genome.fa.s1917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001917.1 Hibiscus syriacus cultivar Beakdansim tig00003880_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81670

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2200--2224	13	1.9	13	100	0	50	20	0	8	72	1.10
8381--8420	2	20.0	2	100	0	80	50	0	0	50	1.00
11382--11497	49	2.5	45	80	11	144	38	6	22	31	1.81
13584--13693	2	57.5	2	79	12	124	50	0	0	48	1.07
13877--13919	12	3.6	12	87	0	59	9	53	0	37	1.33
15643--15671	11	2.7	11	94	5	51	44	0	0	55	0.99
16465--16509	20	2.3	20	80	3	56	46	4	2	46	1.35
22359--22584	57	4.0	57	89	0	344	35	30	20	14	1.92
22662--22752	24	3.8	24	85	5	130	39	20	15	24	1.91
27074--27131	20	2.8	22	76	12	77	27	17	13	41	1.87
33220--33531	54	5.8	54	95	0	525	29	17	20	32	1.96
33254--33339	27	3.2	27	64	23	72	30	17	19	32	1.95
33443--33528	27	3.2	27	64	23	72	31	18	19	30	1.96
33882--34080	94	2.1	95	84	0	256	26	22	12	38	1.90
35184--35227	22	2.0	22	86	0	61	27	11	25	36	1.90
35672--35712	16	2.4	18	80	19	61	41	0	4	53	1.22
37011--37123	60	1.9	60	89	7	176	36	14	13	36	1.85
38660--38715	8	6.7	9	80	15	50	37	0	0	62	0.95
38661--38715	3	18.7	3	75	17	53	36	0	0	63	0.95
38712--38750	16	2.4	16	82	0	51	46	35	2	15	1.60
39953--40000	6	7.8	6	77	13	53	12	0	8	79	0.94
39951--40007	24	2.3	24	96	3	105	14	0	7	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39953--39998	13	3.7	13	80	11	60	13	0	8	78	0.97
40216--40244	12	2.3	13	94	5	51	41	0	13	44	1.44
47911--47951	18	2.2	18	86	4	55	82	9	7	0	0.83
50003--50161	71	2.2	70	84	6	212	30	11	25	32	1.91
50204--50321	42	2.8	41	78	3	121	26	22	21	30	1.98
50461--50576	42	2.8	41	81	6	135	26	21	23	28	1.99
50122--50662	264	2.1	263	89	1	814	28	19	21	30	1.97
50865--50903	17	2.3	17	95	0	69	35	20	15	28	1.93
51027--51081	3	18.7	3	75	17	53	36	1	0	61	1.06
51030--51074	23	1.9	24	86	4	65	35	2	0	62	1.08
51035--51081	18	2.7	18	86	3	69	36	2	0	61	1.08
52286--52339	16	3.4	16	82	9	58	20	1	0	77	0.86
52304--52339	15	2.3	16	90	4	56	19	0	0	80	0.71
53838--53873	18	1.9	19	88	5	56	36	5	5	52	1.48
58511--58568	26	2.2	26	84	0	71	46	15	8	29	1.75
62324--62388	30	2.2	30	100	0	130	33	6	26	33	1.81
62509--62566	28	2.1	28	96	0	107	31	31	15	22	1.95
67188--67245	28	2.1	28	93	0	98	31	25	17	25	1.97
77578--77665	44	2.0	42	85	8	115	64	2	12	20	1.37
77578--77673	41	2.3	43	83	8	117	62	2	11	23	1.39
77677--77742	23	2.8	23	70	20	55	72	0	9	18	1.10
77683--77742	25	2.5	23	71	15	59	73	0	8	18	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79052--79092	19	2.0	21	86	9	59	65	0	0	34	0.93
79132--79274	75	1.9	75	83	9	184	43	9	4	41	1.59
79118--79454	36	8.9	37	73	14	183	43	9	4	43	1.56
80046--80290	84	2.9	83	87	4	339	26	18	20	35	1.95

Tables:   1

The End!