Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001922.1 Hibiscus syriacus cultivar Beakdansim tig00003890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61605

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2240--2313
37
2.0
38
81
7
89
21
4
4
70
1.21
3631--3669
2
19.5
2
89
0
60
48
0
46
5
1.24
3631--3669
12
3.2
12
96
0
69
48
0
46
5
1.24
3985--4026
19
2.2
19
95
0
75
21
26
14
38
1.91
4394--4441
23
2.0
24
84
4
62
12
16
35
35
1.87
4533--4582
3
16.7
3
91
0
82
62
0
2
36
1.07
4789--5489
139
5.1
139
79
6
600
25
17
26
30
1.97
5412--5544
55
2.4
55
84
2
169
28
21
21
29
1.98
5274--5659
193
2.0
193
84
1
495
27
19
23
29
1.98
5137--5822
332
2.1
330
80
5
758
27
17
24
29
1.98
5000--5961
471
2.0
469
82
3
1141
27
17
25
29
1.98
5468--6005
139
3.9
139
82
3
627
26
17
26
28
1.98
6303--6404
51
2.0
51
94
0
177
37
14
16
31
1.89
6358--6556
67
3.0
67
89
2
294
39
13
17
30
1.88
6516--6592
36
2.1
36
82
0
91
35
3
19
41
1.70
6620--6950
99
3.3
99
83
2
342
36
9
17
35
1.82
17648--17674
12
2.2
12
100
0
54
29
48
14
7
1.71
19329--19408
21
3.8
21
91
1
115
15
26
32
26
1.95
19329--19409
10
7.5
11
78
9
69
14
25
32
27
1.95
21294--21343
24
2.1
24
100
0
100
50
8
12
30
1.68
23080--23130
20
2.6
19
79
14
50
49
1
3
45
1.32
40858--40901
20
2.2
20
83
0
52
38
40
6
13
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40868--40921
20
2.7
20
94
0
90
33
42
11
12
1.79
40929--40978
19
2.7
19
84
3
66
16
22
22
40
1.91
45409--45443
13
2.8
13
91
4
54
37
0
14
48
1.44
49155--49212
28
2.1
28
84
12
77
34
8
8
48
1.65
51614--51791
62
2.9
62
80
5
198
32
14
16
35
1.90
56364--56401
16
2.3
17
95
4
69
42
15
5
36
1.70
56651--56698
20
2.4
20
86
6
62
29
12
0
58
1.35
58857--58951
40
2.4
38
92
3
154
16
29
35
17
1.93
58857--58951
20
4.8
20
84
10
133
16
29
35
17
1.93
60366--60413
19
2.5
20
89
3
71
29
10
6
54
1.59

Tables:   1

The End!