genome.fa.s1923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001923.1 Hibiscus syriacus cultivar Beakdansim tig00003891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58106

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4244--4336	49	1.9	48	82	4	116	19	18	25	36	1.94
5632--5664	17	1.9	17	93	0	57	21	0	3	75	0.93
5621--5673	24	2.2	25	83	10	65	24	3	5	66	1.31
6617--6781	29	5.9	29	75	12	134	58	12	13	15	1.63
6642--6781	29	4.9	29	77	7	135	59	12	12	15	1.62
6642--6777	57	2.4	56	83	3	164	59	13	12	14	1.61
6774--6811	13	2.8	14	92	8	69	60	0	7	31	1.25
7321--7349	14	2.1	14	100	0	58	58	0	41	0	0.98
8169--8205	3	12.3	3	88	11	58	70	0	0	29	0.88
8169--8205	14	2.4	16	82	17	60	70	0	0	29	0.88
9329--9393	26	2.9	21	69	20	58	49	4	13	32	1.63
9631--9788	79	2.0	79	97	0	298	18	24	15	40	1.90
9638--9764	42	3.1	42	60	33	96	18	26	14	40	1.89
10496--10521	2	13.0	2	100	0	52	50	0	0	50	1.00
11692--11732	20	2.0	20	100	0	82	36	14	19	29	1.92
12582--12972	210	1.8	212	83	7	524	24	23	19	32	1.98
15058--15236	30	6.0	30	76	4	175	58	8	13	18	1.62
15058--15200	59	2.4	60	83	8	177	57	8	13	20	1.62
15096--15286	59	3.3	59	80	9	171	58	9	13	18	1.62
15156--15286	57	2.3	59	82	5	151	58	9	13	19	1.62
16591--16636	3	15.3	3	82	8	58	67	0	0	32	0.91
23013--23042	15	2.0	15	93	0	51	40	3	6	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23038--23117	31	2.7	29	75	11	81	30	10	11	48	1.71
23440--23640	105	2.0	101	85	4	267	43	12	10	33	1.77
26864--26893	3	10.0	3	92	0	51	63	3	0	33	1.11
28370--28423	14	3.8	15	80	9	60	51	27	0	20	1.47
28371--28423	7	7.6	7	80	0	52	50	28	0	20	1.48
28370--28424	28	2.0	28	85	7	76	50	27	0	21	1.49
28476--28542	7	9.6	7	86	0	98	43	35	0	20	1.53
28482--28549	21	3.2	21	77	6	84	44	33	0	22	1.53
30026--30078	23	2.4	21	84	9	61	30	22	22	24	1.99
31394--31423	15	2.0	15	93	0	51	10	16	0	73	1.09
33148--33204	28	2.0	29	86	10	82	56	5	1	36	1.32
33319--33358	2	19.5	2	85	14	55	47	5	0	47	1.24
33656--33808	80	1.9	80	82	1	191	23	21	23	31	1.98
37965--38027	28	2.2	29	83	10	78	52	3	4	39	1.38
38162--38201	21	1.9	21	94	0	71	37	5	5	52	1.45
38808--38837	10	3.0	10	100	0	60	50	0	20	30	1.49
41157--41220	3	21.3	3	100	0	128	67	0	0	32	0.91
41249--41518	140	1.9	140	84	3	364	28	18	22	30	1.97
41504--41930	136	3.2	134	82	4	468	31	14	20	32	1.93
43651--43680	15	1.9	16	93	6	53	56	13	3	26	1.52
47965--47997	15	2.1	16	88	5	50	72	3	3	21	1.11
56049--56116	18	3.5	19	75	16	61	75	1	19	4	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56071--56193	7	17.1	7	66	17	56	74	0	19	5	1.01
56071--56198	9	15.5	8	67	19	50	75	0	19	5	1.00
56071--56175	16	6.7	15	68	21	63	76	0	17	6	1.00
56068--56116	25	1.9	26	91	4	82	77	0	18	4	0.92
56071--56162	22	4.0	22	78	9	87	75	0	17	7	1.03
56071--56193	44	2.8	43	72	14	124	74	0	19	5	1.01
56056--56209	20	7.7	19	70	18	91	74	0	19	5	1.07
56068--56211	12	12.2	12	69	19	54	75	0	19	5	1.00

Tables:   1

The End!