genome.fa.s1927.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001927.1 Hibiscus syriacus cultivar Beakdansim tig00003898_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124260

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668--1109	224	2.0	224	93	2	755	39	7	8	45	1.61
3250--3315	31	2.1	31	81	15	75	33	21	12	33	1.90
4635--4672	17	2.2	17	86	9	51	55	0	7	36	1.29
6432--6507	31	2.4	30	82	18	93	30	22	13	34	1.92
6863--6918	21	2.7	21	94	0	103	23	14	35	26	1.93
7544--7718	83	2.1	83	82	2	208	32	15	21	30	1.94
7839--7957	41	2.9	41	77	8	125	30	19	21	28	1.98
8102--8161	21	2.9	21	74	0	66	21	45	16	16	1.86
20900--20930	12	2.5	12	94	5	53	0	0	19	80	0.71
22256--22302	24	2.0	24	83	8	60	63	2	0	34	1.06
26572--26750	8	22.4	8	87	0	241	29	34	11	25	1.90
30996--31054	23	2.6	23	97	0	109	13	30	3	52	1.57
31447--31490	16	2.7	15	86	10	52	18	9	0	72	1.10
31948--31991	17	2.5	18	85	3	54	34	13	18	34	1.90
33334--33404	31	2.3	31	90	0	106	19	11	15	53	1.72
34361--34428	31	2.2	31	86	5	93	54	11	8	25	1.65
38438--38551	60	1.9	60	83	7	151	34	11	5	49	1.61
38530--38682	60	2.5	61	84	4	202	30	22	5	41	1.78
38807--38976	59	2.8	58	77	7	171	42	7	18	31	1.77
44989--45465	81	5.9	81	91	0	742	27	22	12	37	1.91
44989--45465	161	3.0	161	90	0	749	27	22	12	37	1.91
45480--45540	28	2.2	27	85	2	77	27	24	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45774--45915	56	2.6	56	85	4	173	35	19	11	33	1.88
48364--48462	46	2.2	46	92	5	166	33	16	19	31	1.93
49183--49213	10	3.1	10	100	0	62	61	19	0	19	1.35
51036--51083	20	2.4	20	100	0	96	25	4	20	50	1.66
51248--51300	20	2.7	20	100	0	106	20	20	33	24	1.97
51377--51401	12	2.1	12	100	0	50	24	16	24	36	1.94
60160--60661	120	4.3	117	80	7	455	39	15	19	25	1.91
61445--61503	2	29.5	2	100	0	118	49	0	0	50	1.00
65881--65957	29	2.6	29	85	2	100	46	14	5	33	1.66
66034--66161	29	4.2	29	73	11	121	43	11	7	37	1.68
66021--66158	30	4.5	32	72	12	119	43	13	7	36	1.71
66046--66189	64	2.2	63	85	4	189	42	13	6	37	1.71
66236--66299	29	2.2	29	85	0	83	46	10	7	34	1.68
66109--66564	122	3.5	137	79	13	483	40	12	10	36	1.78
65906--66324	204	2.1	203	91	3	684	42	12	8	36	1.74
66360--66426	29	2.3	30	92	2	109	46	13	7	32	1.71
66495--66544	24	2.1	24	88	0	73	42	10	8	40	1.68
67067--67453	183	2.1	184	91	2	629	43	3	8	45	1.49
67831--67897	30	2.3	30	87	7	93	47	8	7	35	1.63
68344--68385	12	3.5	12	81	9	50	11	19	9	59	1.59
70029--70071	20	2.3	19	88	11	70	23	30	9	37	1.86
70034--70071	20	1.9	20	100	0	76	23	28	10	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76715--76757	22	2.0	22	86	4	61	46	0	13	39	1.44
80569--80628	20	2.8	21	80	9	59	30	21	20	28	1.98
82585--82628	23	2.0	23	82	13	56	52	9	0	38	1.33
88478--88533	15	3.6	15	79	9	67	42	12	12	32	1.80
88481--88531	17	3.1	17	77	11	61	43	11	9	35	1.75
88929--88983	13	4.2	13	75	13	58	49	12	3	34	1.59
88969--89067	33	3.0	33	94	1	164	45	15	7	32	1.73
89057--89101	20	2.3	20	92	3	74	48	6	15	28	1.70
91390--91435	12	3.6	12	81	16	56	17	19	17	45	1.85
91389--91428	15	2.9	14	85	14	57	20	17	15	47	1.83
95575--95620	24	1.9	24	90	0	74	26	28	13	32	1.93
102488--102530	17	2.5	18	81	11	54	41	0	4	53	1.21
106046--106161	6	19.3	6	77	3	90	8	2	58	30	1.41
106046--106121	15	5.3	15	81	9	104	10	0	57	31	1.32
106046--106134	30	3.2	28	81	9	110	10	1	58	30	1.38
106046--106163	27	4.5	27	80	10	93	9	2	58	29	1.43
106530--106568	12	3.2	12	96	3	69	82	0	15	2	0.79
106530--106579	24	2.0	25	85	11	68	78	0	16	6	0.95

Tables:   1

The End!