genome.fa.s1924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001924.1 Hibiscus syriacus cultivar Beakdansim tig00003892_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39788

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715--773	20	2.8	20	82	17	66	37	5	1	55	1.32
745--800	26	2.1	27	90	3	87	37	3	0	58	1.15
745--790	14	3.4	14	73	11	51	36	4	0	58	1.18
715--801	26	3.9	22	75	19	81	37	3	1	57	1.23
1697--1748	20	2.6	20	81	6	61	32	15	28	23	1.95
2264--2874	47	13.1	47	89	2	767	42	12	22	22	1.86
2503--2677	27	7.3	27	69	24	158	45	13	22	18	1.85
2836--2899	26	2.4	26	85	10	85	48	10	20	20	1.79
7408--7477	36	1.9	36	82	5	88	35	14	24	25	1.93
7508--7573	22	3.0	22	68	16	55	33	21	18	27	1.96
8144--8195	22	2.3	23	86	6	79	26	19	19	34	1.95
15074--15124	22	2.3	23	83	10	70	29	15	19	35	1.93
16924--17053	45	2.9	45	96	0	233	41	10	22	26	1.85
17073--17333	47	5.6	46	88	2	342	44	12	21	21	1.85
17154--17231	20	3.5	20	69	21	66	43	10	24	21	1.83
17073--17333	94	2.8	94	88	1	380	44	12	21	21	1.85
17073--17333	141	1.9	141	86	1	380	44	12	21	21	1.85
27800--28003	103	2.0	103	92	0	336	33	18	21	26	1.96
27680--28128	237	1.9	237	87	1	659	33	18	19	28	1.95
27903--28269	134	2.7	134	85	1	495	31	18	20	29	1.96
29017--29785	45	18.2	45	71	12	364	40	17	16	24	1.90
29396--30104	38	18.2	38	82	6	846	39	17	18	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29347--30104	118	6.4	116	82	5	843	39	17	18	25	1.92
30704--30783	37	2.2	37	90	0	124	28	36	13	21	1.92
35490--35540	14	3.7	14	81	5	68	27	33	17	21	1.96
35541--35574	13	2.6	13	86	13	52	14	17	20	47	1.83
36938--36978	16	2.4	18	80	8	50	39	2	31	26	1.70
37877--37939	21	3.0	21	92	0	99	25	17	25	31	1.97
39167--39203	15	2.5	15	91	4	58	40	13	18	27	1.88

Tables:   1

The End!