genome.fa.s1920.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001920.1 Hibiscus syriacus cultivar Beakdansim tig00003883_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51529

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641--677	19	1.9	19	100	0	74	75	0	2	21	0.92
1554--1601	16	2.9	17	75	6	53	41	0	2	56	1.11
4236--4272	7	5.3	7	86	0	56	27	27	16	29	1.97
4229--4272	21	2.1	21	91	0	70	27	27	15	29	1.96
5090--5273	27	7.6	26	65	24	107	20	21	11	45	1.83
5067--5327	47	5.6	47	89	0	360	21	21	12	44	1.85
5347--5476	45	2.9	45	97	0	242	25	23	10	41	1.85
7272--7312	21	1.9	22	90	5	66	31	24	17	26	1.97
12275--12326	22	2.3	23	86	6	79	34	21	19	25	1.96
12989--13058	36	1.9	36	85	5	97	27	24	14	34	1.94
17594--17656	27	2.3	27	88	0	99	17	23	9	49	1.76
17621--17964	47	7.3	47	88	0	510	20	22	13	44	1.85
17834--18078	114	2.1	114	93	0	418	20	23	12	43	1.85
17787--18109	161	2.0	162	92	1	533	20	22	13	43	1.86
17881--18031	67	2.3	67	94	2	259	20	23	12	43	1.86
17948--18202	47	5.5	47	86	3	272	25	22	10	41	1.86
17621--17981	140	2.6	136	85	5	424	20	22	13	44	1.85
17947--18340	45	9.0	44	83	9	322	25	22	10	41	1.86
18192--18302	36	3.1	36	100	0	222	27	23	10	38	1.88
18841--18893	20	2.6	21	82	5	65	24	28	15	32	1.95
19810--19858	14	3.7	13	76	13	55	57	0	4	38	1.18
19800--19888	22	3.9	22	81	13	99	58	1	3	37	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19801--19866	26	2.5	26	87	2	96	60	0	3	36	1.12
19806--19897	26	3.7	24	77	14	89	58	1	4	35	1.25
23079--23120	18	2.3	19	84	8	52	19	7	0	73	1.05
26966--27016	7	7.0	7	79	16	59	84	0	13	1	0.71
26966--27016	15	3.5	15	86	5	77	84	0	13	1	0.71
26954--27021	24	2.8	25	82	14	88	80	0	16	2	0.82
26954--27021	18	4.0	17	74	18	61	80	0	16	2	0.82
26966--27021	29	2.0	27	89	6	85	83	0	14	1	0.72
27635--27698	28	2.3	28	83	0	92	40	35	3	20	1.68
28857--29013	52	2.9	55	84	11	232	29	10	20	40	1.85
28932--29114	97	1.9	96	88	3	278	27	9	19	43	1.81
29068--29272	58	3.6	57	70	11	161	31	12	18	38	1.88
29028--29263	111	2.1	111	88	1	339	30	10	18	41	1.84
29650--29675	2	13.0	2	100	0	52	50	0	0	50	1.00
29934--30474	91	5.9	91	85	3	687	36	14	23	25	1.93
30447--30620	76	2.3	76	84	7	210	34	15	18	31	1.93
32151--32180	15	2.1	14	93	6	51	50	0	3	46	1.18
39663--39690	14	2.0	14	100	0	56	35	21	14	28	1.92
48996--49305	45	6.6	46	77	12	188	27	21	10	40	1.86
49101--49184	27	2.9	30	84	15	122	25	20	7	47	1.75
49162--49305	45	3.2	44	91	4	227	27	20	9	43	1.83
49359--49414	17	3.2	17	74	18	51	57	14	3	25	1.53

Tables:   1

The End!