genome.fa.s1921.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001921.1 Hibiscus syriacus cultivar Beakdansim tig00003885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71608

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1606--1649	17	2.5	17	85	7	52	45	2	0	52	1.13
1740--1789	22	2.3	20	81	18	57	62	0	2	36	1.07
1749--1791	21	2.0	23	90	9	72	60	0	2	37	1.10
1869--1913	18	2.5	18	85	7	56	53	0	2	44	1.13
1878--1924	23	2.1	22	88	4	67	57	0	0	42	0.98
2857--2905	23	2.2	23	85	10	66	32	2	0	65	1.04
2868--2913	23	2.0	23	86	0	65	36	2	0	60	1.09
3844--3891	21	2.4	21	80	10	57	29	14	20	35	1.93
5724--5774	20	2.6	19	87	6	66	37	13	29	19	1.90
5801--5871	19	3.5	19	80	16	81	30	16	25	26	1.97
5801--5871	22	3.5	19	83	12	88	30	16	25	26	1.97
5859--5977	53	2.2	53	96	0	220	33	16	25	24	1.96
6348--6679	54	6.1	54	88	0	484	27	19	20	32	1.97
6362--6738	162	2.3	162	84	0	459	28	19	20	31	1.97
12731--12782	20	2.6	19	87	6	68	36	13	30	19	1.90
12804--12840	19	1.9	19	94	0	65	32	16	27	24	1.96
13300--13776	54	8.9	54	90	1	706	29	17	18	33	1.95
13300--14027	161	4.4	162	85	6	976	28	17	19	33	1.95
13761--13793	17	1.9	17	100	0	66	36	6	27	30	1.81
13707--13847	71	2.0	71	88	0	210	32	14	20	32	1.92
13653--13899	125	2.0	125	92	0	413	30	15	20	33	1.94
13599--13954	179	2.0	178	90	0	559	28	17	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13778--14027	107	2.3	108	88	1	367	28	18	21	32	1.96
13778--14027	54	4.6	54	89	1	367	28	18	21	32	1.96
13836--14051	54	4.0	54	87	1	137	30	18	20	31	1.96
13438--14075	340	1.9	340	87	0	954	30	17	20	32	1.95
19842--19879	17	2.2	17	95	0	67	36	7	15	39	1.77
28493--28547	22	2.7	20	81	10	65	29	16	29	25	1.97
28417--28600	95	1.9	95	88	0	278	32	17	26	24	1.97
28435--28640	95	2.2	95	83	3	236	33	15	26	24	1.95
29029--29178	27	6.1	27	68	20	121	44	14	23	18	1.86
29044--29380	47	7.2	47	86	0	449	43	12	22	21	1.86
29071--29156	20	4.0	20	69	19	55	43	12	25	18	1.86
29165--29286	20	5.4	20	68	24	64	42	11	23	22	1.86
29212--29287	20	3.5	20	71	22	71	44	11	21	22	1.84
29726--29927	68	3.0	68	88	1	280	30	15	25	28	1.96
29972--30084	45	2.5	45	89	0	163	38	9	23	28	1.86
30061--30177	46	2.5	46	90	0	180	48	5	16	29	1.69
30768--30810	13	3.3	13	83	0	59	27	23	9	39	1.85
30782--30939	85	1.9	84	82	7	203	33	21	15	29	1.94
30967--30997	2	15.5	2	100	0	62	48	0	0	51	1.00
38372--38560	94	2.0	95	90	3	301	33	16	25	23	1.96
38999--39175	47	3.8	47	85	3	241	44	11	21	22	1.84
39080--39167	27	3.5	26	69	20	80	44	11	22	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39877--39937	27	2.3	27	94	0	104	47	14	19	18	1.82
39825--39917	47	2.0	46	91	2	150	44	12	23	19	1.85
39831--39969	74	1.9	73	92	1	233	45	13	22	18	1.85
40316--40520	68	3.0	68	84	1	268	31	15	24	27	1.96
40565--40705	45	3.1	44	82	5	140	41	8	19	30	1.82
40642--40771	48	2.8	46	84	4	179	48	6	15	29	1.71
44398--44737	163	2.1	163	90	1	547	45	12	13	28	1.80
47231--47359	65	2.0	66	83	4	163	30	1	42	25	1.64
49175--49567	59	6.7	59	90	2	566	37	19	11	31	1.87
49991--50046	22	2.7	20	76	10	58	26	26	16	30	1.96
49932--50121	95	2.0	95	91	0	308	26	26	14	32	1.95
50128--50195	21	3.2	21	93	0	118	36	10	14	38	1.81
63435--63484	18	2.9	17	82	11	66	30	2	2	66	1.14
66678--66717	20	2.0	20	85	4	55	40	2	12	45	1.56

Tables:   1

The End!