genome.fa.s1918.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001918.1 Hibiscus syriacus cultivar Beakdansim tig00003881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57243

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125--159	18	2.0	18	94	5	63	22	22	22	31	1.98
5015--5046	13	2.4	14	94	5	57	59	3	0	37	1.13
5233--5309	23	3.4	22	78	8	82	36	20	22	20	1.95
5390--5428	20	2.0	20	84	0	51	38	17	17	25	1.92
6015--6084	36	1.9	36	91	5	115	22	22	17	37	1.94
8385--8411	14	1.9	14	100	0	54	18	0	0	81	0.69
8383--8431	26	1.9	25	84	12	64	18	2	2	77	0.96
8316--8631	122	2.6	123	88	5	469	22	18	14	44	1.86
8504--8544	9	4.8	8	85	14	55	17	0	0	82	0.66
8504--8537	13	2.6	13	90	0	59	17	0	0	82	0.67
8316--8667	124	2.8	119	84	7	418	23	18	13	45	1.83
8632--8797	74	2.2	75	88	4	246	27	15	3	54	1.56
8668--8755	40	2.1	42	85	4	126	30	15	2	51	1.56
10509--10542	2	17.0	2	100	0	68	50	0	0	50	1.00
10656--10683	2	14.0	2	100	0	56	50	0	0	50	1.00
11784--11815	15	2.1	16	94	5	57	18	12	46	21	1.82
13001--13102	42	2.4	42	80	3	107	33	21	22	22	1.97
13026--13107	42	2.0	42	87	0	119	34	20	21	23	1.97
12453--13638	263	4.5	263	89	2	1690	31	19	17	30	1.95
13552--13633	42	2.0	42	85	4	112	32	19	19	28	1.96
17124--17181	29	2.0	29	100	0	116	27	20	20	31	1.98
18838--18883	22	2.1	22	84	11	60	36	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23833--24000	85	2.0	85	81	4	196	31	20	18	29	1.96
24018--24046	2	14.5	2	100	0	58	48	0	0	51	1.00
32748--32826	5	14.8	5	76	17	70	7	22	50	18	1.72
32741--32826	22	4.0	22	96	3	165	9	23	48	18	1.76
32753--32826	21	3.8	18	89	10	78	8	22	50	18	1.74
32741--32826	43	2.0	44	97	2	165	9	23	48	18	1.76
32829--32920	9	9.7	9	77	13	78	29	28	26	16	1.97
32828--32921	19	4.9	19	77	16	86	28	27	26	17	1.97
32837--32918	29	2.9	28	87	7	103	30	28	25	15	1.96
39715--39793	5	14.8	5	75	17	70	7	22	50	18	1.72
39709--39793	22	3.9	22	98	1	163	9	23	48	18	1.77
39796--39887	9	9.7	9	77	11	85	29	28	26	16	1.97
39795--39888	19	4.9	19	79	11	93	28	27	26	17	1.97
39796--39887	28	3.2	28	81	9	105	29	28	26	16	1.97
43872--43977	55	1.9	55	88	0	158	41	11	25	21	1.86
48600--48686	10	8.9	10	69	18	58	78	0	17	4	0.92
48603--48683	18	4.3	18	79	16	60	77	0	17	4	0.93
48612--48684	19	3.8	19	76	18	80	79	0	15	5	0.90
48612--48684	20	3.8	20	82	7	98	79	0	15	5	0.90
48612--48684	18	3.8	19	82	13	96	79	0	15	5	0.90
48600--48685	20	4.4	19	81	14	95	77	0	17	4	0.93
53244--53284	18	2.3	18	82	0	55	0	7	12	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55713--55837	37	3.4	37	88	1	187	36	23	18	21	1.95
55957--56039	42	2.0	42	87	0	121	27	22	19	30	1.98
56520--57216	53	13.2	54	80	7	702	34	18	24	21	1.96

Tables:   1

The End!