATAAAAGATTAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTTCAAATTC
130 AAATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATTGCTTTCCCATTTTTCAAATTC
* *
50923 ATGTGAAAACACCCTACCCGAAGGTCTTACGGATGGCCCGAAGGACTTATCATCTTGTTCGAAAG
195 ATGTGAAAACACCCTACCCGAAGGTCTTACGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAG
* * *
50988 ACTTACAGATGACCCAAAGGATTTAATCATCATTCTCGAAAGACTTGCTGATGGCCCGAAGAACT
260 ACTTACAGATGACCCAAAGGATTTAATCATCATGCTCCAAAGACTTACTGATGGCCCGAAGAACT
* * *
51053 TACTAAGTACGAAACTTTGGAAATCATTTTCTTACTTTTCAAAAATTTTCTTTTCAGAAAAGATT
325 TACTAAGGAAGAAACTTTGGAAATCATTTTCTTACTTCTCAAAAATTTTCTTTTCAGAAAAGATT
*
51118 AAATGGGAAACTTTGAAAATCGCTTTCCCATTTTTCAAATTCATGTGAAAACACCCTACCCGAAG
390 AAATGGGAAACTTTGAAAATCGCTTTCCCATTTTTCAAATTCATGTGAAAACACCCTACCCAAAG
* * **
51183 GTCTTACAGATGGCCTGAAG
455 GTATTACAGATAGCCCAAAG
* * * * * *
51203 GACTTATCATCTTACTCGAAAGACTTACAAATAACCCAAAGGATTTAATCATTATTCTCGAAAAA
1 GACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGA
*
51268 CTTGCTGATGGCCCGAAGAACTTACTAAGTATGAAACTTTGGAAATAATTTTCTTACTTTTCAAA
66 CTTGCTGATGGCCCGAAGAACTTACTAAGTAAGAAACTTTGGAAATAATTTTCTTACTTTTCAAA
* ** *
51333 AATTTTATTGCCAGAAAAGACTAAATGGGAAACTTTGAAAATTGCTTTCCCATTTTTTCAAATTC
131 AATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATTGCTTTCCCA-TTTTTCAAATTC
* *
51398 ATGTGAAAACATCCTACTCGAAGGTCTTACGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAG
195 ATGTGAAAACACCCTACCCGAAGGTCTTACGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAG
* *** * * *
51463 AGTTACAGATGACCTGGATGATTTAATCATCATGCTCCAAAGAGTTACTGATGGCCCGAAGGACT
260 ACTTACAGATGACCCAAAGGATTTAATCATCATGCTCCAAAGACTTACTGATGGCCCGAAGAACT
*
51528 TACTAAGGAAGAAACTTTGGAAATCATTTTCTTACTTCTCGAAAA-TTTCATTTTCAGAAAAGAT
325 TACTAAGGAAGAAACTTTGGAAATCATTTTCTTACTTCTCAAAAATTTTC-TTTTCAGAAAAGAT
*
51592 TAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTTCAAATTCATGTGAAAACACCTTACCCAAA
389 TAAATGGGAAACTTTGAAAATCGCTTTCCCATTTTTCAAATTCATGTGAAAACACCCTACCCAAA
* *
51657 GGTATTACGGATAGCCCAAAT
454 GGTATTACAGATAGCCCAAAG
* * *
51678 GACTTATCATTTTGCTCAAAAGACTTATAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGA
1 GACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGA
* * * * *
51743 CTTGCTGATGGCCCGAAGGACTTACTAAATAAGAAATTTTGGAAATCATTTTCTTACTTTTTAAA
66 CTTGCTGATGGCCCGAAGAACTTACTAAGTAAGAAACTTTGGAAATAATTTTCTTACTTTTCAAA
* * * *
51808 AATTTCATTTTCAGAAAAAATTTAAATGAGAAACTTTGGAAATTGCTTTCTCATTTTTCAAA
131 AATTTCATTTTCAGAAAAGA-TTAAATGGGAAACTTTGAAAATTGCTTTCCCATTTTTCAAA
51870 ATAACTTAAT
Statistics
Matches: 593, Mismatches: 70, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
473 3 0.01
474 161 0.27
475 401 0.68
476 28 0.05
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (474 bp):
GACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGA
CTTGCTGATGGCCCGAAGAACTTACTAAGTAAGAAACTTTGGAAATAATTTTCTTACTTTTCAAA
AATTTCATTTTCAGAAAAGATTAAATGGGAAACTTTGAAAATTGCTTTCCCATTTTTCAAATTCA
TGTGAAAACACCCTACCCGAAGGTCTTACGGATGGCCCAAAGGACTTATCATCTTGCTCGAAAGA
CTTACAGATGACCCAAAGGATTTAATCATCATGCTCCAAAGACTTACTGATGGCCCGAAGAACTT
ACTAAGGAAGAAACTTTGGAAATCATTTTCTTACTTCTCAAAAATTTTCTTTTCAGAAAAGATTA
AATGGGAAACTTTGAAAATCGCTTTCCCATTTTTCAAATTCATGTGAAAACACCCTACCCAAAGG
TATTACAGATAGCCCAAAG
Found at i:56362 original size:19 final size:19
Alignment explanation
Indices: 56326--56383 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 19
56316 AAGTCAACCC
* * *
56326 GACCTGACCCATTAACTTT
1 GACCCGACCCGTTGACTTT
* *
56345 TACTCGACCCGTTGACTTT
1 GACCCGACCCGTTGACTTT
*
56364 GACCCGACTCGTTGACTTT
1 GACCCGACCCGTTGACTTT
56383 G
1 G
56384 GCAATAGTTG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (19 bp):
GACCCGACCCGTTGACTTT
Found at i:61242 original size:18 final size:19
Alignment explanation
Indices: 61219--61280 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
61209 TGACCCGTTC
*
61219 ACTTTGACCCGA-CCATTG
1 ACTTTGACCCAACCCATTG
* *
61237 ACTTTGACTCAACCCAATG
1 ACTTTGACCCAACCCATTG
*
61256 ACTTTAACCCAACCCATTG
1 ACTTTGACCCAACCCATTG
61275 ACTTTG
1 ACTTTG
61281 GCTATAGTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
18 10 0.28
19 26 0.72
ACGTcount: A:0.27, C:0.32, G:0.11, T:0.29
Consensus pattern (19 bp):
ACTTTGACCCAACCCATTG
Found at i:61854 original size:27 final size:29
Alignment explanation
Indices: 61823--61881 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
61813 ACTACAGAAT
*
61823 TACCCCTGA-AGTGTAAGATAACCAAAA-
1 TACCCCTGAGAGTGTAAAATAACCAAAAG
* *
61850 TA-CCCTTAGAGTGTAAAATGACCAAAAG
1 TACCCCTGAGAGTGTAAAATAACCAAAAG
61878 TACC
1 TACC
61882 TCCAAGCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 5 0.19
27 18 0.69
28 2 0.08
29 1 0.04
ACGTcount: A:0.42, C:0.22, G:0.15, T:0.20
Consensus pattern (29 bp):
TACCCCTGAGAGTGTAAAATAACCAAAAG
Found at i:65828 original size:22 final size:22
Alignment explanation
Indices: 65800--65845 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
65790 TTTGGATGGT
*
65800 TTTGGCTAAATATTGATTGTAA
1 TTTGGCTAAATATTGATTGCAA
65822 TTTGGCTAAATATTGATTGCAA
1 TTTGGCTAAATATTGATTGCAA
65844 TT
1 TT
65846 GGTTAATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (22 bp):
TTTGGCTAAATATTGATTGCAA
Found at i:66661 original size:27 final size:27
Alignment explanation
Indices: 66645--66703 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
66635 ATTATAGAAT
*
66645 TACCCTTGAAGTGTAAAATGACCAAAA
1 TACCCTTCAAGTGTAAAATGACCAAAA
*
66672 TACCCTTCAAGTGTAAAATGACCCAAAG
1 TACCCTTCAAGTGTAAAATGA-CCAAAA
66700 TACC
1 TACC
66704 TCTAAGCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.22
Consensus pattern (27 bp):
TACCCTTCAAGTGTAAAATGACCAAAA
Found at i:67848 original size:137 final size:137
Alignment explanation
Indices: 67632--67905 Score: 512
Period size: 137 Copynumber: 2.0 Consensus size: 137
67622 AAGTTTTATA
*
67632 GTACCTTACCTGATAAATACCAAGTATCTTTGAAGAATAACTGGATCCTTTAGTGTGTTCCTTAT
1 GTACCCTACCTGATAAATACCAAGTATCTTTGAAGAATAACTGGATCCTTTAGTGTGTTCCTTAT
*
67697 GTGACATGTATATGTTTTACCTGTTTTAAAGCGTGATTTTCCAAAATTACAGATTTACTAATGTT
66 GTGACATGTATATGTTTTACCTGTTTTAAAGCATGATTTTCCAAAATTACAGATTTACTAATGTT
67762 TTGATTT
131 TTGATTT
67769 GTACCCTACCTGATAAATACCAAGTATCTTTGAAGAATAACTGGATCCTTTAGTGTGTTCCTTAT
1 GTACCCTACCTGATAAATACCAAGTATCTTTGAAGAATAACTGGATCCTTTAGTGTGTTCCTTAT
* *
67834 GTGACGTGTATATGTTTTACCTGTTTTAAAGCATGATTTTCCAAAATTACAGATTTACTGATGTT
66 GTGACATGTATATGTTTTACCTGTTTTAAAGCATGATTTTCCAAAATTACAGATTTACTAATGTT
67899 TTGATTT
131 TTGATTT
67906 ACTTTTAAAT
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 133 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (137 bp):
GTACCCTACCTGATAAATACCAAGTATCTTTGAAGAATAACTGGATCCTTTAGTGTGTTCCTTAT
GTGACATGTATATGTTTTACCTGTTTTAAAGCATGATTTTCCAAAATTACAGATTTACTAATGTT
TTGATTT
Done.